Query psy16109
Match_columns 129
No_of_seqs 101 out of 223
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 21:06:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2n_A N-ethylmaleimide-sensit 99.4 3.2E-12 1.1E-16 99.0 13.3 118 2-121 150-267 (272)
2 1w5s_A Origin recognition comp 91.4 0.25 8.4E-06 38.9 4.9 73 5-78 163-249 (412)
3 1xwi_A SKD1 protein; VPS4B, AA 87.9 0.95 3.2E-05 35.7 5.7 72 3-76 133-209 (322)
4 2zan_A Vacuolar protein sortin 87.7 0.86 2.9E-05 37.7 5.6 72 3-76 255-331 (444)
5 2qby_B CDC6 homolog 3, cell di 87.3 3.1 0.00011 32.2 8.4 60 18-78 163-231 (384)
6 3syl_A Protein CBBX; photosynt 86.7 2.2 7.4E-05 32.3 7.0 95 3-101 156-260 (309)
7 3eie_A Vacuolar protein sortin 86.5 1.3 4.5E-05 34.5 5.8 58 3-62 138-195 (322)
8 2qp9_X Vacuolar protein sortin 86.5 1.2 4.1E-05 35.6 5.7 73 3-77 171-248 (355)
9 2qby_A CDC6 homolog 1, cell di 82.8 7.5 0.00026 29.6 8.5 73 3-78 149-231 (386)
10 1fnn_A CDC6P, cell division co 80.5 7.5 0.00025 29.9 7.8 76 2-78 141-227 (389)
11 3d8b_A Fidgetin-like protein 1 79.5 4 0.00014 32.4 6.1 74 3-78 204-283 (357)
12 4b4t_L 26S protease subunit RP 78.8 5.5 0.00019 33.5 7.0 56 3-61 305-362 (437)
13 3b9p_A CG5977-PA, isoform A; A 78.2 5.7 0.0002 29.9 6.4 71 5-77 143-220 (297)
14 3vfd_A Spastin; ATPase, microt 78.1 5.2 0.00018 31.9 6.4 72 5-78 237-314 (389)
15 1ofh_A ATP-dependent HSL prote 77.6 3.6 0.00012 30.7 5.0 79 19-99 168-269 (310)
16 4b4t_K 26S protease regulatory 73.4 3.5 0.00012 34.6 4.3 44 18-61 310-354 (428)
17 1njg_A DNA polymerase III subu 73.0 19 0.00065 24.8 7.6 70 3-78 143-217 (250)
18 4b4t_M 26S protease regulatory 71.6 4.8 0.00016 33.8 4.8 55 5-61 307-362 (434)
19 2v1u_A Cell division control p 71.6 9.1 0.00031 29.2 6.1 61 17-78 165-235 (387)
20 4b4t_H 26S protease regulatory 65.7 4.1 0.00014 34.8 3.2 42 18-61 347-390 (467)
21 4b4t_J 26S protease regulatory 65.4 3.4 0.00012 34.6 2.6 56 4-61 273-329 (405)
22 4b4t_I 26S protease regulatory 65.3 5.2 0.00018 33.9 3.7 43 18-61 320-363 (437)
23 2p1h_A APAF-1, apoptotic prote 64.3 25 0.00087 22.5 6.7 59 53-120 24-82 (94)
24 3h4m_A Proteasome-activating n 63.8 6.7 0.00023 29.2 3.7 43 18-62 155-199 (285)
25 3cf0_A Transitional endoplasmi 62.0 11 0.00037 28.9 4.7 56 3-61 139-196 (301)
26 2r62_A Cell division protease 61.8 1.4 4.8E-05 32.8 -0.4 50 10-61 142-193 (268)
27 2qz4_A Paraplegin; AAA+, SPG7, 61.6 17 0.00057 26.4 5.5 42 18-61 144-187 (262)
28 2chg_A Replication factor C sm 60.7 37 0.0013 23.1 9.2 84 3-100 119-208 (226)
29 3bos_A Putative DNA replicatio 59.6 8 0.00027 27.4 3.4 88 4-99 124-220 (242)
30 1iqp_A RFCS; clamp loader, ext 59.5 49 0.0017 24.5 8.0 69 3-77 127-200 (327)
31 1a5t_A Delta prime, HOLB; zinc 57.2 34 0.0011 26.6 6.9 67 4-76 126-192 (334)
32 3cf2_A TER ATPase, transitiona 55.2 14 0.00047 33.5 4.8 57 2-61 324-382 (806)
33 1g8p_A Magnesium-chelatase 38 53.7 13 0.00044 28.3 3.9 42 19-61 187-229 (350)
34 1jr3_A DNA polymerase III subu 52.7 44 0.0015 25.4 6.8 68 3-76 136-208 (373)
35 3cf2_A TER ATPase, transitiona 51.4 5 0.00017 36.4 1.3 57 2-61 600-658 (806)
36 2qen_A Walker-type ATPase; unk 49.0 77 0.0026 23.5 7.6 58 19-77 164-234 (350)
37 1sxj_D Activator 1 41 kDa subu 47.2 85 0.0029 23.5 7.6 68 4-77 151-223 (353)
38 3pfi_A Holliday junction ATP-d 46.4 13 0.00044 28.4 2.8 55 20-76 155-214 (338)
39 1ypw_A Transitional endoplasmi 46.4 7 0.00024 34.9 1.4 73 3-78 601-694 (806)
40 3uk6_A RUVB-like 2; hexameric 45.8 64 0.0022 24.6 6.8 39 38-78 248-291 (368)
41 3te6_A Regulatory protein SIR3 45.5 14 0.00047 29.6 2.9 45 16-61 160-208 (318)
42 4fcw_A Chaperone protein CLPB; 45.1 21 0.00072 26.6 3.8 25 37-62 203-227 (311)
43 1l8q_A Chromosomal replication 43.9 48 0.0016 25.2 5.7 70 4-76 118-196 (324)
44 1sxj_E Activator 1 40 kDa subu 42.9 41 0.0014 25.6 5.2 66 4-75 152-223 (354)
45 2x8a_A Nuclear valosin-contain 41.9 24 0.00081 26.9 3.7 44 17-62 144-189 (274)
46 3ygs_P Procaspase 9; apoptosis 41.6 44 0.0015 21.9 4.6 60 54-120 24-83 (97)
47 1sxj_B Activator 1 37 kDa subu 41.5 1E+02 0.0035 22.6 7.4 69 4-78 125-198 (323)
48 2gno_A DNA polymerase III, gam 41.2 24 0.00081 27.6 3.7 52 4-63 100-151 (305)
49 3nbx_X ATPase RAVA; AAA+ ATPas 40.0 1.1E+02 0.0038 25.7 7.9 44 18-63 149-195 (500)
50 1jr3_D DNA polymerase III, del 39.3 91 0.0031 23.8 6.8 64 3-72 94-168 (343)
51 2chq_A Replication factor C sm 38.6 89 0.0031 22.9 6.4 66 4-75 120-190 (319)
52 1sxj_A Activator 1 95 kDa subu 38.5 84 0.0029 26.0 6.8 85 3-101 168-257 (516)
53 4go6_A HCF N-terminal chain 1; 38.2 7 0.00024 23.3 0.1 19 11-29 5-23 (45)
54 1sbo_A Putative anti-sigma fac 38.0 12 0.00042 23.6 1.3 40 3-42 62-102 (110)
55 3dwl_G Actin-related protein 2 37.7 22 0.00076 26.1 2.8 69 29-99 44-118 (152)
56 2fnj_C Transcription elongatio 35.6 25 0.00086 23.0 2.6 33 29-62 27-60 (96)
57 3n70_A Transport activator; si 34.9 58 0.002 21.8 4.5 46 4-51 94-145 (145)
58 2fu4_A Ferric uptake regulatio 33.8 80 0.0027 19.1 6.5 65 56-122 4-69 (83)
59 1ixz_A ATP-dependent metallopr 33.4 30 0.001 25.2 3.0 44 17-61 152-196 (254)
60 2c9o_A RUVB-like 1; hexameric 32.6 60 0.002 26.4 4.9 68 3-76 312-396 (456)
61 3t15_A Ribulose bisphosphate c 32.5 33 0.0011 26.2 3.1 73 2-78 128-215 (293)
62 3pxg_A Negative regulator of g 31.8 1.8E+02 0.0062 23.7 7.8 79 19-100 291-382 (468)
63 3hu3_A Transitional endoplasmi 31.7 44 0.0015 28.0 4.0 57 3-62 325-383 (489)
64 3t6o_A Sulfate transporter/ant 31.6 26 0.00089 23.0 2.2 40 3-42 66-107 (121)
65 2jtq_A Phage shock protein E; 30.5 48 0.0017 20.1 3.2 29 13-41 37-70 (85)
66 4hyl_A Stage II sporulation pr 28.6 17 0.00058 23.6 0.8 40 3-42 60-100 (117)
67 1h4x_A SPOIIAA, anti-sigma F f 28.6 29 0.00098 22.3 1.9 39 3-41 60-99 (117)
68 2jvr_A Nucleolar protein 3; RN 28.6 20 0.00069 24.0 1.2 22 3-24 14-35 (111)
69 1um8_A ATP-dependent CLP prote 27.8 1.2E+02 0.0042 23.4 5.8 23 38-61 261-283 (376)
70 1jbk_A CLPB protein; beta barr 27.6 15 0.00052 24.5 0.4 39 19-59 151-193 (195)
71 4i16_A Caspase recruitment dom 27.6 79 0.0027 21.2 4.0 58 53-116 22-79 (93)
72 3oy2_A Glycosyltransferase B73 26.6 85 0.0029 23.9 4.6 62 2-66 202-277 (413)
73 2fna_A Conserved hypothetical 26.2 79 0.0027 23.5 4.3 43 19-62 170-220 (357)
74 1th8_B Anti-sigma F factor ant 25.8 17 0.00058 23.2 0.3 39 3-41 61-100 (116)
75 2cci_F Cell division control p 25.6 21 0.00073 19.4 0.7 7 15-21 21-27 (30)
76 3ny7_A YCHM protein, sulfate t 25.6 55 0.0019 21.5 3.0 40 3-43 64-104 (118)
77 1hv2_A Elongin C, ELC1; protei 25.5 48 0.0016 21.7 2.6 31 29-62 30-60 (99)
78 2wm8_A MDP-1, magnesium-depend 25.5 1.6E+02 0.0055 20.0 5.6 47 17-65 84-135 (187)
79 1hqc_A RUVB; extended AAA-ATPa 25.3 93 0.0032 23.1 4.5 56 19-76 138-198 (324)
80 2amh_A Septum formation protei 24.5 37 0.0013 25.7 2.1 23 18-42 9-37 (207)
81 2rnn_A E3 SUMO-protein ligase 24.5 1.8E+02 0.0062 20.2 6.1 69 47-116 37-112 (114)
82 1iy2_A ATP-dependent metallopr 24.4 26 0.0009 26.1 1.2 45 17-62 176-221 (278)
83 3ddh_A Putative haloacid dehal 23.9 1.5E+02 0.0052 19.8 5.1 46 18-65 123-172 (234)
84 3i5g_C Myosin catalytic light 22.2 1.5E+02 0.005 20.1 4.8 65 53-122 84-156 (159)
85 2kln_A Probable sulphate-trans 22.2 29 0.001 23.1 1.0 39 4-42 67-106 (130)
86 3pvs_A Replication-associated 22.0 92 0.0031 25.6 4.2 59 17-77 133-203 (447)
87 3hm5_A DNA methyltransferase 1 21.9 63 0.0021 21.7 2.6 39 39-79 8-46 (93)
88 3llo_A Prestin; STAS domain, c 21.4 41 0.0014 22.6 1.7 40 3-42 82-122 (143)
89 2a5y_B CED-4; apoptosis; HET: 21.3 75 0.0025 26.4 3.5 41 21-66 267-307 (549)
90 2bjv_A PSP operon transcriptio 21.1 2.4E+02 0.0082 20.3 6.3 23 37-59 165-189 (265)
91 1fs1_B SKP1, cyclin A/CDK2-ass 20.9 76 0.0026 21.9 3.0 27 29-61 28-54 (141)
92 2nz7_A NOD1, caspase recruitme 20.6 1.9E+02 0.0066 19.1 5.9 59 52-119 28-86 (98)
93 1vee_A Proline-rich protein fa 20.5 37 0.0013 22.7 1.3 28 14-41 71-103 (134)
No 1
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.42 E-value=3.2e-12 Score=98.97 Aligned_cols=118 Identities=45% Similarity=0.740 Sum_probs=107.1
Q ss_pred hHHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHhhC
Q psy16109 2 TLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIERYLHQH 81 (129)
Q Consensus 2 ILQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~~~F~~~e~~~i~~~l~~~ 81 (129)
++++|..++...+|.+++++||+||+.++.|+.+.+.+.|...+++|+++..+++..++...+.|+++++..+.+.. .
T Consensus 150 ~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~--~ 227 (272)
T 1d2n_A 150 VLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQV--K 227 (272)
T ss_dssp HHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHH--T
T ss_pred HHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCCCCHHHHHHHHHHh--c
Confidence 57889999999888889999999999999999999999999999999999888999999988889999999888877 6
Q ss_pred CCcccccHHHHHHHHHHHhcccchhhHHHHHHHHHhcCcc
Q psy16109 82 KARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCL 121 (129)
Q Consensus 82 ~~~~~IgIKkLL~~ie~A~~~~~~~~~~~fl~~l~~~g~~ 121 (129)
+..++.++++++.++++|++..+..++..|+.++.+.+.-
T Consensus 228 g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~~~~~ 267 (272)
T 1d2n_A 228 GKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGAS 267 (272)
T ss_dssp TSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHTSCC
T ss_pred CCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHHcCCc
Confidence 6677889999999999999877778899999999999863
No 2
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.40 E-value=0.25 Score=38.87 Aligned_cols=73 Identities=19% Similarity=0.347 Sum_probs=48.5
Q ss_pred HHHHHhcCCCCCC--CeEEEEecCCcHHHHHhCC-----CchhcccceecCCCCCHHHHHHHHHhc-------CCCCHHH
Q psy16109 5 ALRVLLKKEPPRN--KKLLVLCTTSCREVLEDLK-----ILSKFSAVLHVPNLSTPEHLLNVIEES-------DVFSKKQ 70 (129)
Q Consensus 5 aLlVLlkk~PPkG--rrLLViaTTS~~~vL~~lg-----l~~~F~~~i~VP~l~~~~el~~Vl~~~-------~~F~~~e 70 (129)
.|+-++...|..| .++.||+||+.+++++.+. +.+.|...+++|.++ .+++..+++.. +.++++.
T Consensus 163 ~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~-~~e~~~ll~~~~~~~~~~~~~~~~~ 241 (412)
T 1w5s_A 163 TLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYK-SRELYTILEQRAELGLRDTVWEPRH 241 (412)
T ss_dssp HHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCC-HHHHHHHHHHHHHHHBCTTSCCHHH
T ss_pred HHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCC-HHHHHHHHHHHHHhcCCCCCCChHH
Confidence 3444444444335 7899999998788776554 445566669999996 57899888532 2477776
Q ss_pred HHHHHHHH
Q psy16109 71 VQEIERYL 78 (129)
Q Consensus 71 ~~~i~~~l 78 (129)
+..+.+..
T Consensus 242 ~~~i~~~~ 249 (412)
T 1w5s_A 242 LELISDVY 249 (412)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 3
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.87 E-value=0.95 Score=35.67 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=42.8
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHh----cC-CCCHHHHHHHHH
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE----SD-VFSKKQVQEIER 76 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~----~~-~F~~~e~~~i~~ 76 (129)
+..|+..+........+.+|||||+.++.+.. .+...|+..+.+|..+ .++...+++. .+ .+++.++..+.+
T Consensus 133 ~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~-al~rRf~~~i~i~~P~-~~~r~~il~~~l~~~~~~l~~~~l~~la~ 209 (322)
T 1xwi_A 133 KTEFLVQMQGVGVDNDGILVLGATNIPWVLDS-AIRRRFEKRIYIPLPE-PHARAAMFKLHLGTTQNSLTEADFRELGR 209 (322)
T ss_dssp HHHHHHHHHCSSSCCTTEEEEEEESCTTTSCH-HHHHTCCEEEECCCCC-HHHHHHHHHHHHTTCCBCCCHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCEEEEEecCCcccCCH-HHHhhcCeEEEeCCcC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 34455555543222357899999987654432 3445788888998775 5676666654 11 135555554443
No 4
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=87.67 E-value=0.86 Score=37.66 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHhc----C-CCCHHHHHHHHH
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEES----D-VFSKKQVQEIER 76 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~----~-~F~~~e~~~i~~ 76 (129)
+..|+..+........+.+|||||+.++.+.. .+...|+..+.+|... .++...+++.. + .+++.++..+.+
T Consensus 255 ~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~-al~rRf~~~i~i~~P~-~~~r~~il~~~l~~~~~~l~~~~l~~la~ 331 (444)
T 2zan_A 255 KTEFLVQMQGVGVDNDGILVLGATNIPWVLDS-AIRRRFEKRIYIPLPE-AHARAAMFRLHLGSTQNSLTEADFQELGR 331 (444)
T ss_dssp HHHHHTTTTCSSCCCSSCEEEEEESCGGGSCH-HHHTTCCEEEECCCCC-HHHHHHHHHHHHTTSCEECCHHHHHHHHH
T ss_pred HHHHHHHHhCcccCCCCEEEEecCCCccccCH-HHHhhcceEEEeCCcC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 34455555443333457899999987755443 3556888888887764 46666665531 1 135555554444
No 5
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.30 E-value=3.1 Score=32.19 Aligned_cols=60 Identities=12% Similarity=0.186 Sum_probs=40.8
Q ss_pred CeEEEEecCCcHHHHHhCC--CchhcccceecCCCCCHHHHHHHHHhc-------CCCCHHHHHHHHHHH
Q psy16109 18 KKLLVLCTTSCREVLEDLK--ILSKFSAVLHVPNLSTPEHLLNVIEES-------DVFSKKQVQEIERYL 78 (129)
Q Consensus 18 rrLLViaTTS~~~vL~~lg--l~~~F~~~i~VP~l~~~~el~~Vl~~~-------~~F~~~e~~~i~~~l 78 (129)
.++.||+||+....++.+. +.+.|...+++|.++ .+++..+++.. ..++++.++.+.+..
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~-~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~ 231 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYD-AEQLKFILSKYAEYGLIKGTYDDEILSYIAAIS 231 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCC-HHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHH
T ss_pred cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCC-HHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHH
Confidence 5778888888765444332 335677799999995 68999998853 246676666666544
No 6
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=86.74 E-value=2.2 Score=32.29 Aligned_cols=95 Identities=14% Similarity=0.270 Sum_probs=59.6
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCcHH--HHH--hCCCchhcccceecCCCCCHHHHHHHHHh----cC-CCCHHHHHH
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTSCRE--VLE--DLKILSKFSAVLHVPNLSTPEHLLNVIEE----SD-VFSKKQVQE 73 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS~~~--vL~--~lgl~~~F~~~i~VP~l~~~~el~~Vl~~----~~-~F~~~e~~~ 73 (129)
+.+|+-++...+ .++.||+||.... .+. +=.+.+.|+..+++|..+ .+++..+++. .+ .|+++.++.
T Consensus 156 ~~~Ll~~l~~~~---~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~~~~il~~~l~~~~~~~~~~~~~~ 231 (309)
T 3syl_A 156 IEILLQVMENNR---DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYS-DEELFEIAGHMLDDQNYQMTPEAETA 231 (309)
T ss_dssp HHHHHHHHHHCT---TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCC-HHHHHHHHHHHHHHTTCEECHHHHHH
T ss_pred HHHHHHHHhcCC---CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcC-HHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 456666666543 2456666665432 121 246778899999999997 5899888853 23 367777777
Q ss_pred HHHHHhhCCCccccc-HHHHHHHHHHHhc
Q psy16109 74 IERYLHQHKARVFVG-IRKLLGLIDMARQ 101 (129)
Q Consensus 74 i~~~l~~~~~~~~Ig-IKkLL~~ie~A~~ 101 (129)
+.+.+......-+-| +..+..+++.|..
T Consensus 232 l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 232 LRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 766553111122444 7888888887653
No 7
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=86.53 E-value=1.3 Score=34.50 Aligned_cols=58 Identities=19% Similarity=0.161 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHh
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE 62 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~ 62 (129)
...|+..+........+.+|||||..++.|+. .+.+.|+..+.+|..+ .++...+++.
T Consensus 138 ~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~-al~~Rf~~~i~~~~p~-~~~r~~il~~ 195 (322)
T 3eie_A 138 KTELLVQMNGVGNDSQGVLVLGATNIPWQLDS-AIRRRFERRIYIPLPD-LAARTTMFEI 195 (322)
T ss_dssp HHHHHHHHGGGGTSCCCEEEEEEESCGGGSCH-HHHHHCCEEEECCCCC-HHHHHHHHHH
T ss_pred HHHHHHHhccccccCCceEEEEecCChhhCCH-HHHcccCeEEEeCCCC-HHHHHHHHHH
Confidence 45566666654334457899999987655432 2345788888888764 5666666653
No 8
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=86.52 E-value=1.2 Score=35.56 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHh----cC-CCCHHHHHHHHHH
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE----SD-VFSKKQVQEIERY 77 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~----~~-~F~~~e~~~i~~~ 77 (129)
...|+..+........+.+|||||..++.+.. .+...|+..+.+|..+ .++...+++. .+ .+++.++..+.+.
T Consensus 171 ~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~-al~rRf~~~i~i~~P~-~~~r~~il~~~l~~~~~~~~~~~l~~la~~ 248 (355)
T 2qp9_X 171 KTELLVQMNGVGNDSQGVLVLGATNIPWQLDS-AIRRRFERRIYIPLPD-LAARTTMFEINVGDTPSVLTKEDYRTLGAM 248 (355)
T ss_dssp HHHHHHHHHHCC---CCEEEEEEESCGGGSCH-HHHHTCCEEEECCCCC-HHHHHHHHHHHHTTSCBCCCHHHHHHHHHH
T ss_pred HHHHHHHhhcccccCCCeEEEeecCCcccCCH-HHHcccCEEEEeCCcC-HHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Confidence 45566666654333457899999987653321 2445788888888764 5677776653 22 2566666655543
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=82.76 E-value=7.5 Score=29.63 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=44.6
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCC--Cchhcc-cceecCCCCCHHHHHHHHHhc-------CCCCHHHHH
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLK--ILSKFS-AVLHVPNLSTPEHLLNVIEES-------DVFSKKQVQ 72 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lg--l~~~F~-~~i~VP~l~~~~el~~Vl~~~-------~~F~~~e~~ 72 (129)
+..|+-.+... ++.++.+|+||+..+.++.+. +.+.|. ..+++|.++ .+++..+++.. ..++++.++
T Consensus 149 l~~l~~~~~~~--~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~-~~~~~~il~~~~~~~~~~~~~~~~~~~ 225 (386)
T 2qby_A 149 LYKLSRINSEV--NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYN-AEELEDILTKRAQMAFKPGVLPDNVIK 225 (386)
T ss_dssp HHHHHHHHHSC--CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCC-HHHHHHHHHHHHHHHBCSSCSCHHHHH
T ss_pred HHHHhhchhhc--CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCC-HHHHHHHHHHHHHhhccCCCCCHHHHH
Confidence 33444444333 235677778887777666554 335565 489999996 58899888741 356776666
Q ss_pred HHHHHH
Q psy16109 73 EIERYL 78 (129)
Q Consensus 73 ~i~~~l 78 (129)
.+.+..
T Consensus 226 ~l~~~~ 231 (386)
T 2qby_A 226 LCAALA 231 (386)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
No 10
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=80.52 E-value=7.5 Score=29.90 Aligned_cols=76 Identities=12% Similarity=0.210 Sum_probs=48.8
Q ss_pred hHHHHHHHhcCCCCCC-CeEEEEecCCcHHHHHhCC--Cchhccc-ceecCCCCCHHHHHHHHHhc-------CCCCHHH
Q psy16109 2 TLQALRVLLKKEPPRN-KKLLVLCTTSCREVLEDLK--ILSKFSA-VLHVPNLSTPEHLLNVIEES-------DVFSKKQ 70 (129)
Q Consensus 2 ILQaLlVLlkk~PPkG-rrLLViaTTS~~~vL~~lg--l~~~F~~-~i~VP~l~~~~el~~Vl~~~-------~~F~~~e 70 (129)
++++|+-++...+..+ .++.||++|+..++.+.+. +.+.|.. .+++|.++ .+++..+++.. +.|+++.
T Consensus 141 ~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~-~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (389)
T 1fnn_A 141 ILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYT-KDQIFDILLDRAKAGLAEGSYSEDI 219 (389)
T ss_dssp HHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCB-HHHHHHHHHHHHHHHBCTTSSCHHH
T ss_pred HHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCC-HHHHHHHHHHHHHhhcCCCCCCHHH
Confidence 3566666665543312 4677778777777666543 2344654 79999996 47888887642 3578877
Q ss_pred HHHHHHHH
Q psy16109 71 VQEIERYL 78 (129)
Q Consensus 71 ~~~i~~~l 78 (129)
++.+.+..
T Consensus 220 ~~~l~~~~ 227 (389)
T 1fnn_A 220 LQMIADIT 227 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666654
No 11
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=79.48 E-value=4 Score=32.38 Aligned_cols=74 Identities=12% Similarity=0.216 Sum_probs=43.0
Q ss_pred HHHHHHHhcCC-CCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHh----cC-CCCHHHHHHHHH
Q psy16109 3 LQALRVLLKKE-PPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE----SD-VFSKKQVQEIER 76 (129)
Q Consensus 3 LQaLlVLlkk~-PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~----~~-~F~~~e~~~i~~ 76 (129)
++.|+..+... .+.+.+++|||||+.++.+.. .+...|+..+.+|..+ .++...+++. .+ .|++.++..+.+
T Consensus 204 ~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~-~l~~Rf~~~i~i~~p~-~~~r~~il~~~~~~~~~~l~~~~l~~la~ 281 (357)
T 3d8b_A 204 KTEFLVQLDGATTSSEDRILVVGATNRPQEIDE-AARRRLVKRLYIPLPE-ASARKQIVINLMSKEQCCLSEEEIEQIVQ 281 (357)
T ss_dssp HHHHHHHHHC----CCCCEEEEEEESCGGGBCH-HHHTTCCEEEECCCCC-HHHHHHHHHHHHHTSCBCCCHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCCEEEEEecCChhhCCH-HHHhhCceEEEeCCcC-HHHHHHHHHHHHhhcCCCccHHHHHHHHH
Confidence 34555555542 233468999999987654432 3445788788887764 4666555542 22 266666666555
Q ss_pred HH
Q psy16109 77 YL 78 (129)
Q Consensus 77 ~l 78 (129)
..
T Consensus 282 ~t 283 (357)
T 3d8b_A 282 QS 283 (357)
T ss_dssp HT
T ss_pred Hc
Confidence 43
No 12
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.82 E-value=5.5 Score=33.48 Aligned_cols=56 Identities=13% Similarity=0.193 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCch--hcccceecCCCCCHHHHHHHHH
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILS--KFSAVLHVPNLSTPEHLLNVIE 61 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~--~F~~~i~VP~l~~~~el~~Vl~ 61 (129)
+..||..+--.... .+.+|||||+.++.|+.- +.. .|+..|+||.-+ .++-..+++
T Consensus 305 l~~lL~~lDg~~~~-~~vivI~ATNrp~~LDpA-llRpGRfD~~I~i~lPd-~~~R~~Il~ 362 (437)
T 4b4t_L 305 LMELLTQMDGFDNL-GQTKIIMATNRPDTLDPA-LLRPGRLDRKVEIPLPN-EAGRLEIFK 362 (437)
T ss_dssp HHHHHHHHHSSSCT-TSSEEEEEESSTTSSCTT-TTSTTSEEEEECCCCCC-HHHHHHHHH
T ss_pred HHHHHHHhhcccCC-CCeEEEEecCCchhhCHH-HhCCCccceeeecCCcC-HHHHHHHHH
Confidence 33455555443333 357889999988877653 333 499999998875 456555554
No 13
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=78.16 E-value=5.7 Score=29.86 Aligned_cols=71 Identities=13% Similarity=0.241 Sum_probs=42.0
Q ss_pred HHHHHhcCCCCC--CCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHh----cC-CCCHHHHHHHHHH
Q psy16109 5 ALRVLLKKEPPR--NKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE----SD-VFSKKQVQEIERY 77 (129)
Q Consensus 5 aLlVLlkk~PPk--GrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~----~~-~F~~~e~~~i~~~ 77 (129)
.|+..+...|.. |.+.+|||||+.++-+.. .+.+.|+..+.+|..+ .++...+++. .+ .+++.+++.+.+.
T Consensus 143 ~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~-~l~~R~~~~i~~~~p~-~~~r~~il~~~~~~~~~~~~~~~~~~la~~ 220 (297)
T 3b9p_A 143 EFLVEFDGLPGNPDGDRIVVLAATNRPQELDE-AALRRFTKRVYVSLPD-EQTRELLLNRLLQKQGSPLDTEALRRLAKI 220 (297)
T ss_dssp HHHHHHHHCC------CEEEEEEESCGGGBCH-HHHHHCCEEEECCCCC-HHHHHHHHHHHHGGGSCCSCHHHHHHHHHH
T ss_pred HHHHHHhcccccCCCCcEEEEeecCChhhCCH-HHHhhCCeEEEeCCcC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 456666655543 568999999997653322 2334688888887664 5676666653 22 3677666665543
No 14
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=78.12 E-value=5.2 Score=31.89 Aligned_cols=72 Identities=15% Similarity=0.270 Sum_probs=42.1
Q ss_pred HHHHHhcC-CCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHH
Q psy16109 5 ALRVLLKK-EPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEES-----DVFSKKQVQEIERYL 78 (129)
Q Consensus 5 aLlVLlkk-~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~-----~~F~~~e~~~i~~~l 78 (129)
.|+..+.. ....+.+.+|||||..++-+. -.+.+.|+..+.+|..+ .++...+++.. ..|++.++..+....
T Consensus 237 ~ll~~l~~~~~~~~~~v~vI~atn~~~~l~-~~l~~R~~~~i~i~~p~-~~~r~~il~~~~~~~~~~l~~~~~~~la~~~ 314 (389)
T 3vfd_A 237 EFLIEFDGVQSAGDDRVLVMGATNRPQELD-EAVLRRFIKRVYVSLPN-EETRLLLLKNLLCKQGSPLTQKELAQLARMT 314 (389)
T ss_dssp HHHHHHHHHC-----CEEEEEEESCGGGCC-HHHHTTCCEEEECCCCC-HHHHHHHHHHHHTTSCCCSCHHHHHHHHHHT
T ss_pred HHHHHhhcccccCCCCEEEEEecCCchhcC-HHHHcCcceEEEcCCcC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc
Confidence 44444433 222346899999998766442 24556788788887764 57777776632 236777666655543
No 15
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=77.61 E-value=3.6 Score=30.73 Aligned_cols=79 Identities=14% Similarity=0.274 Sum_probs=45.4
Q ss_pred eEEEEecC----CcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHh---------------cC---CCCHHHHHHHHH
Q psy16109 19 KLLVLCTT----SCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE---------------SD---VFSKKQVQEIER 76 (129)
Q Consensus 19 rLLViaTT----S~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~---------------~~---~F~~~e~~~i~~ 76 (129)
++.+|+|+ ..+.-+.. .+.+.|+..+++|.++ .+++..+++. .+ .|+++.++.+.+
T Consensus 168 ~~~~i~~~~~~~~~~~~l~~-~l~~R~~~~i~~~~~~-~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 245 (310)
T 1ofh_A 168 HILFIASGAFQVARPSDLIP-ELQGRLPIRVELTALS-AADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAE 245 (310)
T ss_dssp TCEEEEEECCSSSCGGGSCH-HHHHTCCEEEECCCCC-HHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHH
T ss_pred cEEEEEcCCcccCCcccCCH-HHHhhCCceEEcCCcC-HHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHH
Confidence 56666663 33332211 3557788889999997 5899999883 23 266666665554
Q ss_pred HHhhC-CCcccccHHHHHHHHHHH
Q psy16109 77 YLHQH-KARVFVGIRKLLGLIDMA 99 (129)
Q Consensus 77 ~l~~~-~~~~~IgIKkLL~~ie~A 99 (129)
.-... .....-++..+..+++.+
T Consensus 246 ~~~~~~~~~~~g~~R~l~~~l~~~ 269 (310)
T 1ofh_A 246 AAFRVNEKTENIGARRLHTVMERL 269 (310)
T ss_dssp HHHHHHHHSCCCTTHHHHHHHHHH
T ss_pred HhhhhcccccccCcHHHHHHHHHH
Confidence 33100 000023566667666654
No 16
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.39 E-value=3.5 Score=34.56 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=29.8
Q ss_pred CeEEEEecCCcHHHHHhCCC-chhcccceecCCCCCHHHHHHHHH
Q psy16109 18 KKLLVLCTTSCREVLEDLKI-LSKFSAVLHVPNLSTPEHLLNVIE 61 (129)
Q Consensus 18 rrLLViaTTS~~~vL~~lgl-~~~F~~~i~VP~l~~~~el~~Vl~ 61 (129)
...+|||||+.++.|+.-=+ -..|+..|++|.+.+.++-..+++
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~ 354 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFG 354 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHH
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHH
Confidence 35889999987665433211 137999999998877666555554
No 17
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=73.03 E-value=19 Score=24.84 Aligned_cols=70 Identities=23% Similarity=0.316 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHh----cC-CCCHHHHHHHHHH
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE----SD-VFSKKQVQEIERY 77 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~----~~-~F~~~e~~~i~~~ 77 (129)
+++|+-++.+.|+ +..+|++|++...+... +.+.| ..+++|.++ .+++...++. .+ .++++.++.+.+.
T Consensus 143 ~~~l~~~l~~~~~--~~~~i~~t~~~~~~~~~--l~~r~-~~i~l~~l~-~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~ 216 (250)
T 1njg_A 143 FNALLKTLEEPPE--HVKFLLATTDPQKLPVT--ILSRC-LQFHLKALD-VEQIRHQLEHILNEEHIAHEPRALQLLARA 216 (250)
T ss_dssp HHHHHHHHHSCCT--TEEEEEEESCGGGSCHH--HHTTS-EEEECCCCC-HHHHHHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC--ceEEEEEeCChHhCCHH--HHHHh-hhccCCCCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4566777766543 33444444433222111 12222 478999996 4888888763 22 4677777666654
Q ss_pred H
Q psy16109 78 L 78 (129)
Q Consensus 78 l 78 (129)
.
T Consensus 217 ~ 217 (250)
T 1njg_A 217 A 217 (250)
T ss_dssp H
T ss_pred c
Confidence 4
No 18
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.63 E-value=4.8 Score=33.83 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=36.1
Q ss_pred HHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCc-hhcccceecCCCCCHHHHHHHHH
Q psy16109 5 ALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKIL-SKFSAVLHVPNLSTPEHLLNVIE 61 (129)
Q Consensus 5 aLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~-~~F~~~i~VP~l~~~~el~~Vl~ 61 (129)
.||..+-.-... .+.+|||||..++.|+.-=+- ..|+..|+||..+ .++-..+++
T Consensus 307 ~lL~~ldg~~~~-~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd-~~~R~~Il~ 362 (434)
T 4b4t_M 307 ELLNQLDGFSSD-DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPS-EDSRAQILQ 362 (434)
T ss_dssp HHHHHHTTSCSS-CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCC-HHHHHHHHH
T ss_pred HHHHHhhccCCC-CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcC-HHHHHHHHH
Confidence 344445443332 468999999988876543332 3799999999875 466555554
No 19
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=71.60 E-value=9.1 Score=29.23 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=37.0
Q ss_pred CCeEEEEecCCcHHHHHhC--CCchhccc-ceecCCCCCHHHHHHHHHhc-------CCCCHHHHHHHHHHH
Q psy16109 17 NKKLLVLCTTSCREVLEDL--KILSKFSA-VLHVPNLSTPEHLLNVIEES-------DVFSKKQVQEIERYL 78 (129)
Q Consensus 17 GrrLLViaTTS~~~vL~~l--gl~~~F~~-~i~VP~l~~~~el~~Vl~~~-------~~F~~~e~~~i~~~l 78 (129)
+.++.+|+||+.....+.+ .+.+.|.. .+++|.++ .+++..+++.. ..|+++.++.+.+..
T Consensus 165 ~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~-~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (387)
T 2v1u_A 165 RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYT-APQLRDILETRAEEAFNPGVLDPDVVPLCAALA 235 (387)
T ss_dssp ---CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCC-HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHH
T ss_pred CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCC-HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 3467777777765433322 23345665 89999997 58999888742 246666666655544
No 20
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.74 E-value=4.1 Score=34.84 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=30.5
Q ss_pred CeEEEEecCCcHHHHHhCCCc--hhcccceecCCCCCHHHHHHHHH
Q psy16109 18 KKLLVLCTTSCREVLEDLKIL--SKFSAVLHVPNLSTPEHLLNVIE 61 (129)
Q Consensus 18 rrLLViaTTS~~~vL~~lgl~--~~F~~~i~VP~l~~~~el~~Vl~ 61 (129)
.+.+|||||+.++.|+.- +. ..|+..|+||.-+ .++-..+++
T Consensus 347 ~~ViVIaATNrpd~LDpA-LlRpGRFD~~I~i~lPd-~~~R~~Ilk 390 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPA-LLRPGRIDRKVEFSLPD-LEGRANIFR 390 (467)
T ss_dssp TTEEEEEECSCTTSBCHH-HHSTTTCCEEECCCCCC-HHHHHHHHH
T ss_pred CcEEEEeCCCCcccCChh-hhccccccEEEEeCCcC-HHHHHHHHH
Confidence 468999999987766553 33 3799999999875 466566654
No 21
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.38 E-value=3.4 Score=34.57 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=35.1
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCC-chhcccceecCCCCCHHHHHHHHH
Q psy16109 4 QALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKI-LSKFSAVLHVPNLSTPEHLLNVIE 61 (129)
Q Consensus 4 QaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl-~~~F~~~i~VP~l~~~~el~~Vl~ 61 (129)
-.||..+-.-.. ....+|||||..++.|+.-=+ -..|+..|+||.-+ .++-..+++
T Consensus 273 ~~lL~~lDg~~~-~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd-~~~R~~Il~ 329 (405)
T 4b4t_J 273 LELLNQLDGFET-SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPS-VAARAEILR 329 (405)
T ss_dssp HHHHHHHHTTTC-CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCC-HHHHHHHHH
T ss_pred HHHHHhhhccCC-CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcC-HHHHHHHHH
Confidence 344444444332 357899999998776544222 14799999998875 456555554
No 22
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.30 E-value=5.2 Score=33.94 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=31.3
Q ss_pred CeEEEEecCCcHHHHHhCCCc-hhcccceecCCCCCHHHHHHHHH
Q psy16109 18 KKLLVLCTTSCREVLEDLKIL-SKFSAVLHVPNLSTPEHLLNVIE 61 (129)
Q Consensus 18 rrLLViaTTS~~~vL~~lgl~-~~F~~~i~VP~l~~~~el~~Vl~ 61 (129)
...+|||||+.++.|+.-=+= ..|+..|+||.-. .++-..+++
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd-~~~R~~Il~ 363 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPD-LSTKKKILG 363 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCC-HHHHHHHHH
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcC-HHHHHHHHH
Confidence 468899999999877665332 4899999998775 456555554
No 23
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=64.34 E-value=25 Score=22.49 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCcccccHHHHHHHHHHHhcccchhhHHHHHHHHHhcCc
Q psy16109 53 PEHLLNVIEESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120 (129)
Q Consensus 53 ~~el~~Vl~~~~~F~~~e~~~i~~~l~~~~~~~~IgIKkLL~~ie~A~~~~~~~~~~~fl~~l~~~g~ 120 (129)
++.+..-|-+.++|++++.+.|... .+..=...+||..+ .. ....-+..|++.|.+.|+
T Consensus 24 v~~lld~L~~~~vlt~~~~e~I~~~-----~t~~~kar~Lld~l---~~-kG~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEEKVRNE-----PTQQQRAAMLIKMI---LK-KDNDSYVSFYNALLHEGY 82 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTS-----SSHHHHHHHHHHHH---TT-SCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHcC-----CChHHHHHHHHHHH---HH-cCHHHHHHHHHHHHHcCH
Confidence 6778888888999999999888752 11222344455554 32 123458999999999886
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=63.79 E-value=6.7 Score=29.21 Aligned_cols=43 Identities=19% Similarity=0.427 Sum_probs=30.0
Q ss_pred CeEEEEecCCcHHHHHhCCCc--hhcccceecCCCCCHHHHHHHHHh
Q psy16109 18 KKLLVLCTTSCREVLEDLKIL--SKFSAVLHVPNLSTPEHLLNVIEE 62 (129)
Q Consensus 18 rrLLViaTTS~~~vL~~lgl~--~~F~~~i~VP~l~~~~el~~Vl~~ 62 (129)
.+..|||||..++.+.. .+. +.|+..+++|..+ .++...+++.
T Consensus 155 ~~~~vI~ttn~~~~l~~-~l~~~~Rf~~~i~~~~p~-~~~r~~il~~ 199 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDP-AILRPGRFDRIIEVPAPD-EKGRLEILKI 199 (285)
T ss_dssp SSEEEEEECSCGGGBCH-HHHSTTSEEEEEECCCCC-HHHHHHHHHH
T ss_pred CCEEEEEeCCCchhcCH-HHcCCCcCCeEEEECCCC-HHHHHHHHHH
Confidence 46888999986644321 122 2788899999886 5788888764
No 25
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=61.99 E-value=11 Score=28.94 Aligned_cols=56 Identities=9% Similarity=0.326 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCch--hcccceecCCCCCHHHHHHHHH
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILS--KFSAVLHVPNLSTPEHLLNVIE 61 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~--~F~~~i~VP~l~~~~el~~Vl~ 61 (129)
+..|+..+....++ .+.+|||||+.++.++.- +.. .|+..+++|..+ .++...+++
T Consensus 139 ~~~lL~~l~~~~~~-~~v~vi~atn~~~~ld~a-l~r~gRf~~~i~i~~p~-~~~r~~il~ 196 (301)
T 3cf0_A 139 INQILTEMDGMSTK-KNVFIIGATNRPDIIDPA-ILRPGRLDQLIYIPLPD-EKSRVAILK 196 (301)
T ss_dssp HHHHHHHHHSSCTT-SSEEEEEEESCGGGSCGG-GGSTTSSCEEEECCCCC-HHHHHHHHH
T ss_pred HHHHHHHhhcccCC-CCEEEEEecCCccccChH-HhcCCccceEEecCCcC-HHHHHHHHH
Confidence 45566666543332 468999999888655432 333 788899998875 466666665
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=61.78 E-value=1.4 Score=32.79 Aligned_cols=50 Identities=16% Similarity=0.308 Sum_probs=31.0
Q ss_pred hcCCCCCCCeEEEEecCCcHHHHHhCCCch--hcccceecCCCCCHHHHHHHHH
Q psy16109 10 LKKEPPRNKKLLVLCTTSCREVLEDLKILS--KFSAVLHVPNLSTPEHLLNVIE 61 (129)
Q Consensus 10 lkk~PPkGrrLLViaTTS~~~vL~~lgl~~--~F~~~i~VP~l~~~~el~~Vl~ 61 (129)
+......+.+.+|||||+.++.++. .+.. .|+..+++|..+. ++...+++
T Consensus 142 l~~~~~~~~~v~vi~ttn~~~~ld~-~l~r~~Rf~~~i~i~~p~~-~~r~~il~ 193 (268)
T 2r62_A 142 MDGFGSENAPVIVLAATNRPEILDP-ALMRPGRFDRQVLVDKPDF-NGRVEILK 193 (268)
T ss_dssp TTCSSCSCSCCEEEECBSCCTTSCG-GGGSSSSSCCCCBCCCCCT-TTHHHHHH
T ss_pred hhCcccCCCCEEEEEecCCchhcCH-hHcCCCCCCeEEEecCcCH-HHHHHHHH
Confidence 3333444567899999987754432 2333 6877777777654 55666665
No 27
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=61.57 E-value=17 Score=26.40 Aligned_cols=42 Identities=12% Similarity=0.285 Sum_probs=30.2
Q ss_pred CeEEEEecCCcHHHHHhCCCch--hcccceecCCCCCHHHHHHHHH
Q psy16109 18 KKLLVLCTTSCREVLEDLKILS--KFSAVLHVPNLSTPEHLLNVIE 61 (129)
Q Consensus 18 rrLLViaTTS~~~vL~~lgl~~--~F~~~i~VP~l~~~~el~~Vl~ 61 (129)
.+.+|||||+.++.+. -.+.. .|+..+++|..+ .++...+++
T Consensus 144 ~~~~vi~~tn~~~~ld-~~l~~~~R~~~~i~i~~p~-~~~r~~il~ 187 (262)
T 2qz4_A 144 DHVIVLASTNRADILD-GALMRPGRLDRHVFIDLPT-LQERREIFE 187 (262)
T ss_dssp CCEEEEEEESCGGGGG-SGGGSTTSCCEEEECCSCC-HHHHHHHHH
T ss_pred CCEEEEecCCChhhcC-HHHhcCCcCCeEEEeCCcC-HHHHHHHHH
Confidence 4788889998776554 33444 788899988775 577777765
No 28
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=60.69 E-value=37 Score=23.12 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCcHH-HHHhCCCchhcccceecCCCCCHHHHHHHHHhc----C-CCCHHHHHHHHH
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTSCRE-VLEDLKILSKFSAVLHVPNLSTPEHLLNVIEES----D-VFSKKQVQEIER 76 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS~~~-vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~----~-~F~~~e~~~i~~ 76 (129)
+++|+-++...++ + ..+|+||+.+. +.. .+.+.|. .+++|.++ .+++...+... + .++++.++.+.+
T Consensus 119 ~~~l~~~l~~~~~--~-~~~i~~~~~~~~~~~--~l~~r~~-~i~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 191 (226)
T 2chg_A 119 QAALRRTMEMYSK--S-CRFILSCNYVSRIIE--PIQSRCA-VFRFKPVP-KEAMKKRLLEICEKEGVKITEDGLEALIY 191 (226)
T ss_dssp HHHHHHHHHHTTT--T-EEEEEEESCGGGSCH--HHHTTSE-EEECCCCC-HHHHHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--C-CeEEEEeCChhhcCH--HHHHhCc-eeecCCCC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4566667766443 2 33444444432 211 1334465 88999997 57888887742 2 367776666664
Q ss_pred HHhhCCCcccccHHHHHHHHHHHh
Q psy16109 77 YLHQHKARVFVGIRKLLGLIDMAR 100 (129)
Q Consensus 77 ~l~~~~~~~~IgIKkLL~~ie~A~ 100 (129)
.- +| -+..++..++.+.
T Consensus 192 ~~--~g-----~~r~l~~~l~~~~ 208 (226)
T 2chg_A 192 IS--GG-----DFRKAINALQGAA 208 (226)
T ss_dssp HH--TT-----CHHHHHHHHHHHH
T ss_pred Hc--CC-----CHHHHHHHHHHHH
Confidence 33 22 2344555555443
No 29
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=59.57 E-value=8 Score=27.36 Aligned_cols=88 Identities=9% Similarity=0.201 Sum_probs=48.6
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCcHHHHHhC--CCchhcc--cceecCCCCCHHHHHHHHHh----cC-CCCHHHHHHH
Q psy16109 4 QALRVLLKKEPPRNKKLLVLCTTSCREVLEDL--KILSKFS--AVLHVPNLSTPEHLLNVIEE----SD-VFSKKQVQEI 74 (129)
Q Consensus 4 QaLlVLlkk~PPkGrrLLViaTTS~~~vL~~l--gl~~~F~--~~i~VP~l~~~~el~~Vl~~----~~-~F~~~e~~~i 74 (129)
+.|+-++......|+.-+|++|+..++-+... .+.+.|. ..+++|.++. ++...+++. .+ .++++.++.+
T Consensus 124 ~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~l 202 (242)
T 3bos_A 124 EAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMD-DEKLAALQRRAAMRGLQLPEDVGRFL 202 (242)
T ss_dssp HHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCG-GGHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCH-HHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45566666554445433666666544322221 2334454 7889999875 788777764 23 3677766666
Q ss_pred HHHHhhCCCcccccHHHHHHHHHHH
Q psy16109 75 ERYLHQHKARVFVGIRKLLGLIDMA 99 (129)
Q Consensus 75 ~~~l~~~~~~~~IgIKkLL~~ie~A 99 (129)
.+.. .+ -+..+..+++.|
T Consensus 203 ~~~~--~g-----~~r~l~~~l~~~ 220 (242)
T 3bos_A 203 LNRM--AR-----DLRTLFDVLDRL 220 (242)
T ss_dssp HHHT--TT-----CHHHHHHHHHHH
T ss_pred HHHc--cC-----CHHHHHHHHHHH
Confidence 6543 22 245555555544
No 30
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=59.50 E-value=49 Score=24.50 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHh----cCC-CCHHHHHHHHHH
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE----SDV-FSKKQVQEIERY 77 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~----~~~-F~~~e~~~i~~~ 77 (129)
..+|+-++..+|+ + -.+|+.|+....++.. +.+.|. .+++|.++ .+++...++. .+. ++++.++.+.+.
T Consensus 127 ~~~L~~~le~~~~-~-~~~i~~~~~~~~l~~~--l~sr~~-~~~~~~l~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 200 (327)
T 1iqp_A 127 QQALRRTMEMFSS-N-VRFILSCNYSSKIIEP--IQSRCA-IFRFRPLR-DEDIAKRLRYIAENEGLELTEEGLQAILYI 200 (327)
T ss_dssp HHHHHHHHHHTTT-T-EEEEEEESCGGGSCHH--HHHTEE-EEECCCCC-HHHHHHHHHHHHHTTTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-C-CeEEEEeCCccccCHH--HHhhCc-EEEecCCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3566667766544 3 3344444443222221 223344 68999996 5888887763 233 677666655543
No 31
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=57.25 E-value=34 Score=26.57 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=41.8
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16109 4 QALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIER 76 (129)
Q Consensus 4 QaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~~~F~~~e~~~i~~ 76 (129)
.+|+-.+..+|+ +-.+|+.|++...++..+ .+.+ ..+++|.++ .+++...+++...++++.++.+.+
T Consensus 126 naLLk~lEep~~--~~~~Il~t~~~~~l~~ti--~SRc-~~~~~~~~~-~~~~~~~L~~~~~~~~~~~~~l~~ 192 (334)
T 1a5t_A 126 NALLKTLEEPPA--ETWFFLATREPERLLATL--RSRC-RLHYLAPPP-EQYAVTWLSREVTMSQDALLAALR 192 (334)
T ss_dssp HHHHHHHTSCCT--TEEEEEEESCGGGSCHHH--HTTS-EEEECCCCC-HHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHhcCCCC--CeEEEEEeCChHhCcHHH--hhcc-eeeeCCCCC-HHHHHHHHHHhcCCCHHHHHHHHH
Confidence 456666665444 566677666533233221 1122 368888886 589999999877778776665554
No 32
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=55.19 E-value=14 Score=33.50 Aligned_cols=57 Identities=12% Similarity=0.250 Sum_probs=37.8
Q ss_pred hHHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCch--hcccceecCCCCCHHHHHHHHH
Q psy16109 2 TLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILS--KFSAVLHVPNLSTPEHLLNVIE 61 (129)
Q Consensus 2 ILQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~--~F~~~i~VP~l~~~~el~~Vl~ 61 (129)
++..|+.++..-... .+.+|||||+.++.|+.- +.. .|+..|++|.-. .++=..+++
T Consensus 324 iv~~LL~~mdg~~~~-~~V~VIaaTN~~d~LD~A-LrR~GRFd~~I~i~~Pd-~~~R~~IL~ 382 (806)
T 3cf2_A 324 IVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDPA-LRRFGRFDREVDIGIPD-ATGRLEILQ 382 (806)
T ss_dssp HHHHHHTHHHHCCGG-GCEEEEEECSSTTTSCTT-TTSTTSSCEEEECCCCC-HHHHHHHHH
T ss_pred HHHHHHHHHhccccc-CCEEEEEecCChhhcCHH-HhCCcccceEEecCCCC-HHHHHHHHH
Confidence 455666666654333 368999999988776543 333 799999998775 345555554
No 33
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=53.73 E-value=13 Score=28.27 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=26.8
Q ss_pred eEEEEecCCcHH-HHHhCCCchhcccceecCCCCCHHHHHHHHH
Q psy16109 19 KLLVLCTTSCRE-VLEDLKILSKFSAVLHVPNLSTPEHLLNVIE 61 (129)
Q Consensus 19 rLLViaTTS~~~-vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~ 61 (129)
+..|||||...+ -+. -.+.+-|+..+++|.++..++-..+++
T Consensus 187 ~~~li~~~n~~~~~l~-~~L~~R~~~~~~l~~~~~~~~~~~il~ 229 (350)
T 1g8p_A 187 RFVLVGSGNPEEGDLR-PQLLDRFGLSVEVLSPRDVETRVEVIR 229 (350)
T ss_dssp CEEEEEEECSCSCCCC-HHHHTTCSEEEECCCCCSHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCCC-HHHHhhcceEEEcCCCCcHHHHHHHHH
Confidence 788888886311 111 134567888899999987655545554
No 34
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=52.66 E-value=44 Score=25.38 Aligned_cols=68 Identities=24% Similarity=0.342 Sum_probs=39.5
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHh----cC-CCCHHHHHHHHH
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE----SD-VFSKKQVQEIER 76 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~----~~-~F~~~e~~~i~~ 76 (129)
..+|+-++..+|+ +-.+|++|+....+... +.+.+ ..++++.++ .+++...++. .+ .++++.++.+.+
T Consensus 136 ~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~--l~sr~-~~i~~~~l~-~~~~~~~l~~~~~~~~~~~~~~a~~~l~~ 208 (373)
T 1jr3_A 136 FNALLKTLEEPPE--HVKFLLATTDPQKLPVT--ILSRC-LQFHLKALD-VEQIRHQLEHILNEEHIAHEPRALQLLAR 208 (373)
T ss_dssp HHHHHHHHHSCCS--SEEEEEEESCGGGSCHH--HHTTS-EEEECCCCC-HHHHHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred HHHHHHHHhcCCC--ceEEEEEeCChHhCcHH--HHhhe-eEeeCCCCC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4567777766544 56677777654433222 12222 578889986 5888888863 23 356655544443
No 35
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=51.41 E-value=5 Score=36.38 Aligned_cols=57 Identities=9% Similarity=0.324 Sum_probs=33.0
Q ss_pred hHHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCc--hhcccceecCCCCCHHHHHHHHH
Q psy16109 2 TLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKIL--SKFSAVLHVPNLSTPEHLLNVIE 61 (129)
Q Consensus 2 ILQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~--~~F~~~i~VP~l~~~~el~~Vl~ 61 (129)
|+-.||..+..-.+. .+.+|||||..++.|+.- +. ..|+..++||.-. .++-..+++
T Consensus 600 v~~~lL~~mdg~~~~-~~V~vi~aTN~p~~lD~A-llRpgRfd~~i~v~lPd-~~~R~~il~ 658 (806)
T 3cf2_A 600 VINQILTEMDGMSTK-KNVFIIGATNRPDIIDPA-ILRPGRLDQLIYIPLPD-EKSRVAILK 658 (806)
T ss_dssp HHHHHHHHHHSSCSS-SSEEEECC-CCSSSSCHH-HHSTTTSCCEEEC------CHHHHTTT
T ss_pred HHHHHHHHHhCCCCC-CCEEEEEeCCCchhCCHh-HcCCCcceEEEEECCcC-HHHHHHHHH
Confidence 456677777765443 469999999988665432 22 2688888887653 244444443
No 36
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=49.02 E-value=77 Score=23.51 Aligned_cols=58 Identities=12% Similarity=0.259 Sum_probs=36.3
Q ss_pred eEEEEecCCcHHHHHhC----C----CchhcccceecCCCCCHHHHHHHHHh----cC-CCCHHHHHHHHHH
Q psy16109 19 KLLVLCTTSCREVLEDL----K----ILSKFSAVLHVPNLSTPEHLLNVIEE----SD-VFSKKQVQEIERY 77 (129)
Q Consensus 19 rLLViaTTS~~~vL~~l----g----l~~~F~~~i~VP~l~~~~el~~Vl~~----~~-~F~~~e~~~i~~~ 77 (129)
++.+|.|+|...++.++ + +...+...++++.++ .+|....+.. .+ .++++....+...
T Consensus 164 ~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~-~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~ 234 (350)
T 2qen_A 164 NLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFD-KDTSVEFLKRGFREVNLDVPENEIEEAVEL 234 (350)
T ss_dssp TEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCC-HHHHHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred CeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45666677766666653 3 223344689999997 5788888764 22 2666666555443
No 37
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=47.22 E-value=85 Score=23.53 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=38.8
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHh----cCC-CCHHHHHHHHHH
Q psy16109 4 QALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE----SDV-FSKKQVQEIERY 77 (129)
Q Consensus 4 QaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~----~~~-F~~~e~~~i~~~ 77 (129)
++|+-++..+|+ +..+|++|+....++.. +.+.|. .++++.++ .+++...++. .+. ++++.++.+.+.
T Consensus 151 ~~Ll~~le~~~~--~~~~il~~~~~~~l~~~--l~sR~~-~i~~~~~~-~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~ 223 (353)
T 1sxj_D 151 SALRRTMETYSG--VTRFCLICNYVTRIIDP--LASQCS-KFRFKALD-ASNAIDRLRFISEQENVKCDDGVLERILDI 223 (353)
T ss_dssp HHHHHHHHHTTT--TEEEEEEESCGGGSCHH--HHHHSE-EEECCCCC-HHHHHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CceEEEEeCchhhCcch--hhccCc-eEEeCCCC-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 567777776654 33455555443222221 223444 78888886 4788777764 333 677766665553
No 38
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=46.45 E-value=13 Score=28.39 Aligned_cols=55 Identities=13% Similarity=0.279 Sum_probs=34.9
Q ss_pred EEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHhc----C-CCCHHHHHHHHH
Q psy16109 20 LLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEES----D-VFSKKQVQEIER 76 (129)
Q Consensus 20 LLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~----~-~F~~~e~~~i~~ 76 (129)
..+||||+....+.. .+.+.|+..+++|.++ .+++..+++.. + .|+++.++.+.+
T Consensus 155 ~~~i~atn~~~~l~~-~L~~R~~~~i~l~~~~-~~e~~~il~~~~~~~~~~~~~~~~~~l~~ 214 (338)
T 3pfi_A 155 FTLIGATTRAGMLSN-PLRDRFGMQFRLEFYK-DSELALILQKAALKLNKTCEEKAALEIAK 214 (338)
T ss_dssp CEEEEEESCGGGSCH-HHHTTCSEEEECCCCC-HHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred eEEEEeCCCccccCH-HHHhhcCEEeeCCCcC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 667777775443221 2556788899999996 58888877642 2 256665555544
No 39
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=46.41 E-value=7 Score=34.92 Aligned_cols=73 Identities=12% Similarity=0.308 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCch--hcccceecCCCCCHHHHHHHHHhc-----------------
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILS--KFSAVLHVPNLSTPEHLLNVIEES----------------- 63 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~--~F~~~i~VP~l~~~~el~~Vl~~~----------------- 63 (129)
+.+|+..+-...+ ..+.+|||||..++.++. -+.. -|+..+.+|..+. ++...+++..
T Consensus 601 ~~~LL~~ld~~~~-~~~v~vI~tTN~~~~ld~-allrpgRf~~~i~~~~p~~-~~r~~Il~~~l~~~~~~~~~~l~~la~ 677 (806)
T 1ypw_A 601 INQILTEMDGMST-KKNVFIIGATNRPDIIDP-AILRPGRLDQLIYIPLPDE-KSRVAILKANLRKSPVAKDVDLEFLAK 677 (806)
T ss_dssp HHHHHTTCC-------CCBCCCCCBSCGGGSC-TTSSGGGTTSCCCCCCCCC-SHHHHHTTTTTSCC----CCCCSCSCG
T ss_pred HHHHHHHHhcccc-cCCeEEEEecCCcccCCH-HHhCccccCceeecCCCCH-HHHHHHHHHHhccCCCCcccCHHHHHH
Confidence 3445444443322 357899999988877765 4444 8999999998865 6777777642
Q ss_pred --CCCCHHHHHHHHHHH
Q psy16109 64 --DVFSKKQVQEIERYL 78 (129)
Q Consensus 64 --~~F~~~e~~~i~~~l 78 (129)
..|+..|+..+++.-
T Consensus 678 ~t~g~sgadi~~l~~~a 694 (806)
T 1ypw_A 678 MTNGFSGADLTEICQRA 694 (806)
T ss_dssp GGSSSCCHHHHHHHHHH
T ss_pred hccccCHHHHHHHHHHH
Confidence 236777777776543
No 40
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=45.78 E-value=64 Score=24.61 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=27.0
Q ss_pred chhcccceecCCCCCHHHHHHHHHh-----cCCCCHHHHHHHHHHH
Q psy16109 38 LSKFSAVLHVPNLSTPEHLLNVIEE-----SDVFSKKQVQEIERYL 78 (129)
Q Consensus 38 ~~~F~~~i~VP~l~~~~el~~Vl~~-----~~~F~~~e~~~i~~~l 78 (129)
.+-|.. +++|.++ .+++..+++. ...|+++.++.+.+.-
T Consensus 248 ~sR~~~-i~~~~~~-~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~ 291 (368)
T 3uk6_A 248 LDRLLI-VSTTPYS-EKDTKQILRIRCEEEDVEMSEDAYTVLTRIG 291 (368)
T ss_dssp HTTEEE-EEECCCC-HHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HhhccE-EEecCCC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 455655 7999995 6899998882 2347877776666544
No 41
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=45.45 E-value=14 Score=29.61 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=30.2
Q ss_pred CCCeEEEEecCCcHHHHH---hCCCchhcc-cceecCCCCCHHHHHHHHH
Q psy16109 16 RNKKLLVLCTTSCREVLE---DLKILSKFS-AVLHVPNLSTPEHLLNVIE 61 (129)
Q Consensus 16 kGrrLLViaTTS~~~vL~---~lgl~~~F~-~~i~VP~l~~~~el~~Vl~ 61 (129)
.+-|+.|||++...+..+ .=-+.+.|. ..++.|..+ .+|+..+++
T Consensus 160 ~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt-~~el~~Il~ 208 (318)
T 3te6_A 160 KNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVD-KNELQQMII 208 (318)
T ss_dssp SSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCC-HHHHHHHHH
T ss_pred cCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCC-HHHHHHHHH
Confidence 346899998886543221 113445665 579999996 589999776
No 42
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=45.12 E-value=21 Score=26.64 Aligned_cols=25 Identities=16% Similarity=0.406 Sum_probs=20.3
Q ss_pred CchhcccceecCCCCCHHHHHHHHHh
Q psy16109 37 ILSKFSAVLHVPNLSTPEHLLNVIEE 62 (129)
Q Consensus 37 l~~~F~~~i~VP~l~~~~el~~Vl~~ 62 (129)
+.+.|+..+..|.++ .+++..+++.
T Consensus 203 l~~R~~~~~~~~p~~-~~~~~~i~~~ 227 (311)
T 4fcw_A 203 FLNRLDEIVVFRPLT-KEQIRQIVEI 227 (311)
T ss_dssp HHTTCSEEEECCCCC-HHHHHHHHHH
T ss_pred HHhcCCeEEEeCCCC-HHHHHHHHHH
Confidence 567888888888887 6899888874
No 43
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=43.94 E-value=48 Score=25.16 Aligned_cols=70 Identities=11% Similarity=0.265 Sum_probs=39.6
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCcHHHHHhC--CCchhcc--cceecCCCCCHHHHHHHHHhc----C-CCCHHHHHHH
Q psy16109 4 QALRVLLKKEPPRNKKLLVLCTTSCREVLEDL--KILSKFS--AVLHVPNLSTPEHLLNVIEES----D-VFSKKQVQEI 74 (129)
Q Consensus 4 QaLlVLlkk~PPkGrrLLViaTTS~~~vL~~l--gl~~~F~--~~i~VP~l~~~~el~~Vl~~~----~-~F~~~e~~~i 74 (129)
+.++-++......|.+ +|++|+..+.-+..+ .+.+.|. ..+++|. +.++...+++.. + .++++.++.+
T Consensus 118 ~~l~~~l~~~~~~~~~-iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~--~~~e~~~il~~~~~~~~~~l~~~~l~~l 194 (324)
T 1l8q_A 118 IEFFHIFNTLYLLEKQ-IILASDRHPQKLDGVSDRLVSRFEGGILVEIEL--DNKTRFKIIKEKLKEFNLELRKEVIDYL 194 (324)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC--CHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCe-EEEEecCChHHHHHhhhHhhhcccCceEEEeCC--CHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 4455555544444554 555666554433322 1345565 5689999 578988887642 3 3666655554
Q ss_pred HH
Q psy16109 75 ER 76 (129)
Q Consensus 75 ~~ 76 (129)
.+
T Consensus 195 ~~ 196 (324)
T 1l8q_A 195 LE 196 (324)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 44
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=42.93 E-value=41 Score=25.56 Aligned_cols=66 Identities=20% Similarity=0.341 Sum_probs=37.9
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHh----cCC-CC-HHHHHHHH
Q psy16109 4 QALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE----SDV-FS-KKQVQEIE 75 (129)
Q Consensus 4 QaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~----~~~-F~-~~e~~~i~ 75 (129)
++|+-++.++|+ + ..+|+.|+....++.. +.+.+ ..++++.++ .+++...++. .+. ++ ++.++.+.
T Consensus 152 ~~L~~~le~~~~-~-~~~Il~t~~~~~l~~~--l~sR~-~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~i~ 223 (354)
T 1sxj_E 152 AALRRTMEKYSK-N-IRLIMVCDSMSPIIAP--IKSQC-LLIRCPAPS-DSEISTILSDVVTNERIQLETKDILKRIA 223 (354)
T ss_dssp HHHHHHHHHSTT-T-EEEEEEESCSCSSCHH--HHTTS-EEEECCCCC-HHHHHHHHHHHHHHHTCEECCSHHHHHHH
T ss_pred HHHHHHHHhhcC-C-CEEEEEeCCHHHHHHH--HHhhc-eEEecCCcC-HHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence 567777777544 3 5566666553333222 22334 578899986 5788888773 232 56 65544444
No 45
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=41.95 E-value=24 Score=26.90 Aligned_cols=44 Identities=16% Similarity=0.408 Sum_probs=33.0
Q ss_pred CCeEEEEecCCcHHHHHhCCCch--hcccceecCCCCCHHHHHHHHHh
Q psy16109 17 NKKLLVLCTTSCREVLEDLKILS--KFSAVLHVPNLSTPEHLLNVIEE 62 (129)
Q Consensus 17 GrrLLViaTTS~~~vL~~lgl~~--~F~~~i~VP~l~~~~el~~Vl~~ 62 (129)
.|..+++|+|..+++|+.- +.. .|+..|+||... .++-..+++.
T Consensus 144 ~~~~i~ia~tn~p~~LD~a-l~r~gRfd~~i~~~~P~-~~~r~~il~~ 189 (274)
T 2x8a_A 144 RQQVFIMAATNRPDIIDPA-ILRPGRLDKTLFVGLPP-PADRLAILKT 189 (274)
T ss_dssp TTCEEEEEEESCGGGSCHH-HHSTTSSCEEEECCSCC-HHHHHHHHHH
T ss_pred cCCEEEEeecCChhhCCHh-hcCcccCCeEEEeCCcC-HHHHHHHHHH
Confidence 3678999999999988543 333 799999998875 4676677653
No 46
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=41.62 E-value=44 Score=21.86 Aligned_cols=60 Identities=20% Similarity=0.308 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhhCCCcccccHHHHHHHHHHHhcccchhhHHHHHHHHHhcCc
Q psy16109 54 EHLLNVIEESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120 (129)
Q Consensus 54 ~el~~Vl~~~~~F~~~e~~~i~~~l~~~~~~~~IgIKkLL~~ie~A~~~~~~~~~~~fl~~l~~~g~ 120 (129)
+++..-|-+.++|++++.+.|... ++.+..=..++||..+.. .+ ..-+..|++.|.+.|.
T Consensus 24 ~~vld~L~~~~vlt~~~~e~I~~~---~~~t~~~~ar~Lld~L~~--rG--~~Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 24 DQLWDVLLSRELFRPHMIEDIQRA---GSGSRRDQARQLIIDLET--RG--SQALPLFISCLEDTGQ 83 (97)
T ss_dssp TTTHHHHHHTTSSCHHHHHHHHTS---TTCCHHHHHHHHHHHHTT--SC--TTHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhc---cCCChHHHHHHHHHHHHH--cC--hHHHHHHHHHHHHcCc
Confidence 346666778899999998877752 011122234455555433 22 2459999999998775
No 47
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.52 E-value=1e+02 Score=22.61 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=38.3
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHh----cC-CCCHHHHHHHHHHH
Q psy16109 4 QALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE----SD-VFSKKQVQEIERYL 78 (129)
Q Consensus 4 QaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~----~~-~F~~~e~~~i~~~l 78 (129)
++|+-++..+|+ +-.+|++|+....++.. +.+.+. .++++.++ .+++...++. .+ .++++.++.+.+..
T Consensus 125 ~~L~~~le~~~~--~~~~il~~~~~~~l~~~--l~sr~~-~i~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 198 (323)
T 1sxj_B 125 QALRRTMELYSN--STRFAFACNQSNKIIEP--LQSQCA-ILRYSKLS-DEDVLKRLLQIIKLEDVKYTNDGLEAIIFTA 198 (323)
T ss_dssp HTTHHHHHHTTT--TEEEEEEESCGGGSCHH--HHTTSE-EEECCCCC-HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHhccCC--CceEEEEeCChhhchhH--HHhhce-EEeecCCC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 455666665443 34455555443322221 122233 78999996 5888888874 23 36777666665543
No 48
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=41.18 E-value=24 Score=27.61 Aligned_cols=52 Identities=23% Similarity=0.301 Sum_probs=36.1
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHhc
Q psy16109 4 QALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEES 63 (129)
Q Consensus 4 QaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~ 63 (129)
++|+-.+..||| +-.+|++|++...++.. +.+. .++.+.++. +++...+++.
T Consensus 100 naLLk~LEep~~--~t~fIl~t~~~~kl~~t--I~SR---~~~f~~l~~-~~i~~~L~~~ 151 (305)
T 2gno_A 100 NAFLKALEEPPE--YAVIVLNTRRWHYLLPT--IKSR---VFRVVVNVP-KEFRDLVKEK 151 (305)
T ss_dssp HHTHHHHHSCCT--TEEEEEEESCGGGSCHH--HHTT---SEEEECCCC-HHHHHHHHHH
T ss_pred HHHHHHHhCCCC--CeEEEEEECChHhChHH--HHce---eEeCCCCCH-HHHHHHHHHH
Confidence 567777776665 67888888765444442 2233 888999986 7998888765
No 49
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=40.04 E-value=1.1e+02 Score=25.70 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=29.3
Q ss_pred CeEEEEecCCcHH---HHHhCCCchhcccceecCCCCCHHHHHHHHHhc
Q psy16109 18 KKLLVLCTTSCRE---VLEDLKILSKFSAVLHVPNLSTPEHLLNVIEES 63 (129)
Q Consensus 18 rrLLViaTTS~~~---vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~ 63 (129)
.+.+|+||...++ ++ -.+.+.|...++||..+..++...++...
T Consensus 149 ~~~iI~ATN~lpe~~~~~--~aLldRF~~~i~v~~p~~~ee~~~IL~~~ 195 (500)
T 3nbx_X 149 MRLLVAASNELPEADSSL--EALYDRMLIRLWLDKVQDKANFRSMLTSQ 195 (500)
T ss_dssp CCEEEEEESSCCCTTCTT--HHHHTTCCEEEECCSCCCHHHHHHHHTCC
T ss_pred hhhhhhccccCCCccccH--HHHHHHHHHHHHHHHhhhhhhHHHHHhcc
Confidence 4566666643222 00 03567888899999999878888888753
No 50
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=39.34 E-value=91 Score=23.80 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCC------cHHHHHhCCCchhcccceecCCCCCHHHHH----HHHHhcCC-CCHHHH
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTS------CREVLEDLKILSKFSAVLHVPNLSTPEHLL----NVIEESDV-FSKKQV 71 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS------~~~vL~~lgl~~~F~~~i~VP~l~~~~el~----~Vl~~~~~-F~~~e~ 71 (129)
..+|+-++..+|| .-.+|++||. ...+.+.+. .-...++...++. +++. ..+++.|. ++++.+
T Consensus 94 ~~aLl~~le~p~~--~~~~il~~~~~~~~~~~~k~~~~i~---sr~~~~~~~~l~~-~~l~~~l~~~~~~~g~~i~~~a~ 167 (343)
T 1jr3_D 94 NEQLLTLTGLLHD--DLLLIVRGNKLSKAQENAAWFTALA---NRSVQVTCQTPEQ-AQLPRWVAARAKQLNLELDDAAN 167 (343)
T ss_dssp HHHHHHHHTTCBT--TEEEEEEESCCCTTTTTSHHHHHHT---TTCEEEEECCCCT-THHHHHHHHHHHHTTCEECHHHH
T ss_pred HHHHHHHHhcCCC--CeEEEEEcCCCChhhHhhHHHHHHH---hCceEEEeeCCCH-HHHHHHHHHHHHHcCCCCCHHHH
Confidence 3577888877655 5666777665 234555421 1123455566654 5666 45555553 455443
Q ss_pred H
Q psy16109 72 Q 72 (129)
Q Consensus 72 ~ 72 (129)
+
T Consensus 168 ~ 168 (343)
T 1jr3_D 168 Q 168 (343)
T ss_dssp H
T ss_pred H
Confidence 3
No 51
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=38.62 E-value=89 Score=22.91 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=35.2
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHh----cC-CCCHHHHHHHH
Q psy16109 4 QALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE----SD-VFSKKQVQEIE 75 (129)
Q Consensus 4 QaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~----~~-~F~~~e~~~i~ 75 (129)
++|+-++..+|+ +-.+|++|+....+... +.+.|. .++++.++ .+++...+.. .+ .++++.++.+.
T Consensus 120 ~~L~~~le~~~~--~~~~i~~~~~~~~l~~~--l~sr~~-~i~~~~~~-~~~~~~~l~~~~~~~~~~i~~~~l~~l~ 190 (319)
T 2chq_A 120 AALRRTMEMYSK--SCRFILSCNYVSRIIEP--IQSRCA-VFRFKPVP-KEAMKKRLLEICEKEGVKITEDGLEALI 190 (319)
T ss_dssp HTTGGGTSSSSS--SEEEEEEESCGGGSCHH--HHTTCE-EEECCCCC-HHHHHHHHHHHHHTTCCCBCHHHHHHHH
T ss_pred HHHHHHHHhcCC--CCeEEEEeCChhhcchH--HHhhCe-EEEecCCC-HHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345555555433 34455555543322222 223344 78899986 5788888763 23 35666555444
No 52
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=38.48 E-value=84 Score=26.00 Aligned_cols=85 Identities=8% Similarity=0.223 Sum_probs=49.4
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHh----cC-CCCHHHHHHHHHH
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE----SD-VFSKKQVQEIERY 77 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~----~~-~F~~~e~~~i~~~ 77 (129)
+++|.-++++. +.++++++++.....+.. ...+...++++.++ .+++..++.. .+ .++++.+..+.+.
T Consensus 168 l~~L~~~l~~~---~~~iIli~~~~~~~~l~~---l~~r~~~i~f~~~~-~~~~~~~L~~i~~~~~~~i~~~~l~~la~~ 240 (516)
T 1sxj_A 168 VGQLAQFCRKT---STPLILICNERNLPKMRP---FDRVCLDIQFRRPD-ANSIKSRLMTIAIREKFKLDPNVIDRLIQT 240 (516)
T ss_dssp HHHHHHHHHHC---SSCEEEEESCTTSSTTGG---GTTTSEEEECCCCC-HHHHHHHHHHHHHHHTCCCCTTHHHHHHHH
T ss_pred HHHHHHHHHhc---CCCEEEEEcCCCCccchh---hHhceEEEEeCCCC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 46777777763 234666665544333333 24455678888886 5787776653 23 3677666665543
Q ss_pred HhhCCCcccccHHHHHHHHHHHhc
Q psy16109 78 LHQHKARVFVGIRKLLGLIDMARQ 101 (129)
Q Consensus 78 l~~~~~~~~IgIKkLL~~ie~A~~ 101 (129)
- +| .+..++.+++.+..
T Consensus 241 s--~G-----diR~~i~~L~~~~~ 257 (516)
T 1sxj_A 241 T--RG-----DIRQVINLLSTIST 257 (516)
T ss_dssp T--TT-----CHHHHHHHHTHHHH
T ss_pred c--CC-----cHHHHHHHHHHHHh
Confidence 2 21 26667777666543
No 53
>4go6_A HCF N-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}
Probab=38.22 E-value=7 Score=23.34 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=15.9
Q ss_pred cCCCCCCCeEEEEecCCcH
Q psy16109 11 KKEPPRNKKLLVLCTTSCR 29 (129)
Q Consensus 11 kk~PPkGrrLLViaTTS~~ 29 (129)
-|||+++|--||=|+|+.-
T Consensus 5 ~kP~~PsrVQLvRAst~sL 23 (45)
T 4go6_A 5 EKPPPPARVQLVRANTNSL 23 (45)
T ss_dssp SCCCCCEEEEEEEECSSCE
T ss_pred ccCCCcceEEEEEeccceE
Confidence 3788889999999999853
No 54
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=38.01 E-value=12 Score=23.60 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCC-cHHHHHhCCCchhcc
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTS-CREVLEDLKILSKFS 42 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS-~~~vL~~lgl~~~F~ 42 (129)
+++|.-+.++--.+|.++.+.+.+. -+.+|+..|+.+.|.
T Consensus 62 l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~ 102 (110)
T 1sbo_A 62 LGTLVVILKDAKINGKEFILSSLKESISRILKLTHLDKIFK 102 (110)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCCHHHHHHHHHTTCGGGSC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhCccceee
Confidence 5677777777666788888777654 478889999988875
No 55
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=37.75 E-value=22 Score=26.08 Aligned_cols=69 Identities=6% Similarity=0.027 Sum_probs=53.8
Q ss_pred HHHHHhCCCchhcccceecCCCCCH-H-----HHHHHHHhcCCCCHHHHHHHHHHHhhCCCcccccHHHHHHHHHHH
Q psy16109 29 REVLEDLKILSKFSAVLHVPNLSTP-E-----HLLNVIEESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMA 99 (129)
Q Consensus 29 ~~vL~~lgl~~~F~~~i~VP~l~~~-~-----el~~Vl~~~~~F~~~e~~~i~~~l~~~~~~~~IgIKkLL~~ie~A 99 (129)
++.|+.=+..++....+.=|++.+. + .+..|++-...|...|+..++++| ......+=+|-+.-..+..
T Consensus 44 r~lL~~g~~~~ALk~aL~~pP~~~~~~~~K~~~~~~Vl~vL~siK~sdI~~~v~~L--~~~~~D~LMKYiYkGm~~~ 118 (152)
T 3dwl_G 44 RSAIQTGNALQGLKTLLSYVPYGNDVQEVRTQYLNAFVDVLSNIRAADIPAFVKEC--STEEIDNIVNFIYRGLANP 118 (152)
T ss_dssp HHHHHHSCCHHHHHHHTSSCCCSCSCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHS--CHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHccHHHHHHHHHHh--CHHHHHHHHHHHHHhccCc
Confidence 6788888999999999999999764 3 455777777778899999999999 5456677788887775554
No 56
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=35.60 E-value=25 Score=22.98 Aligned_cols=33 Identities=9% Similarity=0.053 Sum_probs=20.4
Q ss_pred HHHHHhCCC-chhcccceecCCCCCHHHHHHHHHh
Q psy16109 29 REVLEDLKI-LSKFSAVLHVPNLSTPEHLLNVIEE 62 (129)
Q Consensus 29 ~~vL~~lgl-~~~F~~~i~VP~l~~~~el~~Vl~~ 62 (129)
+++++++|. .+.-+..|++|+|++ .=+.+|++=
T Consensus 27 k~ml~~~~~~~e~~~~~Ipl~~V~~-~iL~kViey 60 (96)
T 2fnj_C 27 KAMLSGPGQFAENETNEVNFREIPS-HVLSKVCMY 60 (96)
T ss_dssp HHHHHCC--------CEEECSSCCH-HHHHHHHHH
T ss_pred HHHHHccCCcccccCCceeCCCCCH-HHHHHHHHH
Confidence 567777665 244446899999975 688888873
No 57
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=34.88 E-value=58 Score=21.78 Aligned_cols=46 Identities=17% Similarity=0.051 Sum_probs=22.1
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCC-C----chhcc-cceecCCCC
Q psy16109 4 QALRVLLKKEPPRNKKLLVLCTTSCREVLEDLK-I----LSKFS-AVLHVPNLS 51 (129)
Q Consensus 4 QaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lg-l----~~~F~-~~i~VP~l~ 51 (129)
+.|+-++...+... -+|.+|+...+-+-.-| + +..|+ ..|+||+|+
T Consensus 94 ~~Ll~~l~~~~~~~--~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lPpLR 145 (145)
T 3n70_A 94 YHLVQLQSQEHRPF--RLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLPLT 145 (145)
T ss_dssp HHHHHHHHSSSCSS--CEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEECCCCC
T ss_pred HHHHHHHhhcCCCE--EEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEeCCCCC
Confidence 45555665444322 24445554554442222 2 22222 269999874
No 58
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.77 E-value=80 Score=19.08 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=40.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhCCCc-ccccHHHHHHHHHHHhcccchhhHHHHHHHHHhcCccc
Q psy16109 56 LLNVIEESDVFSKKQVQEIERYLHQHKAR-VFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCLD 122 (129)
Q Consensus 56 l~~Vl~~~~~F~~~e~~~i~~~l~~~~~~-~~IgIKkLL~~ie~A~~~~~~~~~~~fl~~l~~~g~~~ 122 (129)
+...|++.|.=....+..|++.+. ... -++.++.|...+......-+..++-+-++.|.+.|++.
T Consensus 4 ~~~~l~~~g~~~t~~r~~IL~~l~--~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 4 NNTALKKAGLKVTLPRLKILEVLQ--EPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHT--SGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHH--hCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 345567766433445677888883 222 36888777666532111223457899999999999853
No 59
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=33.36 E-value=30 Score=25.25 Aligned_cols=44 Identities=9% Similarity=0.259 Sum_probs=32.2
Q ss_pred CCeEEEEecCCcHHHHHhCCCc-hhcccceecCCCCCHHHHHHHHH
Q psy16109 17 NKKLLVLCTTSCREVLEDLKIL-SKFSAVLHVPNLSTPEHLLNVIE 61 (129)
Q Consensus 17 GrrLLViaTTS~~~vL~~lgl~-~~F~~~i~VP~l~~~~el~~Vl~ 61 (129)
.+..+++|||..++.++.-=+- ..|+..+++|... .++-..+++
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~-~~~r~~il~ 196 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD-VKGREQILR 196 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCC-HHHHHHHHH
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcC-HHHHHHHHH
Confidence 4678999999999887643222 2699999998875 466666765
No 60
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=32.60 E-value=60 Score=26.40 Aligned_cols=68 Identities=10% Similarity=0.209 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCCCCCeEEEEec---------CC---cHHHHHhCCCchhcccceecCCCCCHHHHHHHHHh-----cCC
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCT---------TS---CREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE-----SDV 65 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaT---------TS---~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~-----~~~ 65 (129)
..+|+-.+-.+|. . ++|+|| |. .++-|-. .+.+-|.. ++.|.++ .+++..+|+. ...
T Consensus 312 ~~aLlk~lEe~~~-~--~~il~tn~~~~~i~~~~~~~~~~~l~~-~i~sR~~~-~~~~~~~-~~e~~~iL~~~~~~~~~~ 385 (456)
T 2c9o_A 312 FTYLHRALESSIA-P--IVIFASNRGNCVIRGTEDITSPHGIPL-DLLDRVMI-IRTMLYT-PQEMKQIIKIRAQTEGIN 385 (456)
T ss_dssp HHHHHHHTTSTTC-C--EEEEEECCSEEECBTTSSCEEETTCCH-HHHTTEEE-EECCCCC-HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhccCC-C--EEEEecCCccccccccccccccccCCh-hHHhhcce-eeCCCCC-HHHHHHHHHHHHHHhCCC
Confidence 3456555555444 2 788898 54 0111111 24455554 5899996 5899999973 224
Q ss_pred CCHHHHHHHHH
Q psy16109 66 FSKKQVQEIER 76 (129)
Q Consensus 66 F~~~e~~~i~~ 76 (129)
|+++.+..+.+
T Consensus 386 ~~~~~~~~i~~ 396 (456)
T 2c9o_A 386 ISEEALNHLGE 396 (456)
T ss_dssp BCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 77776665554
No 61
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=32.51 E-value=33 Score=26.23 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=41.2
Q ss_pred hHHHHHHHhcCC----------CCCCCeEEEEecCCcHHHHHhCCCc--hhcccceecCCCCCHHHHHHHHHhc---CCC
Q psy16109 2 TLQALRVLLKKE----------PPRNKKLLVLCTTSCREVLEDLKIL--SKFSAVLHVPNLSTPEHLLNVIEES---DVF 66 (129)
Q Consensus 2 ILQaLlVLlkk~----------PPkGrrLLViaTTS~~~vL~~lgl~--~~F~~~i~VP~l~~~~el~~Vl~~~---~~F 66 (129)
+..+|+-++-.. .....+.+||+||..++.+..- +. ..|+..+.+| +.++...+++.. ..+
T Consensus 128 v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~a-l~R~~R~d~~i~~P---~~~~r~~Il~~~~~~~~~ 203 (293)
T 3t15_A 128 VNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAP---TREDRIGVCTGIFRTDNV 203 (293)
T ss_dssp HHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CH-HHHHHHEEEEEECC---CHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHH-HhCCCCCceeEeCc---CHHHHHHHHHHhccCCCC
Confidence 346777776411 1234578999999876543321 22 4788888888 456766666532 234
Q ss_pred CHHHHHHHHHHH
Q psy16109 67 SKKQVQEIERYL 78 (129)
Q Consensus 67 ~~~e~~~i~~~l 78 (129)
+.+++.+.....
T Consensus 204 ~~~~l~~~~~~~ 215 (293)
T 3t15_A 204 PAEDVVKIVDNF 215 (293)
T ss_dssp CHHHHHHHHHHS
T ss_pred CHHHHHHHhCCC
Confidence 555555444433
No 62
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=31.83 E-value=1.8e+02 Score=23.68 Aligned_cols=79 Identities=16% Similarity=0.267 Sum_probs=44.9
Q ss_pred eEEEEecCCcHHH---H-HhCCCchhcccceecCCCCCHHHHHHHHHhcC---------CCCHHHHHHHHHHHhhCCCcc
Q psy16109 19 KLLVLCTTSCREV---L-EDLKILSKFSAVLHVPNLSTPEHLLNVIEESD---------VFSKKQVQEIERYLHQHKARV 85 (129)
Q Consensus 19 rLLViaTTS~~~v---L-~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~~---------~F~~~e~~~i~~~l~~~~~~~ 85 (129)
.+.|||+|+..+. + .+=.+.+.|+. +.||..+ .++...+++..- .|+++.+..+...-...-...
T Consensus 291 ~v~vI~at~~~e~~~~~~~~~al~~Rf~~-i~v~~p~-~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~ 368 (468)
T 3pxg_A 291 ELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQPS-VDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDR 368 (468)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCCCC-HHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCS
T ss_pred CEEEEecCCHHHHHHHhhcCHHHHHhCcc-ceeCCCC-HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Confidence 5667777765542 1 22345567885 9999885 689999988421 256666666665443221122
Q ss_pred cccHHHHHHHHHHHh
Q psy16109 86 FVGIRKLLGLIDMAR 100 (129)
Q Consensus 86 ~IgIKkLL~~ie~A~ 100 (129)
..|= +.+.+++.|.
T Consensus 369 ~lp~-~ai~ll~~a~ 382 (468)
T 3pxg_A 369 FLPD-KAIDLIDEAG 382 (468)
T ss_dssp CTTH-HHHHHHHHHH
T ss_pred cCCc-HHHHHHHHHH
Confidence 2332 3455555554
No 63
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=31.67 E-value=44 Score=28.01 Aligned_cols=57 Identities=12% Similarity=0.243 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCch--hcccceecCCCCCHHHHHHHHHh
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILS--KFSAVLHVPNLSTPEHLLNVIEE 62 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~--~F~~~i~VP~l~~~~el~~Vl~~ 62 (129)
+..|+-++.....+ .+.+|||||..++.|.. .+.. .|+..+++|..+ .++...+++.
T Consensus 325 ~~~LL~~ld~~~~~-~~v~vIaaTn~~~~Ld~-al~r~gRf~~~i~i~~P~-~~eR~~IL~~ 383 (489)
T 3hu3_A 325 VSQLLTLMDGLKQR-AHVIVMAATNRPNSIDP-ALRRFGRFDREVDIGIPD-ATGRLEILQI 383 (489)
T ss_dssp HHHHHHHHHHSCTT-SCEEEEEEESCGGGBCG-GGGSTTSSCEEEECCCCC-HHHHHHHHHH
T ss_pred HHHHHHHhhccccC-CceEEEEecCCccccCH-HHhCCCcCceEEEeCCCC-HHHHHHHHHH
Confidence 34566666654443 36888888887754432 2333 688888887764 5777777763
No 64
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=31.62 E-value=26 Score=23.01 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCC-CCCeEEEEecCC-cHHHHHhCCCchhcc
Q psy16109 3 LQALRVLLKKEPP-RNKKLLVLCTTS-CREVLEDLKILSKFS 42 (129)
Q Consensus 3 LQaLlVLlkk~PP-kGrrLLViaTTS-~~~vL~~lgl~~~F~ 42 (129)
+.+|+-+.|+--. +|.++.+.+... -+.+|+..|+.+.|.
T Consensus 66 l~~L~~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~ 107 (121)
T 3t6o_A 66 IELLVRGWKRIKEDQQGVFALCSVSPYCVEVLQVTHIDEVWP 107 (121)
T ss_dssp HHHHHHHHHHHTTSTTCEEEEESCCHHHHHHHTTCSGGGGSC
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHhCccceec
Confidence 5667777777666 788888877654 367777788777774
No 65
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=30.47 E-value=48 Score=20.12 Aligned_cols=29 Identities=17% Similarity=0.365 Sum_probs=21.2
Q ss_pred CCCCCCeEEEEecCCcHH-----HHHhCCCchhc
Q psy16109 13 EPPRNKKLLVLCTTSCRE-----VLEDLKILSKF 41 (129)
Q Consensus 13 ~PPkGrrLLViaTTS~~~-----vL~~lgl~~~F 41 (129)
.++++++++|.|.+..++ .|+++|..+.+
T Consensus 37 ~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~ 70 (85)
T 2jtq_A 37 VPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVE 70 (85)
T ss_dssp CCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEE
T ss_pred CCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEE
Confidence 367889999999886654 67777765543
No 66
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=28.65 E-value=17 Score=23.56 Aligned_cols=40 Identities=18% Similarity=0.300 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCC-cHHHHHhCCCchhcc
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTS-CREVLEDLKILSKFS 42 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS-~~~vL~~lgl~~~F~ 42 (129)
+.+|+.+.|+--.+|.++.+.+.+. -+.+|+..|+.+.|.
T Consensus 60 l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~ 100 (117)
T 4hyl_A 60 LRVLLSLYRHTSNQQGALVLVGVSEEIRDTMEITGFWNFFT 100 (117)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHTCGGGCE
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhCccceee
Confidence 5667777777556788888887664 478888889888885
No 67
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=28.62 E-value=29 Score=22.29 Aligned_cols=39 Identities=8% Similarity=0.049 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCC-cHHHHHhCCCchhc
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTS-CREVLEDLKILSKF 41 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS-~~~vL~~lgl~~~F 41 (129)
+++|.-+.++--.+|.++.+.+.+. -+.+|+..|+.+.|
T Consensus 60 l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~ 99 (117)
T 1h4x_A 60 VGLVLGRMRELEAVAGRTILLNPSPTMRKVFQFSGLGPWM 99 (117)
T ss_dssp HHHHHHHHHHHHTTTCEEEEESCCHHHHHHHHHTTCGGGE
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhCCceEE
Confidence 5677777777666788888777654 47888899988887
No 68
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=28.58 E-value=20 Score=23.96 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=9.3
Q ss_pred HHHHHHHhcCCCCCCCeEEEEe
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLC 24 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLVia 24 (129)
||.+.+-..++||+++||+|=.
T Consensus 14 ~~~~~~~~~~~p~~~~~l~Vgn 35 (111)
T 2jvr_A 14 LVPRGSHMSKLPAKRYRITMKN 35 (111)
T ss_dssp -----------CCCCEEEEEEC
T ss_pred ceecchhcCCCCCCCCEEEEEC
Confidence 6778888889999999999864
No 69
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=27.81 E-value=1.2e+02 Score=23.44 Aligned_cols=23 Identities=9% Similarity=0.446 Sum_probs=18.1
Q ss_pred chhcccceecCCCCCHHHHHHHHH
Q psy16109 38 LSKFSAVLHVPNLSTPEHLLNVIE 61 (129)
Q Consensus 38 ~~~F~~~i~VP~l~~~~el~~Vl~ 61 (129)
.+-|+..+++|.++. +++..+++
T Consensus 261 ~~R~~~~i~~~~l~~-~~l~~i~~ 283 (376)
T 1um8_A 261 IGRLPVLSTLDSISL-EAMVDILQ 283 (376)
T ss_dssp HTTCCEEEECCCCCH-HHHHHHHH
T ss_pred hcCCCceeeccCCCH-HHHHHHHh
Confidence 445667799999975 89999886
No 70
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=27.60 E-value=15 Score=24.50 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=24.3
Q ss_pred eEEEEecCCcHHHHHhCC----CchhcccceecCCCCCHHHHHHH
Q psy16109 19 KLLVLCTTSCREVLEDLK----ILSKFSAVLHVPNLSTPEHLLNV 59 (129)
Q Consensus 19 rLLViaTTS~~~vL~~lg----l~~~F~~~i~VP~l~~~~el~~V 59 (129)
++.+|+||+.....+.+. +.+.|+ .++++..+ .++...+
T Consensus 151 ~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~-~~~~~~i 193 (195)
T 1jbk_A 151 ELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPS-VEDTIAI 193 (195)
T ss_dssp SCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCC-HHHHHTT
T ss_pred CeEEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCC-HHHHHHH
Confidence 566788887766554443 345566 57888875 4666544
No 71
>4i16_A Caspase recruitment domain-containing protein 11; CBM complex, helix bundle, scaffold protein, BCL10 and MALT1 phosphorylation, signaling protein; 1.75A {Mus musculus}
Probab=27.59 E-value=79 Score=21.18 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCcccccHHHHHHHHHHHhcccchhhHHHHHHHHH
Q psy16109 53 PEHLLNVIEESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLE 116 (129)
Q Consensus 53 ~~el~~Vl~~~~~F~~~e~~~i~~~l~~~~~~~~IgIKkLL~~ie~A~~~~~~~~~~~fl~~l~ 116 (129)
++.+..-|.+.++++.+|-++|.++- .....-+|.-.++|+=... ....+..|+++|+
T Consensus 22 p~~l~~yL~q~~VLt~~deEeI~~~~-----~~~t~~~ra~~LLDiL~~r-G~~a~~aFlesL~ 79 (93)
T 4i16_A 22 PAKLTPYLRQCKVIDEQDEDEVLNAP-----MLPSKINRAGRLLDILHTK-GQRGYVVFLESLE 79 (93)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHSSC-----CCSCCTTTTHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhcCc-----cccCHHHHHHHHHHHHHhc-CchHHHHHHHHHH
Confidence 56788889999999999988887532 2233344444555543332 1234899999994
No 72
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=26.60 E-value=85 Score=23.94 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=41.5
Q ss_pred hHHHHHHHhcCCCCCCCeEEEEecCCcH------HHHHh----CCCchhccc----ceecCCCCCHHHHHHHHHhcCCC
Q psy16109 2 TLQALRVLLKKEPPRNKKLLVLCTTSCR------EVLED----LKILSKFSA----VLHVPNLSTPEHLLNVIEESDVF 66 (129)
Q Consensus 2 ILQaLlVLlkk~PPkGrrLLViaTTS~~------~vL~~----lgl~~~F~~----~i~VP~l~~~~el~~Vl~~~~~F 66 (129)
+++|+.-+.++.|. -+|.|+|..... +.+++ +|+.+.+.. ..-.+.++ .+++...+...++|
T Consensus 202 li~a~~~l~~~~~~--~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~-~~~~~~~~~~adv~ 277 (413)
T 3oy2_A 202 YVLAAARFISKYPD--AKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLT-DERVDMMYNACDVI 277 (413)
T ss_dssp HHHHHHHHHHHCTT--CCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCC-HHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHhCCC--cEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCC-HHHHHHHHHhCCEE
Confidence 56777777777654 599999987643 44444 787764222 23334454 58999999988864
No 73
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=26.20 E-value=79 Score=23.46 Aligned_cols=43 Identities=12% Similarity=0.240 Sum_probs=28.6
Q ss_pred eEEEEecCCcHHHHHhC----C----CchhcccceecCCCCCHHHHHHHHHh
Q psy16109 19 KLLVLCTTSCREVLEDL----K----ILSKFSAVLHVPNLSTPEHLLNVIEE 62 (129)
Q Consensus 19 rLLViaTTS~~~vL~~l----g----l~~~F~~~i~VP~l~~~~el~~Vl~~ 62 (129)
++.+|.|+|....+.++ + +...+...++++.++ .+|....+..
T Consensus 170 ~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~-~~e~~~~l~~ 220 (357)
T 2fna_A 170 RIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFS-REEAIEFLRR 220 (357)
T ss_dssp TEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCC-HHHHHHHHHH
T ss_pred CeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCC-HHHHHHHHHH
Confidence 46666777777666653 2 222344689999997 5788887764
No 74
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=25.78 E-value=17 Score=23.21 Aligned_cols=39 Identities=8% Similarity=0.118 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCC-cHHHHHhCCCchhc
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTS-CREVLEDLKILSKF 41 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS-~~~vL~~lgl~~~F 41 (129)
+++|.-+.++--.+|.++.+.+-+. -+.+|+..|+.+.|
T Consensus 61 l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~ 100 (116)
T 1th8_B 61 LGVILGRYKQIKNVGGQMVVCAVSPAVKRLFDMSGLFKII 100 (116)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHHHTGGGTS
T ss_pred HHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHHHhCCceeE
Confidence 5667777777666788887777654 36778888887777
No 75
>2cci_F Cell division control protein 6 homolog; complex (transferase/cell division), protein kinases, cell C recruitment, substrate recognition; HET: TPO ATP; 2.7A {Homo sapiens}
Probab=25.60 E-value=21 Score=19.40 Aligned_cols=7 Identities=14% Similarity=0.572 Sum_probs=5.6
Q ss_pred CCCCeEE
Q psy16109 15 PRNKKLL 21 (129)
Q Consensus 15 PkGrrLL 21 (129)
||||||.
T Consensus 21 ~kgrrLv 27 (30)
T 2cci_F 21 LKGRRLV 27 (30)
T ss_pred cccceee
Confidence 6899885
No 76
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=25.59 E-value=55 Score=21.51 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCc-HHHHHhCCCchhccc
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTSC-REVLEDLKILSKFSA 43 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS~-~~vL~~lgl~~~F~~ 43 (129)
+.+|.-+.++--. |.++.+.+...+ +++|+..|+.+.|..
T Consensus 64 l~~L~~~~~~~~~-g~~l~l~~~~~~v~~~l~~~gl~~~~~~ 104 (118)
T 3ny7_A 64 LDAFQRFVKRLPE-GCELRVCNVEFQPLRTMARAGIQPIPGR 104 (118)
T ss_dssp HHHHHHHHHHCCT-TCEEEEECCCHHHHHHHHHTTCCCBTTT
T ss_pred HHHHHHHHHHHHC-CCEEEEecCCHHHHHHHHHcCChhhcCh
Confidence 5677788888766 888888776653 677888888776653
No 77
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=25.55 E-value=48 Score=21.74 Aligned_cols=31 Identities=10% Similarity=0.232 Sum_probs=21.8
Q ss_pred HHHHHhCCCchhcccceecCCCCCHHHHHHHHHh
Q psy16109 29 REVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE 62 (129)
Q Consensus 29 ~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~ 62 (129)
++++++ |. +.-+..|++|+|++ .=+.+|++=
T Consensus 30 k~ml~~-~~-e~~~~~Iplp~V~~-~iL~kViey 60 (99)
T 1hv2_A 30 KAMIEG-PF-RESKGRIELKQFDS-HILEKAVEY 60 (99)
T ss_dssp HHHHHS-ST-TTCTTEEEETTSCH-HHHHHHHHH
T ss_pred HHHHhc-cc-ccCCCceecCCcCH-HHHHHHHHH
Confidence 456666 54 33445799999975 788888873
No 78
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=25.53 E-value=1.6e+02 Score=20.05 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=31.1
Q ss_pred CCeEEEEecCCc-----HHHHHhCCCchhcccceecCCCCCHHHHHHHHHhcCC
Q psy16109 17 NKKLLVLCTTSC-----REVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDV 65 (129)
Q Consensus 17 GrrLLViaTTS~-----~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~~~ 65 (129)
|.++. |+|.+. ..+++.+|+.+.|+..+-++. .+++-+..+++..+.
T Consensus 84 G~~v~-ivT~~~~~~~~~~~l~~~gl~~~f~~~~~~~~-~k~~~~~~~~~~~~~ 135 (187)
T 2wm8_A 84 GVPGA-AASRTSEIEGANQLLELFDLFRYFVHREIYPG-SKITHFERLQQKTGI 135 (187)
T ss_dssp TCCEE-EEECCSCHHHHHHHHHHTTCTTTEEEEEESSS-CHHHHHHHHHHHHCC
T ss_pred CceEE-EEeCCCChHHHHHHHHHcCcHhhcceeEEEeC-chHHHHHHHHHHcCC
Confidence 65654 455443 457889999999997655543 345667777777663
No 79
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=25.28 E-value=93 Score=23.13 Aligned_cols=56 Identities=21% Similarity=0.372 Sum_probs=35.9
Q ss_pred eEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHhc----C-CCCHHHHHHHHH
Q psy16109 19 KLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEES----D-VFSKKQVQEIER 76 (129)
Q Consensus 19 rLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~----~-~F~~~e~~~i~~ 76 (129)
+..+|+||+....+. -.+.+-|+..+++|.++ .+++..+++.. + .|+++.++.+.+
T Consensus 138 ~~~~i~~t~~~~~~~-~~l~~R~~~~i~l~~~~-~~e~~~~l~~~~~~~~~~~~~~~~~~l~~ 198 (324)
T 1hqc_A 138 RFTLIGATTRPGLIT-APLLSRFGIVEHLEYYT-PEELAQGVMRDARLLGVRITEEAALEIGR 198 (324)
T ss_dssp CCEEEEEESCCSSCS-CSTTTTCSCEEECCCCC-HHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred CEEEEEeCCCcccCC-HHHHhcccEEEecCCCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 356667776543322 23667787889999986 68888888742 2 366665555544
No 80
>2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta motif, structural genomics, PSI, protein structure initiative; 2.00A {Trypanosoma brucei} SCOP: c.51.4.2
Probab=24.53 E-value=37 Score=25.70 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=18.4
Q ss_pred CeEEEEecCC--cHHHHHhC----CCchhcc
Q psy16109 18 KKLLVLCTTS--CREVLEDL----KILSKFS 42 (129)
Q Consensus 18 rrLLViaTTS--~~~vL~~l----gl~~~F~ 42 (129)
.+|+|+|.+| .+++|+++ |+ .|.
T Consensus 9 ~~l~ILAS~SPrR~eLL~~~~~~~gi--~f~ 37 (207)
T 2amh_A 9 IRTMIIGTSSAFRANVLREHFGDRFR--NFV 37 (207)
T ss_dssp CCEEEECCCCHHHHHHHHHHHTTTCS--EEE
T ss_pred CcEEEEccCCHHHHHHHHhhhhcCCC--CEE
Confidence 4556999999 68999999 98 454
No 81
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=24.53 E-value=1.8e+02 Score=20.19 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=45.4
Q ss_pred cCCCCCHHHHHHHHHhcCCC---CHHHH-HHHHHHHhh---CCCcccccHHHHHHHHHHHhcccchhhHHHHHHHHH
Q psy16109 47 VPNLSTPEHLLNVIEESDVF---SKKQV-QEIERYLHQ---HKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLE 116 (129)
Q Consensus 47 VP~l~~~~el~~Vl~~~~~F---~~~e~-~~i~~~l~~---~~~~~~IgIKkLL~~ie~A~~~~~~~~~~~fl~~l~ 116 (129)
+-.+ +..||+.+|++.|.= ...|+ .++.+.+.. .+..-++..+.+-.+|.++++.++........+.|.
T Consensus 37 l~kL-tVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~~~g~~D~~rl~ai~~lI~~~~~g~plP~~~~l~~alr 112 (114)
T 2rnn_A 37 MELL-KVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNALVVGKSDPYRVQAVKFLIERIRKNEPLPVYKDLWNALR 112 (114)
T ss_dssp HTTC-CHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTTCTTCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHH
T ss_pred HHHh-hHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Confidence 4445 468999999988852 34554 444455542 223557888888889999988776555666655554
No 82
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=24.36 E-value=26 Score=26.12 Aligned_cols=45 Identities=9% Similarity=0.234 Sum_probs=31.7
Q ss_pred CCeEEEEecCCcHHHHHhCCCc-hhcccceecCCCCCHHHHHHHHHh
Q psy16109 17 NKKLLVLCTTSCREVLEDLKIL-SKFSAVLHVPNLSTPEHLLNVIEE 62 (129)
Q Consensus 17 GrrLLViaTTS~~~vL~~lgl~-~~F~~~i~VP~l~~~~el~~Vl~~ 62 (129)
.+..+++|||+.+++++.-=+- ..|+..+++|... .++...+++.
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~-~~~r~~il~~ 221 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD-VKGREQILRI 221 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCC-HHHHHHHHHH
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcC-HHHHHHHHHH
Confidence 4678999999998775432222 2588899998775 5777777763
No 83
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=23.92 E-value=1.5e+02 Score=19.84 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=32.6
Q ss_pred CeEEEEecCCc----HHHHHhCCCchhcccceecCCCCCHHHHHHHHHhcCC
Q psy16109 18 KKLLVLCTTSC----REVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDV 65 (129)
Q Consensus 18 rrLLViaTTS~----~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~~~ 65 (129)
.++.|+ |.+. ...++.+|+.+.|+..+..+. .+++-+..+++..|.
T Consensus 123 ~~~~i~-t~~~~~~~~~~l~~~~~~~~f~~~~~~~k-pk~~~~~~~~~~lgi 172 (234)
T 3ddh_A 123 YKLVVA-TKGDLLDQENKLERSGLSPYFDHIEVMSD-KTEKEYLRLLSILQI 172 (234)
T ss_dssp CEEEEE-EESCHHHHHHHHHHHTCGGGCSEEEEESC-CSHHHHHHHHHHHTC
T ss_pred eEEEEE-eCCchHHHHHHHHHhCcHhhhheeeecCC-CCHHHHHHHHHHhCC
Confidence 555554 4443 346899999999998876654 357788888887764
No 84
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=22.22 E-value=1.5e+02 Score=20.11 Aligned_cols=65 Identities=8% Similarity=0.165 Sum_probs=32.0
Q ss_pred HHHHHHHHHh-----cCCCCHHHHHHHHHHHhhCCCcccccHHHHHHHHHHHhc--c-cchhhHHHHHHHHHhcCccc
Q psy16109 53 PEHLLNVIEE-----SDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQ--I-EENYRVMKFLTKLEDEGCLD 122 (129)
Q Consensus 53 ~~el~~Vl~~-----~~~F~~~e~~~i~~~l~~~~~~~~IgIKkLL~~ie~A~~--~-~~~~~~~~fl~~l~~~g~~~ 122 (129)
.+++..+++. .|..+.+|+.+++..+ + ..+.-..+=.++..|-. + +....+..|+..|......|
T Consensus 84 ~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~--g---~~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~~~p~pd 156 (159)
T 3i5g_C 84 ADEFMEAFKTFDREGQGLISSAEIRNVLKML--G---ERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPFPD 156 (159)
T ss_dssp HHHHHHHHHHHCTTSSSEECHHHHHHHHHHS--S---SCCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHHHhcCCCCcCcHHHHHHHHHHh--C---CCCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHHCCCCCC
Confidence 4445555442 2234555666665554 2 13333333344444332 1 22456888888887654443
No 85
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=22.19 E-value=29 Score=23.07 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=20.1
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCc-HHHHHhCCCchhcc
Q psy16109 4 QALRVLLKKEPPRNKKLLVLCTTSC-REVLEDLKILSKFS 42 (129)
Q Consensus 4 QaLlVLlkk~PPkGrrLLViaTTS~-~~vL~~lgl~~~F~ 42 (129)
++|..+.++--..|.+|.+.+-... +.+|+..|+.+.|.
T Consensus 67 ~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~ 106 (130)
T 2kln_A 67 DALDQLRTELLRRGIVFAMARVKQDLRESLRAASLLDKIG 106 (130)
T ss_dssp THHHHHHHHHHTTTEEEEEECCSSHHHHHHHHCTTHHHHC
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcC
Confidence 4444555544445555555554442 45555566555553
No 86
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.01 E-value=92 Score=25.60 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=34.3
Q ss_pred CCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHhc-----------C-CCCHHHHHHHHHH
Q psy16109 17 NKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEES-----------D-VFSKKQVQEIERY 77 (129)
Q Consensus 17 GrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~-----------~-~F~~~e~~~i~~~ 77 (129)
|+-.+|.+||.++..-=.-.+.+.|. .+.++.++ .+++..+++.. + .++++.++.+.+.
T Consensus 133 ~~v~lI~att~n~~~~l~~aL~sR~~-v~~l~~l~-~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~ 203 (447)
T 3pvs_A 133 GTITFIGATTENPSFELNSALLSRAR-VYLLKSLS-TEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL 203 (447)
T ss_dssp TSCEEEEEESSCGGGSSCHHHHTTEE-EEECCCCC-HHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH
T ss_pred CceEEEecCCCCcccccCHHHhCcee-EEeeCCcC-HHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH
Confidence 56677777877654210112334444 56788886 58888888642 1 2666666555544
No 87
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=21.93 E-value=63 Score=21.68 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=25.7
Q ss_pred hhcccceecCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q psy16109 39 SKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIERYLH 79 (129)
Q Consensus 39 ~~F~~~i~VP~l~~~~el~~Vl~~~~~F~~~e~~~i~~~l~ 79 (129)
.-||..+.||.-+ -++..+-|.. +.++.+|-+...+..+
T Consensus 8 akfN~~~~i~~yt-~eeY~~~L~~-~~WTkEETd~Lf~L~~ 46 (93)
T 3hm5_A 8 ARFNKTVQVPVYS-EQEYQLYLHD-DAWTKAETDHLFDLSR 46 (93)
T ss_dssp -------CCCCCC-HHHHHHHTCB-TTBCHHHHHHHHHHHH
T ss_pred hhccccCCCCccC-HHHHHHHcCC-CCCCHHHHHHHHHHHH
Confidence 5699999999886 5899999976 6788888877776664
No 88
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=21.44 E-value=41 Score=22.58 Aligned_cols=40 Identities=8% Similarity=0.053 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCC-cHHHHHhCCCchhcc
Q psy16109 3 LQALRVLLKKEPPRNKKLLVLCTTS-CREVLEDLKILSKFS 42 (129)
Q Consensus 3 LQaLlVLlkk~PPkGrrLLViaTTS-~~~vL~~lgl~~~F~ 42 (129)
+++|..+.++--..|.+|.+.+... -+.+|+..|+.+.|.
T Consensus 82 l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~ 122 (143)
T 3llo_A 82 VKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTSNRFFENPA 122 (143)
T ss_dssp HHHHHHHHHHHHTTTCEEEEESCCHHHHHHHHHTTTTSSGG
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeeccC
Confidence 5667777777666777777776654 356777777776663
No 89
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=21.31 E-value=75 Score=26.39 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=30.2
Q ss_pred EEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHhcCCC
Q psy16109 21 LVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVF 66 (129)
Q Consensus 21 LViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~~~F 66 (129)
-||.||..+.+...++- ....++|+.++ .++-...+... +|
T Consensus 267 ~ilvTTR~~~v~~~~~~---~~~~~~l~~L~-~~ea~~Lf~~~-a~ 307 (549)
T 2a5y_B 267 RCLVTTRDVEISNAASQ---TCEFIEVTSLE-IDECYDFLEAY-GM 307 (549)
T ss_dssp EEEEEESBGGGGGGCCS---CEEEEECCCCC-HHHHHHHHHHT-SC
T ss_pred EEEEEcCCHHHHHHcCC---CCeEEECCCCC-HHHHHHHHHHH-hc
Confidence 37789998888877652 23468999996 57888888876 35
No 90
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=21.10 E-value=2.4e+02 Score=20.35 Aligned_cols=23 Identities=17% Similarity=0.473 Sum_probs=14.9
Q ss_pred Cchhcc-cceecCCCCC-HHHHHHH
Q psy16109 37 ILSKFS-AVLHVPNLST-PEHLLNV 59 (129)
Q Consensus 37 l~~~F~-~~i~VP~l~~-~~el~~V 59 (129)
+.+.|+ ..+++|+++. .+++..+
T Consensus 165 L~~Rl~~~~i~lp~L~~R~~di~~l 189 (265)
T 2bjv_A 165 LLDALAFDVVQLPPLRERESDIMLM 189 (265)
T ss_dssp HHHHHCSEEEECCCGGGCHHHHHHH
T ss_pred HHHhhcCcEEeCCChhhhhHHHHHH
Confidence 455665 4799999975 2455543
No 91
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=20.87 E-value=76 Score=21.93 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=22.0
Q ss_pred HHHHHhCCCchhcccceecCCCCCHHHHHHHHH
Q psy16109 29 REVLEDLKILSKFSAVLHVPNLSTPEHLLNVIE 61 (129)
Q Consensus 29 ~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~ 61 (129)
++++++.| +..|++|+|++ .-+.+|++
T Consensus 28 k~ml~~~~-----~~~Ipl~~V~~-~iL~kVie 54 (141)
T 1fs1_B 28 KTMLEDLG-----MDPVPLPNVNA-AILKKVIQ 54 (141)
T ss_dssp HHHHHHTC-----CSSEECTTCCH-HHHHHHHH
T ss_pred HHHHHhcC-----CCceecCCcCH-HHHHHHHH
Confidence 66777776 66899999975 78999987
No 92
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=20.58 E-value=1.9e+02 Score=19.06 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=36.2
Q ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCcccccHHHHHHHHHHHhcccchhhHHHHHHHHHhcC
Q psy16109 52 TPEHLLNVIEESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEG 119 (129)
Q Consensus 52 ~~~el~~Vl~~~~~F~~~e~~~i~~~l~~~~~~~~IgIKkLL~~ie~A~~~~~~~~~~~fl~~l~~~g 119 (129)
..+.+-.-|-+.++|+++| ..+.... +-+-.|.=.+++.+... ...-+..|+++|.+-+
T Consensus 28 ~V~~lLD~LL~~~VL~~ee-~~I~~~~-------~T~~~kaR~Lld~v~~K-G~~A~~~F~~~L~e~~ 86 (98)
T 2nz7_A 28 NTQCLVDNLLKNDYFSAED-AEIVCAC-------PTQPDKVRKILDLVQSK-GEEVSEFFLYLLQQLA 86 (98)
T ss_dssp CCHHHHHHHHHTTSSCHHH-HHHHHTC-------CSHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCHHH-HHHHccC-------CCcHHHHHHHHHHHHHH-hHHHHHHHHHHHHHhC
Confidence 3466777777889999999 7777532 22333333344444332 1234788999998765
No 93
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=20.47 E-value=37 Score=22.75 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=20.9
Q ss_pred CCCCCeEEEEecCCcHH-----HHHhCCCchhc
Q psy16109 14 PPRNKKLLVLCTTSCRE-----VLEDLKILSKF 41 (129)
Q Consensus 14 PPkGrrLLViaTTS~~~-----vL~~lgl~~~F 41 (129)
+|+++.++|.|.+-.|+ .|+++|..+++
T Consensus 71 ~~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~ 103 (134)
T 1vee_A 71 DPENTTLYILDKFDGNSELVAELVALNGFKSAY 103 (134)
T ss_dssp CGGGCEEEEECSSSTTHHHHHHHHHHHTCSEEE
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHcCCcceE
Confidence 37889999999887655 67777765544
Done!