Query psy16107
Match_columns 256
No_of_seqs 146 out of 393
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 21:04:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hjb_A Ccaat/enhancer binding 99.9 2.3E-21 7.9E-26 150.7 10.5 73 166-241 8-80 (87)
2 1gu4_A CAAT/enhancer binding p 99.8 2.1E-21 7.2E-26 148.2 8.7 71 166-239 8-78 (78)
3 2wt7_A Proto-oncogene protein 99.5 8.5E-14 2.9E-18 101.3 9.7 62 173-234 2-63 (63)
4 1jnm_A Proto-oncogene C-JUN; B 99.5 2.6E-14 9E-19 103.5 7.0 60 175-234 3-62 (62)
5 1ci6_A Transcription factor AT 99.5 7E-14 2.4E-18 102.1 8.3 60 174-233 3-62 (63)
6 1t2k_D Cyclic-AMP-dependent tr 99.4 4.6E-13 1.6E-17 96.5 9.4 58 175-232 3-60 (61)
7 2dgc_A Protein (GCN4); basic d 99.3 3.8E-12 1.3E-16 93.2 6.5 57 169-225 5-61 (63)
8 1dh3_A Transcription factor CR 98.7 4.4E-08 1.5E-12 69.9 6.2 50 175-224 3-52 (55)
9 2wt7_B Transcription factor MA 97.9 9.9E-05 3.4E-09 57.7 10.0 61 173-233 27-87 (90)
10 1gd2_E Transcription factor PA 97.7 8.7E-05 3E-09 55.5 7.3 61 171-231 6-66 (70)
11 3a5t_A Transcription factor MA 97.7 1E-06 3.6E-11 70.7 -3.5 55 173-227 37-91 (107)
12 2c9l_Y EB1, zebra, BZLF1 trans 97.2 0.0012 4.1E-08 48.0 7.4 44 175-218 3-46 (63)
13 2oqq_A Transcription factor HY 96.8 0.0038 1.3E-07 42.8 6.2 37 196-232 5-41 (42)
14 3a2a_A Voltage-gated hydrogen 95.6 0.018 6.1E-07 41.7 4.8 38 202-239 12-56 (58)
15 1skn_P DNA-binding domain of S 95.1 0.0079 2.7E-07 47.2 2.0 30 171-200 60-89 (92)
16 2yy0_A C-MYC-binding protein; 95.0 0.045 1.5E-06 38.6 5.3 33 201-233 19-51 (53)
17 1kd8_B GABH BLL, GCN4 acid bas 93.9 0.14 4.8E-06 34.0 5.4 30 195-224 2-31 (36)
18 2oxj_A Hybrid alpha/beta pepti 93.9 0.1 3.5E-06 34.2 4.7 28 194-221 1-28 (34)
19 3m48_A General control protein 93.3 0.091 3.1E-06 34.3 3.7 30 196-232 2-31 (33)
20 1kd8_A GABH AIV, GCN4 acid bas 93.3 0.12 4.1E-06 34.3 4.3 31 195-225 2-32 (36)
21 3c3f_A Alpha/beta peptide with 92.5 0.23 7.7E-06 32.6 4.7 28 194-221 1-28 (34)
22 3ra3_B P2F; coiled coil domain 91.8 0.13 4.4E-06 32.0 2.8 26 203-228 2-27 (28)
23 1kd8_B GABH BLL, GCN4 acid bas 91.6 0.28 9.6E-06 32.5 4.4 33 201-233 1-33 (36)
24 3c3g_A Alpha/beta peptide with 91.4 0.36 1.2E-05 31.4 4.7 30 195-231 1-30 (33)
25 3m48_A General control protein 91.3 0.19 6.6E-06 32.8 3.4 18 198-215 11-28 (33)
26 2hy6_A General control protein 91.2 0.33 1.1E-05 31.8 4.4 29 194-222 1-29 (34)
27 1kd8_A GABH AIV, GCN4 acid bas 90.7 0.27 9.1E-06 32.6 3.6 33 201-233 1-33 (36)
28 2oxj_A Hybrid alpha/beta pepti 90.3 0.44 1.5E-05 31.2 4.4 33 201-233 1-33 (34)
29 2bni_A General control protein 90.2 0.36 1.2E-05 31.7 3.9 27 195-221 2-28 (34)
30 2wq1_A General control protein 90.2 0.56 1.9E-05 30.6 4.7 29 196-231 2-30 (33)
31 2wq1_A General control protein 90.2 0.48 1.6E-05 30.9 4.4 16 200-215 13-28 (33)
32 3c3f_A Alpha/beta peptide with 89.9 0.51 1.8E-05 30.9 4.4 33 201-233 1-33 (34)
33 3ra3_A P1C; coiled coil domain 89.6 0.37 1.2E-05 29.9 3.4 26 204-229 3-28 (28)
34 1uo4_A General control protein 89.4 0.45 1.5E-05 31.2 3.9 31 195-232 2-32 (34)
35 2dgc_A Protein (GCN4); basic d 89.4 1.3 4.6E-05 31.8 6.9 36 198-233 27-62 (63)
36 3vmx_A Voltage-gated hydrogen 89.0 2.5 8.4E-05 29.6 7.7 38 201-238 4-48 (48)
37 1uo4_A General control protein 89.0 0.43 1.5E-05 31.3 3.5 18 198-215 12-29 (34)
38 1gd2_E Transcription factor PA 88.8 0.44 1.5E-05 35.4 4.0 31 198-228 40-70 (70)
39 1go4_E MAD1 (mitotic arrest de 87.7 1.1 3.6E-05 35.6 5.8 32 195-226 13-44 (100)
40 3q8t_A Beclin-1; autophagy, AT 87.6 2.9 0.0001 32.2 8.2 49 181-229 5-53 (96)
41 3c3g_A Alpha/beta peptide with 87.5 0.93 3.2E-05 29.5 4.4 18 198-215 11-28 (33)
42 1deb_A APC protein, adenomatou 87.1 1.9 6.6E-05 30.7 6.2 37 197-233 6-49 (54)
43 3nmd_A CGMP dependent protein 87.0 0.83 2.8E-05 34.3 4.6 33 198-230 37-69 (72)
44 2wt7_A Proto-oncogene protein 86.9 3.3 0.00011 29.4 7.6 33 201-233 23-55 (63)
45 2hy6_A General control protein 86.7 1 3.4E-05 29.5 4.2 32 201-232 1-32 (34)
46 1a93_B MAX protein, coiled coi 86.6 0.9 3.1E-05 29.8 4.0 27 194-220 7-33 (34)
47 1t2k_D Cyclic-AMP-dependent tr 86.2 3.9 0.00013 28.7 7.6 33 201-233 22-54 (61)
48 2wvr_A Geminin; DNA replicatio 86.1 0.92 3.2E-05 40.1 5.1 9 169-177 93-101 (209)
49 1dh3_A Transcription factor CR 85.7 2.1 7.2E-05 30.0 5.9 34 199-232 20-53 (55)
50 2bni_A General control protein 85.6 0.85 2.9E-05 29.9 3.5 33 201-233 1-33 (34)
51 2r2v_A GCN4 leucine zipper; co 85.5 1.4 4.7E-05 28.9 4.4 30 195-231 2-31 (34)
52 4dzn_A Coiled-coil peptide CC- 85.3 1.8 6.3E-05 27.7 4.8 27 203-229 4-30 (33)
53 1uii_A Geminin; human, DNA rep 85.0 4.3 0.00015 31.2 7.7 26 208-233 46-71 (83)
54 2r2v_A GCN4 leucine zipper; co 84.9 1.9 6.6E-05 28.2 4.9 17 199-215 13-29 (34)
55 3s9g_A Protein hexim1; cyclin 84.6 1.7 5.8E-05 34.7 5.5 31 198-228 41-78 (104)
56 1nkp_B MAX protein, MYC proto- 83.8 8 0.00027 28.3 8.7 33 201-233 47-79 (83)
57 2xdj_A Uncharacterized protein 83.4 3.8 0.00013 31.1 6.8 40 194-233 20-59 (83)
58 2kz5_A Transcription factor NF 83.4 0.097 3.3E-06 41.0 -2.1 21 173-193 66-86 (91)
59 3he5_A Synzip1; heterodimeric 83.2 3.4 0.00012 28.4 5.9 34 198-231 7-47 (49)
60 3oja_B Anopheles plasmodium-re 82.3 6.4 0.00022 36.9 9.5 27 202-228 545-571 (597)
61 2v71_A Nuclear distribution pr 81.8 4.1 0.00014 35.4 7.3 47 187-233 35-81 (189)
62 1nlw_A MAD protein, MAX dimeri 81.7 2.9 9.8E-05 31.2 5.5 30 203-232 49-78 (80)
63 1uii_A Geminin; human, DNA rep 81.7 5.6 0.00019 30.6 7.2 55 168-232 23-77 (83)
64 2jee_A YIIU; FTSZ, septum, coi 81.5 4.9 0.00017 30.7 6.8 38 196-233 22-66 (81)
65 4etp_A Kinesin-like protein KA 80.7 1.5 5.1E-05 41.2 4.5 50 197-246 6-55 (403)
66 1am9_A Srebp-1A, protein (ster 80.2 12 0.00041 27.6 8.5 54 175-228 4-77 (82)
67 3kin_B Kinesin heavy chain; mo 80.0 2.7 9.2E-05 33.3 5.2 31 198-228 86-116 (117)
68 2pnv_A Small conductance calci 79.5 4.5 0.00015 27.5 5.4 33 201-233 9-41 (43)
69 3oja_A Leucine-rich immune mol 79.3 12 0.00042 34.4 10.2 45 189-233 430-474 (487)
70 3hnw_A Uncharacterized protein 78.7 19 0.00064 29.4 10.0 28 200-227 102-129 (138)
71 1fmh_A General control protein 77.9 4.1 0.00014 26.0 4.5 27 198-224 5-31 (33)
72 3hnw_A Uncharacterized protein 77.7 9.2 0.00032 31.2 7.8 60 172-232 68-127 (138)
73 3he5_B Synzip2; heterodimeric 77.2 11 0.00038 26.1 6.9 18 206-223 29-46 (52)
74 2oqq_A Transcription factor HY 77.1 3 0.0001 28.4 3.9 24 194-217 17-40 (42)
75 1nkp_B MAX protein, MYC proto- 76.7 4.5 0.00015 29.7 5.2 34 194-227 47-80 (83)
76 3m91_A Proteasome-associated A 76.3 11 0.00038 26.3 6.8 39 195-233 10-48 (51)
77 2yy0_A C-MYC-binding protein; 75.5 3.5 0.00012 28.8 4.1 24 195-218 27-50 (53)
78 1wlq_A Geminin; coiled-coil; 2 75.5 9.8 0.00033 29.3 6.9 26 208-233 38-63 (83)
79 3mq7_A Bone marrow stromal ant 75.4 14 0.00048 30.2 8.1 32 200-231 70-101 (121)
80 3nmd_A CGMP dependent protein 75.2 12 0.00043 27.9 7.2 25 207-231 39-63 (72)
81 3cve_A Homer protein homolog 1 75.2 6 0.00021 29.5 5.5 30 199-228 5-34 (72)
82 4dzn_A Coiled-coil peptide CC- 75.1 3.3 0.00011 26.5 3.5 23 209-231 3-25 (33)
83 2wuj_A Septum site-determining 74.6 2.6 8.7E-05 29.6 3.2 25 199-223 32-56 (57)
84 1p9i_A Cortexillin I/GCN4 hybr 74.3 4.5 0.00015 25.6 3.9 23 202-224 7-29 (31)
85 3s4r_A Vimentin; alpha-helix, 74.2 6.2 0.00021 30.2 5.6 22 201-222 23-44 (93)
86 1jnm_A Proto-oncogene C-JUN; B 74.1 20 0.00068 25.1 7.8 34 200-233 21-54 (62)
87 3v86_A De novo design helix; c 73.8 4.6 0.00016 24.8 3.7 25 204-228 3-27 (27)
88 3viq_B Mating-type switching p 73.7 3.4 0.00012 31.9 3.9 29 204-232 4-32 (85)
89 1wlq_A Geminin; coiled-coil; 2 73.6 11 0.00037 29.0 6.7 33 201-233 38-70 (83)
90 2wg5_A General control protein 71.7 3.5 0.00012 32.2 3.7 30 201-230 7-36 (109)
91 3u06_A Protein claret segregat 71.6 3.7 0.00013 38.8 4.5 50 197-246 6-55 (412)
92 1dip_A Delta-sleep-inducing pe 71.4 4.2 0.00014 30.9 3.9 32 201-232 15-46 (78)
93 1wt6_A Myotonin-protein kinase 71.3 13 0.00045 28.4 6.7 37 192-228 36-72 (81)
94 3he4_A Synzip6; heterodimeric 70.9 13 0.00044 26.2 6.0 32 198-229 21-52 (56)
95 3m9b_A Proteasome-associated A 70.8 5.3 0.00018 36.1 5.1 36 197-232 57-92 (251)
96 1zxa_A CGMP-dependent protein 69.2 7 0.00024 28.9 4.6 34 199-232 23-56 (67)
97 3oja_B Anopheles plasmodium-re 68.0 14 0.00049 34.5 7.7 37 197-233 533-569 (597)
98 1dip_A Delta-sleep-inducing pe 67.8 4.2 0.00014 30.9 3.2 27 190-216 18-44 (78)
99 3o0z_A RHO-associated protein 67.7 27 0.00091 29.8 8.6 49 184-232 80-128 (168)
100 1nkp_A C-MYC, MYC proto-oncoge 67.7 12 0.00042 28.1 5.9 32 202-233 53-84 (88)
101 3mq9_A Bone marrow stromal ant 67.0 14 0.00048 33.9 7.3 27 206-232 434-460 (471)
102 3cvf_A Homer-3, homer protein 66.9 5.4 0.00019 30.2 3.7 30 199-228 11-40 (79)
103 1ic2_A Tropomyosin alpha chain 66.9 26 0.00088 25.7 7.4 37 197-233 30-66 (81)
104 1ci6_A Transcription factor AT 66.5 31 0.0011 24.3 7.6 33 200-232 22-54 (63)
105 3u1c_A Tropomyosin alpha-1 cha 66.1 24 0.00083 27.0 7.4 37 197-233 33-69 (101)
106 1nlw_A MAD protein, MAX dimeri 65.4 11 0.00036 28.1 5.0 37 191-227 44-80 (80)
107 1nkp_A C-MYC, MYC proto-oncoge 65.4 40 0.0014 25.2 9.7 36 193-228 51-86 (88)
108 2jee_A YIIU; FTSZ, septum, coi 64.5 24 0.00081 26.9 6.9 16 213-228 53-68 (81)
109 1jcd_A Major outer membrane li 64.4 12 0.00041 26.3 4.8 32 201-232 4-35 (52)
110 2xzr_A Immunoglobulin-binding 64.1 20 0.00069 28.6 6.6 39 195-233 70-108 (114)
111 3ol1_A Vimentin; structural ge 64.1 28 0.00095 27.4 7.6 29 205-233 80-108 (119)
112 1gk7_A Vimentin; intermediate 63.4 3.2 0.00011 27.5 1.6 21 200-220 19-39 (39)
113 1g6u_A Domain swapped dimer; d 63.2 12 0.00042 25.5 4.6 45 184-228 3-47 (48)
114 2yko_A LINE-1 ORF1P; RNA-bindi 63.1 23 0.00078 31.7 7.6 66 190-255 9-86 (233)
115 4emc_A Monopolin complex subun 62.8 9 0.00031 33.4 4.8 44 189-232 8-51 (190)
116 1gmj_A ATPase inhibitor; coile 62.4 44 0.0015 25.6 8.1 18 211-228 54-71 (84)
117 2j5u_A MREC protein; bacterial 62.3 3.2 0.00011 36.6 2.0 30 204-233 29-61 (255)
118 2zxx_A Geminin; coiled-coil, c 61.7 23 0.00079 26.9 6.3 8 170-177 13-20 (79)
119 2wt7_B Transcription factor MA 60.2 14 0.00048 28.6 5.0 30 202-231 49-78 (90)
120 4dzo_A Mitotic spindle assembl 60.0 10 0.00035 30.5 4.3 26 208-233 4-29 (123)
121 4ath_A MITF, microphthalmia-as 60.0 19 0.00065 27.5 5.6 33 192-224 47-79 (83)
122 2zqm_A Prefoldin beta subunit 59.6 26 0.00088 26.3 6.4 35 198-232 74-108 (117)
123 1ses_A Seryl-tRNA synthetase; 59.3 25 0.00085 33.0 7.6 28 202-229 65-92 (421)
124 2zxx_A Geminin; coiled-coil, c 59.0 28 0.00095 26.4 6.3 22 208-229 34-55 (79)
125 3m9b_A Proteasome-associated A 58.9 12 0.00042 33.8 5.1 36 194-229 61-96 (251)
126 3s4r_A Vimentin; alpha-helix, 58.6 19 0.00063 27.5 5.4 36 194-229 56-91 (93)
127 2dfs_A Myosin-5A; myosin-V, in 58.3 35 0.0012 36.0 9.1 28 198-225 1020-1047(1080)
128 1t6f_A Geminin; coiled-coil, c 57.6 13 0.00046 24.6 3.8 22 208-229 7-28 (37)
129 1wle_A Seryl-tRNA synthetase; 57.6 40 0.0014 32.7 8.9 26 203-228 118-143 (501)
130 2ve7_A Kinetochore protein HEC 56.8 8.8 0.0003 34.8 3.9 32 199-230 183-214 (315)
131 2lz1_A Nuclear factor erythroi 56.7 0.27 9.2E-06 38.5 -5.2 20 173-192 66-85 (90)
132 3m91_A Proteasome-associated A 56.6 33 0.0011 23.8 6.0 32 196-227 18-49 (51)
133 1fxk_A Prefoldin; archaeal pro 56.0 33 0.0011 25.4 6.4 36 198-233 69-104 (107)
134 1fmh_A General control protein 56.0 16 0.00056 23.3 3.9 28 202-229 2-29 (33)
135 3cvf_A Homer-3, homer protein 55.5 49 0.0017 25.0 7.2 42 191-232 17-58 (79)
136 3cve_A Homer protein homolog 1 55.4 51 0.0017 24.5 7.2 42 191-232 11-52 (72)
137 2dq0_A Seryl-tRNA synthetase; 55.2 25 0.00085 33.5 6.9 25 204-228 72-96 (455)
138 2zvf_A Alanyl-tRNA synthetase; 55.1 15 0.00051 29.4 4.6 32 197-228 28-59 (171)
139 1hjb_A Ccaat/enhancer binding 55.1 47 0.0016 25.3 7.2 32 201-232 36-67 (87)
140 2j5u_A MREC protein; bacterial 54.7 6.3 0.00022 34.7 2.5 29 204-232 22-50 (255)
141 3oja_A Leucine-rich immune mol 54.4 41 0.0014 30.9 8.1 37 197-233 424-460 (487)
142 1l8d_A DNA double-strand break 54.2 51 0.0018 24.7 7.3 31 201-231 71-101 (112)
143 2lw1_A ABC transporter ATP-bin 54.0 24 0.00081 26.2 5.3 26 208-233 22-47 (89)
144 3mtu_A Tropomyosin alpha-1 cha 53.5 57 0.0019 23.9 7.2 27 199-225 7-33 (75)
145 3u59_A Tropomyosin beta chain; 53.5 55 0.0019 24.8 7.4 34 199-232 35-68 (101)
146 1gu4_A CAAT/enhancer binding p 53.2 68 0.0023 23.9 8.0 34 200-233 35-68 (78)
147 1yhn_B RILP, RAB interacting l 52.9 32 0.0011 25.3 5.6 45 202-246 4-48 (65)
148 1hlo_A Protein (transcription 52.8 62 0.0021 23.4 7.6 20 175-194 10-29 (80)
149 3efg_A Protein SLYX homolog; x 52.8 46 0.0016 24.7 6.6 39 194-232 14-52 (78)
150 3he5_B Synzip2; heterodimeric 52.2 56 0.0019 22.6 7.2 27 205-231 21-47 (52)
151 3w03_C DNA repair protein XRCC 51.9 23 0.00078 30.6 5.5 15 202-216 160-174 (184)
152 2dfs_A Myosin-5A; myosin-V, in 51.1 27 0.00094 36.8 7.0 22 208-229 977-998 (1080)
153 2xdj_A Uncharacterized protein 50.9 21 0.00071 27.0 4.5 22 211-232 23-44 (83)
154 1ytz_T Troponin T; muscle, THI 50.7 54 0.0018 25.8 7.1 43 194-236 49-91 (107)
155 2z5i_A TM, general control pro 50.5 59 0.002 22.4 6.5 31 202-232 6-36 (52)
156 3qne_A Seryl-tRNA synthetase, 50.0 50 0.0017 32.1 8.1 25 204-228 74-98 (485)
157 1joc_A EEA1, early endosomal a 49.8 35 0.0012 26.9 5.9 26 201-226 11-36 (125)
158 3mq7_A Bone marrow stromal ant 49.7 83 0.0028 25.6 8.1 37 196-232 73-109 (121)
159 2w6b_A RHO guanine nucleotide 49.5 48 0.0016 23.7 5.9 35 199-233 15-49 (56)
160 3swk_A Vimentin; cytoskeleton, 49.1 31 0.0011 25.8 5.3 28 202-229 57-84 (86)
161 1a93_B MAX protein, coiled coi 48.6 36 0.0012 22.2 4.7 28 206-233 5-32 (34)
162 1j1d_B Troponin T, TNT; THIN f 48.6 57 0.002 25.7 6.9 46 190-235 45-90 (106)
163 3vmx_A Voltage-gated hydrogen 47.5 64 0.0022 22.4 6.1 34 191-224 8-41 (48)
164 3qh9_A Liprin-beta-2; coiled-c 46.0 63 0.0022 24.7 6.5 41 193-233 25-65 (81)
165 1am9_A Srebp-1A, protein (ster 45.9 45 0.0015 24.5 5.6 30 192-221 48-77 (82)
166 3swk_A Vimentin; cytoskeleton, 45.8 52 0.0018 24.6 6.0 37 197-233 3-39 (86)
167 3viq_A SWI5-dependent recombin 45.6 28 0.00097 27.9 4.8 28 205-232 4-31 (122)
168 1zme_C Proline utilization tra 45.4 22 0.00074 24.2 3.6 17 213-229 49-65 (70)
169 1gmj_A ATPase inhibitor; coile 45.2 80 0.0028 24.2 7.0 26 203-228 53-78 (84)
170 4h22_A Leucine-rich repeat fli 44.8 50 0.0017 26.2 6.0 33 202-234 52-84 (103)
171 1x79_B RAB GTPase binding effe 44.6 1.2E+02 0.0041 24.2 8.9 47 187-233 24-70 (112)
172 2oa5_A Hypothetical protein BQ 44.0 12 0.00041 30.1 2.3 23 196-218 10-32 (110)
173 2w83_C C-JUN-amino-terminal ki 43.1 46 0.0016 25.2 5.3 34 198-231 34-67 (77)
174 1wle_A Seryl-tRNA synthetase; 43.1 1E+02 0.0035 29.8 9.1 35 196-233 118-152 (501)
175 3lay_A Zinc resistance-associa 43.0 1.1E+02 0.0037 25.8 8.2 8 174-181 76-83 (175)
176 3trt_A Vimentin; cytoskeleton, 42.9 87 0.003 22.2 8.9 26 203-228 51-76 (77)
177 2ve7_C Kinetochore protein NUF 42.9 17 0.00058 32.1 3.3 38 187-224 134-178 (250)
178 1ses_A Seryl-tRNA synthetase; 42.8 37 0.0013 31.9 5.9 38 193-233 63-100 (421)
179 2dq0_A Seryl-tRNA synthetase; 42.1 40 0.0014 32.0 6.1 36 195-233 70-105 (455)
180 3ol1_A Vimentin; structural ge 42.1 61 0.0021 25.4 6.2 8 208-215 34-41 (119)
181 3swy_A Cyclic nucleotide-gated 42.0 81 0.0028 21.6 6.1 36 198-233 2-37 (46)
182 3nr7_A DNA-binding protein H-N 41.8 87 0.003 23.7 6.7 41 205-245 42-82 (86)
183 3a2a_A Voltage-gated hydrogen 41.7 89 0.0031 22.4 6.3 36 190-225 14-49 (58)
184 2aze_A Transcription factor DP 41.7 44 0.0015 28.2 5.6 28 201-228 5-32 (155)
185 1go4_E MAD1 (mitotic arrest de 41.0 60 0.0021 25.5 5.9 35 199-233 10-44 (100)
186 3q0x_A Centriole protein; cent 40.6 1.5E+02 0.005 26.2 9.0 53 179-233 165-217 (228)
187 1ic2_A Tropomyosin alpha chain 40.5 1E+02 0.0035 22.4 7.2 40 192-231 18-57 (81)
188 1lwu_C Fibrinogen gamma chain; 40.4 68 0.0023 29.6 7.1 33 200-232 25-57 (323)
189 1fxk_C Protein (prefoldin); ar 39.0 67 0.0023 24.8 6.0 31 197-227 98-128 (133)
190 2v66_B Nuclear distribution pr 38.9 1.5E+02 0.005 23.6 9.0 35 196-230 37-71 (111)
191 2pnv_A Small conductance calci 38.8 36 0.0012 23.0 3.7 30 197-226 12-41 (43)
192 3lss_A Seryl-tRNA synthetase; 38.7 87 0.003 30.3 7.9 23 207-229 109-132 (484)
193 2l5g_B Putative uncharacterize 38.6 86 0.0029 21.3 5.5 33 198-230 6-38 (42)
194 4b4t_K 26S protease regulatory 38.2 72 0.0024 30.1 7.1 36 198-233 53-88 (428)
195 3hls_A Guanylate cyclase solub 38.0 96 0.0033 22.2 6.2 40 204-245 24-63 (66)
196 3kqg_A Langerin, C-type lectin 37.9 27 0.00093 27.5 3.6 18 214-231 22-39 (182)
197 2ocy_A RAB guanine nucleotide 37.5 66 0.0023 27.0 6.0 32 202-233 116-147 (154)
198 3iv1_A Tumor susceptibility ge 36.9 1.1E+02 0.0039 23.0 6.6 56 174-229 13-74 (78)
199 3mud_A DNA repair protein XRCC 36.9 92 0.0031 26.7 6.9 31 201-231 135-165 (175)
200 1m1j_C Fibrinogen gamma chain; 36.2 1.1E+02 0.0037 29.1 8.0 34 199-232 96-129 (409)
201 3sjb_C Golgi to ER traffic pro 36.1 1.1E+02 0.0039 23.7 6.7 34 200-233 48-81 (93)
202 3mq9_A Bone marrow stromal ant 36.1 59 0.002 29.7 6.0 28 201-228 443-470 (471)
203 2zqm_A Prefoldin beta subunit 35.9 86 0.0029 23.3 6.0 28 198-225 81-108 (117)
204 1bb1_B Designed, thermostable 35.4 81 0.0028 20.4 4.8 32 202-233 3-34 (36)
205 4fla_A Regulation of nuclear P 35.3 93 0.0032 25.7 6.5 74 178-255 74-150 (152)
206 1s1c_X RHO-associated, coiled- 35.0 77 0.0026 23.5 5.3 31 198-228 3-33 (71)
207 2z5i_A TM, general control pro 35.0 1.1E+02 0.0037 21.0 6.6 39 195-233 6-44 (52)
208 4e61_A Protein BIM1; EB1-like 34.8 1.7E+02 0.0058 23.2 7.7 28 199-226 16-43 (106)
209 3rvy_A ION transport protein; 34.6 8.3 0.00028 33.1 0.0 21 204-224 259-279 (285)
210 1l8d_A DNA double-strand break 34.6 90 0.0031 23.3 5.9 31 197-227 13-43 (112)
211 3tnu_B Keratin, type II cytosk 34.4 1E+02 0.0036 24.1 6.5 12 178-189 24-35 (129)
212 1jcd_A Major outer membrane li 34.3 1.2E+02 0.004 21.2 6.1 35 195-229 5-39 (52)
213 3ra3_B P2F; coiled coil domain 34.3 35 0.0012 21.0 2.8 22 200-221 6-27 (28)
214 3o0z_A RHO-associated protein 34.2 2.2E+02 0.0074 24.2 9.6 38 192-229 46-83 (168)
215 2akf_A Coronin-1A; coiled coil 34.1 86 0.003 19.9 4.7 27 205-231 3-29 (32)
216 1rtm_1 Mannose-binding protein 34.0 54 0.0018 25.0 4.6 24 207-230 3-26 (149)
217 2b5u_A Colicin E3; high resolu 33.6 89 0.003 31.1 7.0 40 190-229 303-342 (551)
218 3ljm_A Coil Ser L9C; de novo d 33.2 78 0.0027 19.9 4.3 23 205-227 5-27 (31)
219 2p22_A Suppressor protein STP2 33.1 1.5E+02 0.0053 25.1 7.7 38 196-233 58-95 (174)
220 1ik9_A DNA repair protein XRCC 33.0 63 0.0022 28.0 5.3 38 191-228 136-173 (213)
221 1a93_A Coiled coil, LZ, MYC pr 32.9 71 0.0024 20.7 4.2 24 204-227 10-33 (34)
222 1lwu_C Fibrinogen gamma chain; 32.6 1.3E+02 0.0045 27.6 7.7 37 197-233 15-51 (323)
223 4h22_A Leucine-rich repeat fli 32.6 1.3E+02 0.0046 23.7 6.7 40 193-232 36-75 (103)
224 3qne_A Seryl-tRNA synthetase, 32.6 1.3E+02 0.0043 29.2 7.9 31 196-226 73-103 (485)
225 2wg5_A General control protein 32.3 42 0.0014 26.0 3.7 25 197-221 10-34 (109)
226 2wuj_A Septum site-determining 32.1 73 0.0025 22.0 4.6 32 198-229 24-55 (57)
227 3sjb_C Golgi to ER traffic pro 31.6 1.8E+02 0.0062 22.5 7.6 23 211-233 52-74 (93)
228 2xus_A Breast cancer metastasi 31.0 1.1E+02 0.0037 21.3 5.2 30 200-229 12-46 (49)
229 3u1c_A Tropomyosin alpha-1 cha 31.0 1.7E+02 0.006 22.1 8.2 34 195-228 24-57 (101)
230 1joc_A EEA1, early endosomal a 30.9 1.4E+02 0.0048 23.4 6.7 38 190-227 7-44 (125)
231 3swf_A CGMP-gated cation chann 30.9 96 0.0033 23.2 5.3 24 208-231 32-55 (74)
232 1uix_A RHO-associated kinase; 30.8 1E+02 0.0034 22.9 5.3 23 203-225 6-28 (71)
233 1t6f_A Geminin; coiled-coil, c 30.7 76 0.0026 21.0 4.1 26 204-229 10-35 (37)
234 2lw1_A ABC transporter ATP-bin 30.5 73 0.0025 23.5 4.7 22 203-224 24-45 (89)
235 3pjs_K KCSA, voltage-gated pot 30.3 74 0.0025 25.6 5.1 20 206-225 143-162 (166)
236 2ocy_A RAB guanine nucleotide 29.9 1.4E+02 0.0049 24.9 6.8 25 208-232 108-132 (154)
237 2eqb_B RAB guanine nucleotide 29.8 1.5E+02 0.0052 23.1 6.5 8 212-219 51-58 (97)
238 2jn6_A Protein CGL2762, transp 29.8 2.9 0.0001 30.4 -3.2 23 207-229 65-87 (97)
239 3u06_A Protein claret segregat 29.7 1.3E+02 0.0046 28.1 7.4 41 193-233 16-56 (412)
240 1a93_A Coiled coil, LZ, MYC pr 29.7 77 0.0026 20.5 4.0 24 197-220 10-33 (34)
241 2fic_A Bridging integrator 1; 29.6 82 0.0028 26.4 5.4 16 205-220 194-209 (251)
242 3tq2_A KE1; parallel three hel 28.9 85 0.0029 20.3 4.1 31 198-228 5-35 (36)
243 2dq3_A Seryl-tRNA synthetase; 28.9 26 0.0009 32.9 2.4 20 206-225 73-92 (425)
244 3gpv_A Transcriptional regulat 28.7 88 0.003 24.9 5.2 37 197-233 98-134 (148)
245 2v66_B Nuclear distribution pr 28.7 1.5E+02 0.0053 23.5 6.5 24 195-218 4-27 (111)
246 1fxk_C Protein (prefoldin); ar 28.5 1.9E+02 0.0066 22.1 7.0 35 198-232 92-126 (133)
247 2l5g_A GPS2 protein, G protein 28.3 74 0.0025 21.1 3.8 23 203-225 10-32 (38)
248 1zme_C Proline utilization tra 28.2 56 0.0019 22.1 3.4 20 204-223 47-66 (70)
249 3v2d_2 50S ribosomal protein L 28.2 1.7E+02 0.0059 21.2 7.0 41 209-249 17-57 (72)
250 3azd_A Short alpha-tropomyosin 28.1 22 0.00075 23.1 1.2 26 199-224 9-34 (37)
251 4etp_A Kinesin-like protein KA 27.9 1.5E+02 0.0052 27.5 7.4 35 197-231 20-54 (403)
252 3u59_A Tropomyosin beta chain; 27.8 1.9E+02 0.0066 21.7 8.2 37 193-229 22-58 (101)
253 1q08_A Zn(II)-responsive regul 27.7 1.4E+02 0.0047 21.4 5.7 32 202-233 40-71 (99)
254 2w6a_A ARF GTPase-activating p 27.5 1.8E+02 0.0061 21.2 7.5 24 205-228 38-61 (63)
255 1lwu_B Fibrinogen beta chain; 27.2 47 0.0016 30.5 3.7 33 201-233 28-60 (323)
256 4emc_A Monopolin complex subun 27.2 1.1E+02 0.0037 26.6 5.7 42 190-231 16-57 (190)
257 1ykh_B RNA polymerase II holoe 27.0 1.6E+02 0.0054 23.5 6.4 34 200-233 91-128 (132)
258 3coq_A Regulatory protein GAL4 27.0 56 0.0019 23.0 3.4 13 240-252 77-89 (89)
259 4ati_A MITF, microphthalmia-as 26.9 16 0.00055 28.9 0.5 22 177-198 27-48 (118)
260 3rk3_E Complexin-1; snare prot 26.9 1.8E+02 0.0061 21.1 5.9 27 192-218 21-47 (63)
261 3eff_K Voltage-gated potassium 26.4 1.3E+02 0.0046 23.1 5.8 18 206-223 116-133 (139)
262 3tnu_A Keratin, type I cytoske 26.4 1.1E+02 0.0037 24.1 5.3 11 179-189 27-37 (131)
263 1deb_A APC protein, adenomatou 26.3 78 0.0027 22.4 3.8 23 211-233 6-28 (54)
264 3viq_B Mating-type switching p 26.2 64 0.0022 24.7 3.7 25 198-222 5-29 (85)
265 3w03_C DNA repair protein XRCC 26.2 1.6E+02 0.0056 25.2 6.7 29 198-226 149-177 (184)
266 1yke_B RNA polymerase II holoe 26.1 1.6E+02 0.0055 24.2 6.4 33 201-233 92-128 (151)
267 1d7m_A Cortexillin I; coiled-c 26.1 2.4E+02 0.0081 22.1 7.7 45 186-230 17-62 (101)
268 2efr_A General control protein 25.9 50 0.0017 27.6 3.3 18 201-218 98-115 (155)
269 3sja_C Golgi to ER traffic pro 25.8 1.9E+02 0.0066 21.0 7.4 45 191-235 3-59 (65)
270 1fxk_A Prefoldin; archaeal pro 25.5 1.4E+02 0.0047 21.9 5.5 26 205-230 69-94 (107)
271 4fla_A Regulation of nuclear P 25.3 2.8E+02 0.0097 22.7 9.6 44 189-232 67-110 (152)
272 3mxn_A RECQ-mediated genome in 25.2 31 0.0011 29.1 2.0 35 42-76 50-90 (157)
273 1j1d_C Troponin I, TNI; THIN f 25.2 2.1E+02 0.0072 23.3 6.9 43 191-233 62-104 (133)
274 3qh9_A Liprin-beta-2; coiled-c 24.9 2E+02 0.007 21.8 6.2 36 198-233 16-51 (81)
275 2oto_A M protein; helical coil 24.9 1.8E+02 0.0062 23.2 6.5 38 190-227 46-83 (155)
276 2fxo_A Myosin heavy chain, car 24.7 2.5E+02 0.0086 21.9 8.5 37 196-232 85-121 (129)
277 2zdi_C Prefoldin subunit alpha 24.3 1.1E+02 0.0038 24.3 5.1 33 197-229 108-140 (151)
278 2oa5_A Hypothetical protein BQ 24.3 57 0.002 26.2 3.2 24 210-233 10-33 (110)
279 2w6a_A ARF GTPase-activating p 24.3 2.1E+02 0.0071 20.8 6.3 30 200-229 26-55 (63)
280 2gkw_A TNF receptor-associated 24.0 1.4E+02 0.0047 24.4 5.7 32 198-229 4-35 (192)
281 3qks_A DNA double-strand break 23.7 61 0.0021 26.4 3.4 37 203-242 163-199 (203)
282 1rtm_1 Mannose-binding protein 23.3 89 0.003 23.7 4.1 25 199-223 2-26 (149)
283 3vlc_E Golgi to ER traffic pro 23.1 1E+02 0.0035 24.0 4.4 22 211-232 59-80 (94)
284 2er8_A Regulatory protein Leu3 22.9 41 0.0014 23.1 1.9 18 203-220 51-68 (72)
285 3gwk_C SAG1039, putative uncha 22.8 1.9E+02 0.0066 20.3 5.7 28 200-227 14-41 (98)
286 2ve7_C Kinetochore protein NUF 22.7 39 0.0013 29.8 2.2 52 174-225 135-186 (250)
287 3rvy_A ION transport protein; 22.6 18 0.00062 31.0 0.0 25 208-232 256-280 (285)
288 3j21_W 50S ribosomal protein L 22.6 2.1E+02 0.0072 20.7 5.8 41 209-249 10-51 (72)
289 3r8s_Y 50S ribosomal protein L 22.5 1.2E+02 0.004 21.5 4.3 41 209-250 10-51 (63)
290 3rrk_A V-type ATPase 116 kDa s 22.4 1.6E+02 0.0056 25.9 6.2 35 196-230 101-138 (357)
291 2v4h_A NF-kappa-B essential mo 22.4 2.5E+02 0.0084 22.5 6.5 31 202-232 46-79 (110)
292 1zxa_A CGMP-dependent protein 22.1 1.8E+02 0.0061 21.3 5.3 24 195-218 26-49 (67)
293 3efg_A Protein SLYX homolog; x 21.9 2.2E+02 0.0075 20.9 5.9 35 199-233 26-60 (78)
294 2zvf_A Alanyl-tRNA synthetase; 21.9 2E+02 0.0068 22.7 6.1 48 174-221 9-59 (171)
295 1t7s_A BAG-1 cochaperone; stru 21.8 79 0.0027 26.2 3.7 34 185-222 96-129 (137)
296 2riq_A Poly [ADP-ribose] polym 21.8 2.6E+02 0.0089 23.3 7.0 43 204-246 22-67 (160)
297 3tq7_B Microtubule-associated 21.8 76 0.0026 24.0 3.3 31 203-233 3-39 (82)
298 2v71_A Nuclear distribution pr 21.7 2.9E+02 0.0099 23.7 7.4 29 200-228 94-122 (189)
299 4i0x_B ESAT-6-like protein MAB 21.4 2E+02 0.007 20.9 5.7 20 206-225 23-42 (103)
300 2yo3_A General control protein 21.4 95 0.0033 28.3 4.5 35 198-232 227-261 (268)
301 1pyi_A Protein (pyrimidine pat 21.1 99 0.0034 22.1 3.8 18 219-236 52-69 (96)
302 4dac_A Computationally designe 20.9 42 0.0014 20.7 1.4 19 206-224 6-24 (28)
303 3zbh_A ESXA; unknown function, 20.8 2.2E+02 0.0075 19.8 5.7 27 201-227 16-42 (99)
304 3lss_A Seryl-tRNA synthetase; 20.7 5.1E+02 0.017 25.0 9.7 26 200-225 109-135 (484)
305 3rrk_A V-type ATPase 116 kDa s 20.6 2.5E+02 0.0084 24.7 7.0 33 198-230 96-128 (357)
306 3pvv_A Chromosomal replication 20.5 94 0.0032 23.7 3.7 26 201-226 72-97 (101)
307 1fzc_C Fibrin; blood coagulati 20.5 48 0.0016 30.5 2.4 33 200-232 17-49 (319)
308 1a92_A Delta antigen; leucine 20.4 2.3E+02 0.0077 19.8 7.4 26 200-225 13-38 (50)
309 1r73_A TM1492, 50S ribosomal p 20.3 2.4E+02 0.0081 20.0 5.6 28 209-237 10-37 (66)
310 3gpv_A Transcriptional regulat 20.3 1.9E+02 0.0066 22.8 5.7 35 199-233 93-127 (148)
311 1gk6_A Vimentin; intermediate 20.2 1.6E+02 0.0053 20.4 4.5 33 200-232 6-52 (59)
312 2zdi_C Prefoldin subunit alpha 20.2 2.7E+02 0.0091 22.0 6.5 35 198-232 102-136 (151)
313 2vz4_A Tipal, HTH-type transcr 20.2 1.2E+02 0.0041 22.5 4.2 29 204-232 77-105 (108)
314 3a5t_A Transcription factor MA 20.0 14 0.00047 29.4 -1.2 33 201-233 58-90 (107)
No 1
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=99.85 E-value=2.3e-21 Score=150.73 Aligned_cols=73 Identities=67% Similarity=0.918 Sum_probs=64.7
Q ss_pred CCCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q psy16107 166 SVDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHL 241 (256)
Q Consensus 166 ~~~k~dd~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~ 241 (256)
....+|++||+||+|||+||+|||+|+|+++.+++.++.+|+.||..|+++|++|++|+..||.+|++ +|+.+
T Consensus 8 ~~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~---~p~~~ 80 (87)
T 1hjb_A 8 TVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ---LPEPL 80 (87)
T ss_dssp --CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CcCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CcHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999 88864
No 2
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=99.85 E-value=2.1e-21 Score=148.23 Aligned_cols=71 Identities=68% Similarity=0.930 Sum_probs=63.8
Q ss_pred CCCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q psy16107 166 SVDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPE 239 (256)
Q Consensus 166 ~~~k~dd~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe 239 (256)
....+|++||+||+|||+||+|||+|+|+++.+++.++.+|+.||..|+.+|++|++|+..||++|++ +|+
T Consensus 8 ~~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q---~p~ 78 (78)
T 1gu4_A 8 TVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ---LPE 78 (78)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-------
T ss_pred CcccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCC
Confidence 45567999999999999999999999999999999999999999999999999999999999999999 664
No 3
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.51 E-value=8.5e-14 Score=101.34 Aligned_cols=62 Identities=26% Similarity=0.325 Sum_probs=59.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16107 173 EYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNV 234 (256)
Q Consensus 173 ~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~ 234 (256)
+.+.||+||++||+|||.++++...+++.+|..|+.+|..|+.+|..|+.|+..|+.+|..|
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~H 63 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAAH 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999999999999999999999999875
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.51 E-value=2.6e-14 Score=103.48 Aligned_cols=60 Identities=37% Similarity=0.457 Sum_probs=53.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16107 175 KRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNV 234 (256)
Q Consensus 175 r~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~ 234 (256)
.+||.||++||+|||++++++..+++.+|..|+.+|..|+.+|..|+.|+..|+++|++|
T Consensus 3 errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~~H 62 (62)
T 1jnm_A 3 ERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMNH 62 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 478999999999999999999999999999999999999999999999999999999875
No 5
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.49 E-value=7e-14 Score=102.13 Aligned_cols=60 Identities=27% Similarity=0.407 Sum_probs=54.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 174 YKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 174 Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
-.+||+||++||.|||+|+|++..+++.++..|+.+|..|+.+|..|+.|+..||++|..
T Consensus 3 ~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 3 KLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357899999999999999999999999999999999999999999999999999999986
No 6
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.44 E-value=4.6e-13 Score=96.51 Aligned_cols=58 Identities=33% Similarity=0.438 Sum_probs=56.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 175 KRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 175 r~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..+|+||++||.|||+++|++..+++.++..|+.+|..|+.+|..|+.|+..|+++|+
T Consensus 3 ~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 3 RKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5689999999999999999999999999999999999999999999999999999986
No 7
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.30 E-value=3.8e-12 Score=93.20 Aligned_cols=57 Identities=28% Similarity=0.415 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 169 KNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 169 k~dd~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
..+|.+..||.||++||+|||++++.+..+++.+|..|+.+|..|+.+|+.|+.++.
T Consensus 5 ~~~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 5 ESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CcccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357889999999999999999999999999999999999999999999999988764
No 8
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=98.65 E-value=4.4e-08 Score=69.87 Aligned_cols=50 Identities=28% Similarity=0.358 Sum_probs=46.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 175 KRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEEL 224 (256)
Q Consensus 175 r~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl 224 (256)
..|..+|.+||++||.+++....+++.+|..|+.||..|+.+|..|+.++
T Consensus 3 ~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 3 EVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667999999999999999999999999999999999999999998765
No 9
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=97.88 E-value=9.9e-05 Score=57.70 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=56.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 173 EYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 173 ~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+.++||-||..+|.-||.||.....+++.++..|..+.+.|+.++..+.+|++.+|.-+..
T Consensus 27 Kq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 27 KQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999987764
No 10
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=97.75 E-value=8.7e-05 Score=55.46 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=47.3
Q ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 171 TDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 171 dd~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
++.+..|+..|..|.|.+|+.+++...+++.+|..|+.+|..|..+++.|..++..|..-+
T Consensus 6 ~~~~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 6 QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345678899999999999999999999999999998766666666666666665555433
No 11
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=97.73 E-value=1e-06 Score=70.72 Aligned_cols=55 Identities=25% Similarity=0.258 Sum_probs=38.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 173 EYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 173 ~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
+.++||-||..||+.||.||.....+++.++..|..+.+.|+.+...|..|++.|
T Consensus 37 K~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~l 91 (107)
T 3a5t_A 37 KQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDAL 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSS
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999997555554444444444444444444333
No 12
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=97.23 E-value=0.0012 Score=47.99 Aligned_cols=44 Identities=32% Similarity=0.353 Sum_probs=32.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 175 KRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIE 218 (256)
Q Consensus 175 r~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie 218 (256)
..||.||..|+||||.|-|+.-+.-.+-+..-..||++|+.-|.
T Consensus 3 e~kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~l~k 46 (63)
T 2c9l_Y 3 EIKRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLLLK 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 46899999999999999888766655555555666766665443
No 13
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=96.77 E-value=0.0038 Score=42.76 Aligned_cols=37 Identities=32% Similarity=0.478 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..+++.+++.|+..|.+|..+|..|+.|..+||+++.
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 3578999999999999999999999999999999885
No 14
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=95.58 E-value=0.018 Score=41.70 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCCCCc
Q psy16107 202 KVKLLVKENERLQKRIELL-------SEELNVLRSLFTNVGVLPE 239 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L-------~kEl~~LK~ll~q~~~lpe 239 (256)
++..|++-|..|-.+|.+| ++|+..|..+|.+||++++
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqHgl~~e 56 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQHGLLGE 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 4555666666666666554 5789999999999999974
No 15
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.14 E-value=0.0079 Score=47.23 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=24.7
Q ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy16107 171 TDEYKRRRERNNIAVRKSREKAKIRSRETE 200 (256)
Q Consensus 171 dd~Yr~RReRNNiAaRKSReKrK~R~~el~ 200 (256)
.-++.+||.||.+||++||.+|..+...|.
T Consensus 60 ~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~ 89 (92)
T 1skn_P 60 LIRKIRRRGKNKVAARTCRQRRTDRHDKMS 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 345889999999999999999988876543
No 16
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=94.98 E-value=0.045 Score=38.63 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..++.|..||+.|+++|+.|+++++.|+.-|.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467889999999999999999999999987765
No 17
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=93.91 E-value=0.14 Score=33.97 Aligned_cols=30 Identities=17% Similarity=0.239 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEEL 224 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl 224 (256)
|...++.+|++|-.+|..|+.+|+.|+.-+
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 556677777777777776665555554433
No 18
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=93.89 E-value=0.1 Score=34.21 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLS 221 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~ 221 (256)
+|...++.||++|-.+|..|+.+|+.|+
T Consensus 1 eRMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3667788888888888877655554443
No 19
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=93.32 E-value=0.091 Score=34.30 Aligned_cols=30 Identities=30% Similarity=0.373 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
...++.||++|-.+|..|+ .|+..||.+|.
T Consensus 2 M~QLE~kVEeLl~~n~~Le-------~EV~RLk~Ll~ 31 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLE-------NEVARLKKLVG 31 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHH-------HHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhHHHH-------HHHHHHHHHhh
Confidence 4456777777777777655 45555555554
No 20
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=93.31 E-value=0.12 Score=34.31 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
|...++.+|++|..+|..|..+|+.|+..+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4566777777777777776666666555443
No 21
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=92.52 E-value=0.23 Score=32.58 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLS 221 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~ 221 (256)
+|...++.||++|-.+|..|..+|+.|+
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3566777778777777777555444443
No 22
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=91.79 E-value=0.13 Score=31.99 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 203 VKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
+..|+..|.+|+++|..|+-|+..|.
T Consensus 2 irrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 34688999999999999999988763
No 23
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=91.58 E-value=0.28 Score=32.52 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+|+.+|+...++|..+...|+.|+..||.++-+
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 467899999999999999999999999999864
No 24
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=91.43 E-value=0.36 Score=31.44 Aligned_cols=30 Identities=17% Similarity=0.333 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
|...++.||++|-.+|..|.. |+..||.+|
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~-------EV~RLk~lL 30 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXEN-------XLARIKXLL 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHH-------HHHHHHHHH
Confidence 356677788888777777555 555555555
No 25
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=91.32 E-value=0.19 Score=32.76 Aligned_cols=18 Identities=39% Similarity=0.222 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQK 215 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~ 215 (256)
++-.+-..|+.|..+|+.
T Consensus 11 eLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 11 ELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 333444445555554443
No 26
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=91.20 E-value=0.33 Score=31.81 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSE 222 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~k 222 (256)
+|...++.+|++|-.+|..|..+|+.|+.
T Consensus 1 ~RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 1 MKVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35567778888888888776655555543
No 27
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=90.71 E-value=0.27 Score=32.64 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+++.+|+.+.+.|-.+...|+.|+..||.++-.
T Consensus 1 eRMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 1 XEVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 356899999999999999999999999999864
No 28
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=90.35 E-value=0.44 Score=31.23 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
++..+||...+.|-.+-..|+.|+..||.+|.+
T Consensus 1 eRMnQLE~kVEeLl~~n~~Le~eV~rLk~ll~~ 33 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXKNXHLEXEVXRLKXLVXE 33 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 357899999999999999999999999999864
No 29
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=90.20 E-value=0.36 Score=31.66 Aligned_cols=27 Identities=11% Similarity=0.362 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLS 221 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~ 221 (256)
|...++.||++|-.+|..|..+|+.|+
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 566777788888877777655555444
No 30
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=90.17 E-value=0.56 Score=30.57 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
...++.||++|-.+|.. |+.|+..||.++
T Consensus 2 MnQLEdKVEell~~~~~-------le~EV~Rl~~ll 30 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYH-------NTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHH-------HHHHHHHHHHHh
Confidence 34555555555555555 555556666655
No 31
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=90.15 E-value=0.48 Score=30.89 Aligned_cols=16 Identities=25% Similarity=0.125 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16107 200 EEKVKLLVKENERLQK 215 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~ 215 (256)
-.+-..|+.|.++|+.
T Consensus 13 l~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 13 TSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 3344444444444443
No 32
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=89.87 E-value=0.51 Score=30.91 Aligned_cols=33 Identities=9% Similarity=0.112 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
++..+||...+.|-.+-..|+.|+..||.+|-+
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEXARIXKLLXE 33 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999999853
No 33
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=89.59 E-value=0.37 Score=29.95 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 204 KLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
..|+=||+.|.++|..|++.+..||+
T Consensus 3 dalefendaleqkiaalkqkiaslkq 28 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASLKQ 28 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHhccHHHHHHHHHHHHHHHHhcC
Confidence 35888999999999999999988873
No 34
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=89.44 E-value=0.45 Score=31.21 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
|...++.||++|-.+|.. |+.|+..||.+|.
T Consensus 2 RM~QLEdKVEeLl~~n~~-------Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYH-------IENELARIKKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHhhHH-------HHHHHHHHHHHHc
Confidence 345566666666666666 5566666666654
No 35
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=89.43 E-value=1.3 Score=31.78 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.-...+.+|+.+.+.|+.+...|..|+..|++++.+
T Consensus 27 RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678899999999999999999999999987754
No 36
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=89.02 E-value=2.5 Score=29.61 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCC
Q psy16107 201 EKVKLLVKENERLQKRIE-------LLSEELNVLRSLFTNVGVLP 238 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie-------~L~kEl~~LK~ll~q~~~lp 238 (256)
.++..|+.-|..|-.+|. .+++|+..|+.+|.+||.|+
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkqHgll~ 48 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQNGLLG 48 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcCCCC
Confidence 344445555555555554 35678899999999999763
No 37
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=88.97 E-value=0.43 Score=31.31 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQK 215 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~ 215 (256)
++-.+-..|+.|..+||.
T Consensus 12 eLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 12 EILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 334444555555555543
No 38
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=88.79 E-value=0.44 Score=35.36 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
+++.....|..||..|+.+|..|..|+..||
T Consensus 40 ~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 40 TLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444556666666666666666665543
No 39
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=87.70 E-value=1.1 Score=35.56 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNV 226 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~ 226 (256)
.-..+..+++.|+.||.+|+.+++.|+.++..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778899999999999999999988865
No 40
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=87.56 E-value=2.9 Score=32.21 Aligned_cols=49 Identities=8% Similarity=0.173 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 181 NNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 181 NNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
++.|+.+.=.+-+..+..+.+++..|+++.+.|..+|..|+.|...|..
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 3467777778888889999999999999999999999999999888764
No 41
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=87.52 E-value=0.93 Score=29.52 Aligned_cols=18 Identities=17% Similarity=0.140 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQK 215 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~ 215 (256)
++-.+-..|+.|.++||.
T Consensus 11 eLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 11 EIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 344444555555555554
No 42
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=87.13 E-value=1.9 Score=30.66 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Q psy16107 197 RETEEKVKLLVKENERLQKRIE-------LLSEELNVLRSLFTN 233 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie-------~L~kEl~~LK~ll~q 233 (256)
..+-..|+.|+.||..||++++ .|+.|...+|+++.+
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~ 49 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQ 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHH
Confidence 3566789999999999999876 577777778877765
No 43
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=87.04 E-value=0.83 Score=34.34 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSL 230 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~l 230 (256)
..+..+.+|+++...+...|..|+.+++.+|..
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334455666666666666666666666666553
No 44
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=86.86 E-value=3.3 Score=29.38 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+.+..|+.+...|..+...|..++..|+..+.+
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888876654
No 45
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=86.70 E-value=1 Score=29.55 Aligned_cols=32 Identities=25% Similarity=0.161 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
+++.+|+...++|-.+-..|+.|+..||.++-
T Consensus 1 ~RMnQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 1 MKVKQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 36789999999999999999999999999875
No 46
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=86.58 E-value=0.9 Score=29.77 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELL 220 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L 220 (256)
.++...++.+++|++.|..|..+|..|
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 344556666777777777777777655
No 47
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=86.18 E-value=3.9 Score=28.66 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+.+..|+.+...|..+...|..++..|+.-+.+
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888888888876654
No 48
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=86.08 E-value=0.92 Score=40.11 Aligned_cols=9 Identities=11% Similarity=0.409 Sum_probs=6.1
Q ss_pred CCCHHHHHH
Q psy16107 169 KNTDEYKRR 177 (256)
Q Consensus 169 k~dd~Yr~R 177 (256)
.-++.||..
T Consensus 93 ~Pse~YWk~ 101 (209)
T 2wvr_A 93 NPSSQYWKE 101 (209)
T ss_dssp SCCTTHHHH
T ss_pred CCcHHHHHH
Confidence 346789974
No 49
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=85.66 E-value=2.1 Score=29.95 Aligned_cols=34 Identities=32% Similarity=0.429 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
....+.+|+.+...|..+...|..++..|+..+.
T Consensus 20 Kk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 20 KKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788888888888888888888888877654
No 50
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=85.59 E-value=0.85 Score=29.91 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
++..+||...+.|-.+-..|+.|+..||.+|-+
T Consensus 1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk~lL~~ 33 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHHICNELARIKKLLGE 33 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CchhHHHHHHHHHHHccHHHHHHHHHHHHHhcc
Confidence 366899999999999999999999999998753
No 51
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=85.49 E-value=1.4 Score=28.93 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
|...++.||++|-.+|.. |+.|+..|+.+|
T Consensus 2 RMnQledKvEel~~~~~~-------l~nEv~Rl~~lL 31 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYH-------NANELARVAKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHH-------HHHHHHHHHHHh
Confidence 455566666666666665 555555666655
No 52
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=85.25 E-value=1.8 Score=27.68 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 203 VKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
+..|++|...|+++|..|+=|+..||+
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345666777777777777777776665
No 53
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=84.95 E-value=4.3 Score=31.24 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 208 KENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 208 ~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.||..|..+|+.|+.|+..||..+..
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~e 71 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKE 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666655543
No 54
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=84.94 E-value=1.9 Score=28.22 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQK 215 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~ 215 (256)
+-.+...|+.|..+|+.
T Consensus 13 l~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 13 VASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 33344445555544443
No 55
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=84.64 E-value=1.7 Score=34.67 Aligned_cols=31 Identities=39% Similarity=0.517 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQK-------RIELLSEELNVLR 228 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~-------~Ie~L~kEl~~LK 228 (256)
+++.++..|+.||.+|+. +|.+|+.||..|+
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~ 78 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLR 78 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 445555555555555554 5555555555554
No 56
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=83.82 E-value=8 Score=28.30 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.-+..|..++..|+.+++.|+.++..|+.-+.+
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888888888888877765
No 57
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=83.42 E-value=3.8 Score=31.13 Aligned_cols=40 Identities=10% Similarity=0.020 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+-..++..++..|..|...|+.+|+++.-++..|+.--.+
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4457789999999999999999999999999988764443
No 58
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=83.35 E-value=0.097 Score=41.03 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=18.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHH
Q psy16107 173 EYKRRRERNNIAVRKSREKAK 193 (256)
Q Consensus 173 ~Yr~RReRNNiAaRKSReKrK 193 (256)
+..+||-||.+||++||.+|.
T Consensus 66 rdiRRRgKNKvAAqnCRKRKl 86 (91)
T 2kz5_A 66 RDIRRRGKNKVAAQNYRKRKL 86 (91)
T ss_dssp HHHHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 478999999999999997653
No 59
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=83.22 E-value=3.4 Score=28.41 Aligned_cols=34 Identities=38% Similarity=0.521 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKR-------IELLSEELNVLRSLF 231 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~-------Ie~L~kEl~~LK~ll 231 (256)
.++.+|..|+.||+.|+++ |.-|++|+..||.-+
T Consensus 7 qlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777777665 667888888887643
No 60
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.33 E-value=6.4 Score=36.92 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
++.+|++..+.-++++.+|++|+..++
T Consensus 545 ~~~~le~~~~~~~~~~~~l~~e~~~~~ 571 (597)
T 3oja_B 545 ENIALEKQLDNKRAKQAELRQETSLKR 571 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 333333333344444444444444443
No 61
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=81.79 E-value=4.1 Score=35.35 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 187 KSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 187 KSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
-..+--|+-+.+++..+..+++.|..|+.++..|+.|++.+|.-+.+
T Consensus 35 EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~ 81 (189)
T 2v71_A 35 EFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH 81 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788899999999999999999999999999999999988776
No 62
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=81.68 E-value=2.9 Score=31.19 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 203 VKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
+..|+.++..|..+++.|+.+...|+.-|.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555554443
No 63
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=81.66 E-value=5.6 Score=30.57 Aligned_cols=55 Identities=24% Similarity=0.231 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 168 DKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 168 ~k~dd~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..-+..||..= | ++||.--.+.-++-+.|-.+.+.|+.+|..|+.+++.||.+..
T Consensus 23 e~Pse~YWk~l-----A-----E~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 23 ENPSSQYWKEV-----A-----EKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp CCHHHHHHHHH-----H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHH-----H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467899752 2 2222222333334455556666666666666666666666654
No 64
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=81.52 E-value=4.9 Score=30.68 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Q psy16107 196 SRETEEKVKLLVKENERLQKRIEL-------LSEELNVLRSLFTN 233 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~-------L~kEl~~LK~ll~q 233 (256)
..-++.++++|+.+|..|..++++ |..|+..|++-...
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 334555666677776665555555 55566666654443
No 65
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=80.71 E-value=1.5 Score=41.23 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELN 246 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~ 246 (256)
.+++++++.|+++...|..+|+.++.++..|++.|.....+-..+|++|.
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~ 55 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQ 55 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777888888888887777777777653333334455444
No 66
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=80.16 E-value=12 Score=27.62 Aligned_cols=54 Identities=15% Similarity=0.245 Sum_probs=29.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 175 KRRRERNNIAVRKSREKAKIRSRETE--------------------EKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 175 r~RReRNNiAaRKSReKrK~R~~el~--------------------~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
..||.--|++-|+-|++=+.+-.++. +-+..|+.++..|+.+++.|+.+++..+
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34666666777776665444444432 2334555555555555555555555443
No 67
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=80.02 E-value=2.7 Score=33.29 Aligned_cols=31 Identities=32% Similarity=0.315 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
++..+.+...+++..|+.+|..|+.|+..+|
T Consensus 86 ~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 86 EWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444566678889999999999999999887
No 68
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=79.49 E-value=4.5 Score=27.50 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.-+.+|..-.+.|.+||..|+..++.|...|..
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345677788888999999999999999988876
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.26 E-value=12 Score=34.41 Aligned_cols=45 Identities=20% Similarity=0.104 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 189 REKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 189 ReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
|++.++....++++.+.|++||++|+..++++..++..-+..+.+
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 430 QNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHH
Confidence 344556666778888899999999999999988888766665554
No 70
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=78.70 E-value=19 Score=29.35 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
+.+.+.++++++.|+.++..|++++..|
T Consensus 102 ~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 102 QIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444
No 71
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=77.88 E-value=4.1 Score=26.04 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEEL 224 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl 224 (256)
.++.+|.+-+.||-.|..+|.+|+-|.
T Consensus 5 qlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 466677788888888888888887653
No 72
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=77.65 E-value=9.2 Score=31.19 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 172 DEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 172 d~Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
++|...++++...-+.-. ........+..++..+..+++.++++++.|++++..|..-+.
T Consensus 68 dEl~k~~~~~~~L~~~l~-~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIE-NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555443332222 223333445555555555555555555666666555554443
No 73
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=77.19 E-value=11 Score=26.14 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16107 206 LVKENERLQKRIELLSEE 223 (256)
Q Consensus 206 Le~EN~~Lk~~Ie~L~kE 223 (256)
|++-.+.|+.+|..|+.|
T Consensus 29 lekiianlrdeiarlene 46 (52)
T 3he5_B 29 LEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 74
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=77.15 E-value=3 Score=28.44 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRI 217 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~I 217 (256)
.+..++++++..|+.||.-||+-|
T Consensus 17 ~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHh
Confidence 456788888888888888888765
No 75
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=76.73 E-value=4.5 Score=29.71 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
.=...++.++..|+.+.+.|+.++..|+.++..|
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677777888888888888888888877654
No 76
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=76.29 E-value=11 Score=26.29 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
|..++..++..|...|.+|-.-+.....+|..|++.+..
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566677777788888777777777777777776654
No 77
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=75.51 E-value=3.5 Score=28.85 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIE 218 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie 218 (256)
...+++.++..|.++++.|+++++
T Consensus 27 E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 27 ELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555555554443
No 78
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=75.46 E-value=9.8 Score=29.26 Aligned_cols=26 Identities=42% Similarity=0.509 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 208 KENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 208 ~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.||..|..+|+.+..|+..||.....
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~ 63 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666555555555555554443
No 79
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=75.38 E-value=14 Score=30.17 Aligned_cols=32 Identities=28% Similarity=0.270 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
+.++++|+.|+..|..++..+..|++.||.-.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55677888888888888887777777777544
No 80
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=75.21 E-value=12 Score=27.91 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 207 VKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 207 e~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
+.-...|.++|.+...++..|+..|
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555444
No 81
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=75.19 E-value=6 Score=29.54 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
+.+++..++.+|..|+.+|..|+..+..-+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777766665443
No 82
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=75.05 E-value=3.3 Score=26.50 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 209 ENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 209 EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
|...|+++|..|++|+..||.-+
T Consensus 3 eiaalkqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777766543
No 83
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=74.55 E-value=2.6 Score=29.62 Aligned_cols=25 Identities=12% Similarity=0.418 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEE 223 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kE 223 (256)
+...++.|.+||..|+.+|+.|+.+
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566677777777777666654
No 84
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=74.26 E-value=4.5 Score=25.56 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 202 KVKLLVKENERLQKRIELLSEEL 224 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl 224 (256)
-+..|+.||..|+++|++|-..+
T Consensus 7 llasleaenkqlkakveellakv 29 (31)
T 1p9i_A 7 LLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999886543
No 85
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=74.23 E-value=6.2 Score=30.21 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSE 222 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~k 222 (256)
.||..||.+|..|..+|..|..
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5677777777777777776653
No 86
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=74.12 E-value=20 Score=25.08 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+.+..|+.+...|..+...|..++..|+.-+.+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999987765
No 87
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=73.76 E-value=4.6 Score=24.84 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 204 KLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
-+|+.|.-+|+.+|..|+.|+..||
T Consensus 3 yqlkdevgelkgevralkdevkdlk 27 (27)
T 3v86_A 3 YQLKDEVGELKGEVRALKDEVKDLK 27 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhhHHHHHHHhHHHHHHHHHhccC
Confidence 3566677777777777777776653
No 88
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=73.70 E-value=3.4 Score=31.86 Aligned_cols=29 Identities=17% Similarity=0.115 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 204 KLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
+.|+.+...|+.++.+|.+++..++.-|.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666677777777777777776666554
No 89
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=73.61 E-value=11 Score=29.01 Aligned_cols=33 Identities=24% Similarity=0.196 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
++-+.|-++.+.++.+|..|+.|+..|+.+-.+
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666777777777777766554
No 90
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=71.68 E-value=3.5 Score=32.18 Aligned_cols=30 Identities=30% Similarity=0.296 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSL 230 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~l 230 (256)
.+.++|+.+...|+.+|..|+.|++.|++.
T Consensus 7 ~~~~~l~~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 7 HRMKQLEDKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456789999999999999999999999874
No 91
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=71.56 E-value=3.7 Score=38.80 Aligned_cols=50 Identities=18% Similarity=0.180 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELN 246 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~ 246 (256)
..++.++.+|++.+..|+.++++++.|+..+++.|.+....--.++++|.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777777777777777666666553333344444443
No 92
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=71.44 E-value=4.2 Score=30.91 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
++|+.|+....+|..++.+|+.|...||.+..
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45677888888888888888888888887654
No 93
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=71.25 E-value=13 Score=28.43 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 192 AKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 192 rK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
-|.-...++.++.+.+..|..|..+|+.|++++..|+
T Consensus 36 vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 36 IRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455677888889999999999999999988865
No 94
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=70.92 E-value=13 Score=26.18 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.++.-|..|+.+|..|.+.|..|++.+..|..
T Consensus 21 klenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 21 KLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 45566788999999999999999999987754
No 95
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=70.82 E-value=5.3 Score=36.10 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.+++.++..|...|..|+..+..+++|+..||.-+.
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEle 92 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 92 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666665553
No 96
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=69.21 E-value=7 Score=28.85 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..+++.+|+.++..-..+|.+|+.+++.++.+|.
T Consensus 23 Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456788889999999999999999999998886
No 97
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.04 E-value=14 Score=34.53 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+..++.+.|++|+.+|+.+++..++.+..+++-+..
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~ 569 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSL 569 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3344555566677777777777777777766665554
No 98
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=67.79 E-value=4.2 Score=30.94 Aligned_cols=27 Identities=37% Similarity=0.273 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 190 EKAKIRSRETEEKVKLLVKENERLQKR 216 (256)
Q Consensus 190 eKrK~R~~el~~kv~~Le~EN~~Lk~~ 216 (256)
+-=|.+..++.++..+||.||.-||.-
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677788888888888888888754
No 99
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=67.72 E-value=27 Score=29.84 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 184 AVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 184 AaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.-|+.|....+...+++.++..|..|.++++.++..+..+...|-+-+.
T Consensus 80 qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~ 128 (168)
T 3o0z_A 80 AERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLN 128 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777788888888887777777766666666555555444
No 100
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=67.65 E-value=12 Score=28.06 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
-+..|+.++..|..+++.|+.+...|+.-|.+
T Consensus 53 YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 53 YILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666655543
No 101
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=67.03 E-value=14 Score=33.87 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 206 LVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 206 Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
|+++...-.++|++|+.|+.+|...|.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444556666666655555444
No 102
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=66.93 E-value=5.4 Score=30.25 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
+.+++..++.+|..|+.+|..|+..+..-+
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666555433
No 103
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=66.86 E-value=26 Score=25.70 Aligned_cols=37 Identities=27% Similarity=0.349 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+...+...++.+...|..+|..|+.+++.+..-|..
T Consensus 30 ~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 30 KAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677777778888888888887777666554
No 104
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=66.53 E-value=31 Score=24.35 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.++...|+.+...|+.+...|+.++..|+.-+.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888888776544
No 105
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=66.07 E-value=24 Score=27.04 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
...+.+..+++.|...|..+|..|+.+++.+..-|..
T Consensus 33 k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 33 KAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777777777777777666554
No 106
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=65.39 E-value=11 Score=28.06 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 191 KAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 191 KrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
++..=...++++...|..|++.|+.+++.|.+++..|
T Consensus 44 kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 44 KAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4455567788888899999999999999999888754
No 107
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=65.37 E-value=40 Score=25.19 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 193 KIRSRETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 193 K~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
..=...++.+...|..+.+.|+.+..+|.+++..|+
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334556777777777777777777777777777765
No 108
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=64.53 E-value=24 Score=26.90 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16107 213 LQKRIELLSEELNVLR 228 (256)
Q Consensus 213 Lk~~Ie~L~kEl~~LK 228 (256)
|..++++|+.|...+.
T Consensus 53 L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 53 LERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555544333
No 109
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=64.39 E-value=12 Score=26.27 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.++.+|..+...|..+|.+|..++..||.-+.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777777775443
No 110
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=64.07 E-value=20 Score=28.62 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+..+..++.++++..-+.|-.++-.|+.|+..||.++.=
T Consensus 70 QI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~~ 108 (114)
T 2xzr_A 70 QINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIKL 108 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 345566778888889999999999999999999998763
No 111
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=64.07 E-value=28 Score=27.40 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 205 LLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
...--...|..+|+.|+.|+.+||.+..+
T Consensus 80 ~~~l~r~dLE~~iesL~eEl~FLKk~hee 108 (119)
T 3ol1_A 80 NASLARLDLERKVESLQEEIAFLKKLHEE 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344567888999999999999987764
No 112
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=63.41 E-value=3.2 Score=27.48 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16107 200 EEKVKLLVKENERLQKRIELL 220 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L 220 (256)
-.+|..||.+|..|..+|..|
T Consensus 19 idkVR~LE~~N~~Le~~i~~l 39 (39)
T 1gk7_A 19 IDKVRFLEQQNKILLAELEQL 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 467888999999998888643
No 113
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=63.19 E-value=12 Score=25.54 Aligned_cols=45 Identities=27% Similarity=0.306 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 184 AVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 184 AaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
|+-||--.+-.++----+++..|+.|...|.+++..|+..++.||
T Consensus 3 aalkselqalkkegfspeelaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 3 AALKSELQALKKEGFSPEELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444333333322234555666777777777666666666554
No 114
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=63.07 E-value=23 Score=31.68 Aligned_cols=66 Identities=17% Similarity=0.318 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCchhh-------HHHHHhhhc-CCCC
Q psy16107 190 EKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGV----LPEHLH-------RELNKHFDS-YPHV 255 (256)
Q Consensus 190 eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~----lpe~~~-------~ev~~~l~~-~~~~ 255 (256)
+...++..+++.+++++...-.....+|..++.-+..|-+-....|+ +||... +-+.+++++ ||.+
T Consensus 9 d~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL 86 (233)
T 2yko_A 9 DQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVPESDVENGTKLENTLQDIIQENFPNL 86 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEeecCCCcccccccHHHHHHHHHHHhCCCC
Confidence 34456777777777777777777777888888877777777777666 887654 233455554 6543
No 115
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=62.83 E-value=9 Score=33.42 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 189 REKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 189 ReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..+.+++...-..-|..|..||..|..+++....|++.|+..+.
T Consensus 8 K~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~ 51 (190)
T 4emc_A 8 KNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQID 51 (190)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555666666666666666666666665555443
No 116
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=62.36 E-value=44 Score=25.61 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16107 211 ERLQKRIELLSEELNVLR 228 (256)
Q Consensus 211 ~~Lk~~Ie~L~kEl~~LK 228 (256)
..-+.+|+.|+++|..++
T Consensus 54 ~~h~~ei~~le~~i~rhk 71 (84)
T 1gmj_A 54 SHHAKEIERLQKEIERHK 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 117
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=62.33 E-value=3.2 Score=36.57 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Q psy16107 204 KLLVKENERLQKR---IELLSEELNVLRSLFTN 233 (256)
Q Consensus 204 ~~Le~EN~~Lk~~---Ie~L~kEl~~LK~ll~q 233 (256)
++|++||.+|+.+ +++|+.|...||.+|.-
T Consensus 29 ~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 29 QHLKERLEELAQLESEVADLKKENKDLKESLDI 61 (255)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455555555543 34566777888887663
No 118
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=61.72 E-value=23 Score=26.87 Aligned_cols=8 Identities=13% Similarity=0.426 Sum_probs=5.1
Q ss_pred CCHHHHHH
Q psy16107 170 NTDEYKRR 177 (256)
Q Consensus 170 ~dd~Yr~R 177 (256)
-++.||+.
T Consensus 13 Pse~YWk~ 20 (79)
T 2zxx_A 13 PSSQYWKE 20 (79)
T ss_dssp TTCTHHHH
T ss_pred CcHHHHHH
Confidence 35678864
No 119
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=60.18 E-value=14 Score=28.55 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
....||.++..|..+|+.|..|+..+..-+
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~ 78 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARER 78 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999998877543
No 120
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=59.98 E-value=10 Score=30.47 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 208 KENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 208 ~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+|..+|+++|+.+++....||++|.+
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ 29 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQT 29 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888888888876
No 121
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=59.97 E-value=19 Score=27.52 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 192 AKIRSRETEEKVKLLVKENERLQKRIELLSEEL 224 (256)
Q Consensus 192 rK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl 224 (256)
-.+|..+.+.+.+.|+..|..|-.+|.+|+...
T Consensus 47 e~~r~~e~e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 47 EQQRAKDLENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 345666777888999999999999999998764
No 122
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=59.62 E-value=26 Score=26.30 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.+..+.+.|+.+...|..++..+++++..|+.-|.
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777777766665554
No 123
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=59.34 E-value=25 Score=33.04 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
....|..+-..|+.+|..|+.++..+..
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (421)
T 1ses_A 65 EKEALIARGKALGEEAKRLEEALREKEA 92 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666665554443
No 124
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=58.96 E-value=28 Score=26.42 Aligned_cols=22 Identities=50% Similarity=0.655 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16107 208 KENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 208 ~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.||..|..+|++++.|+..||.
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~Lke 55 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRK 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554444444443
No 125
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=58.94 E-value=12 Score=33.76 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.+...+..+.+.|..+...|+.+|..|+.|++.|+.
T Consensus 61 ~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 61 ARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334566677788889999999999999999999885
No 126
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=58.65 E-value=19 Score=27.50 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.-..++...+..+..+|.+|..+|..|..++..+|.
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566778888888888888888888888888875
No 127
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=58.28 E-value=35 Score=36.01 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
++++++..|++||..|+.+++.|+..+.
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666664433
No 128
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=57.59 E-value=13 Score=24.58 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16107 208 KENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 208 ~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.||++|.+.|++-..|+..||.
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~ 28 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKK 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777777766664
No 129
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=57.56 E-value=40 Score=32.66 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 203 VKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
+..|..+-..|+.+|..|+.++..+.
T Consensus 118 ~~~l~~~~~~l~~~i~~l~~~~~~~~ 143 (501)
T 1wle_A 118 YQSLRARGREIRKQLTLLYPKEAQLE 143 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666655555444
No 130
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=56.82 E-value=8.8 Score=34.84 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSL 230 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~l 230 (256)
..++++.|+.+|.+|+.+|+.|++++..++.-
T Consensus 183 ~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 183 DAFKLESLEAKNRALNEQIARLEQERSTANKA 214 (315)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 35567888888888888888888887777764
No 131
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=56.69 E-value=0.27 Score=38.46 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=17.3
Q ss_pred HHHHHHHhhhHHHHHHHHHH
Q psy16107 173 EYKRRRERNNIAVRKSREKA 192 (256)
Q Consensus 173 ~Yr~RReRNNiAaRKSReKr 192 (256)
..++||-||.+||+.||.+|
T Consensus 66 rdiRRRgKNkvAAqnCRKRK 85 (90)
T 2lz1_A 66 RDIRRRGKNKVAAQNCRKRK 85 (90)
T ss_dssp HHHHHHSCSCCCCCCCSCCC
T ss_pred HHHHHhhhhHHHHHHcchhh
Confidence 47899999999999999654
No 132
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=56.55 E-value=33 Score=23.85 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
...+..+-..|.....+-+.+|..|+.+|+.|
T Consensus 18 l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 18 IDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666666666666666666654
No 133
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=56.01 E-value=33 Score=25.36 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+..+.+.++.+...|..++..+++++..|+.-|.+
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667777777777777777777777766543
No 134
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=55.99 E-value=16 Score=23.26 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
+|.+|++|...-.++--+|++|+..|..
T Consensus 2 evaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4678889988888888899999888753
No 135
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=55.48 E-value=49 Score=24.97 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 191 KAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 191 KrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
....++.+++.+|..|+...+.=+.+=+.++.|+..+-++|-
T Consensus 17 ~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld 58 (79)
T 3cvf_A 17 DLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLD 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777788888887777777777777777777766665
No 136
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=55.40 E-value=51 Score=24.47 Aligned_cols=42 Identities=17% Similarity=0.326 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 191 KAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 191 KrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
....++.+++.+|..|+...+.=+.+=+.++.|+..+-++|-
T Consensus 11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566677777777777777777777777777777766664
No 137
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=55.16 E-value=25 Score=33.49 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 204 KLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
.+|..+-..|+.+|..|+.++..+.
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELK 96 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554433
No 138
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=55.15 E-value=15 Score=29.41 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
.++..+++.|..|+..|+++|+.|+.++....
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37778899999999999999999998877653
No 139
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=55.09 E-value=47 Score=25.27 Aligned_cols=32 Identities=13% Similarity=0.031 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.+..+++.+...|..+-..|+.+|..|+.-+.
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666666665555444
No 140
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=54.66 E-value=6.3 Score=34.69 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 204 KLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..|.+||++|++++.+|+.++..+..+-.
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~ 50 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLESEVADLKK 50 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777766666666665543
No 141
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=54.40 E-value=41 Score=30.89 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+++.+-+..+++.+..+.+|+.|++|.+.++.++.+
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (487)
T 3oja_A 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGE 460 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhh
Confidence 3344444445566666667777777777777776655
No 142
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=54.24 E-value=51 Score=24.66 Aligned_cols=31 Identities=16% Similarity=0.070 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
.+...|..+...|+.++..|+.++..|+.-+
T Consensus 71 ~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 71 LDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555544444444443
No 143
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=54.03 E-value=24 Score=26.23 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 208 KENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 208 ~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+|.+.|..+|+.|+.++..|...|.+
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34556666666666666666666665
No 144
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=53.53 E-value=57 Score=23.89 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
++.+...|+.+++.+..+++.|++|-+
T Consensus 7 iKkkmqaLk~Ekdna~e~~e~lE~ERd 33 (75)
T 3mtu_A 7 IKKKMQMLKLDKENALDRAEQAEADKD 33 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556688888889999999999644
No 145
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=53.53 E-value=55 Score=24.80 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.+.+..+++.+...|+.+|..|+.+++.+..-|.
T Consensus 35 ~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 35 AEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666665555444
No 146
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=53.18 E-value=68 Score=23.89 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..+..+++.....|..+-..|+.+|..|+.-+..
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777777777777776665543
No 147
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=52.95 E-value=32 Score=25.29 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHH
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELN 246 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~ 246 (256)
++.+.-.|..+||++|-.|+.|++..+.-+..---+|.-+.-.+.
T Consensus 4 Elr~iLqERNELKa~vf~lqeEL~yY~~e~l~~~~~p~~ll~a~k 48 (65)
T 1yhn_B 4 EFEQILQERNELKAKVFLLKEELAYFQRELLTDHRVPSLLLEAMK 48 (65)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHH
Confidence 456667888899999999999999999877653334544444433
No 148
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=52.77 E-value=62 Score=23.36 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=10.3
Q ss_pred HHHHHhhhHHHHHHHHHHHH
Q psy16107 175 KRRRERNNIAVRKSREKAKI 194 (256)
Q Consensus 175 r~RReRNNiAaRKSReKrK~ 194 (256)
..+|.--|.+-|+-|.+=+.
T Consensus 10 ~~~R~~hn~~Er~RR~~in~ 29 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKD 29 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 34555555555555544333
No 149
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=52.76 E-value=46 Score=24.65 Aligned_cols=39 Identities=13% Similarity=0.015 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.|..+++.++..++.-.+.|-..|....++++.|+..+.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~ 52 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIR 52 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666666666555444
No 150
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=52.21 E-value=56 Score=22.62 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 205 LLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
+|+.+-..|.+-|..|..|+..|..-+
T Consensus 21 qlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 21 QLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556666665555443
No 151
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=51.87 E-value=23 Score=30.56 Aligned_cols=15 Identities=53% Similarity=0.589 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy16107 202 KVKLLVKENERLQKR 216 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~ 216 (256)
++..|.++|++|+.+
T Consensus 160 ~n~~LqkeNeRL~~E 174 (184)
T 3w03_C 160 KNEHLQKENERLLRD 174 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 152
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=51.11 E-value=27 Score=36.77 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16107 208 KENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 208 ~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.|+..++.+|..|++|++.|+.
T Consensus 977 ~e~~~~~~~v~~L~~e~~~l~~ 998 (1080)
T 2dfs_A 977 EEAKNATNRVLSLQEEIAKLRK 998 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 153
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=50.88 E-value=21 Score=26.99 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16107 211 ERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 211 ~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..|..+|+.|+.|+..||+.+.
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE 44 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQ 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 4444555555555555554443
No 154
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=50.70 E-value=54 Score=25.84 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16107 194 IRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGV 236 (256)
Q Consensus 194 ~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~ 236 (256)
+...++..++..|+.|.-.|..+|..-..||..|+.-+.+.|.
T Consensus 49 e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dlgK 91 (107)
T 1ytz_T 49 DKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQAQK 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHhcC
Confidence 4556678888899999999999999999999999988887654
No 155
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=50.47 E-value=59 Score=22.40 Aligned_cols=31 Identities=29% Similarity=0.320 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
+++.-|+...+|.+.|..|+.++..-|.-..
T Consensus 6 ~aefAERsV~KLek~ID~LEdeL~~eKek~~ 36 (52)
T 2z5i_A 6 KNYHLENEVARLKKLVDDLEDELYAQKLKYK 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444455555555555555555554444333
No 156
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=50.03 E-value=50 Score=32.05 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 204 KLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
..|..+-..|+.+|..|+.++..+.
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~ 98 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEAD 98 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566655555555433
No 157
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=49.81 E-value=35 Score=26.92 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNV 226 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~ 226 (256)
++....+.|.+.|+.++.+|++.++.
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~ 36 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDN 36 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555554443
No 158
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=49.72 E-value=83 Score=25.63 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..+++.+++.|..+.....++|+.|.++...|..-+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 5556666666666666666666666666665554443
No 159
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=49.48 E-value=48 Score=23.73 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+..+|.+|.+||.+|++-+++-++--..|..++..
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk 49 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRK 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888877766655555555544
No 160
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=49.14 E-value=31 Score=25.84 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
-+..+.-....|..+|+.|+.|+.+||.
T Consensus 57 dvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 57 DVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555667888899999999998875
No 161
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=48.57 E-value=36 Score=22.17 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 206 LVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 206 Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+.++|....+.|+.|+++...|...+..
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 4567777777777777777777765543
No 162
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=48.56 E-value=57 Score=25.68 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16107 190 EKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVG 235 (256)
Q Consensus 190 eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~ 235 (256)
++=++...++..++..|+.|.-.|..+|..-..||..|+.-+.+.|
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dlg 90 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDNQ 90 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3445666778888999999999999999999999999998877754
No 163
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=47.51 E-value=64 Score=22.44 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 191 KAKIRSRETEEKVKLLVKENERLQKRIELLSEEL 224 (256)
Q Consensus 191 KrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl 224 (256)
|=|+-...+-.+|.+|+.....+.++|+.|++=+
T Consensus 8 kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 8 RLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 4455556667777777777777777777776644
No 164
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=46.04 E-value=63 Score=24.66 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 193 KIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 193 K~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
-+...++..+|.+|+.|...-..++..-+.|+..|+.+|..
T Consensus 25 ~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 25 LQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44555666677777777766666776667777777777654
No 165
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=45.90 E-value=45 Score=24.46 Aligned_cols=30 Identities=20% Similarity=0.051 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 192 AKIRSRETEEKVKLLVKENERLQKRIELLS 221 (256)
Q Consensus 192 rK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~ 221 (256)
+-.=...++.++..|+.||+.|+.+|.+.+
T Consensus 48 Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344556778888888888888888887654
No 166
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=45.81 E-value=52 Score=24.62 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.++..++..+..+|.+|..+|..++..++.+|.-+..
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~ 39 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 39 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888888888888766543
No 167
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=45.57 E-value=28 Score=27.95 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 205 LLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
+|.++..+|.++|..|+.+|+.|+..+.
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa~k 31 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETARK 31 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777776544
No 168
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=45.39 E-value=22 Score=24.24 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16107 213 LQKRIELLSEELNVLRS 229 (256)
Q Consensus 213 Lk~~Ie~L~kEl~~LK~ 229 (256)
|..+|..|+..|..|+.
T Consensus 49 L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 49 LQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 169
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=45.16 E-value=80 Score=24.15 Aligned_cols=26 Identities=38% Similarity=0.465 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 203 VKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
+..-.++..+|..+|+.+++-|..|+
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555555555555555555544
No 170
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=44.84 E-value=50 Score=26.18 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRSLFTNV 234 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~ 234 (256)
+..+..++.+.|+..+..|+.++..|+..|.+.
T Consensus 52 e~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 52 QYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666667777777788888888774
No 171
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=44.60 E-value=1.2e+02 Score=24.22 Aligned_cols=47 Identities=11% Similarity=-0.016 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 187 KSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 187 KSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
|-+.=|+.-+..+.++.+.-..+...|..+|..-+..|..|+.-|.+
T Consensus 24 k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq 70 (112)
T 1x79_B 24 KTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQ 70 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666677888888888889999999999999999999887
No 172
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=43.99 E-value=12 Score=30.09 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIE 218 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie 218 (256)
..+|..++.+|+-||..||++|.
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666777777777777777765
No 173
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=43.08 E-value=46 Score=25.22 Aligned_cols=34 Identities=24% Similarity=0.166 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
.+-.+|++|..|++.|+.++..++.-...++.-+
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri 67 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKN 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666666666655555555433
No 174
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=43.07 E-value=1e+02 Score=29.83 Aligned_cols=35 Identities=11% Similarity=0.014 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..++..++.+|..+...|.+++.+++.++. .+++.
T Consensus 118 ~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~---~~l~~ 152 (501)
T 1wle_A 118 YQSLRARGREIRKQLTLLYPKEAQLEEQFY---LRALR 152 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHh
Confidence 346778888888888888888888877765 34555
No 175
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=42.97 E-value=1.1e+02 Score=25.81 Aligned_cols=8 Identities=0% Similarity=-0.047 Sum_probs=3.1
Q ss_pred HHHHHHhh
Q psy16107 174 YKRRRERN 181 (256)
Q Consensus 174 Yr~RReRN 181 (256)
++.-|++.
T Consensus 76 l~~I~~e~ 83 (175)
T 3lay_A 76 AQKIYDDY 83 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33334333
No 176
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=42.95 E-value=87 Score=22.18 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 203 VKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
+...+.|..+|+..|..|+.||+.||
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44457778888888888888888776
No 177
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=42.89 E-value=17 Score=32.12 Aligned_cols=38 Identities=21% Similarity=0.174 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 187 KSREKAKIRSRETEE-------KVKLLVKENERLQKRIELLSEEL 224 (256)
Q Consensus 187 KSReKrK~R~~el~~-------kv~~Le~EN~~Lk~~Ie~L~kEl 224 (256)
|.|+.+...-.+... +.++|..||.+|+++|+.|+.++
T Consensus 134 ~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~ 178 (250)
T 2ve7_C 134 HFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEV 178 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554444443 34444444444444444444443
No 178
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=42.84 E-value=37 Score=31.86 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 193 KIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 193 K~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
++...++..++.+|..+...|+.++.+++.++. .+++.
T Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 100 (421)
T 1ses_A 63 PEEKEALIARGKALGEEAKRLEEALREKEARLE---ALLLQ 100 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHh
Confidence 344567778888888888888888888887764 45555
No 179
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=42.13 E-value=40 Score=32.03 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
...++..++.+|..+...|+.++.+++.++. .+++.
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 105 (455)
T 2dq0_A 70 PVDELLAKSREIVKRIGELENEVEELKKKID---YYLWR 105 (455)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHh
Confidence 3456778888888888888888888887764 45555
No 180
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=42.11 E-value=61 Score=25.38 Aligned_cols=8 Identities=13% Similarity=0.451 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy16107 208 KENERLQK 215 (256)
Q Consensus 208 ~EN~~Lk~ 215 (256)
.+|.+|..
T Consensus 34 ~e~a~l~l 41 (119)
T 3ol1_A 34 NDKARVEV 41 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 181
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=41.97 E-value=81 Score=21.55 Aligned_cols=36 Identities=31% Similarity=0.292 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+++++|..|+.-.+.|..+.+.|-.|...-..-|.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKq 37 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQ 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888877776655444443
No 182
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=41.79 E-value=87 Score=23.70 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHH
Q psy16107 205 LLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHREL 245 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev 245 (256)
+-+.|-...++..++-+..+..++.++.+-|+-|+.+..-+
T Consensus 42 ERree~~~~~~~~~er~~Kl~~~~e~l~~~GI~~eeL~~~~ 82 (86)
T 3nr7_A 42 ERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSM 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhh
Confidence 44555555566666677779999999999999998876443
No 183
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=41.71 E-value=89 Score=22.44 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 190 EKAKIRSRETEEKVKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 190 eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
.|=|+-+..+-.++..|+..+.+..++|+.|.+-+.
T Consensus 14 ~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 14 LRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777888999999999999999998887654
No 184
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=41.70 E-value=44 Score=28.16 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
++++.|+.|+.+++.+|++-+.+|+.|-
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~ 32 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELI 32 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776655555443
No 185
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=41.03 E-value=60 Score=25.46 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..+.+..|.++.+.|+.+.+.|.++++.|..-|.+
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888888888888888877776
No 186
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=40.58 E-value=1.5e+02 Score=26.20 Aligned_cols=53 Identities=13% Similarity=0.248 Sum_probs=40.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 179 ERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 179 eRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.|..+|.|=.+-|+ +...+..++++...|+..+.+.+++..+.+..+|+..-.
T Consensus 165 Ik~yLa~R~~~lK~--kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T 3q0x_A 165 VKQFLAFRLSEVKG--TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDK 217 (228)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666555554 556677888899999999999999999999999886654
No 187
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=40.52 E-value=1e+02 Score=22.36 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 192 AKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 192 rK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
...+....+.+++..+..+..+...|..|++.+..|..-|
T Consensus 18 a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~el 57 (81)
T 1ic2_A 18 ALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDEL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444333
No 188
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=40.42 E-value=68 Score=29.58 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..++..|+.....++.+|.+|+..|..|+..+.
T Consensus 25 ~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666666666666665544
No 189
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=39.00 E-value=67 Score=24.80 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
..+...++.|++.-..++.+|..+..++..+
T Consensus 98 ~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 98 NELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666665544
No 190
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=38.94 E-value=1.5e+02 Score=23.61 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSL 230 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~l 230 (256)
...++.++..|..+|..|+.+|..|+...+.|..-
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 44578888888888888888888888888877543
No 191
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=38.80 E-value=36 Score=23.01 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNV 226 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~ 226 (256)
.++..+-+.||+-...|..+++.|...+..
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456677777888888888888888777654
No 192
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=38.69 E-value=87 Score=30.33 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=13.6
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHH
Q psy16107 207 VKE-NERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 207 e~E-N~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.++ -..|+.+|..|+.++..+..
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~ 132 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEE 132 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 56666666666666654443
No 193
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=38.59 E-value=86 Score=21.27 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSL 230 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~l 230 (256)
++-++....-+|.+.-+.+|..|++.+..|...
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677778888888888888888877777653
No 194
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.22 E-value=72 Score=30.07 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.++.+.+.|+.+++.|+.++..|++|+..+++-+..
T Consensus 53 ~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~ 88 (428)
T 4b4t_K 53 KLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKR 88 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555667777777777777777777777766543
No 195
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=38.03 E-value=96 Score=22.15 Aligned_cols=40 Identities=30% Similarity=0.389 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHH
Q psy16107 204 KLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHREL 245 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev 245 (256)
.+|+.-...|..+..+|..|...-..+|-+ +||..+-.++
T Consensus 24 ~~lE~~~~~Lee~t~~L~~EK~ktd~LL~~--mLP~~VA~~L 63 (66)
T 3hls_A 24 QELEMLTDRLQLTLRALEDEKKKTDTLLYS--VLPPSVANEL 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHH
Confidence 445666778888888999999988899887 7887765544
No 196
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=37.90 E-value=27 Score=27.47 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16107 214 QKRIELLSEELNVLRSLF 231 (256)
Q Consensus 214 k~~Ie~L~kEl~~LK~ll 231 (256)
..+|+.|+.+|..|+.+|
T Consensus 22 ~~~~~~l~~~l~~~~~~l 39 (182)
T 3kqg_A 22 NTKIRALQGSLENMSKLL 39 (182)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444
No 197
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.52 E-value=66 Score=26.96 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
++..|+..-..-...|+.|+.++..||.+|..
T Consensus 116 r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~ 147 (154)
T 2ocy_A 116 LNKRLTEQLREKDTLLDTLTLQLKNLKKVMHS 147 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455566666666665544
No 198
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=36.93 E-value=1.1e+02 Score=22.96 Aligned_cols=56 Identities=30% Similarity=0.326 Sum_probs=29.2
Q ss_pred HHHHHHhhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 174 YKRRRERNNIA------VRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 174 Yr~RReRNNiA------aRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.|+-|++.+.+ -||.++-=+.=...++.-+.+|+.|-..|...|+.|+.....|..
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555543 234443333333344455556666666666666666665555543
No 199
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=36.88 E-value=92 Score=26.68 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
..+..|+++|+.|+.++...+.+...+.+.|
T Consensus 135 rtV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 135 DTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544444433
No 200
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=36.20 E-value=1.1e+02 Score=29.06 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
++..+...+.+...|+..+..++..|+.|+..+.
T Consensus 96 ~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~ 129 (409)
T 1m1j_C 96 YENTILAHENTIQQLTDMHIMNSNKITQLKQKIA 129 (409)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444555566656666666666655444
No 201
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=36.12 E-value=1.1e+02 Score=23.70 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..|...|.+.-++|..+|+.+.+++..-|.-|..
T Consensus 48 FAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~ 81 (93)
T 3sjb_C 48 YAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQA 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777777777766654
No 202
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=36.05 E-value=59 Score=29.72 Aligned_cols=28 Identities=32% Similarity=0.361 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
.|+++||.|...|..+|+.++.|++.+|
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4778888888888888888888887776
No 203
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=35.90 E-value=86 Score=23.32 Aligned_cols=28 Identities=14% Similarity=0.432 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
.+..+++.|++.-..|+.++..|+..+.
T Consensus 81 ~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 81 TLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666665443
No 204
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=35.36 E-value=81 Score=20.37 Aligned_cols=32 Identities=19% Similarity=0.458 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+...+++|-.....+|...+.|+..+|-++.|
T Consensus 3 kiaaikeeqaaieeeiqaikeeiaaikyliaq 34 (36)
T 1bb1_B 3 KIAAIKEEQAAIEEEIQAIKEEIAAIKYLIAQ 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677777888888888888888888776
No 205
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=35.28 E-value=93 Score=25.66 Aligned_cols=74 Identities=16% Similarity=0.242 Sum_probs=40.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhhhcCCC
Q psy16107 178 RERNNIAVRKSREKAKIRSRETEEK---VKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHFDSYPH 254 (256)
Q Consensus 178 ReRNNiAaRKSReKrK~R~~el~~k---v~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l~~~~~ 254 (256)
-+..|.|+.+=-+--+.-+.+++.+ ...|+.-....+..+.+.++.++..|..+.. -..+..++++|++.-|.
T Consensus 74 ~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~r----v~~vkkeL~~hi~sLPD 149 (152)
T 4fla_A 74 SKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLAR----VTQVRKELKSHIQSLPD 149 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcCCc
Confidence 3445666655443333333333322 2344444555555666666667777766665 35667778888877765
Q ss_pred C
Q psy16107 255 V 255 (256)
Q Consensus 255 ~ 255 (256)
+
T Consensus 150 l 150 (152)
T 4fla_A 150 L 150 (152)
T ss_dssp -
T ss_pred c
Confidence 4
No 206
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=35.04 E-value=77 Score=23.51 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
++...+..|..|++.|..++..+..++..++
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777776666666665544
No 207
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=34.99 E-value=1.1e+02 Score=21.02 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
|....+..|..|+++.++|..++..-+.....+.+-|.+
T Consensus 6 ~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 6 KNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344556677888888888888777766666666665544
No 208
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=34.84 E-value=1.7e+02 Score=23.18 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNV 226 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~ 226 (256)
...++.+|..+...|+..|+.|++|-+.
T Consensus 16 ~~~ei~~L~~ei~eLk~~ve~lEkERDF 43 (106)
T 4e61_A 16 SQETIGSLNEEIEQYKGTVSTLEIEREF 43 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888899999999999998553
No 209
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=34.62 E-value=8.3 Score=33.13 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16107 204 KLLVKENERLQKRIELLSEEL 224 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl 224 (256)
+++.++..+|++++++|++++
T Consensus 259 ~~~~~~~~~l~~~~~~l~~~l 279 (285)
T 3rvy_A 259 DNINNEIIKLREEIVELKELI 279 (285)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444443
No 210
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.60 E-value=90 Score=23.28 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
.++..++..|...-..|+.+|+.|++.+..|
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444433
No 211
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=34.39 E-value=1e+02 Score=24.05 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=0.9
Q ss_pred HHhhhHHHHHHH
Q psy16107 178 RERNNIAVRKSR 189 (256)
Q Consensus 178 ReRNNiAaRKSR 189 (256)
-.+|+.+++.+|
T Consensus 24 ~~~~~~~l~~~k 35 (129)
T 3tnu_B 24 AGRHGDDLRNTK 35 (129)
T ss_dssp ----------CH
T ss_pred HHhhHHHHHHHH
Confidence 345555555544
No 212
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=34.32 E-value=1.2e+02 Score=21.16 Aligned_cols=35 Identities=0% Similarity=0.096 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
+..++..+|..|......|...|..|+.++..-++
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~ 39 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKD 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777777665554
No 213
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=34.26 E-value=35 Score=21.05 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16107 200 EEKVKLLVKENERLQKRIELLS 221 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~ 221 (256)
.++-..|+.|...|.-+|..|+
T Consensus 6 kqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 6 KQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHHHHhc
Confidence 3344456666666666666654
No 214
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=34.18 E-value=2.2e+02 Score=24.20 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 192 AKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 192 rK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.-....+++.++..|+.....|.+++..|...+..=|.
T Consensus 46 ~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~ 83 (168)
T 3o0z_A 46 LESLNRELQERNRILENSKSQTDKDYYQLQAILEAERR 83 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666665555555555554443
No 215
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=34.09 E-value=86 Score=19.95 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 205 LLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
.||++...|..-|.+|++.++.|.+-+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666766666665543
No 216
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=33.99 E-value=54 Score=24.98 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 207 VKENERLQKRIELLSEELNVLRSL 230 (256)
Q Consensus 207 e~EN~~Lk~~Ie~L~kEl~~LK~l 230 (256)
+++...|+.+|..|+.++..|+..
T Consensus 3 ~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 3 EVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444444444455555444443
No 217
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=33.63 E-value=89 Score=31.10 Aligned_cols=40 Identities=13% Similarity=0.211 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 190 EKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 190 eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
+||++++-.....++..|.+++++|+++++..+-+.++++
T Consensus 303 e~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~e 342 (551)
T 2b5u_A 303 ENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQE 342 (551)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555666777777777777776666666655
No 218
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=33.21 E-value=78 Score=19.87 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 205 LLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
.|++.-..|..++..|++.++.|
T Consensus 5 alekkcaalesklqalekkleal 27 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555544443
No 219
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=33.06 E-value=1.5e+02 Score=25.07 Aligned_cols=38 Identities=8% Similarity=0.161 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
...+......|+++-..|...|..|+.+...+.++...
T Consensus 58 ~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~ 95 (174)
T 2p22_A 58 KNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSST 95 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666777777777777777777766666665543
No 220
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=32.96 E-value=63 Score=27.96 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 191 KAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 191 KrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
..+++...+..++..|+.++.+|.++++++-++...+.
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E 173 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALE 173 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666666666666655544443
No 221
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=32.90 E-value=71 Score=20.70 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 204 KLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
..|-.|.+.|+++-++|.+.++.|
T Consensus 10 ~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 10 QKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555555555555443
No 222
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=32.64 E-value=1.3e+02 Score=27.63 Aligned_cols=37 Identities=11% Similarity=0.005 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..++..+...+.+...|+..|+.++..|+.|+..+.+
T Consensus 15 ~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~ 51 (323)
T 1lwu_C 15 RILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVD 51 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356667777777888888888888888888876554
No 223
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=32.62 E-value=1.3e+02 Score=23.75 Aligned_cols=40 Identities=23% Similarity=0.160 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 193 KIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 193 K~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
|.+..++++.+.+|.+|+....+.++.++.....|+.-+.
T Consensus 36 KD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~ 75 (103)
T 4h22_A 36 KDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFA 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555556666666666666666665555444
No 224
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=32.60 E-value=1.3e+02 Score=29.23 Aligned_cols=31 Identities=10% Similarity=0.162 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNV 226 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~ 226 (256)
..++..++.+|..+...|..++.+++.++..
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888888888888877663
No 225
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=32.30 E-value=42 Score=25.97 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLS 221 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~ 221 (256)
..++.+...|+++...|+.+|+.|+
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666667777777766665
No 226
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=32.06 E-value=73 Score=22.03 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
+.-.=+.++..+-+.|..++..|+.++..|+.
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444567788888888888888888887765
No 227
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=31.57 E-value=1.8e+02 Score=22.54 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 211 ERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 211 ~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+|+.++..|..|++.++.-|..
T Consensus 52 aKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 52 TKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999987775
No 228
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=30.98 E-value=1.1e+02 Score=21.28 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Q psy16107 200 EEKVKLLVKENERLQKR-----IELLSEELNVLRS 229 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~-----Ie~L~kEl~~LK~ 229 (256)
...+..|++++..||.+ |.+|+++++.|+.
T Consensus 12 ld~l~~LEkqF~~LkEqlY~ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 12 VSEMLDLEKQFSELKEKLFRERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34567788888888765 5677777777654
No 229
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=30.95 E-value=1.7e+02 Score=22.13 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
|...++.+++.++..+..+..+|..|++.+..|.
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE 57 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444333
No 230
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=30.87 E-value=1.4e+02 Score=23.38 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 190 EKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 190 eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
.+--++....+.+++.|..++..|+.+++..+.-+..|
T Consensus 7 ~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~ 44 (125)
T 1joc_A 7 RALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQEL 44 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677788999999999999988765444433
No 231
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=30.85 E-value=96 Score=23.22 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 208 KENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 208 ~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
.-..+||+||..|+..+..+..-.
T Consensus 32 ssQ~KLKqRit~LE~~~~~~~~~~ 55 (74)
T 3swf_A 32 SMQQKLKQRLTKVEKFLKPLIDTE 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCc
Confidence 334456666666666665554433
No 232
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=30.83 E-value=1e+02 Score=22.92 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 203 VKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
+..|..|++.|..++..+..++.
T Consensus 6 v~~l~~E~eel~~klk~~~ee~~ 28 (71)
T 1uix_A 6 VANLANEKEELNNKLKEAQEQLS 28 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 233
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=30.72 E-value=76 Score=20.95 Aligned_cols=26 Identities=31% Similarity=0.263 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 204 KLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
++|-++.+.-..+|..|+.|...|++
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 45556666666667777777766654
No 234
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=30.45 E-value=73 Score=23.50 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16107 203 VKLLVKENERLQKRIELLSEEL 224 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl 224 (256)
++.|+.+.+.|..+|..|+.++
T Consensus 24 le~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444
No 235
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=30.29 E-value=74 Score=25.55 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16107 206 LVKENERLQKRIELLSEELN 225 (256)
Q Consensus 206 Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
+..+-..|..+++.|+++++
T Consensus 143 l~~~i~~L~~~l~~le~~~~ 162 (166)
T 3pjs_K 143 YTRTTRALHERFDRLERMLD 162 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555443
No 236
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.85 E-value=1.4e+02 Score=24.90 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 208 KENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 208 ~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.+...++.+++.|++++..-..+|.
T Consensus 108 ~~~~~~e~r~~~L~~ql~e~~~~l~ 132 (154)
T 2ocy_A 108 KEKYAIEILNKRLTEQLREKDTLLD 132 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556555555554444
No 237
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.84 E-value=1.5e+02 Score=23.12 Aligned_cols=8 Identities=38% Similarity=0.571 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy16107 212 RLQKRIEL 219 (256)
Q Consensus 212 ~Lk~~Ie~ 219 (256)
.+..+|+.
T Consensus 51 ~ie~ElEe 58 (97)
T 2eqb_B 51 KLNKEVED 58 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 238
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=29.81 E-value=2.9 Score=30.39 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 207 VKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 207 e~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
..|+.+|+++|..|+.|++.|+.
T Consensus 65 ~~ei~~L~~e~~~L~~e~~~Lkk 87 (97)
T 2jn6_A 65 AEQIRQLKKENALQRARTRHPAE 87 (97)
T ss_dssp HHHHHHHHHCGGGGGGTTSCCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666665554
No 239
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=29.71 E-value=1.3e+02 Score=28.13 Aligned_cols=41 Identities=15% Similarity=0.059 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 193 KIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 193 K~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+++..+++++.+++..++..|+.++.+.+.+...|-..+..
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~ 56 (412)
T 3u06_A 16 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMD 56 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666666666655555555555544
No 240
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=29.68 E-value=77 Score=20.52 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELL 220 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L 220 (256)
..+-..-+.|.+.|+.|+.+|++|
T Consensus 10 ~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 10 QKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334445567788888888888775
No 241
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=29.58 E-value=82 Score=26.39 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16107 205 LLVKENERLQKRIELL 220 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L 220 (256)
..+.-|..|+.++..|
T Consensus 194 ~ye~ln~~L~~eLp~l 209 (251)
T 2fic_A 194 VFEEMNVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555544
No 242
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=28.95 E-value=85 Score=20.28 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
.+.+++..|++..-.|--+|..|+..+..||
T Consensus 5 alkekvsalkeqflmlmfkvsalkekvsalk 35 (36)
T 3tq2_A 5 ALKEKVSALKEQFLMLMFKVSALKEKVSALK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666666666666666666666665553
No 243
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.94 E-value=26 Score=32.85 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16107 206 LVKENERLQKRIELLSEELN 225 (256)
Q Consensus 206 Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
|..+-..|+.+|..|+.++.
T Consensus 73 l~~~~~~~~~~~~~~~~~~~ 92 (425)
T 2dq3_A 73 IQNRVKELKEEIDRLEEELR 92 (425)
T ss_dssp STTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 244
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=28.74 E-value=88 Score=24.86 Aligned_cols=37 Identities=3% Similarity=0.122 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..+.++..+|+++...|+..+..|...+..++.++..
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555666666666666666666666666665554
No 245
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=28.66 E-value=1.5e+02 Score=23.47 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIE 218 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie 218 (256)
+..++..++..|..|++.+|.+..
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~ 27 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLE 27 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444
No 246
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=28.50 E-value=1.9e+02 Score=22.12 Aligned_cols=35 Identities=6% Similarity=0.107 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.+..|++.|+..-+.|...+..++..+..+...+.
T Consensus 92 ~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 92 SIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666655555443
No 247
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.33 E-value=74 Score=21.15 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 203 VKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
+++.+.+...|+.+++.|+.|.-
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEKH 32 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEKH 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666654
No 248
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=28.24 E-value=56 Score=22.10 Aligned_cols=20 Identities=15% Similarity=0.046 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16107 204 KLLVKENERLQKRIELLSEE 223 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kE 223 (256)
+.|+.....|+..|..|+..
T Consensus 47 ~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 47 QQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 249
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=28.21 E-value=1.7e+02 Score=21.18 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHhh
Q psy16107 209 ENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHF 249 (256)
Q Consensus 209 EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~~ev~~~l 249 (256)
..++|..++.+|++|+-.||-...--+.--.+..++|.+-+
T Consensus 17 s~eEL~~~L~elk~ELf~LR~q~atgql~n~~~ir~vRr~I 57 (72)
T 3v2d_2 17 SPVELEKLVREKKRELMELRFQASIGQLSQNHKIRDLKRQI 57 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 46788888888888888888776543332233444444443
No 250
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=28.09 E-value=22 Score=23.06 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEEL 224 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl 224 (256)
++.|+..|+.+++.+..++..|++++
T Consensus 9 vKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 9 VRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555443
No 251
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=27.87 E-value=1.5e+02 Score=27.53 Aligned_cols=35 Identities=14% Similarity=0.016 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
.++++++++++.++..|+.++...+.+...|-+.+
T Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~ 54 (403)
T 4etp_A 20 AALKEKIKDTELGMKELNEILIKEETVRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554444444444444333
No 252
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=27.83 E-value=1.9e+02 Score=21.67 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 193 KIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 193 K~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
..|...++.+++.++..+..+..+|..|++.+..|..
T Consensus 22 ~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~ 58 (101)
T 3u59_A 22 IDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTED 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444443
No 253
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=27.65 E-value=1.4e+02 Score=21.43 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 202 KVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 202 kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
....|+.....|..+|+.|+.-+..|..++..
T Consensus 40 ~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 40 SKGIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557777777888888888888888777765
No 254
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=27.48 E-value=1.8e+02 Score=21.17 Aligned_cols=24 Identities=38% Similarity=0.365 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 205 LLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
.|..|...|..+|..|+.|...||
T Consensus 38 ~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 38 SLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhhhhhc
Confidence 344444444445555555555444
No 255
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=27.24 E-value=47 Score=30.52 Aligned_cols=33 Identities=12% Similarity=0.283 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..+..|+...+.|+.+|..|+..+..++.++..
T Consensus 28 ~~I~~Lq~~le~L~~KI~~LE~~v~~q~~~~~~ 60 (323)
T 1lwu_B 28 GSLRSMKSVLEHLRAKMQRMEEAIKTQKELCSA 60 (323)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355668888888899999999988888877643
No 256
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=27.22 E-value=1.1e+02 Score=26.64 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 190 EKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLF 231 (256)
Q Consensus 190 eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll 231 (256)
+++-.-...+..+...|..+++....+|+.|+++++.|+.-.
T Consensus 16 ~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 16 DSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444445555666555566665555555666555555555544
No 257
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=27.02 E-value=1.6e+02 Score=23.51 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Q psy16107 200 EEKVKLLVKENERL----QKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 200 ~~kv~~Le~EN~~L----k~~Ie~L~kEl~~LK~ll~q 233 (256)
..++.+|++||... +..|.+.++.+..++.+|..
T Consensus 91 ~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ 128 (132)
T 1ykh_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIED 128 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666554 44455555555666666654
No 258
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=27.00 E-value=56 Score=23.03 Aligned_cols=13 Identities=0% Similarity=0.112 Sum_probs=7.8
Q ss_pred hhhHHHHHhhhcC
Q psy16107 240 HLHRELNKHFDSY 252 (256)
Q Consensus 240 ~~~~ev~~~l~~~ 252 (256)
....+|...|+.|
T Consensus 77 ~s~~~i~~~l~~~ 89 (89)
T 3coq_A 77 DSLQDIKALLTGL 89 (89)
T ss_dssp CCHHHHHHHHTCC
T ss_pred CCHHHHHHHHhcC
Confidence 3456666666654
No 259
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=26.90 E-value=16 Score=28.86 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=9.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHH
Q psy16107 177 RRERNNIAVRKSREKAKIRSRE 198 (256)
Q Consensus 177 RReRNNiAaRKSReKrK~R~~e 198 (256)
+|.--|++-||-|++=+.+..+
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~ 48 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKE 48 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHH
Confidence 4444455555555554444444
No 260
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=26.87 E-value=1.8e+02 Score=21.15 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 192 AKIRSRETEEKVKLLVKENERLQKRIE 218 (256)
Q Consensus 192 rK~R~~el~~kv~~Le~EN~~Lk~~Ie 218 (256)
.++.+.+...+...++.|.+.+++.|.
T Consensus 21 lrq~Ee~Rk~Kh~kME~ERE~mRQ~IR 47 (63)
T 3rk3_E 21 LRQAEEERKAKYAKMEAEREAVRQGIR 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455566666777777776664
No 261
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=26.39 E-value=1.3e+02 Score=23.05 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16107 206 LVKENERLQKRIELLSEE 223 (256)
Q Consensus 206 Le~EN~~Lk~~Ie~L~kE 223 (256)
+.++-..|..+++.|+++
T Consensus 116 l~~~~~~l~~~l~~le~~ 133 (139)
T 3eff_K 116 YTRTTRALHERFDRLERM 133 (139)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555544
No 262
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.36 E-value=1.1e+02 Score=24.09 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=0.0
Q ss_pred HhhhHHHHHHH
Q psy16107 179 ERNNIAVRKSR 189 (256)
Q Consensus 179 eRNNiAaRKSR 189 (256)
.+|+.+++.+|
T Consensus 27 ~~~~~~l~~~k 37 (131)
T 3tnu_A 27 ATNSELVQSGK 37 (131)
T ss_dssp -----------
T ss_pred HhhHHHHHHHH
Confidence 34455554444
No 263
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=26.27 E-value=78 Score=22.41 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 211 ERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 211 ~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+.|-.+|+.|++|...||.-|..
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHh
Confidence 34555666666666666655553
No 264
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=26.22 E-value=64 Score=24.68 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSE 222 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~k 222 (256)
.++.++..|+.+-..|.++|..++.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666654
No 265
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=26.22 E-value=1.6e+02 Score=25.17 Aligned_cols=29 Identities=28% Similarity=0.176 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNV 226 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~ 226 (256)
-.-.++..|..+|.+|+++.+.|..|...
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555543
No 266
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=26.15 E-value=1.6e+02 Score=24.19 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENER----LQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~----Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.++.+|++||.. |+..|.+.++.++.++.+|..
T Consensus 92 ~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ 128 (151)
T 1yke_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIED 128 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666554 555556666667777777776
No 267
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=26.13 E-value=2.4e+02 Score=22.13 Aligned_cols=45 Identities=24% Similarity=0.336 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy16107 186 RKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELN-VLRSL 230 (256)
Q Consensus 186 RKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~-~LK~l 230 (256)
+-||+-=-....+++.-+..|+.+|+.=..+|..|+..++ .||++
T Consensus 17 K~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l 62 (101)
T 1d7m_A 17 KVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNL 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3466554445556677777788888877777777777765 45543
No 268
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=25.92 E-value=50 Score=27.57 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIE 218 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie 218 (256)
..|..|++++++|..++.
T Consensus 98 Rsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 269
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=25.84 E-value=1.9e+02 Score=21.02 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16107 191 KAKIRSRETEEKVKLLVKEN------------ERLQKRIELLSEELNVLRSLFTNVG 235 (256)
Q Consensus 191 KrK~R~~el~~kv~~Le~EN------------~~Lk~~Ie~L~kEl~~LK~ll~q~~ 235 (256)
|--.+...+..++..|..|+ .+|+.++..|..|++.+..-+..-+
T Consensus 3 k~~~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~~ 59 (65)
T 3sja_C 3 ELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSEN 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
No 270
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.50 E-value=1.4e+02 Score=21.85 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 205 LLVKENERLQKRIELLSEELNVLRSL 230 (256)
Q Consensus 205 ~Le~EN~~Lk~~Ie~L~kEl~~LK~l 230 (256)
.|+...+.+..+|+.|++.+..++.-
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~ 94 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKK 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 271
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=25.25 E-value=2.8e+02 Score=22.70 Aligned_cols=44 Identities=25% Similarity=0.238 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 189 REKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 189 ReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
|+....-..+..+-+..|..=|.+|.++|+.-++-+..|+....
T Consensus 67 k~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~ 110 (152)
T 4fla_A 67 KEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQ 110 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556666677777777777777766666666665554
No 272
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=25.25 E-value=31 Score=29.08 Aligned_cols=35 Identities=11% Similarity=0.254 Sum_probs=28.7
Q ss_pred cccCCCccccchhhhccCccc------cchhhHHHHhhcCC
Q psy16107 42 LADLNTPEISLDLQNLIDDSQ------FNEGLFTEILNQGQ 76 (256)
Q Consensus 42 l~~l~~~E~SiDlsayId~~~------f~d~~ladlf~~~~ 76 (256)
+|-|.-+-.--.|.++|+|+. |+|++|+.|+.++-
T Consensus 50 ~~~l~~~~~~W~l~a~IsDGS~~LdV~f~~~VLt~lIGfS~ 90 (157)
T 3mxn_A 50 TGNLSSSGGIWSITAKVSDGTAYLDVDFVDEILTSLIGFSV 90 (157)
T ss_dssp CSCCBCGGGSCBCEEEEECSSCEEEEEECHHHHHHHHSCCH
T ss_pred ccceeecCCEEEEEEEEeCCceeEEEEeeHHHHHhhhCCCH
Confidence 366666667788999999984 99999999998884
No 273
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=25.20 E-value=2.1e+02 Score=23.33 Aligned_cols=43 Identities=12% Similarity=0.130 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 191 KAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 191 KrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+=++...++..++..|+.|.-.|..+|..-..||..|+.-+.+
T Consensus 62 ~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~D 104 (133)
T 1j1d_C 62 ELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFD 104 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHH
Confidence 3345566677888888889888888777766677666655544
No 274
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=24.92 E-value=2e+02 Score=21.82 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
+.+...+.|-.|...||-+|++|+.|-.....-|..
T Consensus 16 e~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKs 51 (81)
T 3qh9_A 16 EKQRKAEELLQELRHLKIKVEELENERNQYEWKLKA 51 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556677788888888888888876665555543
No 275
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=24.90 E-value=1.8e+02 Score=23.25 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 190 EKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 190 eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
.+......+++.++..|+..|..|+.++..+..+.+.|
T Consensus 46 ~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 46 GRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 276
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=24.65 E-value=2.5e+02 Score=21.91 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..++..+++..+..|..|.+.-..|+.++..|+.-+-
T Consensus 85 l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 85 VKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666544
No 277
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=24.34 E-value=1.1e+02 Score=24.26 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 197 ~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
..+...++.|++.-..++.+|..+...+..+-.
T Consensus 108 ~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 108 KEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666666665555544
No 278
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=24.31 E-value=57 Score=26.15 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 210 NERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 210 N~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
-++|-++|..|+-|...||..+.+
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356777888888888888888873
No 279
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.28 E-value=2.1e+02 Score=20.83 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
+.|+.+|-+-|..|-.++..|++++..|..
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 456778888899998888888888888764
No 280
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=24.01 E-value=1.4e+02 Score=24.39 Aligned_cols=32 Identities=13% Similarity=0.045 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRS 229 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ 229 (256)
.+++++..++.....++.+|..|+.++..|..
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46677777777777777777777777666653
No 281
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=23.72 E-value=61 Score=26.45 Aligned_cols=37 Identities=8% Similarity=0.196 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhh
Q psy16107 203 VKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLH 242 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lpe~~~ 242 (256)
+..++...+.|+..+.+++++++.|+.++.. +|...+
T Consensus 163 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~---~~~~~~ 199 (203)
T 3qks_A 163 LDKFETAYKKLSELKKTINNRIKEYRDILAR---TEGGHH 199 (203)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHT---TCSSCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCcc
Confidence 4567788889999999999999999999998 666544
No 282
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=23.31 E-value=89 Score=23.71 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEE 223 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kE 223 (256)
+.+++..|+.+...|+.++..|+.-
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566777778888888888877764
No 283
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=23.05 E-value=1e+02 Score=23.99 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16107 211 ERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 211 ~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.+|+.++..|..|++.++.-|.
T Consensus 59 AKL~Rk~DKl~~ele~l~~~L~ 80 (94)
T 3vlc_E 59 TKNNRKLDSLDKEINNLKDEIQ 80 (94)
T ss_dssp HHHHHHHHHHHHHTTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554443
No 284
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=22.91 E-value=41 Score=23.09 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16107 203 VKLLVKENERLQKRIELL 220 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L 220 (256)
+..|+.+.+.|+..|..|
T Consensus 51 ~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 51 NEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 285
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=22.79 E-value=1.9e+02 Score=20.35 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
......+...+..|+..+..|+..+..|
T Consensus 14 ~~~A~~~~~~~~~i~~~l~~L~~~~~~l 41 (98)
T 3gwk_C 14 RSSAQKYTAGSQQVTEVLNLLTQEQAVI 41 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444
No 286
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=22.66 E-value=39 Score=29.77 Aligned_cols=52 Identities=8% Similarity=0.058 Sum_probs=24.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 174 YKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 174 Yr~RReRNNiAaRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
||+-|.--..-.-+.++..+.+...++.+..+++.+.++|+.++.+.+.++.
T Consensus 135 FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~ 186 (250)
T 2ve7_C 135 FREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTI 186 (250)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 5554444444444455666677777777777788888888888887777754
No 287
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=22.64 E-value=18 Score=30.97 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 208 KENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 208 ~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
++.+++..++.+|+++++.|++.+.
T Consensus 256 ~~~~~~~~~~~~l~~~~~~l~~~l~ 280 (285)
T 3rvy_A 256 SHEDNINNEIIKLREEIVELKELIK 280 (285)
T ss_dssp -------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555566666666666666665544
No 288
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.62 E-value=2.1e+02 Score=20.71 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCchhhHHHHHhh
Q psy16107 209 ENERLQKRIELLSEELNVLRSLFTNVG-VLPEHLHRELNKHF 249 (256)
Q Consensus 209 EN~~Lk~~Ie~L~kEl~~LK~ll~q~~-~lpe~~~~ev~~~l 249 (256)
..++|..++.+|++|+-.||-...--+ .--.+..++|.+-+
T Consensus 10 s~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~I 51 (72)
T 3j21_W 10 SIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDI 51 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence 356788888888888888887666533 22333344444433
No 289
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=22.51 E-value=1.2e+02 Score=21.48 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-chhhHHHHHhhh
Q psy16107 209 ENERLQKRIELLSEELNVLRSLFTNVGVLP-EHLHRELNKHFD 250 (256)
Q Consensus 209 EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~lp-e~~~~ev~~~l~ 250 (256)
..++|..++.+|++|+-.||..... |-+. .+..+.|.+-++
T Consensus 10 s~~EL~~~l~elk~Elf~LR~q~at-gql~n~~~ir~vRr~IA 51 (63)
T 3r8s_Y 10 SVEELNTELLNLLREQFNLRMQAAS-GQLQQSHLLKQVRRDVA 51 (63)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHT-TCCSCGGGTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh-CCCcCcHHHHHHHHHHH
Confidence 4577888888888898888876654 4432 333444444443
No 290
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=22.45 E-value=1.6e+02 Score=25.89 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q psy16107 196 SRETEEKVKLLVKENERLQKRIELLSEE---LNVLRSL 230 (256)
Q Consensus 196 ~~el~~kv~~Le~EN~~Lk~~Ie~L~kE---l~~LK~l 230 (256)
..++..++..|.++...|+.++..|+.. +..|...
T Consensus 101 ~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~ 138 (357)
T 3rrk_A 101 LRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAAL 138 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Confidence 5566777777777777888888888777 6666543
No 291
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=22.36 E-value=2.5e+02 Score=22.47 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy16107 202 KVKLLVKENERLQK---RIELLSEELNVLRSLFT 232 (256)
Q Consensus 202 kv~~Le~EN~~Lk~---~Ie~L~kEl~~LK~ll~ 232 (256)
.+.+|+.+.+.+++ +|..|+.+++.++.=|.
T Consensus 46 ~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~ 79 (110)
T 2v4h_A 46 LIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ 79 (110)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444444444 55566666666655554
No 292
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.14 E-value=1.8e+02 Score=21.26 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 195 RSRETEEKVKLLVKENERLQKRIE 218 (256)
Q Consensus 195 R~~el~~kv~~Le~EN~~Lk~~Ie 218 (256)
+..+++..+.+-..|+..|+.++.
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444433
No 293
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.91 E-value=2.2e+02 Score=20.90 Aligned_cols=35 Identities=11% Similarity=-0.036 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+.-+++|-....+...+|..|++++..|.+-+..
T Consensus 26 qE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 26 QEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555666666665555554443
No 294
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=21.88 E-value=2e+02 Score=22.67 Aligned_cols=48 Identities=25% Similarity=0.009 Sum_probs=28.2
Q ss_pred HHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 174 YKRRRERNNIAVRKSR---EKAKIRSRETEEKVKLLVKENERLQKRIELLS 221 (256)
Q Consensus 174 Yr~RReRNNiAaRKSR---eKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~ 221 (256)
|+.+...-+.++..-. +.=..+...+.++.++|+++++.|+.++...+
T Consensus 9 ~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 9 VEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444221 23345666677777788888888887776653
No 295
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=21.81 E-value=79 Score=26.19 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 185 VRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSE 222 (256)
Q Consensus 185 aRKSReKrK~R~~el~~kv~~Le~EN~~Lk~~Ie~L~k 222 (256)
++++|.|||--...+ ..+-..|+.|.++|.+...
T Consensus 96 ~~~~R~KRK~lV~~I----Q~~L~~~D~l~~~i~~~~~ 129 (137)
T 1t7s_A 96 AKRNREKRKTLVNGI----QTLLNQNDALLRRLQEYQS 129 (137)
T ss_dssp CHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHH----HHHHHHhHHHHHHHHHHHH
Confidence 567888887655444 4577889999888876544
No 296
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=21.77 E-value=2.6e+02 Score=23.32 Aligned_cols=43 Identities=21% Similarity=0.170 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCC-CCchhhHHHH
Q psy16107 204 KLLVKENERLQKRIELLSEE--LNVLRSLFTNVGV-LPEHLHRELN 246 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kE--l~~LK~ll~q~~~-lpe~~~~ev~ 246 (256)
+.|+++|+.|-+--..|+++ ...||+||..-+. +|.....-|.
T Consensus 22 ~~lk~Q~~~lw~~rD~L~~~ls~~eLk~lL~~N~q~~~g~~~~ll~ 67 (160)
T 2riq_A 22 KALKAQNDLIWNIKDELKKVCSTNDLKELLIFNKQQVPSGESAILD 67 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTTCCCCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 34788888887777777764 4689999987665 5544444343
No 297
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=21.75 E-value=76 Score=23.99 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHH--HHHh
Q psy16107 203 VKLLVKENERLQKRIELLSEELN----VLRS--LFTN 233 (256)
Q Consensus 203 v~~Le~EN~~Lk~~Ie~L~kEl~----~LK~--ll~q 233 (256)
+..|..++..|+..|+.|++|-+ +||. +|.|
T Consensus 3 i~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ 39 (82)
T 3tq7_B 3 ILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELICQ 39 (82)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999965 5553 4555
No 298
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=21.68 E-value=2.9e+02 Score=23.70 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLR 228 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK 228 (256)
+..+..|...+..|+.+|..|+...+.|.
T Consensus 94 q~el~~l~~~~~~l~~~ireLEq~NDdlE 122 (189)
T 2v71_A 94 EDDLSQTRAIKEQLHKYVRELEQANDDLE 122 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33344444444444444444444444433
No 299
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=21.42 E-value=2e+02 Score=20.92 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16107 206 LVKENERLQKRIELLSEELN 225 (256)
Q Consensus 206 Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
|......|...|+.|+..+.
T Consensus 23 ~~~~~~~i~~~l~~L~~~v~ 42 (103)
T 4i0x_B 23 ARGFKEFVTENLDQLESRAQ 42 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 300
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=21.40 E-value=95 Score=28.26 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.+..++.++++.-+++-..|..|+.|+..+|.|+.
T Consensus 227 ~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (268)
T 2yo3_A 227 GVENKMKQIEDKIEEILSKIYHIENEIARIKKLIK 261 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34556666677777777777777777777777654
No 301
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=21.14 E-value=99 Score=22.14 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhcCC
Q psy16107 219 LLSEELNVLRSLFTNVGV 236 (256)
Q Consensus 219 ~L~kEl~~LK~ll~q~~~ 236 (256)
.|+..|..|..+|.+.++
T Consensus 52 ~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 52 FLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 334444444444444444
No 302
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=20.88 E-value=42 Score=20.69 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16107 206 LVKENERLQKRIELLSEEL 224 (256)
Q Consensus 206 Le~EN~~Lk~~Ie~L~kEl 224 (256)
|.....+|.++|..|+.|+
T Consensus 6 ldanvkrlekevgklegev 24 (28)
T 4dac_A 6 LDANVKRLEKEVGKLEGEV 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHhhhhhhh
Confidence 3333444444444444444
No 303
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=20.81 E-value=2.2e+02 Score=19.78 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVL 227 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~L 227 (256)
..+..+......|+..+..|...+..|
T Consensus 16 ~~A~~~~~~~~~i~~~l~~L~~~v~~L 42 (99)
T 3zbh_A 16 GVARQYNVESSNVTELIARLDQMSHTL 42 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433
No 304
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=20.74 E-value=5.1e+02 Score=24.99 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=18.5
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 200 EEK-VKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 200 ~~k-v~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
..+ +..|..+...|..++.+++.++.
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~ 135 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERD 135 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 77777777777777777777665
No 305
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=20.62 E-value=2.5e+02 Score=24.73 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSL 230 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~l 230 (256)
+++..+..+..+-..|..++.+|+.++..|+..
T Consensus 96 ~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 96 EAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344455566666666666666666666666555
No 306
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=20.52 E-value=94 Score=23.70 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNV 226 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~ 226 (256)
.+++++-+++..|+..|+.|++.+..
T Consensus 72 ~ki~~~~~~d~~l~~~i~~l~~~l~~ 97 (101)
T 3pvv_A 72 RKILSEMAERREVFDHVKELTTRIRQ 97 (101)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHh
Confidence 56677778888888888888877653
No 307
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=20.51 E-value=48 Score=30.54 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
+..+..|+.....|+.+|.+|+..+..|...+.
T Consensus 17 ~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~ 49 (319)
T 1fzc_C 17 DSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 49 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555666666666677777666666665443
No 308
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=20.45 E-value=2.3e+02 Score=19.81 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 200 EEKVKLLVKENERLQKRIELLSEELN 225 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie~L~kEl~ 225 (256)
..++++|+++.-+.+++|..|+.|.-
T Consensus 13 Rkk~eeler~lrk~kk~iKklEdeNP 38 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLEEDNP 38 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 44567788888888888888888743
No 309
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=20.32 E-value=2.4e+02 Score=20.00 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy16107 209 ENERLQKRIELLSEELNVLRSLFTNVGVL 237 (256)
Q Consensus 209 EN~~Lk~~Ie~L~kEl~~LK~ll~q~~~l 237 (256)
..++|..++.+|++|+-.||-...- |-+
T Consensus 10 s~~EL~~~l~elk~ELf~LR~q~at-gql 37 (66)
T 1r73_A 10 TDEELKNLLEEKKRQLMELRFQLAM-GQL 37 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc-cCc
Confidence 3466777777777777777754443 444
No 310
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=20.28 E-value=1.9e+02 Score=22.81 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 199 TEEKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 199 l~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
..+....|+...+.|.++|+.|++-++.|...+..
T Consensus 93 ~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~ 127 (148)
T 3gpv_A 93 ILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777777777776665
No 311
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=20.25 E-value=1.6e+02 Score=20.44 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Q psy16107 200 EEKVKLLVKENERLQKRIE--------------LLSEELNVLRSLFT 232 (256)
Q Consensus 200 ~~kv~~Le~EN~~Lk~~Ie--------------~L~kEl~~LK~ll~ 232 (256)
+..+..|+.+...++..++ .|..|+.++|.+|.
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 3444555555555555554 35566666666654
No 312
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.22 E-value=2.7e+02 Score=22.01 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 198 el~~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
.+..|++.|+..-..|...+..++..+..+...+.
T Consensus 102 ~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 102 FLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666665555444
No 313
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=20.19 E-value=1.2e+02 Score=22.51 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16107 204 KLLVKENERLQKRIELLSEELNVLRSLFT 232 (256)
Q Consensus 204 ~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~ 232 (256)
..|+...+.|..+|+.|+..++.|..++.
T Consensus 77 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 105 (108)
T 2vz4_A 77 AHLRRQHELLSARIGKLQKMAAAVEQAME 105 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666777777766666666554
No 314
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=20.02 E-value=14 Score=29.39 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16107 201 EKVKLLVKENERLQKRIELLSEELNVLRSLFTN 233 (256)
Q Consensus 201 ~kv~~Le~EN~~Lk~~Ie~L~kEl~~LK~ll~q 233 (256)
.+...|+.++..|..+++.|..|...|+.-+..
T Consensus 58 ~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~ 90 (107)
T 3a5t_A 58 TQKEELEKQKAELQQEVEKLASENASMKLELDA 90 (107)
T ss_dssp HHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999888865543
Done!