RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16107
         (256 letters)



>d1vsra_ c.52.1.15 (A:) Very short patch repair (VSR) endonuclease
           {Escherichia coli [TaxId: 562]}
          Length = 134

 Score = 31.0 bits (70), Expect = 0.053
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 155 SHHHHHRKNGKSVDKNTDEYKRRRERNNIAVRKSREKAK------IRSRETEEKVKLLVK 208
             HHHH    K     T+ +  +  +N    R+   + +      +   E      L  +
Sbjct: 45  FWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDISRLQELGWRVLIVWECA----LRGR 100

Query: 209 ENERLQKRIELLSEEL 224
           E    +   E L E +
Sbjct: 101 EKLTDEALTERLEEWI 116


>d1qwza_ b.100.1.1 (A:) Sortase B {Staphylococcus aureus [TaxId:
           1280]}
          Length = 235

 Score = 30.3 bits (68), Expect = 0.15
 Identities = 14/59 (23%), Positives = 23/59 (38%)

Query: 153 HHSHHHHHRKNGKSVDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVKLLVKENE 211
           HH HHHHH  +   +  +  E K+ R       +K +            + + L K N+
Sbjct: 2   HHHHHHHHHHSSGHISGDAMEDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINK 60


>d2djfa1 b.61.5.1 (A:1-118) Dipeptidyl peptidase I (cathepsin C),
          exclusion domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 118

 Score = 28.6 bits (64), Expect = 0.29
 Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 3/50 (6%)

Query: 29 QLTQHQHMKRYT---DLADLNTPEISLDLQNLIDDSQFNEGLFTEILNQG 75
          Q+      +               + L   +   D   N G FT I NQG
Sbjct: 18 QVGSSGSQRDVNCSVMGPQEKKVVVYLQKLDTAYDDLGNSGHFTIIYNQG 67


>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 503

 Score = 29.7 bits (65), Expect = 0.37
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 159 HHRKNGKSVDK-NTDEYKRRRERNNIAVRKSREKAKIRSR 197
           + R N K+  + + DE +RRR+   + +RK++    +  R
Sbjct: 5   YRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKR 44


>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 88

 Score = 26.8 bits (59), Expect = 0.94
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 197 RETEEKVKLLVKENERLQKRIELLSEELNVLRS 229
              + + + L+ E + L+KR E L  +L  L  
Sbjct: 55  LSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87


>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 88

 Score = 25.8 bits (56), Expect = 2.1
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 9/72 (12%)

Query: 154 HSHHHHHRKNGKS---------VDKNTDEYKRRRERNNIAVRKSREKAKIRSRETEEKVK 204
           H HHHH    G                 E +R++    + ++   +K         E  K
Sbjct: 2   HHHHHHLVPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFK 61

Query: 205 LLVKENERLQKR 216
            L  E  RL+K+
Sbjct: 62  HLQNEINRLEKQ 73


>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD,
           receiver domain {Sinorhizobium meliloti [TaxId: 382]}
          Length = 140

 Score = 26.2 bits (57), Expect = 2.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 206 LVKENERLQKRIELLSEEL 224
           LV EN  L++  E  SE L
Sbjct: 121 LVMENRSLRRAAEAASEGL 139


>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15 {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 86

 Score = 24.4 bits (53), Expect = 7.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 156 HHHHHRKNGKSVDKNTDEYKRRRERNNIAVRKSREKAK 193
           HHHHH + G +  K+     +  E+   A + S+ +A 
Sbjct: 3   HHHHHLEGGGNAQKSAMARAKNLEKAKAAGKGSQLEAN 40


>d2qam01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia coli
           [TaxId: 562]}
          Length = 56

 Score = 23.4 bits (51), Expect = 8.5
 Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 147 SKS-SNQHHSHHHHHRKNGKSVDKNTDEYKRR 177
           ++S      SH         SVDK + E   R
Sbjct: 8   TRSKRGMRRSHDALTAVTSLSVDKTSGEKHLR 39


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.126    0.354 

Gapped
Lambda     K      H
   0.267   0.0471    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 889,465
Number of extensions: 39216
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 33
Length of query: 256
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,268,006
Effective search space: 219365038
Effective search space used: 219365038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.4 bits)