RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16108
(94 letters)
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A;
protein transport, mitochondrial protein import, TIM
complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Length = 89
Score = 77.0 bits (189), Expect = 2e-20
Identities = 41/74 (55%), Positives = 54/74 (72%)
Query: 17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
QI FKEFL YNK+TE CF DCV F +RE+ +E +C+ +CL+KY+KMT RISMR QE
Sbjct: 10 QIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQE 69
Query: 77 FQMLQNEQMLAASG 90
+ + QNE + A +G
Sbjct: 70 YHIQQNEALAAKAG 83
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9;
alpha-propeller, helix-turn-helix, intramolecular
disulfides., chaperone; 2.50A {Saccharomyces
cerevisiae}
Length = 89
Score = 76.9 bits (189), Expect = 2e-20
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 3 DQLNEAQQNEMMKT-QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLE 61
D LN +Q E K + K+F+ Y+ + E CF DCVN F + ++T KE++C + C E
Sbjct: 4 DALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSE 63
Query: 62 KYMKMTSRISMRMQEFQMLQNEQM 85
K++K + R+ R QE + +
Sbjct: 64 KFLKHSERVGQRFQEQNAALGQGL 87
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10;
alpha-propeller, helix-turn-helix, intramolecular
disulfides., chaperone; 2.50A {Saccharomyces
cerevisiae}
Length = 95
Score = 59.6 bits (144), Expect = 2e-13
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 1 MGDQLNEAQQNEMMKTQINTFKEFLLQYNKITEICFKDCVNHFISR-EITKKEESCAVNC 59
G + + ++ +NK+ C+K C+N S E+ K E SC C
Sbjct: 8 FGGGQPQLSSQQKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRC 67
Query: 60 LEKYMKMTSRISMRMQEFQM 79
+ KY + ++ MQ+
Sbjct: 68 VAKYFETNVQVGENMQKMGQ 87
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10;
protein transport, mitochondrial protein import, TIM
complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Length = 90
Score = 58.9 bits (142), Expect = 3e-13
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 9 QQNEMMKTQINTFKEFLLQYNKITEICFKDCVNH-FISREITKKEESCAVNCLEKYMKMT 67
+ YN++T C + CV + E++K E C C+ KY+ +
Sbjct: 3 PLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIH 62
Query: 68 SRISMRMQEFQMLQNEQMLAASGGNKP 94
R+ ++ E M E M + P
Sbjct: 63 ERMGKKLTELSMQDEELMKRVQQSSGP 89
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic
heterohexamer, chaperone, M binding, mitochondrion,
protein transport; 2.60A {Saccharomyces cerevisiae}
Length = 64
Score = 43.7 bits (103), Expect = 1e-07
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 10 QNEMMKTQINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSR 69
+ E K ++ ++ T ICFK CV ++ +EE C NC+ +++ R
Sbjct: 2 EGENSKQKVQM------SIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIR 55
Query: 70 ISMRMQEFQ 78
I +Q +
Sbjct: 56 IVNGLQNTR 64
>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic
heterohexamer, chaperone, M binding, mitochondrion,
protein transport; 2.60A {Saccharomyces cerevisiae}
Length = 64
Score = 37.5 bits (87), Expect = 3e-05
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 29 NKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQMLQNEQ 84
NKI+E CF+ C ++ + ++C CL KYM+ + IS +QN
Sbjct: 10 NKISENCFEKC----LTSPYATRNDACIDQCLAKYMRSWNVISKAYI--SRIQNAS 59
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.007
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 12 EMMKTQINTFKEFL-LQYNKITEICFKDCVNHFISREITKKEESCAV 57
E ++ + T+ + + +K+T I + +N E K + +V
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTI-IESSLNVLEPAEYRKMFDRLSV 380
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Length = 343
Score = 26.5 bits (59), Expect = 1.1
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 9 QQNEMMKTQINTFKEFLLQYNKI 31
+ + I+ F ++ + +KI
Sbjct: 2 LTKVIAQAHIDHFTKWFERADKI 24
>3p8c_B NCK-associated protein 1; actin polymerization, protein binding;
2.29A {Homo sapiens}
Length = 1128
Score = 26.6 bits (58), Expect = 1.2
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 36 FKDCVNHFISREITKKEESC---AVNCLEKYMKMTSRISMRMQEFQMLQNEQML 86
F C + E + L++ K + + Q ++Q+L
Sbjct: 576 FMSCTHELCPEERHHIGDRSLSLCNMFLDEMAKQARNLITDICTEQCTLSDQLL 629
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein
transport, transc transcription regulation, transport,
endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Length = 234
Score = 26.1 bits (57), Expect = 2.0
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 2 GDQLNEAQQNEMMKTQINTFKEFLLQY 28
G L E Q +M Q++ FK L ++
Sbjct: 1 GTVLAEDQLAQM-SKQLDMFKTNLEEF 26
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 2.6
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 19/71 (26%)
Query: 3 DQLNEAQQNEMMKTQINTFKEFLLQYNKI-------------TEICFKDCV------NHF 43
+ Q ++++ + F+ L+ N I T + K+ +
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 44 ISREITKKEES 54
R KK S
Sbjct: 133 AKRPFDKKSNS 143
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT,
endosomal, trafficking, protein complex, transport
protein; 3.60A {Saccharomyces cerevisiae} SCOP:
a.4.5.54 a.4.5.54 PDB: 1w7p_A
Length = 233
Score = 25.3 bits (55), Expect = 3.5
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 2 GDQLNEAQQNEMMKTQINTFKEFLLQY 28
+ E Q E+ + Q+ F+E L+++
Sbjct: 21 NKTILEKQSVEL-RDQLMVFQERLVEF 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.128 0.362
Gapped
Lambda K H
0.267 0.0611 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,272,171
Number of extensions: 58969
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 25
Length of query: 94
Length of database: 6,701,793
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,998,612
Effective search space: 164954196
Effective search space used: 164954196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)