RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16109
         (129 letters)



>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
           N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
           hamster (Cricetulus griseus) [TaxId: 10029]}
          Length = 246

 Score = 85.0 bits (209), Expect = 7e-22
 Identities = 53/117 (45%), Positives = 81/117 (69%), Gaps = 2/117 (1%)

Query: 3   LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE 62
           LQAL VLLKK PP+ +KLL++ TTS ++VL+++++L+ FS  +HVPN++T E LL  +E 
Sbjct: 127 LQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL 186

Query: 63  SDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEG 119
              F  K+   I + +     +V++GI+KLL LI+M+ Q++  YRV KFL  L +EG
Sbjct: 187 LGNFKDKERTTIAQQV--KGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEG 241


>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 188

 Score = 25.8 bits (56), Expect = 1.6
 Identities = 3/32 (9%), Positives = 15/32 (46%)

Query: 51  STPEHLLNVIEESDVFSKKQVQEIERYLHQHK 82
           +     + +++   +F  +   E++ +  +H+
Sbjct: 157 APVSFAVEILKSLGLFGPEAEAELQIFAAEHR 188


>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 60

 Score = 23.6 bits (51), Expect = 3.1
 Identities = 4/17 (23%), Positives = 11/17 (64%)

Query: 66 FSKKQVQEIERYLHQHK 82
          F+K+ V+ +E +  ++ 
Sbjct: 5  FTKENVRILESWFAKNI 21


>d1jl3a_ c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus subtilis
          [TaxId: 1423]}
          Length = 137

 Score = 24.1 bits (51), Expect = 4.8
 Identities = 8/14 (57%), Positives = 9/14 (64%), Gaps = 1/14 (7%)

Query: 17 NKKLLVLCT-TSCR 29
          NK +  LCT  SCR
Sbjct: 1  NKIIYFLCTGNSCR 14


>d2gnxa2 d.109.3.1 (A:295-440) Hypothetical protein BC048403
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 146

 Score = 24.0 bits (52), Expect = 6.2
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 31 VLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
            E  K + ++ AV+ +P+     H  NVI
Sbjct: 42 YREAPKGVDQYPAVVSLPSDRPVMHWPNVI 71


>d1r6oc1 d.45.1.2 (C:20-106) Adaptor protein ClpS (YljA)
           {Escherichia coli [TaxId: 562]}
          Length = 87

 Score = 23.1 bits (50), Expect = 7.1
 Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 33  EDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIERYLHQH-KARVFVGIR- 90
           + LK  S +  +L   + +  E +++V+++   +  ++  ++   +H   KA   V    
Sbjct: 1   DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAE 60

Query: 91  ----KLLGLIDMARQ 101
               K+  +   AR+
Sbjct: 61  VAETKVAMVNKYARE 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.386 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 466,036
Number of extensions: 20577
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 17
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.4 bits)