BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1611
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 23 QIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYF 82
Q + + +R IR +++ R+ + R ++LG + +EL ++ F+G+I S
Sbjct: 286 QAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSA 345
Query: 83 VYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFA 142
VY AE DE++ + F + DA WW V+++TT+GYGD VP T GKIV S ++
Sbjct: 346 VYFAEADERD-------SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAG 398
Query: 143 ISFFALP 149
+ ALP
Sbjct: 399 VLTIALP 405
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 23 QIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYF 82
Q + + +R IR +++ R+ + R ++LG + +EL ++ F+G+I S
Sbjct: 286 QAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSA 345
Query: 83 VYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFA 142
VY AE DE++ + F + DA WW V+++TT+GYGD VP T GKIV S ++
Sbjct: 346 VYFAEADERD-------SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAG 398
Query: 143 ISFFALP 149
+ ALP
Sbjct: 399 VLTIALP 405
>pdb|4GOW|A Chain A, Crystal Structure Of Ca2+CAM:KV7.4 (KCNQ4) B HELIX COMPLEX
Length = 72
Score = 81.3 bits (199), Expect = 7e-16, Method: Composition-based stats.
Identities = 36/62 (58%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Query: 171 RNAIRAIRKIKYFVARRKFQQARKPYDVRDVIEQYSQGHLNMMVRIKELQRRLDQTLGK- 229
+ IR+IR +K+ VA+RKF++ +PYDV+DVIEQYS GHL+M+ RIK LQ R+DQ +G+
Sbjct: 10 KTVIRSIRILKFLVAKRKFKETLRPYDVKDVIEQYSAGHLDMLGRIKSLQTRVDQIVGRG 69
Query: 230 PG 231
PG
Sbjct: 70 PG 71
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 15/153 (9%)
Query: 5 NLIVVVA----SLIVLTIGSNGQIFAASAIRGI----RFLQILRMLHVDRQGGTWRLLGS 56
N+I +VA + + SN + +R + R ++ILR+ + R ++LG
Sbjct: 275 NIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQ 334
Query: 57 VVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITV 116
+ +EL ++ F+G+I S VY AE DE++ + F + DA WW V+++
Sbjct: 335 TLKASMRELGLLIFFLFIGVILFSSAVYFAEADERD-------SQFPSIPDAFWWAVVSM 387
Query: 117 TTIGYGDAVPQTWMGKIVASCFSVFAISFFALP 149
TT+GYGD VP T GKIV S ++ + ALP
Sbjct: 388 TTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALP 420
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 15/153 (9%)
Query: 5 NLIVVVA----SLIVLTIGSNGQIFAASAIRGI----RFLQILRMLHVDRQGGTWRLLGS 56
N+I +VA + + SN + +R + R ++ILR+ + R ++LG
Sbjct: 275 NIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQ 334
Query: 57 VVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITV 116
+ +EL ++ F+G+I S VY AE DE++ + F + DA WW V+++
Sbjct: 335 TLKASMRELGLLIFFLFIGVILFSSAVYFAEADERD-------SQFPSIPDAFWWAVVSM 387
Query: 117 TTIGYGDAVPQTWMGKIVASCFSVFAISFFALP 149
TT+GYGD VP T GKIV S ++ + ALP
Sbjct: 388 TTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALP 420
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 103 NTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLL 157
N Y DALWW ++T TT+GYGD VP T +G+I+AS +F I+F + I N
Sbjct: 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFF 96
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 73 FLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGK 132
L +++ ++ +Y+ E + N +S + DALWW V+T TT+GYGD VP T +GK
Sbjct: 153 MLTVLYGAFAIYIVEYPDPN-------SSIKSVFDALWWAVVTATTVGYGDVVPATPIGK 205
Query: 133 IVASCFSVFAISFFALPAVRIENLLE 158
++ + IS L + N+ +
Sbjct: 206 VIGIAVMLTGISALTLLIGTVSNMFQ 231
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 74 LGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKI 133
L +++ ++ +Y+ E + N +S + DALWW V+T TT+GYGD VP T +GK+
Sbjct: 142 LTVLYGAFAIYIVEYPDPN-------SSIKSVFDALWWAVVTATTVGYGDVVPATPIGKV 194
Query: 134 VASCFSVFAISFFALPAVRIENLLE 158
+ + IS L + N+ +
Sbjct: 195 IGIAVMLTGISALTLLIGTVSNMFQ 219
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 53.5 bits (127), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVA 135
L+ SY LAE+ G TY ALWW VIT TT+GYGD P T G+ VA
Sbjct: 19 LLAGSYLAVLAER-------GAPGAQLITYPRALWWSVITATTVGYGDLYPVTLWGRCVA 71
Query: 136 SCFSVFAISFFAL 148
V I+ F L
Sbjct: 72 VVVMVAGITSFGL 84
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 41 MLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPN 100
+L R + +LG V+ + LI + + L + Y+ E+D + P
Sbjct: 105 LLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERDIQ-------PE 157
Query: 101 SFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFAL 148
F + A+WW V+T++T GYGD +PQ++ G+++A + I F L
Sbjct: 158 KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGL 205
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNS-FNTYADALWWGVITVTTIGYGDAVPQTWMGKIV 134
L+ SY LAE+ G P + TY ALWW V T TT+GYGD P T G++V
Sbjct: 19 LLAGSYLAVLAER--------GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLV 70
Query: 135 ASCFSVFAISFFAL 148
A V I+ F L
Sbjct: 71 AVVVMVAGITSFGL 84
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNS-FNTYADALWWGVITVTTIGYGDAVPQTWMGKIV 134
L+ SY LAE+ G P + TY ALWW V T TT+GYGD P T G++V
Sbjct: 47 LLAGSYLAVLAER--------GAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRLV 98
Query: 135 ASCFSVFAISFFAL 148
A V I+ F L
Sbjct: 99 AVVVMVAGITSFGL 112
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNS-FNTYADALWWGVITVTTIGYGDAVPQTWMGKIV 134
L+ SY LAE+ G P + TY ALWW V T TT+GYGD P T G++V
Sbjct: 46 LLAGSYLAVLAER--------GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLV 97
Query: 135 ASCFSVFAISFFAL 148
A V I+ F L
Sbjct: 98 AVVVMVAGITSFGL 111
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 52.4 bits (124), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVA 135
L+ SY LAE+ G TY ALWW V T TT+GYGD P T G++VA
Sbjct: 18 LLAGSYLAVLAER-------GAPGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRLVA 70
Query: 136 SCFSVFAISFFAL 148
V I+ F L
Sbjct: 71 VVVMVAGITSFGL 83
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 52.4 bits (124), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVA 135
L+ SY LAE+ G TY ALWW V T TT+GYGD P T G++VA
Sbjct: 19 LLAGSYLAVLAER-------GAPGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRLVA 71
Query: 136 SCFSVFAISFFAL 148
V I+ F L
Sbjct: 72 VVVMVAGITSFGL 84
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVA 135
L+ SY LAE+ G + +Y DALWW V T TT+GYGD P T G+ VA
Sbjct: 63 LLAGSYLAVLAER-------GAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVA 115
Query: 136 SCFSVFAISFFAL 148
V I+ + L
Sbjct: 116 VVVMVAGITSYGL 128
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNS-FNTYADALWWGVITVTTIGYGDAVPQTWMGKIV 134
L+ SY LAE+ G P + TY ALWW V T TT+GYGD P T G+ V
Sbjct: 40 LLAGSYLAVLAER--------GAPGAQLITYPAALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 135 ASCFSVFAISFFAL 148
A V I+ F L
Sbjct: 92 AVVVMVAGITSFGL 105
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 51.6 bits (122), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVA 135
L+ SY LAE+ G TY ALWW V T TT+GYGD P T G+ VA
Sbjct: 19 LLAGSYLAVLAER-------GAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCVA 71
Query: 136 SCFSVFAISFFAL 148
V I+ F L
Sbjct: 72 VVVMVAGITSFGL 84
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNS-FNTYADALWWGVITVTTIGYGDAVPQTWMGKIV 134
L+ SY LAE+ G P + TY ALWW V T TT+GYGD P T G+ V
Sbjct: 40 LLAGSYLAVLAER--------GAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCV 91
Query: 135 ASCFSVFAISFFAL 148
A V I+ F L
Sbjct: 92 AVVVMVAGITSFGL 105
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNS-FNTYADALWWGVITVTTIGYGDAVPQTWMGKIV 134
L+ SY LAE+ G P + TY ALWW V T TT+GYGD P T G++V
Sbjct: 40 LLAGSYLACLAER--------GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLV 91
Query: 135 ASCFSVFAISFFAL 148
A V I+ F L
Sbjct: 92 AVVVMVAGITSFGL 105
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 51.2 bits (121), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVA 135
L+ SY LAE+ G TY ALWW V T TT+GYGD P T G+ VA
Sbjct: 19 LLAGSYLAVLAER-------GAPGAQLITYPRALWWSVSTATTVGYGDLYPVTLWGRCVA 71
Query: 136 SCFSVFAISFFAL 148
V I+ F L
Sbjct: 72 VVVMVAGITSFGL 84
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVA 135
L+ SY LAE+ G TY ALWW V T TT+GYGD P T G+ VA
Sbjct: 18 LLAGSYLAVLAER-------GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVA 70
Query: 136 SCFSVFAISFFAL 148
V I+ F L
Sbjct: 71 VVVMVAGITSFGL 83
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVA 135
L+ SY LAE+ G TY ALWW V T TT+GYGD P T G+ VA
Sbjct: 19 LLAGSYLAVLAER-------GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVA 71
Query: 136 SCFSVFAISFFAL 148
V I+ F L
Sbjct: 72 VVVMVAGITSFGL 84
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVA 135
L+ SY LAE+ G TY ALWW V T TT+GYGD P T G+ VA
Sbjct: 19 LLAGSYLAVLAER-------GAPGAQLITYPRALWWSVQTATTVGYGDLYPVTLWGRCVA 71
Query: 136 SCFSVFAISFFAL 148
V I+ F L
Sbjct: 72 VVVMVAGITSFGL 84
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVA 135
L+ SY LAE+ G TY ALWW V T TT+GYGD P T G+ VA
Sbjct: 20 LLAGSYLAVLAER-------GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVA 72
Query: 136 SCFSVFAISFFAL 148
V I+ F L
Sbjct: 73 VVVMVAGITSFGL 85
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNS-FNTYADALWWGVITVTTIGYGDAVPQTWMGKIV 134
L+ SY LAE+ G P + TY ALWW V T TT+GYGD P T G+ V
Sbjct: 40 LLAGSYLAVLAER--------GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 135 ASCFSVFAISFFAL 148
A V I+ F L
Sbjct: 92 AVVVMVAGITSFGL 105
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNS-FNTYADALWWGVITVTTIGYGDAVPQTWMGKIV 134
L+ SY LAE+ G P + TY ALWW V T TT+GYGD P T G+ V
Sbjct: 40 LLAGSYLAVLAER--------GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 135 ASCFSVFAISFFAL 148
A V I+ F L
Sbjct: 92 AVVVMVAGITSFGL 105
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNS-FNTYADALWWGVITVTTIGYGDAVPQTWMGKIV 134
L+ SY LAE+ G P + TY ALWW V T TT+GYGD P T G+ V
Sbjct: 40 LLAGSYLAVLAER--------GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 135 ASCFSVFAISFFAL 148
A V I+ F L
Sbjct: 92 AVVVMVAGITSFGL 105
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNS-FNTYADALWWGVITVTTIGYGDAVPQTWMGKIV 134
L+ SY LAE+ G P + TY ALWW V T TT+GYGD P T G+ V
Sbjct: 40 LLAGSYLAVLAER--------GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 135 ASCFSVFAISFFAL 148
A V I+ F L
Sbjct: 92 AVVVMVAGITSFGL 105
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNS-FNTYADALWWGVITVTTIGYGDAVPQTWMGKIV 134
L+ SY LAE+ G P + TY ALWW V T T +GYGD P T G++V
Sbjct: 40 LLAGSYLAVLAER--------GAPGAQLITYPRALWWSVETATCVGYGDLYPVTLWGRLV 91
Query: 135 ASCFSVFAISFFAL 148
A V I+ F L
Sbjct: 92 AVVVMVAGITSFGL 105
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNS-FNTYADALWWGVITVTTIGYGDAVPQTWMGKIV 134
L+ SY LAE+ G P + TY ALWW V T TT+GYGD P T G+ V
Sbjct: 40 LLAGSYLAVLAER--------GAPGAQLITYPRALWWSVHTATTVGYGDLYPVTLWGRCV 91
Query: 135 ASCFSVFAISFFAL 148
A V I+ L
Sbjct: 92 AVVVMVAGITSAGL 105
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
Length = 122
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNS-FNTYADALWWGVITVTTIGYGDAVPQTWMGKIV 134
L+ SY LAE+ G P + TY ALWW T TT+ YGD P T G++V
Sbjct: 40 LLAGSYLAVLAER--------GAPGAQLITYPRALWWACETATTVXYGDLYPVTLWGRLV 91
Query: 135 ASCFSVFAISFFAL 148
A V I+ F L
Sbjct: 92 AVVVMVAGITSFGL 105
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 104 TYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFAL 148
+Y DA+WW V T TT+GYGD P T G+ VA I FAL
Sbjct: 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFAL 84
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNS-FNTYADALWWGVITVTTIGYGDAVPQTWMGKIV 134
L+ SY LAE+ G P + TY ALWW V T TT+GYGD P T G+ V
Sbjct: 40 LLAGSYLAVLAER--------GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 135 ASCFSVFAISFFAL 148
A V I+ F L
Sbjct: 92 AVVVVVAGITSFGL 105
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 108 ALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLEF-----EVR 162
+L+W +T+ T+GYGD P T +G V I F AV +E LLEF +++
Sbjct: 49 SLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTF---AVAVERLLEFLINREQMK 105
Query: 163 LRSLTDVHRN 172
L L DV ++
Sbjct: 106 LMGLIDVAKS 115
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 107 DALWWGVITVTTIGYGDAVPQTWMGKI 133
DALW+ V+T+TT+GYGD PQT GKI
Sbjct: 35 DALWFSVVTLTTVGYGDFSPQTDFGKI 61
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 104 TYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLEF 159
++ +L+W +T+ T+GYGD P T +G V I F AV +E LLEF
Sbjct: 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTF---AVAVERLLEF 80
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 104 TYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLEF 159
++ +L+W +T+ T+GYGD P T +G V I F AV +E LLEF
Sbjct: 35 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTF---AVAVERLLEF 87
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 104 TYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLEF 159
++ +L+W +T+ T+GYGD P+T +G V I F AV +E LLEF
Sbjct: 28 SWTVSLYWTFVTIATVGYGDYSPRTPLGMYFTCTLIVLGIGTF---AVAVERLLEF 80
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 104 TYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLEF 159
++ +L+W +T+ T+GYGD P T +G V I F AV ++ LLEF
Sbjct: 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTF---AVAVQRLLEF 80
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 104 TYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLEF 159
++ +L+W +T+ +GYGD P T +G V I F AV +E LLEF
Sbjct: 28 SWTVSLYWTFVTIAAVGYGDYSPHTPLGMYFTCTLIVLGIGTF---AVAVERLLEF 80
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 108 ALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLL--EFEVRLRS 165
+L+W +T+ T+GYGD P T +G V I+ FA+ R+ L +++L
Sbjct: 49 SLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIATFAVAVARLLTFLINREQMKLIG 108
Query: 166 LTDVHRN 172
L DV ++
Sbjct: 109 LIDVAKS 115
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 107 DALWWGVITVTTIGYGDAVPQTWMGKI 133
DAL++ V+T+TT+GYGD PQT GKI
Sbjct: 35 DALYFSVVTLTTVGYGDFSPQTDFGKI 61
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 107 DALWWGVITVTTIGYGDAVPQTWMGKI 133
DAL++ V+T+TT+GYGD PQT GKI
Sbjct: 35 DALFFSVVTLTTVGYGDFSPQTDFGKI 61
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 107 DALWWGVITVTTIGYGDAVPQTWMGKI 133
DAL++ V+T+TT+G+GD PQT GKI
Sbjct: 35 DALYFSVVTLTTVGFGDFSPQTDFGKI 61
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 107 DALWWGVITVTTIGYGDAVPQTWMGKI 133
DAL++ V+T+TT+GYG+ PQT GKI
Sbjct: 35 DALYFSVVTLTTVGYGEFSPQTDFGKI 61
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 107 DALWWGVITVTTIGYGDAVPQTWMGKI 133
DAL++ V+T+TT+GYG+ PQT GKI
Sbjct: 35 DALYFSVVTLTTVGYGNFSPQTDFGKI 61
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 36.2 bits (82), Expect = 0.023, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 107 DALWWGVITVTTIGYGDAVPQTWMGKI 133
DAL++ V+T+TT+G GD PQT GKI
Sbjct: 35 DALYFSVVTLTTVGDGDFSPQTDFGKI 61
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 107 DALWWGVITVTTIGYGDAVPQTWMGKI 133
DAL++ V+T+TT+G G+ PQT GK+
Sbjct: 55 DALYFSVVTLTTVGDGNFSPQTDFGKV 81
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 107 DALWWGVITVTTIGYGDAVPQTWMGKI 133
DAL++ V+T+TT+G G+ PQT GKI
Sbjct: 52 DALYFSVVTLTTVGAGNFSPQTDFGKI 78
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 107 DALWWGVITVTTIGYGDAVPQTWMGKI 133
DAL++ V+T+TT+G G+ PQT GKI
Sbjct: 52 DALYFSVVTLTTVGEGNFSPQTDFGKI 78
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 107 DALWWGVITVTTIGYGDAVPQTWMGKI 133
DAL++ V+T+TT+G G+ PQT GKI
Sbjct: 52 DALYFSVVTLTTVGNGNFSPQTDFGKI 78
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 107 DALWWGVITVTTIGYGDAVPQTWMGKI 133
DAL++ V+T+TT+G G+ PQT GKI
Sbjct: 52 DALYFSVVTLTTVGAGNFEPQTDFGKI 78
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 107 DALWWGVITVTTIGYGDAVPQTWMGKI 133
DAL++ V+T+TT+G G+ PQT GKI
Sbjct: 52 DALYFSVVTLTTVGDGNFSPQTDFGKI 78
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 34.3 bits (77), Expect = 0.090, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 107 DALWWGVITVTTIGYGDAVPQTWMGKI 133
DAL++ V+T+TT+G G+ PQT GKI
Sbjct: 34 DALYFSVVTLTTVGDGNFSPQTDFGKI 60
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 61 HRQELITTLYIGFLGLIFSSYFV--------YLAEKDEKNEVVGGKPNSFNTYADALWWG 112
H +L+T + F+ LI Y V YLA D + +P SF DA ++
Sbjct: 37 HYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDV---IENARPGSFT---DAFFFS 90
Query: 113 VITVTTIGYGDAVP 126
V T+ TIGYG +P
Sbjct: 91 VQTMATIGYGKLIP 104
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
Highlights A Mechanism Of Channel Opening At The
Bundle-Crossing Gate
Length = 301
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 61 HRQELITTLYIGFLGLIFSSYFV--------YLAEKDEKNEVVGGKPNSFNTYADALWWG 112
H +L+T + F+ LI Y V YLA D + +P SF DA ++
Sbjct: 37 HYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDV---IENARPGSFT---DAFFFS 90
Query: 113 VITVTTIGYGDAVP 126
V T+ TIGYG +P
Sbjct: 91 VQTMATIGYGKLIP 104
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 61 HRQELITTLYIGFLGLIFSSYFV--------YLAEKDEKNEVVGGKPNSFNTYADALWWG 112
H +L+T + F+ LI Y V YLA D + +P SF DA ++
Sbjct: 37 HYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDV---IENARPGSFT---DAFFFS 90
Query: 113 VITVTTIGYGDAVP 126
V T+ TIGYG +P
Sbjct: 91 VQTMATIGYGKLIP 104
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 61 HRQELITTLYIGFLGLIFSSYFV--------YLAEKDEKNEVVGGKPNSFNTYADALWWG 112
H +L+T + F+ LI Y V YLA D + +P SF DA ++
Sbjct: 37 HYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDV---IENARPGSFT---DAFFFS 90
Query: 113 VITVTTIGYGDAVP 126
V T+ TIGYG +P
Sbjct: 91 VQTMATIGYGKLIP 104
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 61 HRQELITTLYIGFLGLIFSSYFV--------YLAEKDEKNEVVGGKPNSFNTYADALWWG 112
H +L+T + F+ LI Y V YLA D + +P SF DA ++
Sbjct: 37 HYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDV---IENARPGSFT---DAFFFS 90
Query: 113 VITVTTIGYGDAVP 126
V T+ TIGYG +P
Sbjct: 91 VQTMATIGYGKLIP 104
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 61 HRQELITTLYIGFLGLIFSSYFV--------YLAEKDEKNEVVGGKPNSFNTYADALWWG 112
H +L+T + F+ LI Y V YLA D + +P SF DA ++
Sbjct: 37 HYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDV---IENARPGSFT---DAFFFS 90
Query: 113 VITVTTIGYGDAVP 126
V T+ TIGYG +P
Sbjct: 91 VQTMATIGYGKLIP 104
>pdb|2H8P|C Chain C, Structure Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HFE|C Chain C, Rb+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HG5|C Chain C, Cs+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
Length = 57
Score = 33.5 bits (75), Expect = 0.18, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 76 LIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGY 121
L+ SY LAE+ G TY ALWW T TT+GY
Sbjct: 19 LLAGSYLAVLAER-------GAPGAQLITYPRALWWACETATTVGY 57
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 16/99 (16%)
Query: 55 GSVVFIH---RQEL-ITTLYIGFLG---LIFSSYFVYLAEKDEKNEVVGGKPNSFNTYAD 107
GS F+ RQ L + LY FL L ++S F YL E G+ SF
Sbjct: 4 GSAYFLRGRARQNLKVLLLYCAFLLVMLLAYASIFRYLMWHLE------GRAYSFMA--- 54
Query: 108 ALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFF 146
++W + +TT+G+GD ++ G + AS +V + F
Sbjct: 55 GIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFL 93
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 16/99 (16%)
Query: 55 GSVVFIH---RQEL-ITTLYIGFLG---LIFSSYFVYLAEKDEKNEVVGGKPNSFNTYAD 107
GS F+ RQ L + LY FL L ++S F YL E G+ SF
Sbjct: 4 GSAYFLRGRARQNLKVLLLYCAFLLVMLLAYASIFRYLMWHLE------GRAYSFMA--- 54
Query: 108 ALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFF 146
++W + +TT+G+GD ++ G + AS +V + F
Sbjct: 55 GIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFL 93
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Query: 94 VVGGKP--NSFNT-YADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFAL-- 148
++G P N F + A ++ V T+ T+GYGD PQT +A+ +S AL
Sbjct: 65 MLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALAT 124
Query: 149 ---------PAVRIENLLEFEVRLRSLTD 168
P R E L+ E + S+ D
Sbjct: 125 GCAFIKMSQPKKRAETLMFSEHAVISMRD 153
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 105 YADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISF 145
+ AL++ ++T GYG VP + GK +SV I F
Sbjct: 94 FTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPF 134
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 105 YADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFAL 148
+ A ++ V T+ T+GYGD PQT +A+ +S AL
Sbjct: 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIAL 140
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 105 YADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFAL 148
+ A ++ V T+ T+GYGD PQT +A+ +S AL
Sbjct: 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIAL 140
>pdb|3K06|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K06|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K08|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
pdb|3K08|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
Length = 96
Score = 28.1 bits (61), Expect = 6.8, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 107 DALWWGVITVTTIGYGDAVPQTWMGKI 133
DAL++ V+T+TT+G PQT GKI
Sbjct: 35 DALYFSVVTLTTVG-NTPPPQTDFGKI 60
>pdb|3K03|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K03|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K04|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
pdb|3K04|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
Length = 96
Score = 27.7 bits (60), Expect = 8.4, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 107 DALWWGVITVTTIGYGDAVPQTWMGKI 133
DAL++ V+T+TT+G PQT GKI
Sbjct: 35 DALYFSVVTLTTVG-DTPPPQTDFGKI 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,987,040
Number of Sequences: 62578
Number of extensions: 353811
Number of successful extensions: 968
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 72
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)