RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16108
         (94 letters)



>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane
          translocase subunit Tim9 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 73

 Score = 81.0 bits (200), Expect = 1e-22
 Identities = 39/70 (55%), Positives = 52/70 (74%)

Query: 21 FKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQML 80
          FKEFL  YNK+TE CF DCV  F +RE+  +E +C+ +CL+KY+KMT RISMR QE+ + 
Sbjct: 2  FKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQ 61

Query: 81 QNEQMLAASG 90
          QNE + A +G
Sbjct: 62 QNEALAAKAG 71


>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane
          translocase subunit Tim10 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 65

 Score = 57.1 bits (138), Expect = 2e-13
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 28 YNKITEICFKDCVNH-FISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQM 79
          YN++T  C + CV   +   E++K E  C   C+ KY+ +  R+  ++ E  M
Sbjct: 10 YNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSM 62


>d2h6ma1 b.47.1.4 (A:1-212) 3C cysteine protease (picornain 3C)
           {Human hepatitis A virus [TaxId: 208726]}
          Length = 212

 Score = 25.7 bits (56), Expect = 0.81
 Identities = 7/43 (16%), Positives = 14/43 (32%)

Query: 36  FKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQ 78
           F+D   HFI +    +  +     +         IS    + +
Sbjct: 96  FRDITQHFIKKGDVPRALNRLATLVTTVNGTPMLISEGPLKME 138


>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 145

 Score = 23.9 bits (52), Expect = 3.1
 Identities = 6/28 (21%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 1  MGDQLNEAQQNEMMKTQINTFKEFLLQY 28
          +   + E +Q+  ++ Q+  F+E L+++
Sbjct: 1  VNKTILE-KQSVELRDQLMVFQERLVEF 27


>d2pbea1 a.160.1.5 (A:138-282) Aminoglycoside
          6-adenylyltransferase AadK {Bacillus subtilis [TaxId:
          1423]}
          Length = 145

 Score = 23.5 bits (51), Expect = 4.1
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 6/43 (13%)

Query: 29 NKITEICFKDCVNHF------ISREITKKEESCAVNCLEKYMK 65
           + T   F DC N F      + + + + E   A++ L + ++
Sbjct: 8  KRPTAREFDDCCNEFWMVSTYVVKGLARNEILFAIDHLNEIVR 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.128    0.362 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 313,254
Number of extensions: 12438
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 21
Length of query: 94
Length of database: 2,407,596
Length adjustment: 57
Effective length of query: 37
Effective length of database: 1,624,986
Effective search space: 60124482
Effective search space used: 60124482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)