BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16109
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P46461|NSF1_DROME Vesicle-fusing ATPase 1 OS=Drosophila melanogaster GN=comt PE=2
SV=1
Length = 745
Score = 158 bits (400), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 74/123 (60%), Positives = 103/123 (83%), Gaps = 2/123 (1%)
Query: 1 MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
MTLQAL VLLKK+PP+ +KLL+LCT+S REVLE++++L+ F++VLHVPNLS P+H+L V+
Sbjct: 621 MTLQALLVLLKKQPPKGRKLLILCTSSRREVLEEMEMLTAFTSVLHVPNLSKPDHVLAVL 680
Query: 61 EESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
E +D+FSK ++Q I + + RVF+GI+KLLGLIDMARQ E++ R +KFL+K+E+EG
Sbjct: 681 ENTDIFSKGEIQAIGKKMAGK--RVFIGIKKLLGLIDMARQTEQSQRAIKFLSKMEEEGG 738
Query: 121 LDM 123
LDM
Sbjct: 739 LDM 741
>sp|P54351|NSF2_DROME Vesicle-fusing ATPase 2 OS=Drosophila melanogaster GN=Nsf2 PE=2
SV=2
Length = 752
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 92/113 (81%), Gaps = 2/113 (1%)
Query: 11 KKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQ 70
KK+PP+ +KLL+LCT+S R+VLE++++LS F++VLHV NLSTPE++L V+++SD+FS ++
Sbjct: 636 KKQPPKGRKLLILCTSSRRDVLEEMEMLSAFTSVLHVSNLSTPENVLAVLDDSDLFSPEE 695
Query: 71 VQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCLDM 123
+Q I R + R+ +GI+KLL LIDM RQ E + RV+KFL+K+E+EG L+M
Sbjct: 696 LQSIARKMAGK--RLCIGIKKLLALIDMIRQSEPHQRVIKFLSKMEEEGGLEM 746
>sp|Q94392|NSF_CAEEL Vesicle-fusing ATPase OS=Caenorhabditis elegans GN=nsf-1 PE=1 SV=2
Length = 824
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 47/119 (39%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 1 MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
+ +QAL VLL PP +L V+ T+S R L D+ ++ F V+ +P L+T ++NVI
Sbjct: 698 LVIQALLVLLNAPPPAGHRLFVIATSSDRMFLRDMGLMDVFGDVIDIPKLTTAGQMMNVI 757
Query: 61 EESDVFSKKQVQEIERYLHQ-HKARVF--VGIRKLLGLIDMARQIEENYRVMKFLTKLE 116
+ES+++S Q+ IE+ L + F VGI+ LL LI+ ARQ E +YRV L +E
Sbjct: 758 QESNIYSDDQLPMIEQKLASICRGEGFHGVGIKHLLELIESARQCEADYRVPTLLNMME 816
>sp|Q5R410|NSF_PONAB Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 SV=1
Length = 744
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Query: 11 KKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQ 70
KK PP+ +KLL++ TTS ++VL+++++L+ FS +HVPN++T E LL +E F K+
Sbjct: 631 KKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKE 690
Query: 71 VQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
I + + K V++GI+KLL LI+M+ Q++ YRV KFL L +EG
Sbjct: 691 RTTIAQQVKGKK--VWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGA 738
>sp|P46459|NSF_HUMAN Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3
Length = 744
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Query: 11 KKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQ 70
KK PP+ +KLL++ TTS ++VL+++++L+ FS +HVPN++T E LL +E F K+
Sbjct: 631 KKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKE 690
Query: 71 VQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
I + + K V++GI+KLL LI+M+ Q++ YRV KFL L +EG
Sbjct: 691 RTTIAQQVKGKK--VWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGA 738
>sp|P18708|NSF_CRIGR Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF PE=1 SV=1
Length = 744
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Query: 11 KKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQ 70
KK PP+ +KLL++ TTS ++VL+++++L+ FS +HVPN++T E LL +E F K+
Sbjct: 631 KKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKE 690
Query: 71 VQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
I + + K V++GI+KLL LI+M+ Q++ YRV KFL L +EG
Sbjct: 691 RTTIAQQVKGKK--VWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGA 738
>sp|Q9QUL6|NSF_RAT Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf PE=1 SV=1
Length = 744
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Query: 11 KKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQ 70
KK PP+ +KLL++ TTS ++VL+++++L+ FS +HVPN++T E LL +E F K+
Sbjct: 631 KKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKE 690
Query: 71 VQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
I + + K V++GI+KLL LI+M+ Q++ YRV KFL + +EG
Sbjct: 691 RTTIAQQVKGKK--VWIGIKKLLMLIEMSLQMDPEYRVRKFLALMREEGA 738
>sp|P46460|NSF_MOUSE Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 SV=2
Length = 744
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/109 (42%), Positives = 74/109 (67%), Gaps = 2/109 (1%)
Query: 11 KKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQ 70
KK PP+ +KLL++ TTS ++VL+++++L+ FS +HVPN++T E LL +E F K+
Sbjct: 631 KKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKE 690
Query: 71 VQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEG 119
I + + K V++GI+KLL LI+M+ Q++ YRV KFL + +EG
Sbjct: 691 RTTIAQQVKGKK--VWIGIKKLLMLIEMSLQMDPEYRVRKFLALMREEG 737
>sp|Q75JI3|NSF_DICDI Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1
Length = 738
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 7/117 (5%)
Query: 1 MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
+ LQ L VL K+ PP+ +KLLV+ TTS ++L+D+ I+ F+ VL VP++ST + V
Sbjct: 623 LILQTLAVLFKRTPPKGRKLLVIATTSNPDILKDMDIMDCFATVLSVPSISTAKEFQTVC 682
Query: 61 EESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLED 117
E F++K+ E + + I++++ +++MARQ E N+ + F LED
Sbjct: 683 FELG-FTQKEASEAASFFTSP-----ITIKQIIMIVEMARQEEGNF-IDNFKMCLED 732
>sp|P18759|SEC18_YEAST Vesicular-fusion protein SEC18 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SEC18 PE=1 SV=2
Length = 758
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 37/102 (36%), Positives = 60/102 (58%)
Query: 3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE 62
LQ L+V LK++PP++++LL++ TTS VL+ + ILS F + VPN++ + L NV+ E
Sbjct: 644 LQMLKVALKRKPPQDRRLLIMTTTSAYSVLQQMDILSCFDNEIAVPNMTNLDELNNVMIE 703
Query: 63 SDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEE 104
S+ ++ L + VGI+K L I+ AR E+
Sbjct: 704 SNFLDDAGRVKVINELSRSCPNFNVGIKKTLTNIETARHDED 745
>sp|Q9P7Q4|SEC18_SCHPO Vesicular-fusion protein sec18 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sec18 PE=1 SV=1
Length = 792
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE 62
LQ L VL KK+PP+ +LL+L TTS R +L + + F A + VPN+S L +I+
Sbjct: 672 LQTLMVLFKKQPPKGHRLLILATTSERTMLSRMDMTQSFDAEIAVPNVSNVTELDRIIQS 731
Query: 63 SDVFSKKQV-----QEIERYLHQHKARVFVGIRKLLGLIDMARQ 101
D F+ V Q ++ + V VG+ K+L + + A+Q
Sbjct: 732 IDSFADSNVRADTLQRLQNFTGTDA--VNVGVAKILMIAETAKQ 773
>sp|Q9M0Y8|NSF_ARATH Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2
Length = 742
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 4 QALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEES 63
Q L VLLK+ PP+ KKLLV TTS LE + I FS VP L E V+ +
Sbjct: 618 QTLMVLLKRLPPKGKKLLVFGTTSEVTFLESVGISDCFSVTHSVPTLQK-EDAKKVLNQL 676
Query: 64 DVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEEN 105
++FS+ V L+ + I+K+ LI+MA Q E
Sbjct: 677 NLFSEDDVDSAAEALND------MPIKKIYMLIEMAAQGENG 712
>sp|P34732|SEC18_CANAX Vesicular-fusion protein SEC18 OS=Candida albicans GN=SEC18 PE=3
SV=2
Length = 794
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE 62
LQ L V L K+PP+ ++LL++ TTS +V + + ++ F+ + VP + E + V+++
Sbjct: 680 LQVLMVYLTKKPPKGRRLLIIGTTSQYQVFKHMNLIDSFNDAIAVPPIKHIEEVGKVLDK 739
Query: 63 SDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMAR 100
+K + +EI L ++ + +GI+ L+ ++ +++
Sbjct: 740 LGFMNKSEREEILSQLSRYD--INIGIKSLIDVLMVSK 775
>sp|A3DE59|RS2_CLOTH 30S ribosomal protein S2 OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=rpsB PE=3 SV=1
Length = 252
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 65 VFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCLDM 123
V +KKQ Q+ R Q + +V R L G++ + I+ +K LTK+E+EG D+
Sbjct: 70 VGTKKQAQDSIREEAQRADQYYVNARWLGGMLTNFKTIKGRINRLKELTKMEEEGVFDV 128
>sp|B4EZ42|MEND_PROMH 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Proteus mirabilis (strain HI4320) GN=menD
PE=3 SV=1
Length = 561
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 58 NVIEESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVM 109
+V E +D F + QV +L H ++FVG ++ LID Q+ + Y VM
Sbjct: 359 HVTEVTDYFGEAQVAHQLDHLLPHNGQLFVGNSLIVRLIDAFAQLPQGYPVM 410
>sp|Q60736|ZP3R_MOUSE Zona pellucida sperm-binding protein 3 receptor OS=Mus musculus
GN=Zp3r PE=1 SV=1
Length = 579
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 27 SCR-EVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIERYLHQHK 82
SC+ EVLED +I+S+ + +LH LS+PE + ++ +F EIER HQ +
Sbjct: 508 SCQMEVLEDCRIVSRGAQLLHC--LSSPEDVHRALKVYKLF-----LEIERLEHQKE 557
>sp|A2RT67|DEND3_MOUSE DENN domain-containing protein 3 OS=Mus musculus GN=Dennd3 PE=2
SV=2
Length = 1274
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 8 VLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTP 53
+ L + PPRN L ++ T++CR LK+ K + + +P++ P
Sbjct: 561 ISLPELPPRNSSLRIMDTSNCRSSSPVLKVTPKSTYMFKIPDIHFP 606
>sp|A9W5Y4|SYA_METEP Alanine--tRNA ligase OS=Methylobacterium extorquens (strain PA1)
GN=alaS PE=3 SV=1
Length = 891
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 18/112 (16%)
Query: 25 TTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIERYLHQHKAR 84
T + R + + LS+ + +L P PE L +IEE + +E+ L + +
Sbjct: 716 TAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEER--------RRLEKELADARKK 767
Query: 85 VFVG--------IRKLLGLIDMARQIEENYRVMKFLTKLEDEGCLDMGTSIL 128
+ +G R++ G+ MAR +E M+ L L DEG +G+ I+
Sbjct: 768 IAMGGASGGGDEAREINGVKLMARVVEGVE--MRDLKGLADEGKTRLGSGIV 817
>sp|B1ZC90|SYA_METPB Alanine--tRNA ligase OS=Methylobacterium populi (strain ATCC
BAA-705 / NCIMB 13946 / BJ001) GN=alaS PE=3 SV=1
Length = 891
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 18/112 (16%)
Query: 25 TTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIERYLHQHKAR 84
T + R + + LS+ + +L P PE L +IEE + +E+ L + +
Sbjct: 716 TAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEER--------RRLEKELADARKK 767
Query: 85 VFVG--------IRKLLGLIDMARQIEENYRVMKFLTKLEDEGCLDMGTSIL 128
+ +G R++ G+ MAR +E M+ L L DEG +G+ I+
Sbjct: 768 IAMGGASGGGDEAREVNGVRLMARVVEGVE--MRDLKGLADEGKSRLGSGIV 817
>sp|Q66C54|HIS6_YERPS Imidazole glycerol phosphate synthase subunit HisF OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=hisF
PE=3 SV=1
Length = 258
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 34 DLKILSKFSAVLHVP-----NLSTPEHLLNVIEESD--------VFSKK--QVQEIERYL 78
DL+ L + A+ HVP TPEH L ++D VF K+ + E+++YL
Sbjct: 189 DLRQLQQMRAICHVPLIASGGAGTPEHFLEAFRDADVDGALAASVFHKQIINIGELKKYL 248
Query: 79 HQHKARVFV 87
+ + V
Sbjct: 249 SEQGVEIRV 257
>sp|B2JZM4|HIS6_YERPB Imidazole glycerol phosphate synthase subunit HisF OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=hisF
PE=3 SV=1
Length = 258
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 34 DLKILSKFSAVLHVP-----NLSTPEHLLNVIEESD--------VFSKK--QVQEIERYL 78
DL+ L + A+ HVP TPEH L ++D VF K+ + E+++YL
Sbjct: 189 DLRQLQQMRAICHVPLIASGGAGTPEHFLEAFRDADVDGALAASVFHKQIINIGELKKYL 248
Query: 79 HQHKARVFV 87
+ + V
Sbjct: 249 SEQGVEIRV 257
>sp|P46939|UTRO_HUMAN Utrophin OS=Homo sapiens GN=UTRN PE=1 SV=2
Length = 3433
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 17/79 (21%)
Query: 41 FSAVLHVPNLSTPEHLLNVIEESDVFSKKQV---QEIERYLHQ-HKARVFVGIRKLLGLI 96
F+AVLH + D+FS +V IER H KA+ ++GI KLL
Sbjct: 185 FNAVLHR-------------HKPDLFSWDKVVKMSPIERLEHAFSKAQTYLGIEKLLDPE 231
Query: 97 DMARQIEENYRVMKFLTKL 115
D+A Q+ + ++ +LT L
Sbjct: 232 DVAVQLPDKKSIIMYLTSL 250
>sp|A6GVV9|ATPB_FLAPJ ATP synthase subunit beta OS=Flavobacterium psychrophilum (strain
JIP02/86 / ATCC 49511) GN=atpD PE=3 SV=1
Length = 503
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 24 CTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIERYLHQ--H 81
C +E+L+ K L A+L + LS E D S + + ++R+L Q H
Sbjct: 396 CAQRVKEILQKYKQLQDIIAILGMEELS----------EEDKLSVSRARRVQRFLSQPFH 445
Query: 82 KARVFVGIRKLL 93
A F G++ +L
Sbjct: 446 VAEQFTGLKGVL 457
>sp|Q44144|NIFE_NOSS1 Nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=nifE PE=3
SV=1
Length = 480
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 63 SDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRV 108
S + + +EI RY H+ K V + R LL +MAR++EENY +
Sbjct: 224 SKITGDARFEEI-RYAHRAKLNVMICSRALL---NMARKMEENYGI 265
>sp|A5FLS1|ATPB_FLAJ1 ATP synthase subunit beta OS=Flavobacterium johnsoniae (strain ATCC
17061 / DSM 2064 / UW101) GN=atpD PE=3 SV=1
Length = 503
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 24 CTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIERYLHQ--H 81
C +E+L+ K L A+L + LS E D S + + ++R+L Q H
Sbjct: 396 CAQRVKEILQKYKQLQDIIAILGMEELS----------EEDKLSVSRARRVQRFLSQPFH 445
Query: 82 KARVFVGIRKLL 93
A F GI +L
Sbjct: 446 VAEQFTGIPGVL 457
>sp|A0RGR8|Y3159_BACAH UPF0061 protein BALH_3159 OS=Bacillus thuringiensis (strain Al
Hakam) GN=BALH_3159 PE=3 SV=1
Length = 488
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 54 EHLLNVIEESDVFSKKQVQ-EIERYLHQHKARVFVGIRKLLGLIDMARQ----IEENYRV 108
E L+ ++ E + + K Q EI ++ Q++ + F+G++K LGL Q IE+ +++
Sbjct: 306 ESLIPILHEDEEEALKIAQDEISKFSVQYEKQWFIGMKKKLGLFSNEEQDQSLIEQLFKM 365
Query: 109 MK 110
M+
Sbjct: 366 ME 367
>sp|Q053P2|DAPB_LEPBL 4-hydroxy-tetrahydrodipicolinate reductase OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain L550)
GN=dapB PE=3 SV=1
Length = 269
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 16 RNKKLLVLCTTSCREVLED-LKILSKFSAVLHVPNLSTPEHLLNVIEE--SDVFSKKQVQ 72
+++K +V+ TT E+ +D LK+ SK +++ PN+S +LL + E + +
Sbjct: 94 QHRKPVVIGTTGLTELQKDALKVASKEIGIVYSPNMSIGVNLLFKLTEIAAKAMGENSDI 153
Query: 73 EIERYLHQHK 82
EI+ H+HK
Sbjct: 154 EIQDIHHRHK 163
>sp|Q04U79|DAPB_LEPBJ 4-hydroxy-tetrahydrodipicolinate reductase OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain JB197)
GN=dapB PE=3 SV=1
Length = 269
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 16 RNKKLLVLCTTSCREVLED-LKILSKFSAVLHVPNLSTPEHLLNVIEE--SDVFSKKQVQ 72
+++K +V+ TT E+ +D LK+ SK +++ PN+S +LL + E + +
Sbjct: 94 QHRKPVVIGTTGLTELQKDALKVASKEIGIVYSPNMSIGVNLLFKLTEIAAKAMGENSDI 153
Query: 73 EIERYLHQHK 82
EI+ H+HK
Sbjct: 154 EIQDIHHRHK 163
>sp|A0PZM2|DAPB_CLONN 4-hydroxy-tetrahydrodipicolinate reductase OS=Clostridium novyi
(strain NT) GN=dapB PE=3 SV=1
Length = 252
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 21 LVLCTTS-CREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE---SDVFSKKQVQEIER 76
+VLCTT +E L+ + SK V H N+S +L+N I + + ++ ++ IE+
Sbjct: 82 VVLCTTGYSKEQLDKIDEYSKIVPVFHSANMSIGINLINNILKDISAMLYENYDIEIIEK 141
Query: 77 YLHQHKARVFVGIRKLLG 94
+ H K G LLG
Sbjct: 142 H-HNQKVDAPSGTALLLG 158
>sp|Q9Y6V0|PCLO_HUMAN Protein piccolo OS=Homo sapiens GN=PCLO PE=1 SV=4
Length = 5065
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 6 LRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDV 65
+++ LKKE + + L++ CR I KF + H+P+L +++N+ + V
Sbjct: 4934 IKIALKKEMKTDGEQLIVEILQCR------NITYKFKSPDHLPDLYVKIYVMNISTQKKV 4987
Query: 66 FSKK 69
KK
Sbjct: 4988 IKKK 4991
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,465,301
Number of Sequences: 539616
Number of extensions: 1634114
Number of successful extensions: 4836
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 4808
Number of HSP's gapped (non-prelim): 50
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)