RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16107
(256 letters)
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA
complex, transcription factor, BZIP, C/EBP; 1.80A {Homo
sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A
1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Length = 78
Score = 81.1 bits (200), Expect = 3e-20
Identities = 47/74 (63%), Positives = 59/74 (79%)
Query: 161 RKNGKSVDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELL 220
K K+VDK++DEYK RRERNNIAVRKSR+KAK+R+ ET+ KV L ENERLQK++E L
Sbjct: 3 SKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQL 62
Query: 221 SEELNVLRSLFTNV 234
S EL+ LR+LF +
Sbjct: 63 SRELSTLRNLFKQL 76
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA
complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Length = 87
Score = 80.0 bits (197), Expect = 1e-19
Identities = 47/76 (61%), Positives = 59/76 (77%)
Query: 161 RKNGKSVDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELL 220
K K+VDK++DEYK RRERNNIAVRKSR+KAK+R+ ET+ KV L ENERLQK++E L
Sbjct: 3 SKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQL 62
Query: 221 SEELNVLRSLFTNVGV 236
S EL+ LR+LF +
Sbjct: 63 SRELSTLRNLFKQLPE 78
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA
complex, transcription/DNA complex; 3.00A {Homo sapiens}
SCOP: h.1.3.1
Length = 61
Score = 55.0 bits (133), Expect = 1e-10
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 175 KRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSL 230
++ ERN A +SR+K K+ + E+K + L N +LQ + LL E+ L+ L
Sbjct: 3 RKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding,
eukaryotic regulatory protein, transcription/DNA
complex; HET: DNA; 2.20A {Saccharomyces cerevisiae}
SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Length = 63
Score = 54.8 bits (132), Expect = 2e-10
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 167 VDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELN 225
V +++D +R RN A R+SR + R ++ E+KV+ L+ +N L+ + L + +
Sbjct: 3 VPESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription
regulation, nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 1fos_E* 1a02_F* 1s9k_D
Length = 63
Score = 53.2 bits (128), Expect = 5e-10
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 172 DEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSL 230
++ + RRERN +A K R + + + + + L E LQ I L +E L +
Sbjct: 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA
complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F
2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Length = 62
Score = 53.5 bits (129), Expect = 5e-10
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 175 KRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSL 230
+R+R RN IA KSR++ R EEKVK L +N L +L E++ L+
Sbjct: 3 ERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP:
h.1.3.1
Length = 63
Score = 50.8 bits (122), Expect = 4e-09
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 176 RRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNV 234
++ E+N A + R+K + + K L K+NE L++R + L++E+ L+ L V
Sbjct: 5 KKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEEV 63
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor,
acetylation, DNA-binding, isopeptide bond, nucleus;
2.80A {Mus musculus}
Length = 107
Score = 41.2 bits (96), Expect = 3e-05
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 168 DKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVL 227
+ + +RR +N R K + E E++ L +E E+L + EL+ L
Sbjct: 32 EIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDAL 91
Query: 228 RS 229
RS
Sbjct: 92 RS 93
>2wt7_B Transcription factor MAFB; transcription, transcription regulation,
nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 2wty_A* 1k1v_A
Length = 90
Score = 39.6 bits (92), Expect = 7e-05
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 175 KRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229
KRR +N + R K + E + L+++ E+L++ + L+ E + +
Sbjct: 29 KRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA
complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Length = 55
Score = 38.5 bits (90), Expect = 7e-05
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 175 KRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEEL 224
+ R +N A R+SR K K + E +V +L +N+ L + ++ L +
Sbjct: 3 EVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA
complex, transcription/DNA complex; HET: DNA; 2.00A
{Schizosaccharomyces pombe} SCOP: h.1.3.1
Length = 70
Score = 37.7 bits (87), Expect = 2e-04
Identities = 10/62 (16%), Positives = 27/62 (43%)
Query: 168 DKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVL 227
+ + + +R+ +N A R R++ + + E +V L + + + L +++ L
Sbjct: 3 NSDQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62
Query: 228 RS 229
Sbjct: 63 EE 64
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.002
Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 27/112 (24%)
Query: 153 HHSHHH-------HHRKNGKSVDKNTDEYKRRRERNNI-----AVRKSREKAKI-RSRET 199
HH HHH H + + D + + ++ ++ E I S++
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 200 EEKVKLLV-----KENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELN 246
L K+ E +QK +E VLR N L + E
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVE------EVLR---INYKFLMSPIKTEQR 103
Score = 29.8 bits (66), Expect = 1.1
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 209 ENERLQKRIELLSEELN--VLRSLFTNVGVLPEHLH 242
++L IE L R +F + V P H
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Score = 27.1 bits (59), Expect = 6.4
Identities = 40/283 (14%), Positives = 80/283 (28%), Gaps = 79/283 (27%)
Query: 8 DNTPQPNAASIQQEAMNVKKQQLTQHQHMKRYTD----LADLNTPEISLDLQNLIDDSQF 63
+ T + + +S + ++ + +L + K Y + L ++ + + F
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-------WNA--F 262
Query: 64 NEG---LFT----EILNQGQGKPRQQFPARSNTLAYMPQPVHFESSS--SNSTGGPNIKE 114
N L T ++ + +++ P E S ++
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD----EVKSLLLKYLDCR-PQD 317
Query: 115 EPVESEFRHQTTPYNV------ISNGAPTNFNTPLAHSSKSSNQHHSHHHHHRKNGKSVD 168
P E T P + I +G T N +H + S++
Sbjct: 318 LPREV---LTTNPRRLSIIAESIRDGLATWDNW----------KHVNCDKLTTIIESSLN 364
Query: 169 K-NTDEYKRRRERNNIAVRKSREKAKI------------RSRETEEKVK------LLVKE 209
EY++ + ++V A I + V L+ K+
Sbjct: 365 VLEPAEYRKMFD--RLSV--FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 210 NERLQKRIELLSEELNVLRSLFTNVGVLPEHLHRELNKHFDSY 252
+ I + EL V LHR + D Y
Sbjct: 421 PKESTISIPSIYLELKVKLENEYA-------LHRSI---VDHY 453
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase;
transcription hydrolase complex, nucleotide-binding;
2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Length = 109
Score = 32.9 bits (75), Expect = 0.024
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHL 241
++K L + E L + L E+ LRS VGV+ + L
Sbjct: 3 HHHHHRMKQLEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDIL 47
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 34.6 bits (79), Expect = 0.028
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 146 SSKSSNQHHSHHHHHRKNGKSVDK-NTDEYKRRRERNNIAVRKSREKAKIRSR 197
+ S+ + R N K+ + + DE +RRR+ + +RK++ + R
Sbjct: 3 NGTDSSTSKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKR 55
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 0.12
Identities = 10/56 (17%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 175 KRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKE-----NERLQKRIE--LLSEE 223
++ RE +++ +K+ +E EK K ++E +E+++K ++++
Sbjct: 88 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
Score = 31.7 bits (71), Expect = 0.14
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 12/45 (26%)
Query: 168 DKNTDE-YKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENE 211
K+ +E +R+ E+ EK KI +R ++ ++ +
Sbjct: 117 KKDLEEWNQRQSEQ--------VEKNKINNRIADKA---FYQQPD 150
Score = 28.6 bits (63), Expect = 1.8
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 161 RKNGKSVDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENER--LQKR 216
+ K + + K + +K E+ R E EK K+ + ++ Q+
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQP 149
Score = 27.0 bits (59), Expect = 4.8
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 186 RKSREKAKIRS-RETEEKVKLLVKENERLQKRIELLSE 222
R ++E IR RE E++ +L + E +
Sbjct: 79 RLTQEPESIRKWRE-EQRKRLQELDAASKVMEQEWREK 115
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.15
Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 33/124 (26%)
Query: 47 TPEISLDLQNLIDDSQFNEGLFTEILNQGQGKPRQQ---FPARSNTLAYMPQPVHFESSS 103
P SL L D + NEG+ + +L+ ++Q + ++N +++P E S
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSI-SNLTQEQVQDYVNKTN--SHLPAGKQVEISL 370
Query: 104 SNS------TGGP--------NIKEEPVESEFRHQT-TPYN----VISN-----GAPTNF 139
N +G P +++ S Q+ P++ SN +P F
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD-QSRIPFSERKLKFSNRFLPVASP--F 427
Query: 140 NTPL 143
++ L
Sbjct: 428 HSHL 431
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 31.1 bits (71), Expect = 0.18
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 173 EYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229
E ER +R++ ++ + + V+ +E + +K IE L + L +
Sbjct: 7 EAVEEMER---LLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWA 60
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli}
SCOP: a.174.1.1
Length = 148
Score = 30.6 bits (70), Expect = 0.22
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 219 LLSEELNVLRSLFTNVGVLPEHLHRELNKHFDSYPHVQ 256
LL++E + L T+ G+ L ++N+ + P V+
Sbjct: 38 LLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVE 75
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel
inter domain, chaperone; 3.94A {Mycobacterium
tuberculosis} PDB: 3m9d_A
Length = 251
Score = 30.9 bits (69), Expect = 0.29
Identities = 9/53 (16%), Positives = 22/53 (41%)
Query: 177 RRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229
R + N + ++ + E ++ L N +L + ++ ++L LR
Sbjct: 37 REQLENAVGSHAPTRSARDIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 89
>1zme_C Proline utilization transcription activator; complex (transcription
regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET:
DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1
h.1.3.1 PDB: 1ajy_A
Length = 70
Score = 28.5 bits (64), Expect = 0.44
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 198 ETEEKVKLLVKENERLQKRIELLSEELNVLRSLFT 232
E +K+ + K ++LQK + +EE N L++L
Sbjct: 34 EPSKKIVVSTKYLQQLQKDLNDKTEENNRLKALLL 68
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 30.2 bits (68), Expect = 0.71
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 186 RKSREKAKIRSRETEEK--VKLLVKENERLQKRIELLSEELNVLRSLFTNVGVLPEHLHR 243
+K E +R +E +K+ L+ I L E+L ++ L
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSE 1151
Query: 244 ELNK 247
EL
Sbjct: 1152 ELEA 1155
Score = 27.1 bits (60), Expect = 7.1
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 187 KSREKAKIRSRETEEKVKLLVKE-------NERLQKRIELLSEELNVLRSLFTNVGVLPE 239
+R+K ++ + K+K + + N +L K +LL E ++ L + +
Sbjct: 969 AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028
Query: 240 HLHRELNKH 248
+L + NKH
Sbjct: 1029 NLTKLKNKH 1037
Score = 27.1 bits (60), Expect = 7.2
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 147 SKSSNQHHSHHHHHRKNGKSVDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLL 206
++ Q K + + + + N A++K RE + +E ++
Sbjct: 1077 AELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELES-HISDLQEDLESE 1135
Query: 207 VKENERLQKRIELLSEELNVLRS 229
+ +K+ LSEEL L++
Sbjct: 1136 KAARNKAEKQKRDLSEELEALKT 1158
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 30.2 bits (69), Expect = 0.82
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 219 LLSEELNVLRSLFTNVGVLPEHLHRELNKHFDSYPHVQ 256
LL +E ++ L G P+ L + P V+
Sbjct: 38 LLKDERSLAWRLLEKAGADPKALKELQERELARLPKVE 75
>2bzv_A Fiber protein 2; receptor, viral protein; 1.15A {Human adenovirus
type 41} PDB: 2bzu_A
Length = 181
Score = 29.2 bits (65), Expect = 0.96
Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 7/76 (9%)
Query: 88 NTLAYMPQPVHFESSSSNSTGGPNIKEEPVESEFRHQTTPYNVI---SNGAPTNFNTPLA 144
N+ Y P+ + PNI + + Y S F+ P A
Sbjct: 110 NSTVY-PRNKTAHPGNMLIQISPNI---TFSVVYNEINSGYAFTFKWSAEPGKPFHPPTA 165
Query: 145 HSSKSSNQHHSHHHHH 160
+ Q HHHHH
Sbjct: 166 VFCYITEQGSHHHHHH 181
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase;
KDTA, GSEA, glycosyltransferase superfamily B,; HET:
PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Length = 374
Score = 29.5 bits (67), Expect = 1.2
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 153 HHSHHHHHRKNGKSVDKNTDEYKRRRERNNIAVRKSREKAKI 194
HH HHHHH + + + +R K +
Sbjct: 3 HHHHHHHHHHSSGHI-EGRHMQFEVLKRFFPKESLKNCKGAL 43
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 27.7 bits (62), Expect = 1.4
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 197 RETEEKVKLLVKENERLQKRIELLSEELNVLR 228
+ + + L+ E + L+KR E L +L L
Sbjct: 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding,
nucleotide-binding, membrane, transmembrane, transport
protein; 3.00A {Methanosarcina acetivorans} SCOP:
f.58.1.1
Length = 295
Score = 28.5 bits (64), Expect = 1.7
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 152 QHHSHHHHHRKNGKSVDKNTDEYKRRRERNNI 183
HH HHHHH +G+++ + R+
Sbjct: 3 HHHHHHHHHHSSGENLYFQGHMKAKNRKTRKF 34
>1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.50A {Homo sapiens}
Length = 44
Score = 26.2 bits (58), Expect = 1.8
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 160 HRKNGKSVDKNTDEYKRRRERNNIAVRKSR 189
K+ K++ E +RRR N+ +RK++
Sbjct: 3 RLHRFKNKGKDSTEMRRRRIEVNVELRKAK 32
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 28.6 bits (64), Expect = 2.0
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 206 LVKENERLQKRIELLSEELNVLRSL 230
EN+ L++R+E L++ + + L
Sbjct: 24 TYTENQHLKERLEELAQLESEVADL 48
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 28.6 bits (65), Expect = 2.1
Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 166 SVDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELN 225
V+K+ + ++ R KAK + EKV + E ++ ++ + + E+
Sbjct: 158 FVEKHLEGLRKITSRGA---NTLEMKAKKEEQAIIEKVYQYLTETKQPIRKGDWSNREVE 214
Query: 226 VLRSLF 231
++ SL+
Sbjct: 215 IINSLY 220
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid;
transport protein, solute-binding protein; 2.26A
{Neisseria gonorrhoeae}
Length = 291
Score = 28.1 bits (63), Expect = 2.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 152 QHHSHHHHHRKNGKSVDKN 170
HH HHHHH +G D +
Sbjct: 3 HHHHHHHHHHSSGHIDDDD 21
>3k3q_A Llama AA1 VHH domain; llama, VHH, antibody, BONT, cell junction,
cell membrane, cytoplasm, disulfide bond, hydrolase;
2.60A {Lama glama}
Length = 151
Score = 27.2 bits (61), Expect = 3.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 146 SSKSSNQHHSHHH 158
SS ++ +HH HHH
Sbjct: 139 SSAAALEHHHHHH 151
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc
complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Length = 800
Score = 28.3 bits (62), Expect = 3.2
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 150 SNQHHSHHHHHRKNGKSVDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKE 209
++ HH HHHHH G + + ++ N A K + + E ++K V
Sbjct: 2 AHHHHHHHHHHAGAGARNMASMNRLEKFFTTLNTAQSKVLKGY--TTDELVSQIKEYVDF 59
Query: 210 NERLQKRIELLSEELN 225
+ K+ L
Sbjct: 60 TPYILKQTYRLLCGQA 75
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario
centre for structu proteomics, OCSP, unknown function;
NMR {Archaeoglobus fulgidus}
Length = 153
Score = 27.4 bits (60), Expect = 3.3
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 155 SHHHHHRKNGKSVDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQ 214
SHHHHH +G+ R + +IR E +V+L +
Sbjct: 4 SHHHHHHSSGRENLYFQGHMGERGVEMRL---------RIRFESAECEVELYEEWAPETV 54
Query: 215 KRI 217
+ I
Sbjct: 55 RAI 57
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 28.0 bits (62), Expect = 3.4
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 155 SHHHHHRKNGKSVDKNTDEYKRRRERNNIAVRKSREKAKIRSRE--TEEKVKLLVKENER 212
SHHHHH +G + +R E +A K EKA I +++ +K+ +
Sbjct: 3 SHHHHHHSSGLVPRGS--HMFKREEIIEMA-NKDFEKAWIETKDLIKAKKINESYPRIKP 59
Query: 213 LQKRIELLSEELNVLRSLFTNVG 235
+ + +++ + LR + +G
Sbjct: 60 VFGKTHPVNDTIENLRQAYLRMG 82
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0*
2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0*
2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Length = 56
Score = 25.6 bits (57), Expect = 3.5
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 147 SKS-SNQHHSHHHHHRKNGKSVDKNTDEYKRR 177
++S SH SVDK + E R
Sbjct: 8 TRSKRGMRRSHDALTAVTSLSVDKTSGEKHLR 39
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 27.6 bits (62), Expect = 3.7
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Query: 34 QHMKRYTDLADL--NTPEISLDLQNLI-DDSQFNEGLFTEIL 72
+HM RY L NTP + LQ L +G +
Sbjct: 1 RHMTRYDSLLQALGNTP--LVGLQRLSPRWDDGRDGPHVRLW 40
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 27.5 bits (61), Expect = 3.7
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 152 QHHSHHHHHR---KNGKSVDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVK 208
+HH HHHHH G K + +R + + E + + E L+
Sbjct: 2 KHHHHHHHHGGLVPRGSHGASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLS 61
Query: 209 ENER 212
++
Sbjct: 62 RRKK 65
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional
3-deoxy-7-phosphoheptulonate synthase/chorismat listeria
monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB:
3tfc_A*
Length = 385
Score = 27.8 bits (62), Expect = 3.8
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 156 HHHHHRKNGKSVDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQK 215
HHHHH +G + ++ N + E+ + + + + L+ + L +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSNAMVNT-----NLEELRTQVDQLNIDLLELISKRANLVQ 56
Query: 216 RIELLSEELNVLR 228
I + LR
Sbjct: 57 EIGKIKGTQGSLR 69
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein,
epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4}
SCOP: h.1.3.1 PDB: 2c9n_Y
Length = 63
Score = 25.5 bits (55), Expect = 4.0
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 175 KRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNV 226
+ +R +N +A RKSR K K + E EN+RL+ ++ + L+V
Sbjct: 3 EIKRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLLLKQMCPSLDV 54
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP;
2.9A {Pyrococcus abyssi GE5}
Length = 389
Score = 27.6 bits (61), Expect = 4.1
Identities = 13/72 (18%), Positives = 25/72 (34%)
Query: 157 HHHHRKNGKSVDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKR 216
HHHH + V E + + K I E + + K++ +R
Sbjct: 2 HHHHHHMKEVVSSVYKEILVKLGLTEDRIETLEMKGGIIEDEFDGIRYVRFKDSAGKLRR 61
Query: 217 IELLSEELNVLR 228
++ +E V+
Sbjct: 62 GTVVIDEEYVIP 73
>3tpk_A Immunoglobulin heavy chain antibody variable DOMA; immunoglobulin
heavy chain domains, VHH, complementarity DET regions,
CDR, oligomer-specific; 1.30A {Camelidae} PDB: 3ln9_A*
1zv5_A
Length = 136
Score = 26.7 bits (60), Expect = 4.3
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 146 SSKSSNQHHSHHH 158
SS S HH HHH
Sbjct: 124 SSASGADHHHHHH 136
>3t41_A Epidermin leader peptide processing serine protea; structural
genomics, center for structural genomics of infec
diseases, csgid; 1.95A {Staphylococcus aureus} PDB:
3qfh_A
Length = 471
Score = 27.5 bits (61), Expect = 4.4
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 156 HHHHHRKNGKSVDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQK 215
HHHHH +G VD T+ + + + E + K K
Sbjct: 2 HHHHHHSSG--VDLGTENLYFQSNAMGSSHHHYHHENLYFQGSEELYYSVEYKNTATFNK 59
Query: 216 RIELLSEEL 224
++ S +
Sbjct: 60 LVKKKSLNV 68
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics,
parasitology, structural genomics consortium, SGC,
ATP-binding, nucleotide-binding; HET: ANP; 2.55A
{Toxoplasma gondii}
Length = 285
Score = 27.2 bits (61), Expect = 5.6
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 152 QHHSHHHHHRKNGKSVDKNTDEYKRRRE--RNNIA-VRKSREKAKIRSRETEEKVKLLVK 208
HH HH R+N D + +R+ V E++ R +K + K
Sbjct: 2 HHHHHHSSGRENLYFQGTIDDLFIFKRKLGSGAFGDVHLVEERSSGLER----VIKTINK 57
Query: 209 ENERLQKRIELLSEELNVLRSL 230
+R Q +E + E+ VL+SL
Sbjct: 58 --DRSQVPMEQIEAEIEVLKSL 77
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 26.1 bits (58), Expect = 5.7
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 180 RNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLSEELNVLRS 229
+N ++V + + + +EK ++N+ L+ I+ L ELN R+
Sbjct: 73 KNTVSVNLELTAEEWKKKYEKEK-----EKNKALKSVIQHLEVELNRWRN 117
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 26.8 bits (60), Expect = 6.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 210 NERLQKRIELLSEELNVLRSLF 231
ER +K +E L E+LN +
Sbjct: 67 KERSRKELEKLLEQLNQPEAHL 88
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 26.8 bits (60), Expect = 6.6
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 210 NERLQKRIELLSEELN 225
N++L+ R+E + +L
Sbjct: 44 NDKLKGRVEEFAAQLG 59
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix,
TETR fold, structural genomics, PSI, prote structure
initiative; HET: MSE; 1.52A {Rhodococcus SP}
Length = 214
Score = 26.8 bits (59), Expect = 6.7
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 149 SSNQHHSHHHHHRKNGKSVDKNTDEYKRRRER 180
S+ HH HH R+N T +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGHVTSDPGTAAPV 33
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 26.8 bits (60), Expect = 7.1
Identities = 3/16 (18%), Positives = 9/16 (56%)
Query: 210 NERLQKRIELLSEELN 225
+L+KR+ +++
Sbjct: 56 TPKLEKRVREIAKGFG 71
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 27.1 bits (61), Expect = 7.1
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 176 RRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENERLQKRIELLS-EELNVLRSLF 231
++ + +K + KVK V + ++ + + +E+ VL
Sbjct: 162 PIIDKLEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHL 218
>4f9d_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; family 4
carbohydrate esterase, TIM barrel, hydrolase, deace
carbohydrate/sugar binding; HET: MES; 1.90A {Escherichia
coli} PDB: 4f9j_A*
Length = 618
Score = 26.9 bits (59), Expect = 7.1
Identities = 8/70 (11%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Query: 152 QHHSHHHHHRKNGKSVDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENE 211
H+ + H+ + Y R + A ++ + + R R K+ ++
Sbjct: 145 ASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTK- 203
Query: 212 RLQKRIELLS 221
++ +
Sbjct: 204 -VEVNPHVFV 212
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 27.1 bits (61), Expect = 7.2
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 154 HSHHHHHRKNGKSVDKNTDEYKRRRERNNIAVRKSRE 190
H HHHHH + + R + + V+ +RE
Sbjct: 3 HHHHHHHHHHSSG------HIEGRHMADRLIVKGARE 33
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 26.8 bits (60), Expect = 7.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 210 NERLQKRIELLSEELN 225
ERL+ E L+E L
Sbjct: 43 AERLRPEAEKLAEALG 58
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 26.8 bits (60), Expect = 7.4
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 210 NERLQKRIELLSEELN 225
NE L+KR+ +++ELN
Sbjct: 41 NESLEKRVRPIAQELN 56
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural
genomics, PSI-2, protein structure initiative; NMR
{Vibrio parahaemolyticus} SCOP: a.284.1.1
Length = 83
Score = 25.2 bits (55), Expect = 7.5
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 138 NFNTPLAHSSKSSNQHHSHHHHH 160
F L S ++ H HHHHH
Sbjct: 60 KFAQALMSSLETPKTHLEHHHHH 82
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A {Burkholderia
pseudomallei 1710B}
Length = 271
Score = 26.8 bits (60), Expect = 7.6
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 210 NERLQKRIELLSEELN 225
+R + RI + E
Sbjct: 49 GDRFKDRITEFAAEFG 64
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 26.8 bits (60), Expect = 7.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 210 NERLQKRIELLSEELN 225
+ L+KR+E L+EEL
Sbjct: 66 GDALKKRVEPLAEELG 81
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 26.8 bits (60), Expect = 7.8
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 210 NERLQKRIELLSEELN 225
+E +KR++ L+E L
Sbjct: 65 SETFKKRVDPLAESLG 80
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 26.4 bits (59), Expect = 8.9
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 152 QHHSHHHHHRKNGKSVDKNTDEYKRRRERNNIAVRKSREK 191
HH HHHHH +G + + + E N+ +E
Sbjct: 3 HHHHHHHHHHSSG-----HIEGRHMKLEFMNLLSENKKEN 37
>1p7h_L Nuclear factor of activated T-cells, cytoplasmic 2; DNA binding
protein, transcription regulation, activator,
transcription/DNA complex; 2.60A {Homo sapiens} SCOP:
b.1.18.1 b.2.5.3 PDB: 2o93_L 1a02_N* 1pzu_B 1owr_M
2as5_N 1s9k_C 3qrf_N 1nfa_A 1a66_A*
Length = 286
Score = 26.7 bits (58), Expect = 9.3
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 152 QHHSHHHHHRKNGKSVDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENE 211
+ H+ + HR GK+V + E + N V + + K R T + +L N
Sbjct: 77 KPHAFYQVHRITGKTVTTTSYE----KIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNA 132
Query: 212 RLQKRIELLSEE--LNVLRSLF 231
++ R +R +F
Sbjct: 133 DIELRKGETDIGRKNTRVRLVF 154
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Length = 83
Score = 25.0 bits (55), Expect = 9.5
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 197 RETEEKVKLLVKENERLQKRIELLSEELNVLR 228
+ K ++ + L+++ LL +++ L
Sbjct: 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid;
transport protein, solute-BIND protein; HET: CYS GOL;
1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Length = 283
Score = 26.6 bits (59), Expect = 9.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 152 QHHSHHHHHRKNGKSVDKNT 171
HH HHHHH +G D +
Sbjct: 3 HHHHHHHHHHSSGHIDDDDK 22
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase;
2.95A {Clostridium perfringens}
Length = 560
Score = 26.6 bits (58), Expect = 10.0
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 152 QHHSHHHHHRKNGKSVDKNTD 172
HH HHHHH +G D +
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKH 23
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.126 0.354
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,776,698
Number of extensions: 223598
Number of successful extensions: 2315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2238
Number of HSP's successfully gapped: 167
Length of query: 256
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 165
Effective length of database: 4,160,982
Effective search space: 686562030
Effective search space used: 686562030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.3 bits)