BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16108
(94 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BSK|A Chain A, Crystal Structure Of The Tim9 Tim10 Hexameric Complex
pdb|2BSK|C Chain C, Crystal Structure Of The Tim9 Tim10 Hexameric Complex
pdb|2BSK|E Chain E, Crystal Structure Of The Tim9 Tim10 Hexameric Complex
Length = 89
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 54/74 (72%)
Query: 17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
QI FKEFL YNK+TE CF DCV F +RE+ +E +C+ +CL+KY+KMT RISMR QE
Sbjct: 10 QIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQE 69
Query: 77 FQMLQNEQMLAASG 90
+ + QNE + A +G
Sbjct: 70 YHIQQNEALAAKAG 83
>pdb|3DXR|A Chain A, Crystal Structure Of The Yeast Inter-Membrane Space
Chaperone Assembly Tim9.10
Length = 89
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 3 DQLNEAQQNEMMKT-QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLE 61
D LN +Q E K + K+F+ Y+ + E CF DCVN F + ++T KE++C + C E
Sbjct: 4 DALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSE 63
Query: 62 KYMKMTSRISMRMQE 76
K++K + R+ R QE
Sbjct: 64 KFLKHSERVGQRFQE 78
>pdb|2BSK|B Chain B, Crystal Structure Of The Tim9 Tim10 Hexameric Complex
pdb|2BSK|D Chain D, Crystal Structure Of The Tim9 Tim10 Hexameric Complex
pdb|2BSK|F Chain F, Crystal Structure Of The Tim9 Tim10 Hexameric Complex
Length = 90
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 28 YNKITEICFKDCV-NHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQMLQNEQM 85
YN+ T C + CV H+ E++K E C C+ KY+ + R ++ E Q+E++
Sbjct: 22 YNRXTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERXGKKLTELSX-QDEEL 79
>pdb|3DXR|B Chain B, Crystal Structure Of The Yeast Inter-Membrane Space
Chaperone Assembly Tim9.10
Length = 95
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 28 YNKITEICFKDCVNHFISR-EITKKEESCAVNCLEKYMKMTSRISMRMQE 76
+NK+ C+K C+N S E+ K E SC C+ KY + ++ MQ+
Sbjct: 35 FNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQK 84
>pdb|3CJH|B Chain B, Tim8-Tim13 Complex
pdb|3CJH|D Chain D, Tim8-Tim13 Complex
pdb|3CJH|F Chain F, Tim8-Tim13 Complex
pdb|3CJH|H Chain H, Tim8-Tim13 Complex
pdb|3CJH|J Chain J, Tim8-Tim13 Complex
pdb|3CJH|L Chain L, Tim8-Tim13 Complex
Length = 64
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 19 NTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQ 75
N+ ++ + ++ T ICFK CV ++ +EE C NC+ +++ RI +Q
Sbjct: 5 NSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQ 61
>pdb|3CJH|A Chain A, Tim8-Tim13 Complex
pdb|3CJH|C Chain C, Tim8-Tim13 Complex
pdb|3CJH|E Chain E, Tim8-Tim13 Complex
pdb|3CJH|G Chain G, Tim8-Tim13 Complex
pdb|3CJH|I Chain I, Tim8-Tim13 Complex
pdb|3CJH|K Chain K, Tim8-Tim13 Complex
Length = 64
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 29 NKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRIS 71
NKI+E CF+ C ++ + ++C CL KYM+ + IS
Sbjct: 10 NKISENCFEKC----LTSPYATRNDACIDQCLAKYMRSWNVIS 48
>pdb|1N82|A Chain A, The High-Resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|1N82|B Chain B, The High-Resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|3MUA|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MUA|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 25 LLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMK 65
L+ +N+ + F+D HF+SR++ + C ++ + + K
Sbjct: 83 LVWHNQTPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYK 123
>pdb|3MUI|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MUI|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 25 LLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMK 65
L+ +N+ + F+D HF+SR++ + C ++ + + K
Sbjct: 83 LVWHNQTPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYK 123
>pdb|3MS8|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MS8|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 25 LLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMK 65
L+ +N+ + F+D HF+SR++ + C ++ + + K
Sbjct: 83 LVWHNQTPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYK 123
>pdb|2Q8X|A Chain A, The High-resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|2Q8X|B Chain B, The High-resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|3MSD|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSD|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSG|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSG|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 25 LLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMK 65
L+ +N+ + F+D HF+SR++ + C ++ + + K
Sbjct: 83 LVWHNQTPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYK 123
>pdb|3N41|F Chain F, Crystal Structure Of The Mature Envelope Glycoprotein
Complex (Spontaneous Cleavage) Of Chikungunya Virus.
pdb|3N42|F Chain F, Crystal Structures Of The Mature Envelope Glycoprotein
Complex (Furin Cleavage) Of Chikungunya Virus.
pdb|3N43|F Chain F, Crystal Structures Of The Mature Envelope Glycoprotein
Complex (Trypsin Cleavage) Of Chikungunya Virus.
pdb|3N44|F Chain F, Crystal Structure Of The Mature Envelope Glycoprotein
Complex (Trypsin Cleavage; Osmium Soak) Of Chikungunya
Virus
Length = 473
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 35 CFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQMLQNEQMLAASGGN 92
CF D N +S +K ESC Y T+ S +++ N + A + G+
Sbjct: 116 CFCDAENTQLSEAHVEKSESCKTEFASAYRAHTASASAKLRVLYQGNNITVTAYANGD 173
>pdb|3N40|F Chain F, Crystal Structure Of The Immature Envelope Glycoprotein
Complex Of Chikungunya Virus
Length = 393
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 35 CFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQMLQNEQMLAASGGN 92
CF D N +S +K ESC Y T+ S +++ N + A + G+
Sbjct: 96 CFCDAENTQLSEAHVEKSESCKTEFASAYRAHTASASAKLRVLYQGNNITVTAYANGD 153
>pdb|2XFB|A Chain A, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|D Chain D, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|F Chain F, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|H Chain H, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
Length = 391
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 35 CFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQMLQNEQMLAASGGN 92
CF D N +S +K ESC Y T+ S +++ N + A + G+
Sbjct: 94 CFCDAENTQLSEAHVEKSESCKTEFASAYRAHTASASAKLRVLYQGNNITVTAYANGD 151
>pdb|2XFC|A Chain A, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|D Chain D, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|F Chain F, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|H Chain H, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
Length = 439
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 35 CFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQMLQNEQMLAASGGN 92
CF D N +S +K ESC Y T+ S +++ N + A + G+
Sbjct: 94 CFCDAENTQLSEAHVEKSESCKTEFASAYRAHTASASAKLRVLYQGNNITVTAYANGD 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.128 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,229,860
Number of Sequences: 62578
Number of extensions: 63055
Number of successful extensions: 159
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 15
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)