Query psy1611
Match_columns 330
No_of_seqs 253 out of 2098
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 21:07:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1419|consensus 100.0 3.1E-57 6.7E-62 427.3 17.8 307 1-326 169-631 (654)
2 KOG3713|consensus 100.0 1.7E-30 3.6E-35 245.7 15.1 154 1-161 275-434 (477)
3 KOG1545|consensus 99.9 1.2E-28 2.7E-33 223.3 4.1 151 1-158 288-447 (507)
4 PLN03192 Voltage-dependent pot 99.9 1.3E-21 2.8E-26 205.0 17.5 178 3-190 142-330 (823)
5 KOG4390|consensus 99.8 2.2E-23 4.8E-28 190.9 -5.7 161 1-170 262-422 (632)
6 PF03520 KCNQ_channel: KCNQ vo 99.8 2.4E-21 5.1E-26 163.0 1.0 99 161-259 61-165 (202)
7 KOG0498|consensus 99.8 3.4E-19 7.4E-24 179.2 15.5 178 3-189 167-373 (727)
8 KOG1419|consensus 99.8 1E-18 2.3E-23 166.5 6.6 78 238-315 284-373 (654)
9 KOG0501|consensus 99.7 1E-16 2.2E-21 153.7 16.8 165 3-176 298-495 (971)
10 PF07885 Ion_trans_2: Ion chan 99.6 1.1E-14 2.4E-19 108.6 7.4 57 102-158 22-78 (79)
11 KOG0500|consensus 99.5 1.1E-13 2.3E-18 131.3 14.0 175 2-193 77-265 (536)
12 PF00520 Ion_trans: Ion transp 99.5 7.7E-14 1.7E-18 120.5 7.2 152 2-153 34-200 (200)
13 KOG3684|consensus 99.5 9.2E-13 2E-17 124.1 14.5 85 68-158 257-341 (489)
14 KOG1420|consensus 99.4 3.2E-13 7E-18 129.7 6.1 143 1-155 197-339 (1103)
15 PRK10537 voltage-gated potassi 99.4 1.9E-11 4.1E-16 117.5 16.4 55 101-155 165-219 (393)
16 KOG0499|consensus 99.0 6.8E-09 1.5E-13 100.8 13.9 139 4-158 312-456 (815)
17 KOG4404|consensus 99.0 1.4E-09 3E-14 98.8 8.6 73 69-155 165-245 (350)
18 KOG2301|consensus 98.7 1.4E-07 3.1E-12 102.9 13.7 152 1-161 507-666 (1592)
19 KOG1418|consensus 98.7 1.6E-07 3.4E-12 90.9 12.6 58 101-158 112-169 (433)
20 KOG2302|consensus 98.7 1.1E-06 2.4E-11 89.7 17.2 158 2-159 1195-1390(1956)
21 PF01007 IRK: Inward rectifier 98.6 1.5E-07 3.2E-12 88.7 9.3 99 60-158 32-140 (336)
22 KOG1418|consensus 98.2 1.9E-07 4E-12 90.4 -1.1 49 103-151 241-297 (433)
23 KOG4404|consensus 98.2 1.9E-06 4.1E-11 78.6 5.2 53 103-155 79-131 (350)
24 PLN03223 Polycystin cation cha 98.1 0.00015 3.2E-09 77.3 17.0 119 32-160 1297-1425(1634)
25 KOG2301|consensus 98.0 5.4E-05 1.2E-09 83.3 12.6 155 2-158 1222-1401(1592)
26 KOG3193|consensus 97.8 2.2E-05 4.9E-10 76.1 4.9 44 103-146 216-259 (1087)
27 KOG3827|consensus 97.7 0.00026 5.6E-09 66.4 9.6 86 73-158 74-168 (400)
28 PF00060 Lig_chan: Ligand-gate 97.2 0.00052 1.1E-08 56.6 4.6 91 67-158 3-97 (148)
29 KOG3599|consensus 97.1 0.021 4.7E-07 59.7 16.9 118 32-161 559-683 (798)
30 PF08016 PKD_channel: Polycyst 97.1 0.0071 1.5E-07 59.2 12.8 119 32-158 302-423 (425)
31 TIGR00870 trp transient-recept 97.0 0.017 3.7E-07 60.6 15.0 122 33-159 478-617 (743)
32 KOG2302|consensus 96.9 0.0005 1.1E-08 71.0 2.4 152 1-158 685-847 (1956)
33 KOG1053|consensus 96.3 0.053 1.2E-06 56.2 12.2 139 67-213 565-737 (1258)
34 KOG4440|consensus 94.8 0.042 9.1E-07 54.8 4.9 92 66-157 570-666 (993)
35 KOG3676|consensus 94.7 0.96 2.1E-05 46.8 14.4 95 65-159 543-649 (782)
36 KOG1052|consensus 93.0 0.25 5.4E-06 51.1 7.0 90 67-158 343-434 (656)
37 KOG1054|consensus 91.6 0.094 2E-06 52.2 1.7 54 104-158 595-648 (897)
38 KOG3609|consensus 85.4 10 0.00022 39.7 11.3 129 32-163 474-617 (822)
39 KOG0510|consensus 84.7 14 0.00031 38.7 11.9 105 43-158 640-758 (929)
40 PF00520 Ion_trans: Ion transp 84.6 3.4 7.3E-05 34.7 6.7 30 33-62 62-91 (200)
41 PF00612 IQ: IQ calmodulin-bin 83.8 0.97 2.1E-05 24.2 1.9 15 284-298 2-16 (21)
42 KOG3533|consensus 83.8 6.4 0.00014 43.3 9.2 121 41-161 2398-2573(2706)
43 KOG3614|consensus 83.5 26 0.00056 38.9 13.6 30 126-155 1010-1040(1381)
44 PRK05482 potassium-transportin 74.0 5.7 0.00012 40.1 5.1 69 74-142 290-368 (559)
45 COG0168 TrkG Trk-type K+ trans 73.8 12 0.00026 37.5 7.4 48 104-151 424-480 (499)
46 PF02386 TrkH: Cation transpor 73.7 2.1 4.6E-05 40.8 2.1 44 105-148 295-345 (354)
47 PRK10750 potassium transporter 73.4 17 0.00037 36.3 8.4 47 105-151 422-475 (483)
48 PRK05482 potassium-transportin 72.8 32 0.00069 34.9 10.0 53 103-155 450-505 (559)
49 TIGR00933 2a38 potassium uptak 69.7 6.9 0.00015 37.8 4.6 42 103-144 230-273 (390)
50 KOG1545|consensus 68.5 14 0.0003 35.2 6.0 26 29-54 322-347 (507)
51 KOG3713|consensus 66.8 28 0.00061 34.4 8.0 21 31-51 308-328 (477)
52 KOG3684|consensus 63.1 69 0.0015 31.6 9.7 48 111-158 290-337 (489)
53 smart00015 IQ Short calmodulin 57.5 8.7 0.00019 21.5 1.7 16 283-298 3-18 (26)
54 COG1226 Kch Kef-type K+ transp 52.6 4.1 8.9E-05 34.3 -0.3 46 103-148 116-161 (212)
55 PF07077 DUF1345: Protein of u 48.5 1.7E+02 0.0038 25.0 12.5 51 101-151 129-179 (180)
56 PF14584 DUF4446: Protein of u 45.7 87 0.0019 26.1 6.6 30 197-226 43-72 (151)
57 TIGR00934 2a38euk potassium up 43.7 48 0.001 35.1 5.7 63 79-145 598-662 (800)
58 PRK10750 potassium transporter 42.8 96 0.0021 31.0 7.5 48 103-150 205-257 (483)
59 COG1422 Predicted membrane pro 41.7 2E+02 0.0043 25.2 8.3 13 144-156 51-63 (201)
60 TIGR00933 2a38 potassium uptak 41.5 1.1E+02 0.0023 29.6 7.5 48 103-150 127-180 (390)
61 PF10011 DUF2254: Predicted me 41.2 2.5E+02 0.0055 26.9 10.0 76 101-176 97-172 (371)
62 COG0168 TrkG Trk-type K+ trans 36.8 3E+02 0.0066 27.7 10.0 46 104-150 198-250 (499)
63 PF02888 CaMBD: Calmodulin bin 35.6 30 0.00066 25.3 2.0 24 277-300 4-27 (77)
64 KOG0501|consensus 34.0 1.2E+02 0.0026 31.0 6.4 77 27-116 321-399 (971)
65 PF06667 PspB: Phage shock pro 33.8 1.7E+02 0.0037 21.3 5.7 26 199-224 41-66 (75)
66 COG1422 Predicted membrane pro 32.0 3.3E+02 0.0072 23.8 8.1 34 140-173 51-84 (201)
67 KOG4427|consensus 31.8 43 0.00092 35.1 3.0 31 270-301 18-48 (1096)
68 PRK02898 cobalt transport prot 30.7 1.6E+02 0.0035 22.7 5.4 41 101-154 50-90 (100)
69 PF13202 EF-hand_5: EF hand; P 30.5 27 0.00059 19.4 0.9 21 289-309 1-22 (25)
70 TIGR00680 kdpA K+-transporting 29.7 5.4E+02 0.012 26.2 10.2 67 75-141 294-372 (563)
71 PF05767 Pox_A14: Poxvirus vir 29.6 2.5E+02 0.0054 21.2 6.3 27 126-152 39-66 (92)
72 PF04791 LMBR1: LMBR1-like mem 29.5 5.5E+02 0.012 25.2 12.6 22 137-158 173-194 (471)
73 COG1615 Uncharacterized conser 28.7 1.9E+02 0.0041 30.4 7.0 37 114-150 220-256 (885)
74 PLN03223 Polycystin cation cha 28.6 2.3E+02 0.005 32.2 7.9 13 30-42 1301-1313(1634)
75 PF01350 Flavi_NS4A: Flaviviru 26.8 1.6E+02 0.0035 24.3 5.1 61 64-139 47-111 (144)
76 PRK10697 DNA-binding transcrip 25.4 3E+02 0.0065 21.9 6.3 60 129-188 34-108 (118)
77 TIGR00870 trp transient-recept 25.0 7.2E+02 0.016 26.0 11.0 13 130-142 560-572 (743)
78 PHA00407 phage lambda Rz1-like 24.9 2.8E+02 0.0061 20.2 5.6 15 30-44 4-18 (84)
79 PF11167 DUF2953: Protein of u 23.5 68 0.0015 21.3 2.0 25 117-144 1-25 (53)
80 PF10066 DUF2304: Uncharacteri 22.0 3.1E+02 0.0068 21.4 5.9 12 105-116 30-41 (115)
81 PF07047 OPA3: Optic atrophy 3 21.7 2.4E+02 0.0051 22.8 5.2 50 106-155 39-94 (134)
82 TIGR02976 phageshock_pspB phag 21.4 3.3E+02 0.0072 19.8 6.4 26 199-224 41-66 (75)
83 PF05529 Bap31: B-cell recepto 21.0 4.6E+02 0.0099 22.3 7.3 15 144-158 111-125 (192)
84 PHA02898 virion envelope prote 20.1 3.9E+02 0.0084 20.1 6.3 25 128-152 41-66 (92)
No 1
>KOG1419|consensus
Probab=100.00 E-value=3.1e-57 Score=427.31 Aligned_cols=307 Identities=50% Similarity=0.820 Sum_probs=261.6
Q ss_pred CeeeehhhHHhHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1611 1 MSEKNLIVVVASLIVLTIGSNGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSS 80 (330)
Q Consensus 1 ~~viDll~~iP~~l~~~~~~~~~~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s 80 (330)
||+||++++++++.++.++++|++|+++++|.+|||+|+||+|++|++++|++|+++++.|.+++++.|||+|+++|+.|
T Consensus 169 ~cvIDiivi~Asi~vl~~g~qG~vfatSalrslRFlQILRmlr~DRrggTWKLLGSvV~aH~~ELiTt~YIGFL~LIfsS 248 (654)
T KOG1419|consen 169 FCVIDIIVIIASIAVLAAGSQGNVFATSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAHSKELITTWYIGFLVLIFSS 248 (654)
T ss_pred ceEEEEeeeeeeeeEEEecCccceeehhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy1611 81 YFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLE-- 158 (330)
Q Consensus 81 ~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~~l~-- 158 (330)
+++|++|++..+ ++.+..|.+|+||+||+++|+|||||||++|+||.||+++.++.++|++|||++.|++++.|+
T Consensus 249 flVYLaEKd~~~---e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALK 325 (654)
T KOG1419|consen 249 FLVYLAEKDAQG---EGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALK 325 (654)
T ss_pred HHHHHhhccccc---ccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhh
Confidence 999999999766 356678999999999999999999999999999999999999999999999999997665000
Q ss_pred --------------------------------------------------------------------------------
Q psy1611 159 -------------------------------------------------------------------------------- 158 (330)
Q Consensus 159 -------------------------------------------------------------------------------- 158 (330)
T Consensus 326 VQeq~RQKHf~rrr~pAA~LIQc~WR~yaa~~~r~~~~aTW~~h~~~~~~~~~~~~~~~~~~~~~~~~k~r~rl~~~R~~ 405 (654)
T KOG1419|consen 326 VQEQHRQKHFNRRRNPAASLIQCAWRYYAAENSRPPLSATWKIHIRYVLLAHRKVTPEEPNSSQKLSLKDRVRLSKKRGV 405 (654)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHHHhcccCCCCcceeeeeeeeeccccccccCCCCCCccchhhhhHhhhhcCCCCC
Confidence
Q ss_pred ------------------------------------------------------------------------HHHhhhhh
Q psy1611 159 ------------------------------------------------------------------------FEVRLRSL 166 (330)
Q Consensus 159 ------------------------------------------------------------------------~~~~~~~l 166 (330)
....++++
T Consensus 406 ~~k~k~~~~~~t~p~~~~~~~~~s~~~~~k~~sf~~~~R~~~~~r~k~~~~~~~~~~~a~~~d~~~ee~~~~~~~~iedl 485 (654)
T KOG1419|consen 406 NKKSKTHQTSLTSPSLKDSPEGMSPSKVPKQDSFDDRERKRSTLREKARLAFRQSNEDAETGDLEVEEKSTPCIFHIEDL 485 (654)
T ss_pred CccccCCcccccccccccCccccCCcccccccccchhhhcchhhhhhcchhhhhccccccccccccccccCCCcccHHhc
Confidence 02347789
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHhccchhhHhhHHHHHHHHHhhhCCCCCCcccccCCCCCCCC
Q psy1611 167 TDVHRNAIRAIRKIKYFVARRKFQQARKPYDVRDVIEQYSQGHLNMMVRIKELQRRLDQTLGKPGSYLAGIDRSGNIKPM 246 (330)
Q Consensus 167 ~~~~~~~i~~i~~~~~~l~~~k~~~~~~~~~v~d~~e~~~~g~~d~~~~i~~lq~~ld~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
.+.+++.++++++++++++++||+|+++|||++|++|||++||+||+++||+||.++|++.|+|+...+...+.+...+.
T Consensus 486 ~p~~k~~iraiR~l~~~vakrkFketlrPYDVkDVIEQYSaGHldm~~RiK~LQ~rlDqi~Gk~~~~~~~~~~~~~~~~~ 565 (654)
T KOG1419|consen 486 TPALKNAIRAIRRLQFLVAKRKFKETLRPYDVKDVIEQYSAGHLDMLSRIKELQARLDQIVGKPPVSTDRPADSEIPEKL 565 (654)
T ss_pred CHHHHHHHHHhHhhhhhhhhHHHHHhcCcccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHcCCCCCCCCCccccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888765555666889
Q ss_pred CcchhhHHHhhhhccccchhHHHhHHHHhhhhhhhcchHHHHHHHHHHHhhhccCC-cc-cceeeeeeccCCCCCCccch
Q psy1611 247 TIGARLYRVEQQGILGSGFALKVQQKQRQKHFNRQIPAAAMLIQCLWRCFAADKCF-NS-QATWDIYIKEPHSSKDNSSI 324 (330)
Q Consensus 247 ~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 324 (330)
+|++|+.++|+|+. ..-++--...-.++||.=...+..... .. .-+. -....+++..|+.|+
T Consensus 566 Sm~~Rl~~vEkqv~---------------~le~Kld~l~~~~~q~l~l~~~~~~~~s~~p~~e~-~~~s~~~~~~~~r~~ 629 (654)
T KOG1419|consen 566 SMMGRLVKVEKQVQ---------------SLEKKLDLLVEILMQCLRLMMDTSEAASYSPPKEG-EPTSPYHSPEDSRDI 629 (654)
T ss_pred hHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhccccccccccCCCCCC-CCCCCCCCcccccCc
Confidence 99999999999981 111222334556778766664222221 11 1122 334555677776666
Q ss_pred hh
Q psy1611 325 SK 326 (330)
Q Consensus 325 ~~ 326 (330)
+.
T Consensus 630 ~~ 631 (654)
T KOG1419|consen 630 SD 631 (654)
T ss_pred cc
Confidence 54
No 2
>KOG3713|consensus
Probab=99.97 E-value=1.7e-30 Score=245.69 Aligned_cols=154 Identities=32% Similarity=0.510 Sum_probs=138.4
Q ss_pred CeeeehhhHHhHHHHHHhcCCCh------hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 1 MSEKNLIVVVASLIVLTIGSNGQ------IFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFL 74 (330)
Q Consensus 1 ~~viDll~~iP~~l~~~~~~~~~------~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l 74 (330)
+|+||+++++|+++.+.....+. ..+...+|++|++|++|++|+.|+...++.++..++.+.+++..+++.+.+
T Consensus 275 LNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~ 354 (477)
T KOG3713|consen 275 LNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAV 354 (477)
T ss_pred chHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999988876432221 123367999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 75 GLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIE 154 (330)
Q Consensus 75 ~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~ 154 (330)
.+.+||.++|++|++.... +|.+.+.++||+++|||||||||++|.|+.||+++...+++|++++|+|+.+|.
T Consensus 355 GI~iFStlvY~~Ek~~~~~-------~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv 427 (477)
T KOG3713|consen 355 GIVIFSTLVYFAEKDEPDT-------KFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIV 427 (477)
T ss_pred HHHHHHHHHHHhhhcCCCC-------CCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHh
Confidence 9999999999999987654 699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1611 155 NLLEFEV 161 (330)
Q Consensus 155 ~~l~~~~ 161 (330)
++|....
T Consensus 428 ~nF~~~y 434 (477)
T KOG3713|consen 428 NNFSMYY 434 (477)
T ss_pred hhHHHHH
Confidence 9887443
No 3
>KOG1545|consensus
Probab=99.95 E-value=1.2e-28 Score=223.26 Aligned_cols=151 Identities=32% Similarity=0.585 Sum_probs=137.7
Q ss_pred CeeeehhhHHhHHHHHHh--------cC-CChhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 1 MSEKNLIVVVASLIVLTI--------GS-NGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYI 71 (330)
Q Consensus 1 ~~viDll~~iP~~l~~~~--------~~-~~~~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i 71 (330)
+|+||+++++|+++.+.. +. ..+.+....+|++|+.|++|++|+-|++..++.|+..++++++++..++++
T Consensus 288 mNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFF 367 (507)
T KOG1545|consen 288 MNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFF 367 (507)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999887742 11 134457778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHH
Q psy1611 72 GFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAV 151 (330)
Q Consensus 72 ~~l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig 151 (330)
+|+.++++|-.+|++|.+..+ +.|.+..|||||+++|||||||||++|.|.-||++..++.+.|+..+|+++.
T Consensus 368 lfIgviLFsSavYFAEade~~-------S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVP 440 (507)
T KOG1545|consen 368 LFIGVILFSSAVYFAEADEPE-------SHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVP 440 (507)
T ss_pred HHHHHHHHhceeeeeecCCCc-------cCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEeccccc
Confidence 999999999999999998655 4899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1611 152 RIENLLE 158 (330)
Q Consensus 152 ~i~~~l~ 158 (330)
+|++++.
T Consensus 441 VIVsNFn 447 (507)
T KOG1545|consen 441 VIVSNFN 447 (507)
T ss_pred EEEeccc
Confidence 9999776
No 4
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.87 E-value=1.3e-21 Score=204.97 Aligned_cols=178 Identities=16% Similarity=0.218 Sum_probs=111.4
Q ss_pred eeehhhHHhHHHHHHh--cCCChhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1611 3 EKNLIVVVASLIVLTI--GSNGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSS 80 (330)
Q Consensus 3 viDll~~iP~~l~~~~--~~~~~~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s 80 (330)
++|+++++|+.++... +..........++++|++|+.|+.++.+. ++.... ....+..++.++.+.+++++++|
T Consensus 142 ~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~~~~---le~~~~-~~~~~~~~~kli~~~l~~~H~~a 217 (823)
T PLN03192 142 LMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFTR---LEKDIR-FSYFWIRCARLLSVTLFLVHCAG 217 (823)
T ss_pred HHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999665432 22111112233444444444444443332 221111 11122345555666666788888
Q ss_pred HHhhheeeCC---CccccC------CCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHH
Q psy1611 81 YFVYLAEKDE---KNEVVG------GKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAV 151 (330)
Q Consensus 81 ~~~~~~e~~~---~~~~~~------~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig 151 (330)
|++|++.... +..|.. ...+.+..|..|+||+++|||||||||++|.|..|+++++++|++|++++|+++|
T Consensus 218 C~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig 297 (823)
T PLN03192 218 CLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIG 297 (823)
T ss_pred HHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 8888765321 111111 1123455699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q psy1611 152 RIENLLEFEVRLRSLTDVHRNAIRAIRKIKYFVARRKFQ 190 (330)
Q Consensus 152 ~i~~~l~~~~~~~~l~~~~~~~i~~i~~~~~~l~~~k~~ 190 (330)
.+++.+.+. .....+..+.+..++.|+.++++.
T Consensus 298 ~i~~li~~~------~~~~~~f~~~~~~~~~ym~~~~lp 330 (823)
T PLN03192 298 NMTNLVVEG------TRRTMEFRNSIEAASNFVGRNRLP 330 (823)
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999966532 223334444555566666665554
No 5
>KOG4390|consensus
Probab=99.84 E-value=2.2e-23 Score=190.88 Aligned_cols=161 Identities=26% Similarity=0.412 Sum_probs=140.3
Q ss_pred CeeeehhhHHhHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1611 1 MSEKNLIVVVASLIVLTIGSNGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSS 80 (330)
Q Consensus 1 ~~viDll~~iP~~l~~~~~~~~~~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s 80 (330)
+++||.++++|+++-+.+..+..+. .++--||.+|++|+++.-|+.+.++.|+..++....++..+++-+-..+|+++
T Consensus 262 MSiIDVvAIlPYYigLv~t~N~DVS--GaFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFA 339 (632)
T KOG4390|consen 262 MSIIDVVAILPYYIGLVMTDNEDVS--GAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFA 339 (632)
T ss_pred HHHHHHhhhhhhheEEEecCCcccc--ceeEEEEeeeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4789999999999888765544332 23446899999999999999999999999999999999999988888999999
Q ss_pred HHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 81 YFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLEFE 160 (330)
Q Consensus 81 ~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~~l~~~ 160 (330)
.++|++|++.+.. .|.+...|||++++||||.||||++|.|..|++|..++.+.|+.++|+++.+|++++...
T Consensus 340 TvMfYAEKg~~at-------~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRI 412 (632)
T KOG4390|consen 340 TVMFYAEKGSSAT-------KFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRI 412 (632)
T ss_pred HHHHhhhcccccc-------ccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHH
Confidence 9999999986554 899999999999999999999999999999999999999999999999999999998866
Q ss_pred HhhhhhhHHH
Q psy1611 161 VRLRSLTDVH 170 (330)
Q Consensus 161 ~~~~~l~~~~ 170 (330)
....+..++.
T Consensus 413 YHQNQRADKR 422 (632)
T KOG4390|consen 413 YHQNQRADKR 422 (632)
T ss_pred HhhhhhhhHH
Confidence 6554444433
No 6
>PF03520 KCNQ_channel: KCNQ voltage-gated potassium channel; InterPro: IPR013821 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. KCNQ channels (also known as KQT-like channels) differ from other voltage-gated 6 TM helix channels, chiefly in that they possess no tetramerisation domain. Consequently, they rely on interaction with accessory subunits, or form heterotetramers with other members of the family []. Currently, 5 members of the KCNQ family are known. These have been found to be widely distributed within the body, having been shown to be expressed in the heart, brain, pancreas, lung, placenta and ear. They were initially cloned as a result of a search for proteins involved in cardiac arhythmia. Subsequently, mutations in other KCNQ family members have been shown to be responsible for some forms of hereditary deafness [] and benign familial neonatal epilepsy []. This entry represents a region found at the C terminus of these proteins.; PDB: 3HFE_B 3HFC_C 3BJ4_B 2OVC_A.
Probab=99.81 E-value=2.4e-21 Score=162.98 Aligned_cols=99 Identities=59% Similarity=0.892 Sum_probs=14.5
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHhccchhhHhhHHHHHHHHHhhhCCCCCCcccccC-
Q psy1611 161 VRLRSLTDVHRNAIRAIRKIKYFVARRKFQQARKPYDVRDVIEQYSQGHLNMMVRIKELQRRLDQTLGKPGSYLAGIDR- 239 (330)
Q Consensus 161 ~~~~~l~~~~~~~i~~i~~~~~~l~~~k~~~~~~~~~v~d~~e~~~~g~~d~~~~i~~lq~~ld~~~~~~~~~~~~~~~- 239 (330)
...+++.+.+++.|+++++|+++++++||+++++||||+|++|||++||+||+++||+||.++|+++|+++...+...+
T Consensus 61 ~~~~~l~~~~k~~irair~~k~~varrkFkealrPYDVkDViEQYSaGHldml~riK~lQ~rlDqilGk~~~~~~~~~~~ 140 (202)
T PF03520_consen 61 FTVEDLTPAHKNAIRAIRKMKFFVARRKFKEALRPYDVKDVIEQYSAGHLDMLVRIKSLQRRLDQILGKPGSKTDKKYRS 140 (202)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhHHHHHHHHHHHhhcccccccCCcccccccccc
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999987665432
Q ss_pred -----CCCCCCCCcchhhHHHhhhh
Q psy1611 240 -----SGNIKPMTIGARLYRVEQQG 259 (330)
Q Consensus 240 -----~~~~~~~~~~~r~~~~~~~~ 259 (330)
..+..+.+++||+++||+|+
T Consensus 141 k~~~~~e~~~~~sm~~Rl~kvE~qV 165 (202)
T PF03520_consen 141 KGEPDGEDPEDISMMGRLVKVERQV 165 (202)
T ss_dssp ----------CCCHHHHHHHHHHHH
T ss_pred cCCccccCCCCCchhhHHHHHHHHH
Confidence 23567899999999999998
No 7
>KOG0498|consensus
Probab=99.81 E-value=3.4e-19 Score=179.20 Aligned_cols=178 Identities=19% Similarity=0.237 Sum_probs=115.4
Q ss_pred eeehhhHHhHHHHHHh-c------CCChhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy1611 3 EKNLIVVVASLIVLTI-G------SNGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIH-RQELITTLYIGFL 74 (330)
Q Consensus 3 viDll~~iP~~l~~~~-~------~~~~~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~-~~~l~~~l~i~~l 74 (330)
+||+++++|+..++.. . ..... .+..++.+.|++|+.|+.+....+......++.. +......+++.++
T Consensus 167 iiDlis~lP~~~i~~~~~~~~~~~~~~~~---~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l 243 (727)
T KOG0498|consen 167 LIDLISTLPFDQIVVLVVIGSTSLALEST---ILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLL 243 (727)
T ss_pred HHHHHHhcChhhheeeeeecccchhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 6899999999544431 1 12211 2334444444444444444444444444444422 2234456666677
Q ss_pred HHHHHhHHhhheeeCCCccccCC-----------CCCC----CC------cchhhHHhhhheeeccccCCCccCCchhhH
Q psy1611 75 GLIFSSYFVYLAEKDEKNEVVGG-----------KPNS----FN------TYADALWWGVITVTTIGYGDAVPQTWMGKI 133 (330)
Q Consensus 75 ~~i~~s~~~~~~e~~~~~~~~~~-----------~~~~----f~------~y~~aly~~~iTlTTVGYGDi~P~t~~gri 133 (330)
..++.||++|++.....+..... ...+ |. .|..|+||++.||||+||||.+|.++.|++
T Consensus 244 ~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~i 323 (727)
T KOG0498|consen 244 ASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGLVHANNMGEKI 323 (727)
T ss_pred HHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHH
Confidence 88888888888744333111110 1111 32 588999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q psy1611 134 VASCFSVFAISFFALPAVRIENLLEFEVRLRSLTDVHRNAIRAIRKIKYFVARRKF 189 (330)
Q Consensus 134 ~~~~~~l~Gv~~~a~~ig~i~~~l~~~~~~~~l~~~~~~~i~~i~~~~~~l~~~k~ 189 (330)
|+++.|++|.+++|+++|+|++.++ .++....+.-.+.+.+++|+.++++
T Consensus 324 Fsi~~mi~GllL~A~lIGNmt~~iq------s~tsR~~~~r~k~rd~e~~m~~~~L 373 (727)
T KOG0498|consen 324 FSIFIMLFGLLLFAYLIGNMTALLQ------SLTSRTEEMRDKMRDAEQWMSRRQL 373 (727)
T ss_pred HHHHHHHHhHHHHHHHHhhHHHhHH------HHhHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999665 3333444444444556667776666
No 8
>KOG1419|consensus
Probab=99.75 E-value=1e-18 Score=166.54 Aligned_cols=78 Identities=50% Similarity=0.727 Sum_probs=73.2
Q ss_pred cCCCCCCCCCcchhhHH-----------HhhhhccccchhHHHhHHHHhhhhhhhcchHHHHHHHHHHHhhhccCC-ccc
Q psy1611 238 DRSGNIKPMTIGARLYR-----------VEQQGILGSGFALKVQQKQRQKHFNRQIPAAAMLIQCLWRCFAADKCF-NSQ 305 (330)
Q Consensus 238 ~~~~~~~~~~~~~r~~~-----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 305 (330)
-++||+.|.|+.||+.+ -.++++||+|++|||||+|||||++|||++||.||||+||||++++++ ++.
T Consensus 284 IGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~RQKHf~rrr~pAA~LIQc~WR~yaa~~~r~~~~ 363 (654)
T KOG1419|consen 284 IGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQHRQKHFNRRRNPAASLIQCAWRYYAAENSRPPLS 363 (654)
T ss_pred eccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcccCCCCcc
Confidence 48999999999999886 478999999999999999999999999999999999999999999987 889
Q ss_pred ceeeeeeccC
Q psy1611 306 ATWDIYIKEP 315 (330)
Q Consensus 306 ~~~~~~~~~~ 315 (330)
|||++|....
T Consensus 364 aTW~~h~~~~ 373 (654)
T KOG1419|consen 364 ATWKIHIRYV 373 (654)
T ss_pred eeeeeeeeec
Confidence 9999999744
No 9
>KOG0501|consensus
Probab=99.73 E-value=1e-16 Score=153.71 Aligned_cols=165 Identities=18% Similarity=0.205 Sum_probs=113.2
Q ss_pred eeehhhHHhHHHHHHhcCC--ChhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1611 3 EKNLIVVVASLIVLTIGSN--GQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSS 80 (330)
Q Consensus 3 viDll~~iP~~l~~~~~~~--~~~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s 80 (330)
+||+++.+|+.++.++... +.....++++++|+||+-|+.|-..+ .-.+ ....++.++.+..++.++.+
T Consensus 298 vIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRVaRKLD~---YlEY------GAA~LvLLlC~y~lvAHWlA 368 (971)
T KOG0501|consen 298 VIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRVARKLDH---YLEY------GAAVLVLLLCVYGLVAHWLA 368 (971)
T ss_pred HHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh------hHHHHHHHHHHHHHHHHHHH
Confidence 6899999999888776443 22223445555555555555543222 1112 22234444555556677788
Q ss_pred HHhhheeeCCCc------ccc-------------------------CCCCCCCCcchhhHHhhhheeeccccCCCccCCc
Q psy1611 81 YFVYLAEKDEKN------EVV-------------------------GGKPNSFNTYADALWWGVITVTTIGYGDAVPQTW 129 (330)
Q Consensus 81 ~~~~~~e~~~~~------~~~-------------------------~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~ 129 (330)
|++|.+...+-. ..+ .+.++.-.-|+.|+||++..|||||||++.|.|+
T Consensus 369 CiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD 448 (971)
T KOG0501|consen 369 CIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTD 448 (971)
T ss_pred HhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCcccceehhhhhhhhhhhhcccccccCCCcc
Confidence 888877552110 000 1223344679999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy1611 130 MGKIVASCFSVFAISFFALPAVRIENLLEFEVRLRSLTDVHRNAIRA 176 (330)
Q Consensus 130 ~gri~~~~~~l~Gv~~~a~~ig~i~~~l~~~~~~~~l~~~~~~~i~~ 176 (330)
.+++|++++|++|..++|.+.|.++.++++..+......+..+.++.
T Consensus 449 ~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVRe 495 (971)
T KOG0501|consen 449 NEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVRE 495 (971)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999998777666655555555554
No 10
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.55 E-value=1.1e-14 Score=108.62 Aligned_cols=57 Identities=37% Similarity=0.623 Sum_probs=51.0
Q ss_pred CCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 102 FNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLE 158 (330)
Q Consensus 102 f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~~l~ 158 (330)
..+|.||+||+++|+|||||||+.|.|+.||+++++++++|+.++++.++.+++.+.
T Consensus 22 ~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 22 KWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 389999999999999999999999999999999999999999999999999988654
No 11
>KOG0500|consensus
Probab=99.54 E-value=1.1e-13 Score=131.32 Aligned_cols=175 Identities=17% Similarity=0.244 Sum_probs=120.1
Q ss_pred eeeehhhHHhHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1611 2 SEKNLIVVVASLIVLTIGSNGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSY 81 (330)
Q Consensus 2 ~viDll~~iP~~l~~~~~~~~~~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s~ 81 (330)
..+|+++++|..+....... .+..|+.|++|+-|++....+..+ ...+.+...+..+...+++++++.||
T Consensus 77 f~lD~l~liP~D~l~~~~~~-----~~~~r~nRllk~yRl~~F~~rTet-----rT~~Pn~fri~~lv~~~~ilfHWNaC 146 (536)
T KOG0500|consen 77 FKLDVLSLIPLDLLLFKDGS-----ASLERLNRLLKIYRLFEFFDRTET-----RTTYPNAFRISKLVHYCLILFHWNAC 146 (536)
T ss_pred hhhhhhhhcchhHHhhcCCc-----chHHHHHHHHHHHHHHHHHHHhcc-----ccCCchHHHHHHHHHHHHHHHHHhhH
Confidence 46899999999666544322 234556666666666655444433 33344555566666677777888888
Q ss_pred HhhheeeCCC---ccccCC--CCCCC---------CcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHH
Q psy1611 82 FVYLAEKDEK---NEVVGG--KPNSF---------NTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFA 147 (330)
Q Consensus 82 ~~~~~e~~~~---~~~~~~--~~~~f---------~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a 147 (330)
++|++-...+ ++|.-+ ..+.| ..|.-|+||+..|+||+| --..|.|..+..|.++=.++|+.+||
T Consensus 147 lYf~iS~~~g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFA 225 (536)
T KOG0500|consen 147 LYFLISKAIGFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFA 225 (536)
T ss_pred HHHhhhHhcCccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHh
Confidence 8877644322 112211 11222 348999999999999998 46689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy1611 148 LPAVRIENLLEFEVRLRSLTDVHRNAIRAIRKIKYFVARRKFQQAR 193 (330)
Q Consensus 148 ~~ig~i~~~l~~~~~~~~l~~~~~~~i~~i~~~~~~l~~~k~~~~~ 193 (330)
.++|.+++..+ ++.....+.-+.+..+|+|+.-|++++..
T Consensus 226 tIvG~VGsmVt------nmna~r~EFq~~mDGiK~YM~~RkV~~~l 265 (536)
T KOG0500|consen 226 TIVGNVGSMVT------NMNAARTEFQAKMDGIKQYMRYRKVPKAL 265 (536)
T ss_pred hhhccHhHHHH------hhhHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 99999999544 55555555666666777777777766433
No 12
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.47 E-value=7.7e-14 Score=120.45 Aligned_cols=152 Identities=24% Similarity=0.371 Sum_probs=108.4
Q ss_pred eeeehhhHHhHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1611 2 SEKNLIVVVASLIVLTIGSNGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSY 81 (330)
Q Consensus 2 ~viDll~~iP~~l~~~~~~~~~~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s~ 81 (330)
|++|+++++|+++.......+.......++.+|++|++|++|+.+..+..+.+...+....+.+.....+.+++++.+++
T Consensus 34 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~ 113 (200)
T PF00520_consen 34 NWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFAC 113 (200)
T ss_dssp HHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccccccccccccccceEEEEEeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 68999999999666544332211112356677777788888888888877777677777777777777777777776666
Q ss_pred HhhheeeCCCcc---------ccCCCCCCCCcchhhHHhhhheeeccccCCCccC-----CchhhHHHHH-HHHHHHHHH
Q psy1611 82 FVYLAEKDEKNE---------VVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQ-----TWMGKIVASC-FSVFAISFF 146 (330)
Q Consensus 82 ~~~~~e~~~~~~---------~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~-----t~~gri~~~~-~~l~Gv~~~ 146 (330)
+.+...++.... ......+.|++|..|+||.+.++|+.||||..|. ++.+.++.++ ..+.++.++
T Consensus 114 ~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 193 (200)
T PF00520_consen 114 IGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLL 193 (200)
T ss_dssp HHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHH
T ss_pred hhheecccccccccccccccccccccccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHH
Confidence 655554443211 1122335788999999999999999999999998 8999999944 455557999
Q ss_pred HHHHHHH
Q psy1611 147 ALPAVRI 153 (330)
Q Consensus 147 a~~ig~i 153 (330)
++++|+|
T Consensus 194 nlliavi 200 (200)
T PF00520_consen 194 NLLIAVI 200 (200)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999875
No 13
>KOG3684|consensus
Probab=99.47 E-value=9.2e-13 Score=124.08 Aligned_cols=85 Identities=27% Similarity=0.387 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHH
Q psy1611 68 TLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFA 147 (330)
Q Consensus 68 ~l~i~~l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a 147 (330)
++.+.+.+|++.+|.+-.+|+...... .-.+|.+++|...+|..+|||||++|.|..||.++++..++|.++.|
T Consensus 257 L~vftl~~Wii~sW~~~~cER~~~~~~------~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sa 330 (489)
T KOG3684|consen 257 LLVFTLSLWIIASWMLRQCERYHDSQD------VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSS 330 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchh------hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHH
Confidence 334445678889999999999765421 23679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1611 148 LPAVRIENLLE 158 (330)
Q Consensus 148 ~~ig~i~~~l~ 158 (330)
+.++.++..++
T Consensus 331 llvAvisRKLe 341 (489)
T KOG3684|consen 331 LLVAVIARKLE 341 (489)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 14
>KOG1420|consensus
Probab=99.39 E-value=3.2e-13 Score=129.70 Aligned_cols=143 Identities=21% Similarity=0.288 Sum_probs=105.2
Q ss_pred CeeeehhhHHhHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1611 1 MSEKNLIVVVASLIVLTIGSNGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSS 80 (330)
Q Consensus 1 ~~viDll~~iP~~l~~~~~~~~~~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s 80 (330)
++++|++.+-|+++.+....+ .-.+|++|.+|++.+....+.+..+. ..+.-++.-++.+.+.+++.++
T Consensus 197 ys~vdfftippsfvsiyl~r~--------wlglrflralrlmtvpdilqylnilk---tsssirl~qlvsifisvwltaa 265 (1103)
T KOG1420|consen 197 YSVVDFFTIPPSFVSIYLNRS--------WLGLRFLRALRLMTVPDILQYLNILK---TSSSIRLVQLVSIFISVWLTAA 265 (1103)
T ss_pred hhheeeeecCchheEEEeccc--------hHHHHHHHHHHhccHHHHHHHHHHHh---ccchhhHHHHHHHHHHHHHhhc
Confidence 367888888887655433221 33588888888887766666654442 2233345556666666788888
Q ss_pred HHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 81 YFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIEN 155 (330)
Q Consensus 81 ~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~ 155 (330)
.++++.|...++- .+..++.--+|+++.|+.++||+||||||++-.|..||+|.+++++.|..+||..+.-|.+
T Consensus 266 g~ihllensgdp~-~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiie 339 (1103)
T KOG1420|consen 266 GFIHLLENSGDPW-ENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIE 339 (1103)
T ss_pred ceeehhhcCCChh-HhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 8899998765442 2222334468999999999999999999999999999999999999999999988876655
No 15
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.37 E-value=1.9e-11 Score=117.47 Aligned_cols=55 Identities=24% Similarity=0.523 Sum_probs=51.2
Q ss_pred CCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 101 SFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIEN 155 (330)
Q Consensus 101 ~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~ 155 (330)
.+.++.+|+||+++|+||+||||++|.|+.||++++++++.|+++|++.++.+..
T Consensus 165 ~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~ 219 (393)
T PRK10537 165 PIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFG 219 (393)
T ss_pred CCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999998887665
No 16
>KOG0499|consensus
Probab=99.00 E-value=6.8e-09 Score=100.78 Aligned_cols=139 Identities=21% Similarity=0.202 Sum_probs=91.4
Q ss_pred eehhhHHhHH-HHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhH
Q psy1611 4 KNLIVVVASL-IVLTIGSNGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVF-IHRQELITTLYIGFLGLIFSSY 81 (330)
Q Consensus 4 iDll~~iP~~-l~~~~~~~~~~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~-~~~~~l~~~l~i~~l~~i~~s~ 81 (330)
+|+++++|+. +.+.+|.+- ++|+-|+++...++.....|.+.+. .+.-+.+..+.-++..+++-||
T Consensus 312 lDllsiLPldllY~~~G~~p------------~wR~~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinac 379 (815)
T KOG0499|consen 312 LDLLSILPLDLLYLFFGFNP------------MWRANRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINAC 379 (815)
T ss_pred hhHHhhhhHHHHHHHhccch------------hhhhhhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHH
Confidence 6999999994 444555542 2245555665555555555544332 1122223233233345666676
Q ss_pred HhhheeeCC----CccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 82 FVYLAEKDE----KNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLL 157 (330)
Q Consensus 82 ~~~~~e~~~----~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~~l 157 (330)
++|.+-... +.-.+++.. ..|+.++||++-|+|||| |...|+|..+.+|..+-.+.|+++|++.+|-|-+.+
T Consensus 380 vYY~~SayqglG~~rWVydg~G---n~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi 455 (815)
T KOG0499|consen 380 VYYWASAYQGLGTTRWVYDGEG---NEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVI 455 (815)
T ss_pred HHHHHHhhcccccceeEEcCCC---CceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766653211 111222322 579999999999999999 899999999999999999999999999999887755
Q ss_pred H
Q psy1611 158 E 158 (330)
Q Consensus 158 ~ 158 (330)
.
T Consensus 456 ~ 456 (815)
T KOG0499|consen 456 G 456 (815)
T ss_pred h
Confidence 4
No 17
>KOG4404|consensus
Probab=99.00 E-value=1.4e-09 Score=98.79 Aligned_cols=73 Identities=19% Similarity=0.210 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccC--------CchhhHHHHHHHH
Q psy1611 69 LYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQ--------TWMGKIVASCFSV 140 (330)
Q Consensus 69 l~i~~l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~--------t~~gri~~~~~~l 140 (330)
..+.++.+..++..+.-+|+ |+|+||+|++++|+||||+||.++- .+.-+.+..++++
T Consensus 165 ~~~~~~~i~~gaa~fs~~E~--------------Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL 230 (350)
T KOG4404|consen 165 FTACILLICCGAAMFSSVEG--------------WSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFIL 230 (350)
T ss_pred HHHHHHHHHhhHHHhhcccC--------------cchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHH
Confidence 33344445556666777776 9999999999999999999999984 3466778889999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1611 141 FAISFFALPAVRIEN 155 (330)
Q Consensus 141 ~Gv~~~a~~ig~i~~ 155 (330)
+|+.+++..++.++=
T Consensus 231 ~Gl~vi~a~~NllvL 245 (350)
T KOG4404|consen 231 LGLCVIYALLNLLVL 245 (350)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988887775554
No 18
>KOG2301|consensus
Probab=98.72 E-value=1.4e-07 Score=102.92 Aligned_cols=152 Identities=15% Similarity=0.118 Sum_probs=113.6
Q ss_pred CeeeehhhHHhHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1611 1 MSEKNLIVVVASLIVLTIGSNGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSS 80 (330)
Q Consensus 1 ~~viDll~~iP~~l~~~~~~~~~~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s 80 (330)
+|++|+++++-.++.+. ......++++|.+|++|++|+.+.+++++.+...+..+.+.+..++++++++++++|
T Consensus 507 ~n~fD~~iv~l~~~~~~------~~~~~g~svLr~frllRIfkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa 580 (1592)
T KOG2301|consen 507 WNIFDLIIVLLSLLELL------LKNVYGLSVLRSFRLLRIFKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIFIFIFA 580 (1592)
T ss_pred cchheEEEEehhhHHhc------ccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 58999998882222222 223446889999999999999999999999999999999999999888888777777
Q ss_pred H-HhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCC------ccCCchhhHHHHHHHHHH-HHHHHHHHHH
Q psy1611 81 Y-FVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDA------VPQTWMGKIVASCFSVFA-ISFFALPAVR 152 (330)
Q Consensus 81 ~-~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi------~P~t~~gri~~~~~~l~G-v~~~a~~ig~ 152 (330)
. ++.++++..++. .... -+|.+++.|+-+.+. +|+-+.-|+ +-.++.-.++.+.++++| ..+.+++++.
T Consensus 581 ~~gmqlFg~~~n~~-~~~~-~~~~~fp~sfl~vFq-lt~e~W~evm~~~~~~~~~~~~~i~Fi~~~l~gn~vvLnlFlAl 657 (1592)
T KOG2301|consen 581 AIGMQLFGGVYNLH-CDIH-WHFTDFPHSFLSVFQ-ITCEEWTDVMWDCMEAAGQPLCAIYFIAYFLFGNLVVLNLFLAL 657 (1592)
T ss_pred HhhHHhhCcccCCC-CCCc-cchhhCHHHHHHHHH-HcCCchHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5 566776666554 2222 478889999998888 665443322 113455677788888888 8889999999
Q ss_pred HHHHHHHHH
Q psy1611 153 IENLLEFEV 161 (330)
Q Consensus 153 i~~~l~~~~ 161 (330)
+.++++...
T Consensus 658 ~~~n~~~~e 666 (1592)
T KOG2301|consen 658 ILDNFESDE 666 (1592)
T ss_pred HHhhchhhh
Confidence 998887444
No 19
>KOG1418|consensus
Probab=98.71 E-value=1.6e-07 Score=90.86 Aligned_cols=58 Identities=26% Similarity=0.516 Sum_probs=54.5
Q ss_pred CCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 101 SFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLE 158 (330)
Q Consensus 101 ~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~~l~ 158 (330)
..++|.+|+|++++++||||||+++|.|..||++++++.++|+.++.++++.++..+.
T Consensus 112 ~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~ 169 (433)
T KOG1418|consen 112 QQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLA 169 (433)
T ss_pred cceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4489999999999999999999999999999999999999999999999998888665
No 20
>KOG2302|consensus
Probab=98.66 E-value=1.1e-06 Score=89.72 Aligned_cols=158 Identities=16% Similarity=0.164 Sum_probs=102.2
Q ss_pred eeeehhhHHhH--HHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 2 SEKNLIVVVAS--LIVLTIGSNGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFS 79 (330)
Q Consensus 2 ~viDll~~iP~--~l~~~~~~~~~~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~ 79 (330)
|++|.+.+.-+ .+++...+.+......++|+||+||-+|.+|.+.+.+.+++....+-.+.+.+.-++++++.++++|
T Consensus 1195 N~LDgflv~vsviDilvs~asa~g~kILgVlrvLRlLRtlRpLRviSra~glklVveTL~sSLkpIgnIvliccaffiiF 1274 (1956)
T KOG2302|consen 1195 NVLDGFLVAVSVIDILVSQASAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKPIGNIVLICCAFFIIF 1274 (1956)
T ss_pred HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHhhcccHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 67777665554 3344455555566778888999999999999999999999999999999999988888888877777
Q ss_pred hHH-hhheeeCC-------CccccCC------------CCCCCCcchhhHHhhhheeeccccC------------CCccC
Q psy1611 80 SYF-VYLAEKDE-------KNEVVGG------------KPNSFNTYADALWWGVITVTTIGYG------------DAVPQ 127 (330)
Q Consensus 80 s~~-~~~~e~~~-------~~~~~~~------------~~~~f~~y~~aly~~~iTlTTVGYG------------Di~P~ 127 (330)
+.+ ..++.+.. .....+. ...+|.+..+|+.--++..|--|+- |.-|.
T Consensus 1275 gilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlgqalmSLFvLaSkDgWv~ImyDgldavavdqqPI 1354 (1956)
T KOG2302|consen 1275 GILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLGQALMSLFVLASKDGWVNIMYDGLDAVAVDQQPI 1354 (1956)
T ss_pred HHHHHHHhcccceeccccccccccchhhhcccchhhhhhhcccchHHHHHHHHHHHhcccchhhhhccchhhceeeeecc
Confidence 754 44443211 1100010 1235667766665323322222222 34454
Q ss_pred C----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 128 T----WMGKIVASCFSVFAISFFALPAVRIENLLEF 159 (330)
Q Consensus 128 t----~~gri~~~~~~l~Gv~~~a~~ig~i~~~l~~ 159 (330)
. |.=-.|.+++.++...++++++|.+..++-+
T Consensus 1355 ~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhK 1390 (1956)
T KOG2302|consen 1355 LNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHK 1390 (1956)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3344455556677788889999999988763
No 21
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=98.63 E-value=1.5e-07 Score=88.66 Aligned_cols=99 Identities=18% Similarity=0.218 Sum_probs=65.8
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhHHhhheee---CCCc----cccCCCCCCCCcchhhHHhhhheeeccccCC--CccCCc
Q psy1611 60 IHRQELITTLY-IGFLGLIFSSYFVYLAEK---DEKN----EVVGGKPNSFNTYADALWWGVITVTTIGYGD--AVPQTW 129 (330)
Q Consensus 60 ~~~~~l~~~l~-i~~l~~i~~s~~~~~~e~---~~~~----~~~~~~~~~f~~y~~aly~~~iTlTTVGYGD--i~P~t~ 129 (330)
..|+.++.++. ..++.+++|+.++|++.. +... ....+.-.+..+|.+||+|++.|+||||||. ++|..+
T Consensus 32 ~~W~~~l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~ 111 (336)
T PF01007_consen 32 MSWRWFLLLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECP 111 (336)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHHHHHHHHTT---SSSEB-CSHH
T ss_pred CCeeeeeehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhheeEEEEEEEEeccCCcccCCCcc
Confidence 34444333333 334566777777776432 1111 1111111345789999999999999999999 678889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 130 MGKIVASCFSVFAISFFALPAVRIENLLE 158 (330)
Q Consensus 130 ~gri~~~~~~l~Gv~~~a~~ig~i~~~l~ 158 (330)
.+-+++++-+++|+++.++.+|.+-+.++
T Consensus 112 ~a~~l~~~q~~~g~l~~a~~~Glvfar~s 140 (336)
T PF01007_consen 112 YAIFLVTIQSLVGLLLDAFMTGLVFARFS 140 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999776
No 22
>KOG1418|consensus
Probab=98.21 E-value=1.9e-07 Score=90.36 Aligned_cols=49 Identities=33% Similarity=0.685 Sum_probs=44.6
Q ss_pred CcchhhHHhhhheeeccccCCCccCCchhh--------HHHHHHHHHHHHHHHHHHH
Q psy1611 103 NTYADALWWGVITVTTIGYGDAVPQTWMGK--------IVASCFSVFAISFFALPAV 151 (330)
Q Consensus 103 ~~y~~aly~~~iTlTTVGYGDi~P~t~~gr--------i~~~~~~l~Gv~~~a~~ig 151 (330)
++|.+|+||+++|+|||||||++|.+..++ .+..++.++|...++....
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 297 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVLL 297 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHhh
Confidence 889999999999999999999999999977 6888899999888887774
No 23
>KOG4404|consensus
Probab=98.20 E-value=1.9e-06 Score=78.64 Aligned_cols=53 Identities=26% Similarity=0.446 Sum_probs=47.7
Q ss_pred CcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 103 NTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIEN 155 (330)
Q Consensus 103 ~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~ 155 (330)
|.|.-||||+.+-+||||||--+|.|..||+|+++..++|+.+--++...+.+
T Consensus 79 WkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gE 131 (350)
T KOG4404|consen 79 WKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGE 131 (350)
T ss_pred cccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHH
Confidence 68899999999999999999999999999999999999998776666666555
No 24
>PLN03223 Polycystin cation channel protein; Provisional
Probab=98.09 E-value=0.00015 Score=77.28 Aligned_cols=119 Identities=11% Similarity=0.041 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHh
Q psy1611 32 GIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWW 111 (330)
Q Consensus 32 ~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~ 111 (330)
++=|+.++|++|+.|+.+.+..+...+....+.+..++++.+++++.++.+.+++.+... ..|.++..|++-
T Consensus 1297 IlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~v--------e~FSTf~sSL~T 1368 (1634)
T PLN03223 1297 INIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNAS--------VHFSDMTDSINS 1368 (1634)
T ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------hhhcCHHHHHHH
Confidence 456788888888889999999999999999999999888888888888877777776543 368889888876
Q ss_pred hhheeeccccCC-----Ccc----CCchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy1611 112 GVITVTTIGYGD-----AVP----QTWMGKIVASCFSV-FAISFFALPAVRIENLLEFE 160 (330)
Q Consensus 112 ~~iTlTTVGYGD-----i~P----~t~~gri~~~~~~l-~Gv~~~a~~ig~i~~~l~~~ 160 (330)
.+..++ |-.| +.+ ..+.|-+|.+.+++ +.++++++++|+|.+.+++.
T Consensus 1369 LFqMLL--GDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1369 LFENLL--GDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred HHHHHH--cCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665553 3222 111 24567777766655 45789999999999988854
No 25
>KOG2301|consensus
Probab=98.01 E-value=5.4e-05 Score=83.29 Aligned_cols=155 Identities=15% Similarity=0.130 Sum_probs=101.5
Q ss_pred eeeehhhHHhHHHHHHhcCCCh--hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 2 SEKNLIVVVASLIVLTIGSNGQ--IFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFS 79 (330)
Q Consensus 2 ~viDll~~iP~~l~~~~~~~~~--~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~ 79 (330)
|+||+++++-+++-........ -......+++|++|+.|++|+.+...+.+.|...+-.+.+.+..+.++.+++.+++
T Consensus 1222 N~FDfvvvIlSIv~~~ls~~~~~~~~~~~~~~~~rl~rV~R~l~Li~~~~~ir~LL~t~~~Sl~al~~i~lLl~ll~fiY 1301 (1592)
T KOG2301|consen 1222 NVFDFVVTILSIVGIVLSEAVEKYESSPTLLRFLRLFRVGRFLRLIPQAKTIRTLLLTLMMSLPALFFIILLLFLLFFIY 1301 (1592)
T ss_pred hheEeeeeeHhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 8999999888755443211111 12344688999999999999999999999999999999988888777777777776
Q ss_pred hHH-hhheeeCCCccccCCCCCCCCcchhhHHhhhheee-----------ccccC--CC---ccCCchh------hHHHH
Q psy1611 80 SYF-VYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVT-----------TIGYG--DA---VPQTWMG------KIVAS 136 (330)
Q Consensus 80 s~~-~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlT-----------TVGYG--Di---~P~t~~g------ri~~~ 136 (330)
|++ +..+..-.-+ .. ....+|.++..|+---+...| +.+.. |. .|.++.| -.|+.
T Consensus 1302 Ai~Gmq~Fg~Vkl~-~i-~~~~NF~tf~~a~i~LFr~~Tge~W~~im~~~l~s~p~Cdp~~~~~~~dCGn~~~Ai~YF~S 1379 (1592)
T KOG2301|consen 1302 AIIGMQLFGYVKLG-GI-NDHNNFRTFPNSMVVLFRCATGEGWNDIMDDCLNSKPFCDPDDGNNGTDCGNPTVAIIYFVS 1379 (1592)
T ss_pred HHHHHHHhhheecc-cc-CCCcccccchhheeeeeehhhhhhHHHHHHHHhcCCCCCCCCCCCcccccCCCCcceehhhH
Confidence 654 3333222211 11 223578888877643222222 33322 21 1111233 45666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1611 137 CFSVFAISFFALPAVRIENLLE 158 (330)
Q Consensus 137 ~~~l~Gv~~~a~~ig~i~~~l~ 158 (330)
.++++.+++.++++|+|-++++
T Consensus 1380 f~iIs~~IvvNLfVAVImeNFs 1401 (1592)
T KOG2301|consen 1380 WILISSYIVVNLFVAVILENFS 1401 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 7778889999999999998776
No 26
>KOG3193|consensus
Probab=97.81 E-value=2.2e-05 Score=76.12 Aligned_cols=44 Identities=20% Similarity=0.527 Sum_probs=37.5
Q ss_pred CcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHH
Q psy1611 103 NTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFF 146 (330)
Q Consensus 103 ~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~ 146 (330)
-+.++|+|+.++|.+||||||.+|--|...++.++++.++.+++
T Consensus 216 i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~i 259 (1087)
T KOG3193|consen 216 IDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLI 259 (1087)
T ss_pred eeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhcc
Confidence 46788999999999999999999999999998887766555543
No 27
>KOG3827|consensus
Probab=97.68 E-value=0.00026 Score=66.42 Aligned_cols=86 Identities=16% Similarity=0.136 Sum_probs=63.0
Q ss_pred HHHHHHHhHHhhheeeCCCccccC-------CCCCCCCcchhhHHhhhheeeccccCCCccCC--chhhHHHHHHHHHHH
Q psy1611 73 FLGLIFSSYFVYLAEKDEKNEVVG-------GKPNSFNTYADALWWGVITVTTIGYGDAVPQT--WMGKIVASCFSVFAI 143 (330)
Q Consensus 73 ~l~~i~~s~~~~~~e~~~~~~~~~-------~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t--~~gri~~~~~~l~Gv 143 (330)
++.|.+||.++|++...+.+-... +.-.+..++..||.|++-|=||||||-.++.. +.+-+..++-+++|+
T Consensus 74 ~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ 153 (400)
T KOG3827|consen 74 VLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGV 153 (400)
T ss_pred HHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHH
Confidence 456888888888774433222111 12246678999999999999999999998765 445555556679999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1611 144 SFFALPAVRIENLLE 158 (330)
Q Consensus 144 ~~~a~~ig~i~~~l~ 158 (330)
++=++++|.+.+.++
T Consensus 154 ii~afm~G~i~aKia 168 (400)
T KOG3827|consen 154 IINAFMVGAIFAKIA 168 (400)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999888665
No 28
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=97.18 E-value=0.00052 Score=56.57 Aligned_cols=91 Identities=15% Similarity=0.308 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhHHhhheeeCCCccccC----CCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHH
Q psy1611 67 TTLYIGFLGLIFSSYFVYLAEKDEKNEVVG----GKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFA 142 (330)
Q Consensus 67 ~~l~i~~l~~i~~s~~~~~~e~~~~~~~~~----~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~G 142 (330)
.+|..+++.+++.++++|++++-.+..... .......+..+++|+++.+++. +-++..|+++.+|++.++|.+++
T Consensus 3 ~vW~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~ 81 (148)
T PF00060_consen 3 SVWLLILLSILLVSLVLWLFERFSPYEWRKNQSSPPRRWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFS 81 (148)
T ss_dssp HHHHHHHHHHHHHHTTGGGT------------------HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHH
Confidence 355666666677777777777643322111 1112335678899988888876 55789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1611 143 ISFFALPAVRIENLLE 158 (330)
Q Consensus 143 v~~~a~~ig~i~~~l~ 158 (330)
+.+.+...|.+++.|+
T Consensus 82 lil~~~Yta~L~s~Lt 97 (148)
T PF00060_consen 82 LILIASYTANLTSFLT 97 (148)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999776
No 29
>KOG3599|consensus
Probab=97.14 E-value=0.021 Score=59.71 Aligned_cols=118 Identities=15% Similarity=0.182 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHh
Q psy1611 32 GIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWW 111 (330)
Q Consensus 32 ~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~ 111 (330)
++=+|=.+|++|+.|+..+++.+.+.+...++++..+.++.+++++.++.+.+++.+..- .+|.++.+|+-
T Consensus 559 ~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v--------~~f~~f~~s~~- 629 (798)
T KOG3599|consen 559 FLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQV--------SDFRTFVASIV- 629 (798)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--------CChHHHHHHHH-
Confidence 345666788999999999999999999999999998888887777888888888776432 25677777653
Q ss_pred hhheeeccccCCCccC-----C-chhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy1611 112 GVITVTTIGYGDAVPQ-----T-WMGKIVASCFSVFA-ISFFALPAVRIENLLEFEV 161 (330)
Q Consensus 112 ~~iTlTTVGYGDi~P~-----t-~~gri~~~~~~l~G-v~~~a~~ig~i~~~l~~~~ 161 (330)
|+.-.-.||..|. + +.|-++...++++. .++++++.++|-...++..
T Consensus 630 ---t~~~~~~G~~~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk 683 (798)
T KOG3599|consen 630 ---TLLRYILGDFCPAEIFHANRILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVK 683 (798)
T ss_pred ---HHHHHHhccCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 3332333566554 2 44555444444444 6678888888888766433
No 30
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=97.13 E-value=0.0071 Score=59.18 Aligned_cols=119 Identities=17% Similarity=0.186 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHh
Q psy1611 32 GIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWW 111 (330)
Q Consensus 32 ~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~ 111 (330)
++=++-.+|++|+.|..+.+..+..++....+++.....+.++++..++...+++.+...+ .|.++..|+.-
T Consensus 302 ~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~~--------~f~s~~~s~~t 373 (425)
T PF08016_consen 302 FLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYSE--------DFSSFSSSLVT 373 (425)
T ss_pred HHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc--------ccCCHHHHHHH
Confidence 3444556677777777778888889999999999998888888888888888887764432 67888888865
Q ss_pred hhhee-eccccCCC-ccCCchhhHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy1611 112 GVITV-TTIGYGDA-VPQTWMGKIVASCFSVFA-ISFFALPAVRIENLLE 158 (330)
Q Consensus 112 ~~iTl-TTVGYGDi-~P~t~~gri~~~~~~l~G-v~~~a~~ig~i~~~l~ 158 (330)
.+..+ -..+|+|+ .+....|.++...++++. +++++++++++.+.++
T Consensus 374 l~~~l~g~~~~~~~~~~~~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~ 423 (425)
T PF08016_consen 374 LFRMLLGDFDYDELYQANPVLGPLFFFSFMFLVFFILLNLFIAIINDSYE 423 (425)
T ss_pred HHHHhcCCCchhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 54433 23445555 355677888777776655 5567888888877554
No 31
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=97.01 E-value=0.017 Score=60.63 Aligned_cols=122 Identities=14% Similarity=0.160 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHhhheeeCCCcc----ccC-------CCCC
Q psy1611 33 IRFLQILRMLHVDRQGGTWRLLGSVVFIHRQ-ELITTLYIGFLGLIFSSYFVYLAEKDEKNE----VVG-------GKPN 100 (330)
Q Consensus 33 lRllRllR~~rl~r~~~~~~~l~~~l~~~~~-~l~~~l~i~~l~~i~~s~~~~~~e~~~~~~----~~~-------~~~~ 100 (330)
+.++|++.+++..+..+. +..++..... .+..++++.+++++.||..++.+.....+. ..+ ....
T Consensus 478 l~~~rll~~~~~~~~lGp---~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (743)
T TIGR00870 478 LSWLNLLYIFRGNQHLGP---LQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHARSCEKQGN 554 (743)
T ss_pred HHHHHHHHHHhhchhcCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccc
Confidence 444444444444444333 3344555555 677777777667776776655553321111 000 0113
Q ss_pred CCCcchhhHHhhhheeeccccCCC-----ccCCchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy1611 101 SFNTYADALWWGVITVTTIGYGDA-----VPQTWMGKIVASCFSVFA-ISFFALPAVRIENLLEF 159 (330)
Q Consensus 101 ~f~~y~~aly~~~iTlTTVGYGDi-----~P~t~~gri~~~~~~l~G-v~~~a~~ig~i~~~l~~ 159 (330)
.|.++..++.-.+. ++.|.||. ....+.|.++.++++++. ++++++++|.+.+.+++
T Consensus 555 ~f~~~~~s~~~lf~--~~~G~~~~~~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~ 617 (743)
T TIGR00870 555 AYSTLFETSQELFW--AIIGLGDLLANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQL 617 (743)
T ss_pred cccCHHHHHHHHHH--HHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45555444432221 24565554 223567888887777666 88899999999998874
No 32
>KOG2302|consensus
Probab=96.90 E-value=0.0005 Score=71.04 Aligned_cols=152 Identities=16% Similarity=0.135 Sum_probs=91.1
Q ss_pred CeeeehhhHHhHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1611 1 MSEKNLIVVVASLIVLTIGSNGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSS 80 (330)
Q Consensus 1 ~~viDll~~iP~~l~~~~~~~~~~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s 80 (330)
+|++|-++++-+...+.....| .+.++|-+|++|++++.|+.+.++.-.-++...+....+...++.+++.+++
T Consensus 685 ynifdgiiv~is~wEiVgqq~G------glsvlrtFrllrvlkLvrf~palqrqlvvl~ktmdnvAtfctllmLfififs 758 (1956)
T KOG2302|consen 685 YNIFDGIIVAISHWEIVGQQDG------GLSVLRTFRLLRVLKLVRFSPALQRQLVVLMKTMDNVATFCTLLMLFIFIFS 758 (1956)
T ss_pred cccCCCeEEEEEeeEeecccCC------CcCCCcHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence 3666766665554333222222 3557888889999999999888876655555555444555555555555666
Q ss_pred HHh-hheeeCCCccccCCCCCCCCcchhhHHhhhheeeccc---------cCCCccCCchhhHHHHHHHHHH-HHHHHHH
Q psy1611 81 YFV-YLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIG---------YGDAVPQTWMGKIVASCFSVFA-ISFFALP 149 (330)
Q Consensus 81 ~~~-~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVG---------YGDi~P~t~~gri~~~~~~l~G-v~~~a~~ 149 (330)
+.. ..+.-+...+...+....=..=.+++.|+++|.--+| |..+.-.+...-.+.+..|-+| +..|++.
T Consensus 759 Ilgmh~fGckfs~e~dtGdt~pDrknfdsllwaivTvfqilTqedwn~vLyngmastSswa~lyfvAlmtfGnYvlfnll 838 (1956)
T KOG2302|consen 759 ILGMHSFGCKFSLETDTGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSSWAPLYFVALMTFGNYVLFNLL 838 (1956)
T ss_pred hhhhhhhccccccccccCCcCCCccccchHHHHHHHHHhhhcccccchhhhcCccccCCcchhHHHHhhhccceeeeccc
Confidence 543 3322211111000111001122567788887764333 6666666666777888888888 8899999
Q ss_pred HHHHHHHHH
Q psy1611 150 AVRIENLLE 158 (330)
Q Consensus 150 ig~i~~~l~ 158 (330)
+++.++.++
T Consensus 839 vailvEgFq 847 (1956)
T KOG2302|consen 839 VAILVEGFQ 847 (1956)
T ss_pred hhhhhhhcc
Confidence 999998776
No 33
>KOG1053|consensus
Probab=96.32 E-value=0.053 Score=56.18 Aligned_cols=139 Identities=19% Similarity=0.342 Sum_probs=86.3
Q ss_pred HHHHHHHH-HHHHHhHHhhheeeCC----CccccCCCCC--CCCcchhhHH--hhhheeeccccCCCccCCchhhHHHHH
Q psy1611 67 TTLYIGFL-GLIFSSYFVYLAEKDE----KNEVVGGKPN--SFNTYADALW--WGVITVTTIGYGDAVPQTWMGKIVASC 137 (330)
Q Consensus 67 ~~l~i~~l-~~i~~s~~~~~~e~~~----~~~~~~~~~~--~f~~y~~aly--~~~iTlTTVGYGDi~P~t~~gri~~~~ 137 (330)
.+|.++|+ +++..++.++++|... |.....++.+ .--++..|+| |+++-=-||- --.|+.+.+|+.+.+
T Consensus 565 svWVmmFVm~livaai~vFlFEy~SPvgyn~~l~~gkkpggp~FtigkaiwllwaLvFnnsVp--v~nPKgtTskiMv~V 642 (1258)
T KOG1053|consen 565 SVWVMMFVMCLIVAAITVFLFEYFSPVGYNRNLANGKKPGGPSFTIGKAIWLLWALVFNNSVP--VENPKGTTSKIMVLV 642 (1258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCCCcceehhhHHHHHHHHHhCCCcC--CCCCCchHHHHHHHH
Confidence 34444443 4455566666666542 2221222211 1135677888 7776544443 235789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------------------------hHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy1611 138 FSVFAISFFALPAVRIENLLEFEVRLRSL-------------------------TDVHRNAIRAIRKIKYFVARRKFQQA 192 (330)
Q Consensus 138 ~~l~Gv~~~a~~ig~i~~~l~~~~~~~~l-------------------------~~~~~~~i~~i~~~~~~l~~~k~~~~ 192 (330)
|.+++++|.|..++++++.+.++....++ ....++..+....|..|+.+.
T Consensus 643 WAfFavifLAsYTANLAAfMIqE~~~d~vSGlsD~KfqrP~dq~PpFRFGTVpngSTE~niR~Nyp~MHeYM~ky----- 717 (1258)
T KOG1053|consen 643 WAFFAVIFLASYTANLAAFMIQEEYYDTVSGLSDPKFQRPHDQYPPFRFGTVPNGSTERNIRSNYPEMHEYMVKY----- 717 (1258)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCcccccCccccCCCcccccCCCCchhhhHHhccHHHHHHHHHh-----
Confidence 99999999999999999866532211111 112334444556677777753
Q ss_pred cCCccHHHHHHHHhccchhhH
Q psy1611 193 RKPYDVRDVIEQYSQGHLNMM 213 (330)
Q Consensus 193 ~~~~~v~d~~e~~~~g~~d~~ 213 (330)
....+.|-++.+..|++|+-
T Consensus 718 -Nq~~v~dal~sLK~gKLDAF 737 (1258)
T KOG1053|consen 718 -NQPGVEDALESLKNGKLDAF 737 (1258)
T ss_pred -ccCchHHHHHHHhcccchhH
Confidence 34578888899998988864
No 34
>KOG4440|consensus
Probab=94.78 E-value=0.042 Score=54.82 Aligned_cols=92 Identities=14% Similarity=0.268 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHhHHhhheeeCCCccccC-----CCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHH
Q psy1611 66 ITTLYIGFLGLIFSSYFVYLAEKDEKNEVVG-----GKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSV 140 (330)
Q Consensus 66 ~~~l~i~~l~~i~~s~~~~~~e~~~~~~~~~-----~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l 140 (330)
-++|.++++..++.+..+|+.++.....-+. .....--++..|+||+--.+..-|-|+-+|++-..|++.++|.=
T Consensus 570 stLW~lv~~SVhvVal~lYlLDrfSPFgRFk~~ds~~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaG 649 (993)
T KOG4440|consen 570 STLWLLVGLSVHVVALMLYLLDRFSPFGRFKVNDSEEEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAG 649 (993)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccceeeccCccchhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhh
Confidence 4667777888888999999887654432111 11112346888999888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1611 141 FAISFFALPAVRIENLL 157 (330)
Q Consensus 141 ~Gv~~~a~~ig~i~~~l 157 (330)
+.++++|..++++++.|
T Consensus 650 FaMIiVASYTANLAAFL 666 (993)
T KOG4440|consen 650 FAMIIVASYTANLAAFL 666 (993)
T ss_pred hheeeehhhhhhhhhhe
Confidence 99999999999888854
No 35
>KOG3676|consensus
Probab=94.69 E-value=0.96 Score=46.77 Aligned_cols=95 Identities=22% Similarity=0.196 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHhHHhhhee-eCCCccccCCC---CCCCCcchhhHHhhhhee--eccccCCCcc--CC---chhhH
Q psy1611 65 LITTLYIGFLGLIFSSYFVYLAE-KDEKNEVVGGK---PNSFNTYADALWWGVITV--TTIGYGDAVP--QT---WMGKI 133 (330)
Q Consensus 65 l~~~l~i~~l~~i~~s~~~~~~e-~~~~~~~~~~~---~~~f~~y~~aly~~~iTl--TTVGYGDi~P--~t---~~gri 133 (330)
+..++++..++++=||-.+|.+. ...++..++++ ++.-.+..+++.-.+.|+ .|+||||... .+ +.+++
T Consensus 543 L~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~ki 622 (782)
T KOG3676|consen 543 LFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKI 622 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHH
Confidence 44444444444444454444443 33333322221 112234455566556666 6999999964 34 67888
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy1611 134 VASCFSVFA-ISFFALPAVRIENLLEF 159 (330)
Q Consensus 134 ~~~~~~l~G-v~~~a~~ig~i~~~l~~ 159 (330)
+.+++|++- +.++++.||.|++..+.
T Consensus 623 lfv~y~ilv~ILllNMLIAMMg~Ty~~ 649 (782)
T KOG3676|consen 623 LFVAYMILVTILLLNMLIAMMGNTYET 649 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 777777665 88999999999996663
No 36
>KOG1052|consensus
Probab=93.01 E-value=0.25 Score=51.15 Aligned_cols=90 Identities=13% Similarity=0.326 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHhHHhhheeeCCCccccCCC--CCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHH
Q psy1611 67 TTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGK--PNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAIS 144 (330)
Q Consensus 67 ~~l~i~~l~~i~~s~~~~~~e~~~~~~~~~~~--~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~ 144 (330)
.+|+.+++.+++.++++|+.++-.+.++ .+. ...+.+...++|.++.++..-| ++..|.+..+|++..+|.+++.+
T Consensus 343 ~vW~~i~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~p~~~~~Rll~~~w~~~~li 420 (656)
T KOG1052|consen 343 EVWLLILASLLLVGLLLWILERLSPYEL-PPRQIVTSLFSLLNCLWLTVGSLLQQG-SDEIPRSLSTRLLLGAWWLFVLI 420 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccC-CccccceeEeecccchhhhhHHHhccC-CCccccchhhhHHHHHHHHHHHH
Confidence 3455555666667777777777544443 111 1223445556777777777777 45999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1611 145 FFALPAVRIENLLE 158 (330)
Q Consensus 145 ~~a~~ig~i~~~l~ 158 (330)
+.+...|++++.|+
T Consensus 421 l~ssYTa~L~a~Lt 434 (656)
T KOG1052|consen 421 LISSYTANLTAFLT 434 (656)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999876
No 37
>KOG1054|consensus
Probab=91.59 E-value=0.094 Score=52.16 Aligned_cols=54 Identities=19% Similarity=0.413 Sum_probs=48.5
Q ss_pred cchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 104 TYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLE 158 (330)
Q Consensus 104 ~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~~l~ 158 (330)
+..+|+||++....-=| -||.|++..||+...+|-++.+++++..++++++.|+
T Consensus 595 gifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 595 GIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred hhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 56789999998887778 4999999999999999999999999999999988776
No 38
>KOG3609|consensus
Probab=85.37 E-value=10 Score=39.72 Aligned_cols=129 Identities=16% Similarity=0.216 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----hhheeeCCCcc--ccCCCCCCCCc
Q psy1611 32 GIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYF-----VYLAEKDEKNE--VVGGKPNSFNT 104 (330)
Q Consensus 32 ~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s~~-----~~~~e~~~~~~--~~~~~~~~f~~ 104 (330)
++-++|++-++.+-...+-|+ -.+......+..++++..+++..|+++ .|+.+...+.. ....+.+.|.+
T Consensus 474 V~S~lrl~~i~t~n~~lGPlq---ISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~~~~fst 550 (822)
T KOG3609|consen 474 VLSFLKLFYIFTMNPSLGPLQ---ISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKTTDSFST 550 (822)
T ss_pred HHHHHHHHHHhhccccccchh---hhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhcccccccccccccccc
Confidence 455555555555544444443 233344445555555555555555443 33333332221 11111224555
Q ss_pred ch---hhHHhhhheeeccccCCC----ccCCchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Q psy1611 105 YA---DALWWGVITVTTIGYGDA----VPQTWMGKIVASCFSVFA-ISFFALPAVRIENLLEFEVRL 163 (330)
Q Consensus 105 y~---~aly~~~iTlTTVGYGDi----~P~t~~gri~~~~~~l~G-v~~~a~~ig~i~~~l~~~~~~ 163 (330)
.. .+++|++-+++-++--++ .-..+.|.+...+..++- +.+.++.+|.|.+.+++....
T Consensus 551 i~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ 617 (822)
T KOG3609|consen 551 IGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDD 617 (822)
T ss_pred HHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhc
Confidence 43 466788865543322111 122455666555555444 668899999999988854433
No 39
>KOG0510|consensus
Probab=84.66 E-value=14 Score=38.71 Aligned_cols=105 Identities=10% Similarity=0.020 Sum_probs=55.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccC
Q psy1611 43 HVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYG 122 (330)
Q Consensus 43 rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYG 122 (330)
-++++.+-+......+....+.++..+.+..++++.|+..+|++-+... .|.+.+-|+--+++-| +|.-
T Consensus 640 Lmi~~~p~~gIfvvM~~~I~ktflk~f~vfs~lliaF~lsFYVll~~~~---------eFs~p~ms~l~t~~MM--iGe~ 708 (929)
T KOG0510|consen 640 LMIGRFPVFGIFVVMLEVILKTFLKSFMVFSILLIAFGLSFYVLLNKSS---------EFSNPFMSKLETFVMM--IGEN 708 (929)
T ss_pred HHHccCCccceehHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCC---------CcCCCcchhhhhHHHh--hccc
Confidence 3333333333333333445556666666666677788888898876432 2344444443333333 2222
Q ss_pred CCc------------c-CCchhh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 123 DAV------------P-QTWMGK-IVASCFSVFAISFFALPAVRIENLLE 158 (330)
Q Consensus 123 Di~------------P-~t~~gr-i~~~~~~l~Gv~~~a~~ig~i~~~l~ 158 (330)
|++ + .+.... +|..+.++.-+.++++.+|..+.-.+
T Consensus 709 dft~~~~~~~~~~~~l~~~v~s~~~f~~F~IfmtIvLMNLLiGLAV~DIq 758 (929)
T KOG0510|consen 709 DFTKVMFTEEFKRNSLAHPVLSFAIFVLFTIFMTIVLMNLLIGLAVGDIQ 758 (929)
T ss_pred ccccccccchhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 222 1 122222 34444556668889999998877554
No 40
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=84.60 E-value=3.4 Score=34.69 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy1611 33 IRFLQILRMLHVDRQGGTWRLLGSVVFIHR 62 (330)
Q Consensus 33 lRllRllR~~rl~r~~~~~~~l~~~l~~~~ 62 (330)
++++|++|.+|+.|..+..+.++..+....
T Consensus 62 ~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~ 91 (200)
T PF00520_consen 62 LRIFRLLRLLRLLRLLRRFRSLRRLLRALI 91 (200)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSHHHHHHHHH
T ss_pred EEEEEeeccccccccccccccccccccccc
Confidence 455556666665555555555444433333
No 41
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=83.85 E-value=0.97 Score=24.20 Aligned_cols=15 Identities=47% Similarity=0.882 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHhhh
Q psy1611 284 AAAMLIQCLWRCFAA 298 (330)
Q Consensus 284 ~~~~~~~~~~~~~~~ 298 (330)
.++++||+.||.|-.
T Consensus 2 ~aai~iQ~~~R~~~~ 16 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLA 16 (21)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 378999999998753
No 42
>KOG3533|consensus
Probab=83.84 E-value=6.4 Score=43.33 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=70.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhheeeCCC---------cc-cc---------------
Q psy1611 41 MLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDEK---------NE-VV--------------- 95 (330)
Q Consensus 41 ~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s~~~~~~e~~~~---------~~-~~--------------- 95 (330)
+|-++.+-.++.+....+...-+.++...++.++.+++||++.|++.++.. +. .+
T Consensus 2398 LFDliyrEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkdDF~leVD~l~n~~~~~~~l~~~~~~~~~~~t 2477 (2706)
T KOG3533|consen 2398 LFDLIYREETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKDDFYLEVDRLENDSAVPSPLSATISSGIPSET 2477 (2706)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhcccceEEEecccccCCCCCCccccccccCCcccc
Confidence 445555556666666666666667776667777777888887776654421 10 00
Q ss_pred --CCC--------------CCCCCcchhhHHhhhheee------ccccCCC--ccCCchhhHHH------HHHHHHHHHH
Q psy1611 96 --GGK--------------PNSFNTYADALWWGVITVT------TIGYGDA--VPQTWMGKIVA------SCFSVFAISF 145 (330)
Q Consensus 96 --~~~--------------~~~f~~y~~aly~~~iTlT------TVGYGDi--~P~t~~gri~~------~~~~l~Gv~~ 145 (330)
+.. ...-..--+.+|.+++|.. .-|-||+ .|..|-+-..+ .+++++=+++
T Consensus 2478 c~~enC~~~~p~~~~~~~~~e~kersCdtLlMCIvt~lnqGLRnGGGiGDvLR~Psk~E~lF~aRV~YDllFffivIiIV 2557 (2706)
T KOG3533|consen 2478 CPSENCPGLQPSEKPDDNDDEKKERSCETLLMCIVTTLNQGLRNGGGIGDVLRNPSKWEDLFIARVAYDLLFFFIVIIIV 2557 (2706)
T ss_pred CCCCCCCCCCCCCCCCcccccchhhhhhHHHHHHHHHHhhhcccCCChhhhhcCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 000 0011123568898888764 5667888 46666443322 2233444677
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1611 146 FALPAVRIENLLEFEV 161 (330)
Q Consensus 146 ~a~~ig~i~~~l~~~~ 161 (330)
.+++.|.|.+.|.+..
T Consensus 2558 LNLIFGVIIDTFaDLR 2573 (2706)
T KOG3533|consen 2558 LNLIFGVIIDTFADLR 2573 (2706)
T ss_pred HHHHHHhhhhhHHHHH
Confidence 8889998888776443
No 43
>KOG3614|consensus
Probab=83.52 E-value=26 Score=38.85 Aligned_cols=30 Identities=13% Similarity=0.368 Sum_probs=18.6
Q ss_pred cCCchhhHHHHHHHHHH-HHHHHHHHHHHHH
Q psy1611 126 PQTWMGKIVASCFSVFA-ISFFALPAVRIEN 155 (330)
Q Consensus 126 P~t~~gri~~~~~~l~G-v~~~a~~ig~i~~ 155 (330)
|.+|.--++.++++++. ++++++.+|....
T Consensus 1010 pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~ 1040 (1381)
T KOG3614|consen 1010 PGSWLTPLLLVIYLLVTNILLVNLLIAMFSY 1040 (1381)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666555 6777777775554
No 44
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=74.01 E-value=5.7 Score=40.10 Aligned_cols=69 Identities=20% Similarity=0.142 Sum_probs=47.9
Q ss_pred HHHHHHhHHhhheeeCCCcc--------ccCCCCCCCCcchhhHHhhhheeeccc-cCCCc-cCCchhhHHHHHHHHHH
Q psy1611 74 LGLIFSSYFVYLAEKDEKNE--------VVGGKPNSFNTYADALWWGVITVTTIG-YGDAV-PQTWMGKIVASCFSVFA 142 (330)
Q Consensus 74 l~~i~~s~~~~~~e~~~~~~--------~~~~~~~~f~~y~~aly~~~iTlTTVG-YGDi~-P~t~~gri~~~~~~l~G 142 (330)
+.++.+..++++.|...|+. ..+++...|.....|+|-+++|-||-| +..+. .-++.+..+.++.|++|
T Consensus 290 iL~i~g~~~~~~~E~~~np~l~~l~~~gn~egKE~RfG~~~salF~svTtrtTaG~fNsm~dsltp~~~lv~m~lMfIG 368 (559)
T PRK05482 290 VLFLAGLAVTMWAELQGNPALAALGIDGNMEGKEVRFGIAASALFAVVTTAASTGAVNAMHDSLTPLGGLVPLLNMQLG 368 (559)
T ss_pred HHHHHHHHHHHHHHccCCcchhhccCCCCcccchhhhhhHHHHHHHHHHhhhhcchHHHHHHhhccHHHHHHHHHHHhC
Confidence 34555666778888765543 223455567778999998888887877 54442 23677888999999987
No 45
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=73.79 E-value=12 Score=37.54 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=36.7
Q ss_pred cchhhHHhhhheeecccc--CCCccCCchh------hHHHHHHHHHH-HHHHHHHHH
Q psy1611 104 TYADALWWGVITVTTIGY--GDAVPQTWMG------KIVASCFSVFA-ISFFALPAV 151 (330)
Q Consensus 104 ~y~~aly~~~iTlTTVGY--GDi~P~t~~g------ri~~~~~~l~G-v~~~a~~ig 151 (330)
++.++++=++.++.|||- |-..+.+..+ |++.++.|++| +..+.+.+.
T Consensus 424 ~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~GRleil~~lv~ 480 (499)
T COG0168 424 PFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIGRLEILTVLVL 480 (499)
T ss_pred cHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhhccchhhHHHh
Confidence 578999988899999996 4444444444 99999999999 666666665
No 46
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=73.70 E-value=2.1 Score=40.77 Aligned_cols=44 Identities=18% Similarity=0.354 Sum_probs=29.1
Q ss_pred chhhHHhhhheeecccc--CCCc-cCCch---hhHHHHHHHHHH-HHHHHH
Q psy1611 105 YADALWWGVITVTTIGY--GDAV-PQTWM---GKIVASCFSVFA-ISFFAL 148 (330)
Q Consensus 105 y~~aly~~~iTlTTVGY--GDi~-P~t~~---gri~~~~~~l~G-v~~~a~ 148 (330)
+.++++=++..+.|||. |... +.+.. +|++.++.|+.| .-.+++
T Consensus 295 ~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~GRle~~~~ 345 (354)
T PF02386_consen 295 FFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLGRLEILPV 345 (354)
T ss_dssp -HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHhCccHHHH
Confidence 68899988999999985 4422 23444 999999999999 444444
No 47
>PRK10750 potassium transporter; Provisional
Probab=73.40 E-value=17 Score=36.34 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=36.1
Q ss_pred chhhHHhhhheeecccc--CCC----ccCCchhhHHHHHHHHHH-HHHHHHHHH
Q psy1611 105 YADALWWGVITVTTIGY--GDA----VPQTWMGKIVASCFSVFA-ISFFALPAV 151 (330)
Q Consensus 105 y~~aly~~~iTlTTVGY--GDi----~P~t~~gri~~~~~~l~G-v~~~a~~ig 151 (330)
..+|+--+..++.++|. |.. ..-++.+|++.++.|++| +-++++.+.
T Consensus 422 ~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllGRLEi~tvl~~ 475 (483)
T PRK10750 422 DFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFGRLEVFTLLVL 475 (483)
T ss_pred HHHHHHHHHHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888877788887775 433 456889999999999999 666666554
No 48
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=72.80 E-value=32 Score=34.92 Aligned_cols=53 Identities=6% Similarity=0.003 Sum_probs=42.6
Q ss_pred CcchhhHHhhhheeeccc--cCCCccCCchhhHHHHHHHHHH-HHHHHHHHHHHHH
Q psy1611 103 NTYADALWWGVITVTTIG--YGDAVPQTWMGKIVASCFSVFA-ISFFALPAVRIEN 155 (330)
Q Consensus 103 ~~y~~aly~~~iTlTTVG--YGDi~P~t~~gri~~~~~~l~G-v~~~a~~ig~i~~ 155 (330)
..+.+-+|=.+....|+| +|+++|.|+.+++..++.|++| ++.+....+..++
T Consensus 450 hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~Gpit~~lAlAgs 505 (559)
T PRK05482 450 HGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRFLPIIPVLAIAGS 505 (559)
T ss_pred CCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888887777788888 4668899999999999999999 7666666665444
No 49
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=69.66 E-value=6.9 Score=37.85 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=33.5
Q ss_pred CcchhhHHhhhheeeccccC--CCccCCchhhHHHHHHHHHHHH
Q psy1611 103 NTYADALWWGVITVTTIGYG--DAVPQTWMGKIVASCFSVFAIS 144 (330)
Q Consensus 103 ~~y~~aly~~~iTlTTVGYG--Di~P~t~~gri~~~~~~l~Gv~ 144 (330)
....++.++.+++.+|.||. |..--++..+++.+++|++|.+
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~ 273 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGC 273 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCC
Confidence 56788999999999999984 4444466788999999998854
No 50
>KOG1545|consensus
Probab=68.45 E-value=14 Score=35.22 Aligned_cols=26 Identities=12% Similarity=0.283 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy1611 29 AIRGIRFLQILRMLHVDRQGGTWRLL 54 (330)
Q Consensus 29 ~lr~lRllRllR~~rl~r~~~~~~~l 54 (330)
-+.+||++|+.|++|+.+.+.--+-|
T Consensus 322 SlAILRViRLVRVFRIFKLSRHSkGL 347 (507)
T KOG1545|consen 322 SLAILRVIRLVRVFRIFKLSRHSKGL 347 (507)
T ss_pred hHHHHHHHHHHHHhhheeeccccchH
Confidence 45678888888888887766554333
No 51
>KOG3713|consensus
Probab=66.77 E-value=28 Score=34.41 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHH
Q psy1611 31 RGIRFLQILRMLHVDRQGGTW 51 (330)
Q Consensus 31 r~lRllRllR~~rl~r~~~~~ 51 (330)
.++|++|++|++|+.+..+..
T Consensus 308 ~vvrvlR~lRI~RI~KLaRhS 328 (477)
T KOG3713|consen 308 LVVRVLRVLRILRIFKLARHS 328 (477)
T ss_pred hhHHHHHHHHHHHHHHHHhhh
Confidence 456777777777766665543
No 52
>KOG3684|consensus
Probab=63.12 E-value=69 Score=31.56 Aligned_cols=48 Identities=2% Similarity=-0.187 Sum_probs=25.6
Q ss_pred hhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 111 WGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLE 158 (330)
Q Consensus 111 ~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~~l~ 158 (330)
-++-.+....+++-++-...+....=.+.+++.++=|.+.+.+.+.++
T Consensus 290 nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvis 337 (489)
T KOG3684|consen 290 NSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIA 337 (489)
T ss_pred hhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHH
Confidence 344444555566666655555555555555555555555555555444
No 53
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=57.53 E-value=8.7 Score=21.54 Aligned_cols=16 Identities=44% Similarity=0.808 Sum_probs=13.0
Q ss_pred chHHHHHHHHHHHhhh
Q psy1611 283 PAAAMLIQCLWRCFAA 298 (330)
Q Consensus 283 ~~~~~~~~~~~~~~~~ 298 (330)
..+++.||+.||-|-.
T Consensus 3 ~~aa~~IQa~~Rg~~~ 18 (26)
T smart00015 3 TRAAIIIQAAWRGYLA 18 (26)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3488999999998754
No 54
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=52.60 E-value=4.1 Score=34.29 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=36.1
Q ss_pred CcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHH
Q psy1611 103 NTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFAL 148 (330)
Q Consensus 103 ~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~ 148 (330)
-.+..+.||...+++++|||++.|.+..+.......++.+......
T Consensus 116 ~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 161 (212)
T COG1226 116 LARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGDSV 161 (212)
T ss_pred EEEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccCCchh
Confidence 4677888999999999999999999888877777766666444433
No 55
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=48.50 E-value=1.7e+02 Score=24.99 Aligned_cols=51 Identities=14% Similarity=0.058 Sum_probs=43.3
Q ss_pred CCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHH
Q psy1611 101 SFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAV 151 (330)
Q Consensus 101 ~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig 151 (330)
+-.+|.|=+|++++.-||-.-.|+.+.|..-|-.+..=.+++..|-+.+++
T Consensus 129 ~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 129 WEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 336788999999999999889999999999999988888888777776665
No 56
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=45.69 E-value=87 Score=26.07 Aligned_cols=30 Identities=13% Similarity=0.386 Sum_probs=14.8
Q ss_pred cHHHHHHHHhccchhhHhhHHHHHHHHHhh
Q psy1611 197 DVRDVIEQYSQGHLNMMVRIKELQRRLDQT 226 (330)
Q Consensus 197 ~v~d~~e~~~~g~~d~~~~i~~lq~~ld~~ 226 (330)
++.+.+.++.+...+.....++++++++.+
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l 72 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEEL 72 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544444444444444444443
No 57
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=43.71 E-value=48 Score=35.08 Aligned_cols=63 Identities=13% Similarity=0.045 Sum_probs=36.1
Q ss_pred HhHHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccC--CCccCCchhhHHHHHHHHHHHHH
Q psy1611 79 SSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYG--DAVPQTWMGKIVASCFSVFAISF 145 (330)
Q Consensus 79 ~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYG--Di~P~t~~gri~~~~~~l~Gv~~ 145 (330)
...+++++|-+ ++. ..+ -+.....++|++-++.+ -|-|+. |+.--++...++.+++|.+|..=
T Consensus 598 g~ilf~lLE~n-n~t-l~~-lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~P 662 (800)
T TIGR00934 598 DLILFIILDWG-SSV-VDG-LSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLP 662 (800)
T ss_pred HHHHHHHHhcC-ccc-ccc-CCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCC
Confidence 33455566653 221 111 22345678887766654 556664 22334566788889999888554
No 58
>PRK10750 potassium transporter; Provisional
Probab=42.83 E-value=96 Score=31.04 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=31.0
Q ss_pred CcchhhHHhhhheeeccccCCC---cc--CCchhhHHHHHHHHHHHHHHHHHH
Q psy1611 103 NTYADALWWGVITVTTIGYGDA---VP--QTWMGKIVASCFSVFAISFFALPA 150 (330)
Q Consensus 103 ~~y~~aly~~~iTlTTVGYGDi---~P--~t~~gri~~~~~~l~Gv~~~a~~i 150 (330)
.+..||+..++.|+.|-||.-. .+ .++.-.+..+++|++|..=|.+..
T Consensus 205 m~~fdAi~ha~saisTgGFs~~~~si~~~~~~~i~~v~~~~milgg~~F~l~~ 257 (483)
T PRK10750 205 MDAFDAIGHSFSTIAIGGFSTHDASIGYFDSPTINTIIAIFLLISGCNYGLHF 257 (483)
T ss_pred CcHHHHHHHHHHHHhccCcCCCccccccccCHHHHHHHHHHHHHHHhhHHHHH
Confidence 5679999999999999998221 11 244445666677777754444333
No 59
>COG1422 Predicted membrane protein [Function unknown]
Probab=41.66 E-value=2e+02 Score=25.15 Aligned_cols=13 Identities=8% Similarity=-0.194 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy1611 144 SFFALPAVRIENL 156 (330)
Q Consensus 144 ~~~a~~ig~i~~~ 156 (330)
.+.|.++|...+.
T Consensus 51 lV~avi~gl~~~i 63 (201)
T COG1422 51 LVAAVITGLYITI 63 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 60
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=41.51 E-value=1.1e+02 Score=29.60 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=32.9
Q ss_pred CcchhhHHhhhheeeccccCCCcc------CCchhhHHHHHHHHHHHHHHHHHH
Q psy1611 103 NTYADALWWGVITVTTIGYGDAVP------QTWMGKIVASCFSVFAISFFALPA 150 (330)
Q Consensus 103 ~~y~~aly~~~iTlTTVGYGDi~P------~t~~gri~~~~~~l~Gv~~~a~~i 150 (330)
.++.+|++-++.+++|-|+.-... .++...++.+++|++|-.=|.+..
T Consensus 127 ~~~~~Aif~avSa~~taGFs~~~~~~~~~~~~~~i~~v~~~lm~iGg~gF~v~~ 180 (390)
T TIGR00933 127 MPLFDAIFHSISAFNNGGFSTHSDSSIGYFHDPSVNLVIAFLIILGGLGFTVHY 180 (390)
T ss_pred hHHHHHHHHHHHHHhcCCcCCCCCcchhhccChHHHHHHHHHHHHHhcCHHHHH
Confidence 467999999999999999843322 233456777778888855444443
No 61
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=41.20 E-value=2.5e+02 Score=26.88 Aligned_cols=76 Identities=12% Similarity=0.246 Sum_probs=50.3
Q ss_pred CCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy1611 101 SFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLEFEVRLRSLTDVHRNAIRA 176 (330)
Q Consensus 101 ~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~~l~~~~~~~~l~~~~~~~i~~ 176 (330)
....|.-+|-+++..+-+++-++........-.+++++.+..++.+-+++..+...++-...+++..+...+.++.
T Consensus 97 vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii~~i~~~~~~~i~~ 172 (371)
T PF10011_consen 97 VLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNIIARIEEDARKAIDR 172 (371)
T ss_pred HHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 3456777887888888777755553344445566666677778888888888888776555565665555554443
No 62
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=36.79 E-value=3e+02 Score=27.66 Aligned_cols=46 Identities=9% Similarity=0.139 Sum_probs=31.7
Q ss_pred cchhhHHhhhheeeccccCCCccC-------CchhhHHHHHHHHHHHHHHHHHH
Q psy1611 104 TYADALWWGVITVTTIGYGDAVPQ-------TWMGKIVASCFSVFAISFFALPA 150 (330)
Q Consensus 104 ~y~~aly~~~iTlTTVGYGDi~P~-------t~~gri~~~~~~l~Gv~~~a~~i 150 (330)
+..||++-++.+++|-||- ..+. ++.=.++++++|++|-.=|.+..
T Consensus 198 ~~~dAi~hs~Sa~~ngGFS-~~~~Si~~f~~~~~i~~i~~~liI~GgigF~v~~ 250 (499)
T COG0168 198 PLFDAIFHSMSAFNNGGFS-THDASIGYFNGSPLINLIITILIILGGIGFPVHY 250 (499)
T ss_pred CHHHHHHHHHHHhhcCCCC-CCcchhhhcccChhHHHHHHHHHHHhcCChHHHH
Confidence 4567999999999999984 4432 45566677777887754444433
No 63
>PF02888 CaMBD: Calmodulin binding domain; InterPro: IPR004178 Small-conductance Ca2+-activated K+ channels (SK channels) are independent of voltage and gated solely by intracellular Ca2+. These membrane channels are heteromeric complexes that comprise pore-forming alpha-subunits and the Ca2+-binding protein calmodulin (CaM) []. CaM binds to the SK channel through this the CaM-binding domain (CaMBD), which is located in an intracellular region of the alpha-subunit immediately carboxy-terminal to the pore. Channel opening is triggered when Ca2+ binds the EF hands in the N-lobe of CaM. The structure of this domain complexed with CaM is known []. This domain forms an elongated dimer with a CaM molecule bound at each end; each CaM wraps around three alpha-helices, two from one CaMBD subunit and one from the other.; GO: 0005516 calmodulin binding, 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016021 integral to membrane; PDB: 1G4Y_B 1QX7_D 3SJQ_D 2PNV_A 1KKD_A.
Probab=35.63 E-value=30 Score=25.30 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=19.6
Q ss_pred hhhhhcchHHHHHHHHHHHhhhcc
Q psy1611 277 HFNRQIPAAAMLIQCLWRCFAADK 300 (330)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~ 300 (330)
-.++.|++||..+|..|..|---.
T Consensus 4 ltKr~K~aAAnVLretWliyK~tk 27 (77)
T PF02888_consen 4 LTKRVKNAAANVLRETWLIYKHTK 27 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456778999999999999985544
No 64
>KOG0501|consensus
Probab=34.04 E-value=1.2e+02 Score=31.04 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHhhheeeCCCccccCCCCCCCCc
Q psy1611 27 ASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGL--IFSSYFVYLAEKDEKNEVVGGKPNSFNT 104 (330)
Q Consensus 27 ~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~--i~~s~~~~~~e~~~~~~~~~~~~~~f~~ 104 (330)
.+++..|+..|++|+.|+.|. ..+.-+.....+++++|. +.+-|+..++-.-.+.+...... -.-
T Consensus 321 ~SLFSaLKVVRLLRLGRVaRK-----------LD~YlEYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~~~~--n~i 387 (971)
T KOG0501|consen 321 GSLFSALKVVRLLRLGRVARK-----------LDHYLEYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRDEMD--NTI 387 (971)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHHHHHHHHHHHHHHHHHHHhheeccchheecccc--ccc
Confidence 345555666666666665332 234445555444444433 23334555554443333222221 123
Q ss_pred chhhHHhhhhee
Q psy1611 105 YADALWWGVITV 116 (330)
Q Consensus 105 y~~aly~~~iTl 116 (330)
-.|++.|-+..-
T Consensus 388 ~~dsWL~kLa~~ 399 (971)
T KOG0501|consen 388 QPDSWLWKLAND 399 (971)
T ss_pred ccchHHHHHHhh
Confidence 356766766544
No 65
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=33.81 E-value=1.7e+02 Score=21.28 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=14.1
Q ss_pred HHHHHHHhccchhhHhhHHHHHHHHH
Q psy1611 199 RDVIEQYSQGHLNMMVRIKELQRRLD 224 (330)
Q Consensus 199 ~d~~e~~~~g~~d~~~~i~~lq~~ld 224 (330)
.+.++++.+.-..+..|++.|++=+|
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T PF06667_consen 41 EQRLQELYEQAERMEERIETLERILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445555544455556666665554
No 66
>COG1422 Predicted membrane protein [Function unknown]
Probab=32.00 E-value=3.3e+02 Score=23.81 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy1611 140 VFAISFFALPAVRIENLLEFEVRLRSLTDVHRNA 173 (330)
Q Consensus 140 l~Gv~~~a~~ig~i~~~l~~~~~~~~l~~~~~~~ 173 (330)
++..+++++++..+...+.+-...+++.+..++.
T Consensus 51 lV~avi~gl~~~i~~~~liD~ekm~~~qk~m~ef 84 (201)
T COG1422 51 LVAAVITGLYITILQKLLIDQEKMKELQKMMKEF 84 (201)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3334555677777777666544555554444443
No 67
>KOG4427|consensus
Probab=31.82 E-value=43 Score=35.09 Aligned_cols=31 Identities=29% Similarity=0.509 Sum_probs=25.5
Q ss_pred hHHHHhhhhhhhcchHHHHHHHHHHHhhhccC
Q psy1611 270 QQKQRQKHFNRQIPAAAMLIQCLWRCFAADKC 301 (330)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (330)
|++ .++...|||..||..||..||-|..-+.
T Consensus 18 qeR-Eer~~qrrr~~aa~~iq~~lrsyl~Rkk 48 (1096)
T KOG4427|consen 18 QER-EERSYQRRREAAALFIQRVLRSYLVRKK 48 (1096)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5689999999999999999999876443
No 68
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=30.72 E-value=1.6e+02 Score=22.71 Aligned_cols=41 Identities=7% Similarity=0.235 Sum_probs=31.8
Q ss_pred CCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 101 SFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIE 154 (330)
Q Consensus 101 ~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~ 154 (330)
+|+.++..+| -.|..-.|.++..+-.-+|.++++|++|...
T Consensus 50 ~Y~PWf~Plw-------------EPPsGEiESLLFaLQAAiGAgiIgY~lG~~~ 90 (100)
T PRK02898 50 DYEPWFEPLW-------------EPPSGEIESLLFALQAALGAGIIGYILGYYK 90 (100)
T ss_pred CCcccccccc-------------cCCcchHHHHHHHHHHHHhhhhhheeeeehh
Confidence 4566666665 2467788999999999999999999999543
No 69
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=30.48 E-value=27 Score=19.39 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=16.9
Q ss_pred HHHHHHHhhhccCC-cccceee
Q psy1611 289 IQCLWRCFAADKCF-NSQATWD 309 (330)
Q Consensus 289 ~~~~~~~~~~~~~~-~~~~~~~ 309 (330)
++++.+..|.|.++ ++..||.
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~ 22 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQ 22 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHH
Confidence 56788889999998 7777774
No 70
>TIGR00680 kdpA K+-transporting ATPase, KdpA. Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit PubMed:9858692].
Probab=29.69 E-value=5.4e+02 Score=26.23 Aligned_cols=67 Identities=19% Similarity=0.092 Sum_probs=43.4
Q ss_pred HHHHHhHHhhheeeCCCcc----------ccCCCCCCCCcchhhHHhhhheeeccccCCC--ccCCchhhHHHHHHHHH
Q psy1611 75 GLIFSSYFVYLAEKDEKNE----------VVGGKPNSFNTYADALWWGVITVTTIGYGDA--VPQTWMGKIVASCFSVF 141 (330)
Q Consensus 75 ~~i~~s~~~~~~e~~~~~~----------~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi--~P~t~~gri~~~~~~l~ 141 (330)
+++....+.+..|...+|. ..+++...|.-...|+|=+++|.|+-|-=+- -..|+.|-....+-|.+
T Consensus 294 lf~~~~~~~~~~E~~gnp~l~~~g~~~~gnmEGKE~RFG~~~Salfa~~TT~tS~GaVN~mhDS~tPlgG~v~l~~M~L 372 (563)
T TIGR00680 294 IYGILIAIAMVGEFQGNPLLNALGGESQPNLEGKEVRFGVVLSALWAVSTTGTSCGAVNGMHDSLTPLGGMVPLSDMFL 372 (563)
T ss_pred HHHHHHHHHHHHHhcCCchhhhccccccCCCcceeeeecchhhHHHHHHHHhhcccchhhhhhccCchhhHHHHHHHHH
Confidence 3333444556666555542 3467777898999999999999988874221 23466677766666655
No 71
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=29.59 E-value=2.5e+02 Score=21.23 Aligned_cols=27 Identities=7% Similarity=0.166 Sum_probs=17.0
Q ss_pred cCCchhhHHHHHHHHHHH-HHHHHHHHH
Q psy1611 126 PQTWMGKIVASCFSVFAI-SFFALPAVR 152 (330)
Q Consensus 126 P~t~~gri~~~~~~l~Gv-~~~a~~ig~ 152 (330)
|.+...|.+.++..++|+ ...+.++..
T Consensus 39 ~~~~~wRalSii~FI~giil~lG~~i~s 66 (92)
T PF05767_consen 39 PTDYTWRALSIICFILGIILTLGIVIFS 66 (92)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566888888888883 445555543
No 72
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=29.47 E-value=5.5e+02 Score=25.16 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1611 137 CFSVFAISFFALPAVRIENLLE 158 (330)
Q Consensus 137 ~~~l~Gv~~~a~~ig~i~~~l~ 158 (330)
++.+.|.++.++|...+.....
T Consensus 173 ~i~~~g~Glv~iP~~l~~~~~~ 194 (471)
T PF04791_consen 173 FIILLGYGLVAIPRDLWRSSNS 194 (471)
T ss_pred HHHHHhccHHHHHHHHHHhccc
Confidence 4446788888888887766443
No 73
>COG1615 Uncharacterized conserved protein [Function unknown]
Probab=28.67 E-value=1.9e+02 Score=30.45 Aligned_cols=37 Identities=30% Similarity=0.223 Sum_probs=31.4
Q ss_pred heeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHH
Q psy1611 114 ITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPA 150 (330)
Q Consensus 114 iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~i 150 (330)
-+.|.-||-|+..+-+..-+++++.+++++++|..+.
T Consensus 220 g~~~GA~YTDI~~~lP~~~iL~aial~~aia~f~ai~ 256 (885)
T COG1615 220 GTFTGAGYTDINAQLPAKLILIAIALLCAIAFFSAIF 256 (885)
T ss_pred CcccccCceeeeeeccHHHHHHHHHHHHHHHHHHHHH
Confidence 4668899999999999999999999999987766554
No 74
>PLN03223 Polycystin cation channel protein; Provisional
Probab=28.60 E-value=2.3e+02 Score=32.18 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q psy1611 30 IRGIRFLQILRML 42 (330)
Q Consensus 30 lr~lRllRllR~~ 42 (330)
+..+|++|++|.-
T Consensus 1301 LsiLKfLRLLRFN 1313 (1634)
T PLN03223 1301 LLLGRILKLMDFQ 1313 (1634)
T ss_pred HHHHHHHHHhccC
Confidence 4445555555443
No 75
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=26.82 E-value=1.6e+02 Score=24.33 Aligned_cols=61 Identities=20% Similarity=0.355 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccc----cCCCccCCchhhHHHHHHH
Q psy1611 64 ELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIG----YGDAVPQTWMGKIVASCFS 139 (330)
Q Consensus 64 ~l~~~l~i~~l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVG----YGDi~P~t~~gri~~~~~~ 139 (330)
.+.+++.+.++.+...+.++++..+.. .+=+..++.+|...| +|++.|..-.|-.+..+++
T Consensus 47 Al~till~~ll~~~T~G~~~~lm~~kg---------------i~rm~lG~~vm~~~~~llw~ggv~~~~IAg~~lv~fil 111 (144)
T PF01350_consen 47 ALETILLVVLLGVMTLGVFWFLMRRKG---------------IGRMSLGMLVMAVAGYLLWMGGVPPGQIAGVLLVFFIL 111 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCC---------------cchhhHHHHHHHHHHHHHHhcCCcHHHhHHHHHHHHHH
Confidence 355666666666666676666665532 222344555555555 4888887766555444433
No 76
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=25.40 E-value=3e+02 Score=21.93 Aligned_cols=60 Identities=10% Similarity=0.076 Sum_probs=27.7
Q ss_pred chhhHHHHHHHHHH---HHHHHHHHHHHHHHHH------------HHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q psy1611 129 WMGKIVASCFSVFA---ISFFALPAVRIENLLE------------FEVRLRSLTDVHRNAIRAIRKIKYFVARRK 188 (330)
Q Consensus 129 ~~gri~~~~~~l~G---v~~~a~~ig~i~~~l~------------~~~~~~~l~~~~~~~i~~i~~~~~~l~~~k 188 (330)
+.-|+++++.+++| ..+++|++..+.---. ....+.++....+..-+.++.|+.|+..+.
T Consensus 34 ~~VRl~~vl~~~~~~~~~~~~~Yi~l~~~lp~~P~~~~~~~~~~s~~~~l~~~~~~~~~~e~Rlr~mE~yVTS~~ 108 (118)
T PRK10697 34 KLVRIIVVLSIFFGLFVFTLVAYIILSFALDPMPDNMAFGEQQPSSSELLDEVDRELAAGEQRLREMERYVTSDT 108 (118)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhccCCcccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34466666555554 4455555553332110 112233444444444455555666665443
No 77
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=24.99 E-value=7.2e+02 Score=26.05 Aligned_cols=13 Identities=0% Similarity=0.105 Sum_probs=6.2
Q ss_pred hhhHHHHHHHHHH
Q psy1611 130 MGKIVASCFSVFA 142 (330)
Q Consensus 130 ~gri~~~~~~l~G 142 (330)
..-+.+.+++++|
T Consensus 560 ~~s~~~lf~~~~G 572 (743)
T TIGR00870 560 FETSQELFWAIIG 572 (743)
T ss_pred HHHHHHHHHHHcC
Confidence 3444455555544
No 78
>PHA00407 phage lambda Rz1-like protein
Probab=24.90 E-value=2.8e+02 Score=20.24 Aligned_cols=15 Identities=33% Similarity=0.665 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy1611 30 IRGIRFLQILRMLHV 44 (330)
Q Consensus 30 lr~lRllRllR~~rl 44 (330)
+|.+|..|++|...+
T Consensus 4 lR~lr~~r~lr~~s~ 18 (84)
T PHA00407 4 LRKLRLRRILRLRSM 18 (84)
T ss_pred HHHHHHHHHHHHHhh
Confidence 455666666655443
No 79
>PF11167 DUF2953: Protein of unknown function (DUF2953); InterPro: IPR021338 This family of proteins has no known function.
Probab=23.49 E-value=68 Score=21.25 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=17.1
Q ss_pred eccccCCCccCCchhhHHHHHHHHHHHH
Q psy1611 117 TTIGYGDAVPQTWMGKIVASCFSVFAIS 144 (330)
Q Consensus 117 TTVGYGDi~P~t~~gri~~~~~~l~Gv~ 144 (330)
|++|.||.. ..|.++..+|.+.|.+
T Consensus 1 ~~~G~~Daa---~Tgi~~G~l~~~~~~l 25 (53)
T PF11167_consen 1 TTIGLGDAA---DTGILYGLLWAIKGIL 25 (53)
T ss_pred CeeeccCHH---HHHHHHHHHHHHHHHH
Confidence 467888865 5677777777776643
No 80
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=22.05 E-value=3.1e+02 Score=21.36 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=5.9
Q ss_pred chhhHHhhhhee
Q psy1611 105 YADALWWGVITV 116 (330)
Q Consensus 105 y~~aly~~~iTl 116 (330)
.-++++|.+...
T Consensus 30 ~~~~l~Wl~~~i 41 (115)
T PF10066_consen 30 LKYSLLWLVFSI 41 (115)
T ss_pred HHHHHHHHHHHH
Confidence 345555544443
No 81
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=21.66 E-value=2.4e+02 Score=22.84 Aligned_cols=50 Identities=12% Similarity=-0.019 Sum_probs=24.8
Q ss_pred hhhHHhhhheeeccccCC-----CccCCchhhHHHHHHHHHH-HHHHHHHHHHHHH
Q psy1611 106 ADALWWGVITVTTIGYGD-----AVPQTWMGKIVASCFSVFA-ISFFALPAVRIEN 155 (330)
Q Consensus 106 ~~aly~~~iTlTTVGYGD-----i~P~t~~gri~~~~~~l~G-v~~~a~~ig~i~~ 155 (330)
..+.+|.-+.+..-.+|. .+|.=.-++.+-..-=++| .++|++..|.+.-
T Consensus 39 aq~~h~~e~~l~~~~~~~~~~~~~i~pL~e~~Aie~Gaell~E~fiF~Va~~li~~ 94 (134)
T PF07047_consen 39 AQSYHRFEVRLKMRILGLKGKPRKIRPLNEEKAIELGAELLGEAFIFSVAAGLIIY 94 (134)
T ss_pred HHHHHHHHHHHHHHHhccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555544443333333 2233333455555555666 6666666665544
No 82
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=21.36 E-value=3.3e+02 Score=19.79 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=13.2
Q ss_pred HHHHHHHhccchhhHhhHHHHHHHHH
Q psy1611 199 RDVIEQYSQGHLNMMVRIKELQRRLD 224 (330)
Q Consensus 199 ~d~~e~~~~g~~d~~~~i~~lq~~ld 224 (330)
.+.++++.+.-..+..|++.||+=+|
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T TIGR02976 41 QALLQELYAKADRLEERIDTLERILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444445556666655444
No 83
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.00 E-value=4.6e+02 Score=22.32 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy1611 144 SFFALPAVRIENLLE 158 (330)
Q Consensus 144 ~~~a~~ig~i~~~l~ 158 (330)
.++.+++..+.+.+.
T Consensus 111 LfL~l~I~r~~~li~ 125 (192)
T PF05529_consen 111 LFLSLVIRRVHSLIK 125 (192)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555444
No 84
>PHA02898 virion envelope protein; Provisional
Probab=20.10 E-value=3.9e+02 Score=20.12 Aligned_cols=25 Identities=8% Similarity=0.026 Sum_probs=15.1
Q ss_pred CchhhHHHHHHHHHH-HHHHHHHHHH
Q psy1611 128 TWMGKIVASCFSVFA-ISFFALPAVR 152 (330)
Q Consensus 128 t~~gri~~~~~~l~G-v~~~a~~ig~ 152 (330)
....|.++++..++| +..+++++..
T Consensus 41 ~~~wRalSii~FIlgivl~lG~~ifs 66 (92)
T PHA02898 41 DSALRSISIISFILAIILILGIIFFK 66 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777 4445555543
Done!