Query psy1611
Match_columns 330
No_of_seqs 253 out of 2098
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 21:07:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1orq_C Potassium channel; volt 99.9 9.9E-25 3.4E-29 193.4 12.6 147 2-159 73-220 (223)
2 2a9h_A Voltage-gated potassium 99.9 9.4E-25 3.2E-29 182.3 7.3 124 2-159 16-139 (155)
3 2r9r_B Paddle chimera voltage 99.9 2.6E-24 9E-29 212.4 9.7 155 1-162 274-433 (514)
4 3beh_A MLL3241 protein; transm 99.9 5.2E-24 1.8E-28 201.3 6.7 142 2-160 75-217 (355)
5 2ih3_C Voltage-gated potassium 99.9 4.3E-23 1.5E-27 165.8 9.5 115 29-160 3-117 (122)
6 3eff_K Voltage-gated potassium 99.8 1.5E-19 5.2E-24 148.4 12.0 92 61-159 4-95 (139)
7 3rvy_A ION transport protein; 99.8 7.3E-21 2.5E-25 174.6 2.9 142 2-160 95-242 (285)
8 2k1e_A Water soluble analogue 99.8 5.3E-19 1.8E-23 137.7 9.1 90 63-159 6-95 (103)
9 4gow_A Potassium voltage-gated 99.8 1.6E-19 5.6E-24 123.1 3.4 69 163-231 2-70 (72)
10 4h33_A LMO2059 protein; bilaye 99.8 4.3E-19 1.5E-23 145.2 6.5 79 68-158 19-97 (137)
11 3vou_A ION transport 2 domain 99.7 1.3E-17 4.6E-22 138.2 11.8 56 103-158 51-106 (148)
12 3ouf_A Potassium channel prote 99.7 7.4E-17 2.5E-21 124.0 8.6 59 103-161 31-89 (97)
13 2q67_A Potassium channel prote 99.7 8.6E-17 2.9E-21 127.3 8.9 56 103-158 48-103 (114)
14 3pjs_K KCSA, voltage-gated pot 99.7 2E-18 6.7E-23 146.0 -1.2 82 70-158 40-121 (166)
15 3ldc_A Calcium-gated potassium 99.7 1.3E-16 4.3E-21 118.9 8.1 73 71-157 9-81 (82)
16 1p7b_A Integral membrane chann 99.6 6.5E-15 2.2E-19 137.0 9.9 98 55-158 53-150 (333)
17 4dxw_A Navrh, ION transport pr 99.5 3.8E-15 1.3E-19 132.1 6.2 143 2-159 78-225 (229)
18 1xl4_A Inward rectifier potass 99.5 1.6E-14 5.5E-19 132.9 8.4 94 58-158 42-136 (301)
19 2qks_A KIR3.1-prokaryotic KIR 99.5 2.9E-14 9.9E-19 132.1 9.2 58 101-158 73-132 (321)
20 3um7_A Potassium channel subfa 99.4 3.8E-13 1.3E-17 123.5 9.5 57 103-159 114-170 (309)
21 3ukm_A Potassium channel subfa 99.4 7.2E-13 2.5E-17 119.9 8.4 76 70-158 180-262 (280)
22 3um7_A Potassium channel subfa 99.4 4.4E-13 1.5E-17 123.0 6.4 71 74-158 208-284 (309)
23 3ukm_A Potassium channel subfa 99.3 1.3E-12 4.5E-17 118.2 6.6 58 101-158 90-147 (280)
24 3sya_A G protein-activated inw 99.3 1E-11 3.6E-16 115.3 10.2 98 61-158 41-147 (340)
25 4gx0_A TRKA domain protein; me 99.3 8.8E-12 3E-16 124.4 10.1 55 103-157 50-105 (565)
26 1lnq_A MTHK channels, potassiu 99.3 2.7E-13 9.4E-18 126.7 -1.9 72 74-159 29-100 (336)
27 3spc_A Inward-rectifier K+ cha 99.2 2.5E-11 8.6E-16 112.8 9.5 98 61-158 43-150 (343)
28 1ors_C Potassium channel; volt 98.2 1.2E-06 4.1E-11 70.5 5.4 61 1-66 70-130 (132)
29 2kyh_A KVAP, voltage-gated pot 97.1 0.00035 1.2E-08 57.0 4.4 48 2-54 86-133 (147)
30 4f4l_A ION transport protein; 96.8 0.00071 2.4E-08 52.5 2.9 88 65-159 6-99 (112)
31 3kg2_A Glutamate receptor 2; I 96.7 0.0025 8.5E-08 65.6 7.8 91 68-159 516-617 (823)
32 3bj4_A Potassium voltage-gated 93.1 0.027 9.4E-07 36.2 1.0 22 238-259 5-26 (49)
33 2ovc_A Potassium voltage-gated 90.5 0.036 1.2E-06 32.7 -0.6 18 242-259 2-19 (33)
34 3hfe_A Potassium voltage-gated 86.6 0.22 7.4E-06 28.4 0.9 19 241-259 1-19 (31)
35 1ors_C Potassium channel; volt 76.4 2.9 0.0001 32.6 4.4 27 30-56 91-117 (132)
36 2lcm_A Voltage-dependent N-typ 75.1 1.6 5.5E-05 24.6 1.8 21 29-49 5-25 (28)
37 2kxw_B Sodium channel protein 74.9 1.7 5.9E-05 24.3 1.9 14 285-298 8-21 (27)
38 2r9r_B Paddle chimera voltage 73.9 2.8 9.6E-05 40.8 4.5 26 30-55 305-330 (514)
39 4dxw_A Navrh, ION transport pr 69.8 6.2 0.00021 33.5 5.3 83 33-123 98-180 (229)
40 3rvy_A ION transport protein; 69.3 2.2 7.6E-05 37.7 2.4 22 34-55 114-135 (285)
41 2l53_B CAM, voltage-gated sodi 67.5 3.1 0.00011 24.0 1.9 15 285-299 8-22 (31)
42 2kyh_A KVAP, voltage-gated pot 65.9 6.7 0.00023 31.3 4.4 22 30-51 106-127 (147)
43 1n2d_C IQ2 and IQ3 motifs from 64.4 4.1 0.00014 25.6 2.3 19 280-298 25-43 (48)
44 1orq_C Potassium channel; volt 60.2 22 0.00076 29.8 7.0 19 32-50 98-116 (223)
45 3pjz_A Potassium uptake protei 39.2 21 0.00071 34.4 3.6 42 103-144 305-348 (494)
46 3pjz_A Potassium uptake protei 37.4 36 0.0012 32.7 5.0 47 104-150 423-476 (494)
47 2ix7_C Myosin-5A; contractIle 36.6 16 0.00054 23.8 1.7 15 283-297 5-19 (58)
48 2pnv_A Small conductance calci 31.4 49 0.0017 20.4 3.2 30 198-227 7-36 (43)
49 3beh_A MLL3241 protein; transm 30.6 22 0.00075 32.1 2.2 21 34-54 95-115 (355)
50 2a9h_A Voltage-gated potassium 26.8 27 0.00091 28.0 1.8 22 27-48 18-39 (155)
51 3dvk_B Voltage-dependent R-typ 23.7 44 0.0015 17.7 1.6 13 284-296 7-19 (23)
52 2k44_A Hsapbk, K+-channel volt 21.9 7.4 0.00025 21.6 -1.6 12 32-43 14-25 (28)
53 3sjq_C Small conductance calci 21.4 48 0.0017 23.8 2.0 22 276-297 4-25 (87)
54 1g4y_B Calcium-activated potas 20.4 51 0.0018 24.3 2.0 24 276-299 22-45 (101)
No 1
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.92 E-value=9.9e-25 Score=193.36 Aligned_cols=147 Identities=24% Similarity=0.423 Sum_probs=111.4
Q ss_pred eeeehhhHHhHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1611 2 SEKNLIVVVASLIVLTIGSNGQIFAASAIRGIRFLQILRMLHVDRQ-GGTWRLLGSVVFIHRQELITTLYIGFLGLIFSS 80 (330)
Q Consensus 2 ~viDll~~iP~~l~~~~~~~~~~~~~~~lr~lRllRllR~~rl~r~-~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s 80 (330)
|++|+++++|+++.+..+.+ ......+|.+|++|++|++|+.+. .+..+.+...+.. ..+..++.+.++.+++++
T Consensus 73 ~iiDllailP~~~~~~~~~~--~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~--~~l~~~~~~~~~~~~~~~ 148 (223)
T 1orq_C 73 TLYEIPALVPAGLLALIEGH--LAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADK--IRFYHLFGAVMLTVLYGA 148 (223)
T ss_dssp HHHHCTTHHHHHHHHHHHHH--HHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 57999999999776542111 101235777777777777777663 2334444444333 245556666667778888
Q ss_pred HHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 81 YFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLEF 159 (330)
Q Consensus 81 ~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~~l~~ 159 (330)
+++|.+|++..+ +++++|.+|+||+++|+|||||||++|.|+.||+++++++++|++++++++|.+++.+++
T Consensus 149 ~~~~~~e~~~~~-------~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 149 FAIYIVEYPDPN-------SSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHTTSSSTT-------CSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcC-------CCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999885332 367899999999999999999999999999999999999999999999999999997764
No 2
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.91 E-value=9.4e-25 Score=182.30 Aligned_cols=124 Identities=27% Similarity=0.434 Sum_probs=76.1
Q ss_pred eeeehhhHHhHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1611 2 SEKNLIVVVASLIVLTIGSNGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSY 81 (330)
Q Consensus 2 ~viDll~~iP~~l~~~~~~~~~~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s~ 81 (330)
+++|+++++|. +|.+|++|++|++ +.|....+ .. +.+...+++.++++++++.
T Consensus 16 ~~~dli~~lp~-----------------lr~lRllRi~ril-l~r~~~~l-------~~--~~~~~~~~~~~~~i~~~a~ 68 (155)
T 2a9h_A 16 GRGRLIKHMPP-----------------MLSGLLARLVKLL-LGRHGSAL-------HW--RAAGAATVLLVIVLLAGSY 68 (155)
T ss_dssp ------------------------------------------------CC-------HH--HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-----------------HHHHHHHHHHHHH-HHHHHHHH-------HH--HHHHHHHHHHHHHHHHHHH
Confidence 47888888885 4567777777777 65652222 11 2233334444556677888
Q ss_pred HhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 82 FVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLEF 159 (330)
Q Consensus 82 ~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~~l~~ 159 (330)
++|.+|+..++ +.|.+|.+|+||+++|+|||||||++|.|+.||+++++++++|++++++++|.+++.+.+
T Consensus 69 ~~~~~E~~~~~-------~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~ 139 (155)
T 2a9h_A 69 LAVLAERGAPG-------AALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVG 139 (155)
T ss_dssp HHHHHHTTSSC-------SSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhccCCC-------CccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999986533 368899999999999999999999999999999999999999999999999999997763
No 3
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.90 E-value=2.6e-24 Score=212.42 Aligned_cols=155 Identities=28% Similarity=0.518 Sum_probs=129.6
Q ss_pred CeeeehhhHHhHHHHHHhcC---CCh--hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 1 MSEKNLIVVVASLIVLTIGS---NGQ--IFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLG 75 (330)
Q Consensus 1 ~~viDll~~iP~~l~~~~~~---~~~--~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~ 75 (330)
+|++|+++++|+++.+.... .+. ......+|++|++|++|++|+.|....++.+...+..+.+.+..++++++++
T Consensus 274 wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~ 353 (514)
T 2r9r_B 274 MNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIG 353 (514)
T ss_dssp HHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999987765421 111 1114578899999999999999999999999999998888888777777777
Q ss_pred HHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 76 LIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIEN 155 (330)
Q Consensus 76 ~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~ 155 (330)
++++|.++|.+|+..+ +++|.+|.+|+||+++|||||||||++|.|+.|++++++++++|++++++++|++.+
T Consensus 354 ~~if~~~~~~~e~~~~-------~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~ 426 (514)
T 2r9r_B 354 VILFSSAVYFAEADER-------DSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVS 426 (514)
T ss_dssp HHHHHHHHHHHHTTCT-------TCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHhhhheeeccCC-------CccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHH
Confidence 7778888888876533 348899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy1611 156 LLEFEVR 162 (330)
Q Consensus 156 ~l~~~~~ 162 (330)
.+++...
T Consensus 427 ~f~~~~~ 433 (514)
T 2r9r_B 427 NFNYFYH 433 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8875443
No 4
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.89 E-value=5.2e-24 Score=201.34 Aligned_cols=142 Identities=25% Similarity=0.398 Sum_probs=122.7
Q ss_pred eeeehhhH-HhHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1611 2 SEKNLIVV-VASLIVLTIGSNGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSS 80 (330)
Q Consensus 2 ~viDll~~-iP~~l~~~~~~~~~~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s 80 (330)
|++|++++ +|++..+..+ ++.+|++|++|++|+.|..+.++.+...+..+.+.+..++.+.+++++++|
T Consensus 75 ~i~Dl~~i~~p~~~~~~~~----------~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~a 144 (355)
T 3beh_A 75 IAIDVLAVLVPLAAFLLDG----------SPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVA 144 (355)
T ss_dssp HHHHHHHHHHHHHHHHSCC----------SGGGGGGGGGGGSHHHHTCSSHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcc----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999 5876543221 245788888888888889999999988888888888888888888888999
Q ss_pred HHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 81 YFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLEFE 160 (330)
Q Consensus 81 ~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~~l~~~ 160 (330)
+++|.+|+..+++ +|.+|.+|+||+++|||||||||++|.|+.||+++++++++|++++++++|.+++.+.+.
T Consensus 145 ~~~~~~e~~~~~~-------~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 217 (355)
T 3beh_A 145 LAAYVIERDIQPE-------KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQE 217 (355)
T ss_dssp HHHHHHHTTTCHH-------HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCc-------ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876654 678999999999999999999999999999999999999999999999999999988753
No 5
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.88 E-value=4.3e-23 Score=165.80 Aligned_cols=115 Identities=26% Similarity=0.441 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhheeeCCCccccCCCCCCCCcchhh
Q psy1611 29 AIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADA 108 (330)
Q Consensus 29 ~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~a 108 (330)
.+|++|++|++|++ +.|+... +. ...+...+.+.++.+++++.++|.+|++.++ +.+++|.||
T Consensus 3 ~lr~lRl~Ri~ri~-L~R~~~~-------l~--~~~~~~~~~~~~~~~~~~a~~~~~~E~~~~~-------~~~~~~~~a 65 (122)
T 2ih3_C 3 PMLSGLLARLVKLL-LGRHGSA-------LH--WRAAGAATVLLVIVLLAGSYLAVLAERGAPG-------AQLITYPRA 65 (122)
T ss_dssp -----------------------------CH--HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-------CCCCSHHHH
T ss_pred HHHHHHHHHHHHHH-HHHhHHH-------HH--HHHHHHHHHHHHHHHHHHHHhhheeeecCCC-------CccCccccc
Confidence 57788888888888 7666221 11 1123333344445667788889999986533 367899999
Q ss_pred HHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 109 LWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLEFE 160 (330)
Q Consensus 109 ly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~~l~~~ 160 (330)
+||+++|+|||||||++|.|+.||+++++++++|+.++++++|.+++.+.+.
T Consensus 66 ~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 117 (122)
T 2ih3_C 66 LWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 117 (122)
T ss_dssp HHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999977643
No 6
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.81 E-value=1.5e-19 Score=148.40 Aligned_cols=92 Identities=33% Similarity=0.504 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHH
Q psy1611 61 HRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSV 140 (330)
Q Consensus 61 ~~~~l~~~l~i~~l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l 140 (330)
+.+.+...+++.+++++++++++|.+|++.++ +.+++|.+|+||+++|+|||||||++|.|+.||++++++++
T Consensus 4 ~~r~~~~~~~~~~~~~~~~a~~~~~~e~~~~~-------~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~ 76 (139)
T 3eff_K 4 HWRAAGAATVLLVIVLLAGSYLAVLAERGAPG-------AQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMV 76 (139)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTSSCTT-------CCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-------cccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHH
Confidence 34556666677777788899999999986543 36799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1611 141 FAISFFALPAVRIENLLEF 159 (330)
Q Consensus 141 ~Gv~~~a~~ig~i~~~l~~ 159 (330)
+|+++++++++.+++.+.+
T Consensus 77 ~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 77 AGITSFGLVTAALATWFVG 95 (139)
T ss_dssp HHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987653
No 7
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.80 E-value=7.3e-21 Score=174.56 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=118.9
Q ss_pred eeeehhhHHhHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1611 2 SEKNLIVVVASLIVLTIGSNGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSY 81 (330)
Q Consensus 2 ~viDll~~iP~~l~~~~~~~~~~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s~ 81 (330)
|++|+++++|+++... ..++++|++|++|++|+.|..+.++.+...+..+.+.+..++++.+++++++|.
T Consensus 95 n~~Dl~~v~~~~i~~~----------~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~ 164 (285)
T 3rvy_A 95 SLFDFFVVAISLVPTS----------SGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAI 164 (285)
T ss_dssp HHHHHHHHHHHHSCSS----------SSCTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHccc----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999875421 125678999999999999999999999999999999998888888888888888
Q ss_pred HhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccC-CCc-cCCchh----hHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 82 FVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYG-DAV-PQTWMG----KIVASCFSVFAISFFALPAVRIEN 155 (330)
Q Consensus 82 ~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYG-Di~-P~t~~g----ri~~~~~~l~Gv~~~a~~ig~i~~ 155 (330)
+.+..+++.+++ +|+++.+|+||+++|+||+||| |+. |.+..| +.+++++++.|++++++++|++.+
T Consensus 165 ~g~~~f~~~~~~-------~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~ 237 (285)
T 3rvy_A 165 MATQLFGERFPE-------WFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVD 237 (285)
T ss_dssp HHHHHHTTTCHH-------HHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCccccc-------ccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777665554 6999999999999999999999 995 876654 788899999999999999999999
Q ss_pred HHHHH
Q psy1611 156 LLEFE 160 (330)
Q Consensus 156 ~l~~~ 160 (330)
.+++.
T Consensus 238 ~f~~~ 242 (285)
T 3rvy_A 238 AMAIL 242 (285)
T ss_dssp HC---
T ss_pred HHHHH
Confidence 87743
No 8
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.78 E-value=5.3e-19 Score=137.65 Aligned_cols=90 Identities=30% Similarity=0.322 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHH
Q psy1611 63 QELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFA 142 (330)
Q Consensus 63 ~~l~~~l~i~~l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~G 142 (330)
+.+...+.+.++++++++.++|.+|+..++ +.+.+|.+|+||+++|+|||||||++|.|+.||+++++++++|
T Consensus 6 r~~l~~~~~~~~~~~~~a~~~~~~E~~~~~-------~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G 78 (103)
T 2k1e_A 6 REAQKAEEELQKVLEEASKKAVEAERGAPG-------AALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAG 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-------CCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCC-------cccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHH
Confidence 344545556666777788899999986543 3678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1611 143 ISFFALPAVRIENLLEF 159 (330)
Q Consensus 143 v~~~a~~ig~i~~~l~~ 159 (330)
+.+++++++.+++.+.+
T Consensus 79 ~~~~~~~~~~i~~~~~~ 95 (103)
T 2k1e_A 79 IEVFALVTAALATDFVR 95 (103)
T ss_dssp HHHHHHTHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999997764
No 9
>4gow_A Potassium voltage-gated channel subfamily KQT MEM; protein complex, protein binding, ION channel, calmodulin, P channel; 2.60A {Homo sapiens}
Probab=99.76 E-value=1.6e-19 Score=123.10 Aligned_cols=69 Identities=49% Similarity=0.864 Sum_probs=24.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHhccchhhHhhHHHHHHHHHhhhCCCC
Q psy1611 163 LRSLTDVHRNAIRAIRKIKYFVARRKFQQARKPYDVRDVIEQYSQGHLNMMVRIKELQRRLDQTLGKPG 231 (330)
Q Consensus 163 ~~~l~~~~~~~i~~i~~~~~~l~~~k~~~~~~~~~v~d~~e~~~~g~~d~~~~i~~lq~~ld~~~~~~~ 231 (330)
.+++.+.+++.++++++|+++++++||+|+++|||++|++||||+||+||++++|+||+++|+++|+++
T Consensus 2 ~edl~p~~k~~irair~mkf~VarrkFkealrPYDVkDVIEQYSaGHldml~RiK~LQ~RlDqilgk~~ 70 (72)
T 4gow_A 2 VDDIMPAVKTVIRSIRILKFLVAKRKFKETLRPYDVKDVIEQYSAGHLDMLGRIKSLQTRVDQIVGRGP 70 (72)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 467889999999999999999999999999999999999999999999999999999999999999875
No 10
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.76 E-value=4.3e-19 Score=145.22 Aligned_cols=79 Identities=39% Similarity=0.690 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHH
Q psy1611 68 TLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFA 147 (330)
Q Consensus 68 ~l~i~~l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a 147 (330)
++++.++++++++..+++.|+ ++++|.||+||+++|+|||||||++|.|+.||+++++++++|+++++
T Consensus 19 ~l~~~~~~~~~~~~~~~~~e~------------~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~ 86 (137)
T 4h33_A 19 FLMIFVLLVIIIPVPMVFIEP------------EINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIG 86 (137)
T ss_dssp HHHHHHHHHHHTHHHHHHHCS------------SCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHH
Confidence 333444445555556666664 34789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1611 148 LPAVRIENLLE 158 (330)
Q Consensus 148 ~~ig~i~~~l~ 158 (330)
+++|.+++.+.
T Consensus 87 ~~~~~i~~~~~ 97 (137)
T 4h33_A 87 MITSTITNFFR 97 (137)
T ss_dssp HHHHHHHTTTT
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 11
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.74 E-value=1.3e-17 Score=138.20 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=53.0
Q ss_pred CcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 103 NTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLE 158 (330)
Q Consensus 103 ~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~~l~ 158 (330)
++|.||+||+++|+|||||||++|.|+.||+++++++++|+++++++++.+++.++
T Consensus 51 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 106 (148)
T 3vou_A 51 LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQ 106 (148)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999887544
No 12
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.68 E-value=7.4e-17 Score=123.99 Aligned_cols=59 Identities=31% Similarity=0.432 Sum_probs=55.4
Q ss_pred CcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 103 NTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLEFEV 161 (330)
Q Consensus 103 ~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~~l~~~~ 161 (330)
++|.||+||+++|+|||||||++|.|+.||+++++++++|+.++++.++.+++.++...
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~ 89 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 89 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 68999999999999999999999999999999999999999999999999999776433
No 13
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.68 E-value=8.6e-17 Score=127.32 Aligned_cols=56 Identities=29% Similarity=0.377 Sum_probs=53.5
Q ss_pred CcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 103 NTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLE 158 (330)
Q Consensus 103 ~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~~l~ 158 (330)
++|.||+||+++|+|||||||++|.|+.||+++++++++|+.+++++++.+++.++
T Consensus 48 ~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~ 103 (114)
T 2q67_A 48 LRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 103 (114)
T ss_dssp CCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999998654
No 14
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.68 E-value=2e-18 Score=145.96 Aligned_cols=82 Identities=35% Similarity=0.586 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHH
Q psy1611 70 YIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALP 149 (330)
Q Consensus 70 ~i~~l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ 149 (330)
.+++++++++++++|.+|++.++ +.+++|.+|+||+++|+|||||||++|.|+.||+++++++++|+++++++
T Consensus 40 ~~~~~~~~~~a~~~~~~e~~~~~-------~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~ 112 (166)
T 3pjs_K 40 VLLVIVLLAGSYLAVLAERGAPG-------AQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLV 112 (166)
T ss_dssp SSSTTTTTTTSSSSSSTTSSSTT-------CCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC-------cccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHH
Confidence 33344566677788888876533 36789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1611 150 AVRIENLLE 158 (330)
Q Consensus 150 ig~i~~~l~ 158 (330)
+|.+++.+.
T Consensus 113 ~~~i~~~~~ 121 (166)
T 3pjs_K 113 TAALATWFV 121 (166)
T ss_dssp HTTSSSSSS
T ss_pred HHHHHHHHH
Confidence 999988665
No 15
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.67 E-value=1.3e-16 Score=118.86 Aligned_cols=73 Identities=26% Similarity=0.514 Sum_probs=63.6
Q ss_pred HHHHHHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHH
Q psy1611 71 IGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPA 150 (330)
Q Consensus 71 i~~l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~i 150 (330)
+.+..+.+++.+++..|+ ++|.||+||+++|+|||||||++|.|+.||++++++++.|+.++++.+
T Consensus 9 l~~~~~~~g~~~~~~~e~--------------~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~ 74 (82)
T 3ldc_A 9 LVLAVIIYGTAGFHFIEG--------------ESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAV 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 333455566677777776 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1611 151 VRIENLL 157 (330)
Q Consensus 151 g~i~~~l 157 (330)
+.+++.+
T Consensus 75 ~~i~~~l 81 (82)
T 3ldc_A 75 ERLLEFL 81 (82)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988743
No 16
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.57 E-value=6.5e-15 Score=136.99 Aligned_cols=98 Identities=19% Similarity=0.163 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHH
Q psy1611 55 GSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIV 134 (330)
Q Consensus 55 ~~~l~~~~~~l~~~l~i~~l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~ 134 (330)
...+..+++.++.++++.++++++++.++|+++++..+ +..+.+|.+|+||+++|+|||||||++|.|+.|+++
T Consensus 53 ~~~l~~~~~~ll~~~~~~~l~~~l~fally~~e~~~~~------~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~ 126 (333)
T 1p7b_A 53 YWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIA------NQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAI 126 (333)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHTTTSSSSSCCC------CSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------CCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHH
Confidence 34445566666666666555554444455777654211 124578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 135 ASCFSVFAISFFALPAVRIENLLE 158 (330)
Q Consensus 135 ~~~~~l~Gv~~~a~~ig~i~~~l~ 158 (330)
+++++++|++++++++|.+.+.+.
T Consensus 127 ~~~~~l~G~~~~a~~ig~i~~~~~ 150 (333)
T 1p7b_A 127 ATLEIFVGMSGIALSTGLVFARFA 150 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999776
No 17
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.54 E-value=3.8e-15 Score=132.06 Aligned_cols=143 Identities=13% Similarity=0.139 Sum_probs=111.6
Q ss_pred eeeehhhHHhHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1611 2 SEKNLIVVVASLIVLTIGSNGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSY 81 (330)
Q Consensus 2 ~viDll~~iP~~l~~~~~~~~~~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s~ 81 (330)
|++|+++++|+++....+ ..++.+|++|++|++|+.|..+.++.+...+..+.+.+..+..+.++.+.++|.
T Consensus 78 ni~D~~~v~~~~i~~~~~--------~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~ 149 (229)
T 4dxw_A 78 NIFDTVIVAISLIPIPNN--------SSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYAT 149 (229)
T ss_dssp HHHHHHHHHHTTCC----------------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcc--------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999886544211 235677889999999999999999999999999999999988888888888887
Q ss_pred HhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCc----cCCchhhHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy1611 82 FVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAV----PQTWMGKIVASCFSVFA-ISFFALPAVRIENL 156 (330)
Q Consensus 82 ~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~----P~t~~gri~~~~~~l~G-v~~~a~~ig~i~~~ 156 (330)
+.+..+++.+|+ +|+++.+|+||.+.++|+.||+|+- ..++.+.++.+.++++| ..+.++++|.+.++
T Consensus 150 ~g~~lf~~~~~~-------~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~ 222 (229)
T 4dxw_A 150 MGAILFGNDDPS-------RWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDV 222 (229)
T ss_dssp HHHHHTTTTSCT-------TTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCcc-------cccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666655443 7999999999999999999999972 23445566666555555 88999999999998
Q ss_pred HHH
Q psy1611 157 LEF 159 (330)
Q Consensus 157 l~~ 159 (330)
+++
T Consensus 223 f~~ 225 (229)
T 4dxw_A 223 VIQ 225 (229)
T ss_dssp HHT
T ss_pred HHH
Confidence 774
No 18
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.52 E-value=1.6e-14 Score=132.85 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHH
Q psy1611 58 VFIHRQELITTLYIG-FLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVAS 136 (330)
Q Consensus 58 l~~~~~~l~~~l~i~-~l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~ 136 (330)
+..+++.++.+++.. ++.++++|.++|..+.... +..+.+|.+|+||+++|+|||||||++|.|+.||++++
T Consensus 42 l~~~~~~ll~~~~~~~~~~~l~fa~ly~~~~~~~~-------~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~ 114 (301)
T 1xl4_A 42 LTVSWPVFITLITGLYLVTNALFALAYLACGDVIE-------NARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVT 114 (301)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCST-------TSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccC-------CCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHH
Confidence 334455544444444 3344666766555543221 13568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1611 137 CFSVFAISFFALPAVRIENLLE 158 (330)
Q Consensus 137 ~~~l~Gv~~~a~~ig~i~~~l~ 158 (330)
+.+++|++++++++|.+.+.+.
T Consensus 115 ~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 115 LEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998665
No 19
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.51 E-value=2.9e-14 Score=132.12 Aligned_cols=58 Identities=26% Similarity=0.311 Sum_probs=54.9
Q ss_pred CCC--cchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 101 SFN--TYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLE 158 (330)
Q Consensus 101 ~f~--~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~~l~ 158 (330)
++. +|.+|+||+++|+|||||||++|.|..|++++++.+++|++++++++|.+.+.+.
T Consensus 73 ~~~~~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~ 132 (321)
T 2qks_A 73 NQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMS 132 (321)
T ss_dssp TCSSTTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCcchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 8999999999999999999999999999999999999999999999999999776
No 20
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.42 E-value=3.8e-13 Score=123.46 Aligned_cols=57 Identities=21% Similarity=0.410 Sum_probs=54.3
Q ss_pred CcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 103 NTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLEF 159 (330)
Q Consensus 103 ~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~~l~~ 159 (330)
++|.+|+||+++|+|||||||++|.|+.||+++++++++|+.+++++++.+++.+.+
T Consensus 114 w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 114 WDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp CSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999986653
No 21
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.38 E-value=7.2e-13 Score=119.89 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCch-------hhHHHHHHHHHH
Q psy1611 70 YIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWM-------GKIVASCFSVFA 142 (330)
Q Consensus 70 ~i~~l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~-------gri~~~~~~l~G 142 (330)
++.++.+++++.+++..|++ ++|.||+||+++|+|||||||++|.|.. +|+++++++++|
T Consensus 180 ~~~~~~~~~ga~~~~~~E~~-------------~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~G 246 (280)
T 3ukm_A 180 VTVSCFFFIPAAVFSVLEDD-------------WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLG 246 (280)
T ss_dssp HHHHHHTHHHHHHHHHHSSS-------------CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHhcC-------------CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHH
Confidence 33344455566677777742 7899999999999999999999999995 599999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1611 143 ISFFALPAVRIENLLE 158 (330)
Q Consensus 143 v~~~a~~ig~i~~~l~ 158 (330)
+++++++++.+++.+.
T Consensus 247 l~~~~~~~~~i~~~~~ 262 (280)
T 3ukm_A 247 LIAMLVVLETFCELHE 262 (280)
T ss_dssp HHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998888554
No 22
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.37 E-value=4.4e-13 Score=123.02 Aligned_cols=71 Identities=21% Similarity=0.372 Sum_probs=61.2
Q ss_pred HHHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCchhh------HHHHHHHHHHHHHHH
Q psy1611 74 LGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGK------IVASCFSVFAISFFA 147 (330)
Q Consensus 74 l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gr------i~~~~~~l~Gv~~~a 147 (330)
+.+++++.+++..|+ ++|.||+||+++|+|||||||++|.+..|| +++++++++|+++++
T Consensus 208 ~~l~~ga~~~~~~E~--------------~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a 273 (309)
T 3um7_A 208 LFVLTPTFVFCYMED--------------WSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFA 273 (309)
T ss_dssp HHTHHHHHHHHHHHC--------------CCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--------------CCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHH
Confidence 344455666666664 789999999999999999999999999998 599999999999999
Q ss_pred HHHHHHHHHHH
Q psy1611 148 LPAVRIENLLE 158 (330)
Q Consensus 148 ~~ig~i~~~l~ 158 (330)
++++.+++.+.
T Consensus 274 ~~~~~i~~~~~ 284 (309)
T 3um7_A 274 SVLTTIGNWLR 284 (309)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 99999888554
No 23
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=118.19 Aligned_cols=58 Identities=26% Similarity=0.379 Sum_probs=54.2
Q ss_pred CCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 101 SFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLE 158 (330)
Q Consensus 101 ~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i~~~l~ 158 (330)
.-++|.+|+||+++|+|||||||++|.|+.||+++++++++|+.+++++++.+++.+.
T Consensus 90 ~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 90 WNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4479999999999999999999999999999999999999999999999998887654
No 24
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=99.28 E-value=1e-11 Score=115.25 Aligned_cols=98 Identities=18% Similarity=0.118 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHhHHhhhee---eCCCcc---ccCCCCCCCCcchhhHHhhhheeeccccCCCccC--Cchh
Q psy1611 61 HRQELITTLYIG-FLGLIFSSYFVYLAE---KDEKNE---VVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQ--TWMG 131 (330)
Q Consensus 61 ~~~~l~~~l~i~-~l~~i~~s~~~~~~e---~~~~~~---~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~--t~~g 131 (330)
.++.++.+..+. ++.+++|+.++|++. ++.... ...+.-..+.++.+|+||+++|+|||||||++|. ++.|
T Consensus 41 ~Wr~~llif~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g 120 (340)
T 3sya_A 41 KWRFNLLIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEG 120 (340)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSBSCCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhccccCHHHHHhhhheeeeeecCCCccCcCcCHHH
Confidence 444444333333 345667777777643 332111 1111123568999999999999999999999997 7899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 132 KIVASCFSVFAISFFALPAVRIENLLE 158 (330)
Q Consensus 132 ri~~~~~~l~Gv~~~a~~ig~i~~~l~ 158 (330)
++++.+.+++|++++|+++|.+.+.+.
T Consensus 121 ~~l~~~~~l~G~~l~a~~~giv~ak~s 147 (340)
T 3sya_A 121 IILLLIQSVLGSIVNAFMVGCMFVKIS 147 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999776
No 25
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=99.27 E-value=8.8e-12 Score=124.45 Aligned_cols=55 Identities=20% Similarity=0.454 Sum_probs=50.8
Q ss_pred CcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy1611 103 NTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVR-IENLL 157 (330)
Q Consensus 103 ~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~-i~~~l 157 (330)
++|.+|+||+++|+|||||||++|.|+.||+++++++++|+++++++++. +++.+
T Consensus 50 ~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 50 YSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999987 44433
No 26
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.25 E-value=2.7e-13 Score=126.71 Aligned_cols=72 Identities=26% Similarity=0.478 Sum_probs=61.5
Q ss_pred HHHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHHHHHHHHHHHHHHHHHHH
Q psy1611 74 LGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRI 153 (330)
Q Consensus 74 l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~~~~l~Gv~~~a~~ig~i 153 (330)
+++++++++++.+|+ ++|.+|+||+++|+|||||||++|.|+.||+++++++++|+++++++++.+
T Consensus 29 ~~~~~~~~~~~~~e~--------------~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~ 94 (336)
T 1lnq_A 29 AVIIYGTAGFHFIEG--------------ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERL 94 (336)
T ss_dssp TSHHHHTTTTTTSSS--------------CCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556667665 689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy1611 154 ENLLEF 159 (330)
Q Consensus 154 ~~~l~~ 159 (330)
++.+.+
T Consensus 95 ~~~~~~ 100 (336)
T 1lnq_A 95 LEFLIN 100 (336)
T ss_dssp TTTC--
T ss_pred HHHHHH
Confidence 887664
No 27
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=99.22 E-value=2.5e-11 Score=112.81 Aligned_cols=98 Identities=14% Similarity=0.168 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHhHHhhhe---eeCCCcc----ccCCCCCCCCcchhhHHhhhheeeccccCCCcc--CCch
Q psy1611 61 HRQELITTLYIG-FLGLIFSSYFVYLA---EKDEKNE----VVGGKPNSFNTYADALWWGVITVTTIGYGDAVP--QTWM 130 (330)
Q Consensus 61 ~~~~l~~~l~i~-~l~~i~~s~~~~~~---e~~~~~~----~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~P--~t~~ 130 (330)
.++.++.+..+. ++.+++|+.++|++ +++..+. ...+.-.++.++.+|+||+++|+|||||||++| .++.
T Consensus 43 ~Wr~~ll~f~~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~ 122 (343)
T 3spc_A 43 RWRYMLLLFSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPL 122 (343)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCSEETCCSHHHHHHHHHHHHSCCCCSSSEECSSCHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccCCHHHHhheeeeeeEeecCCCccCCCCCHH
Confidence 444444433333 44566777777653 2221111 001111256899999999999999999999987 4899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 131 GKIVASCFSVFAISFFALPAVRIENLLE 158 (330)
Q Consensus 131 gri~~~~~~l~Gv~~~a~~ig~i~~~l~ 158 (330)
|++++.+.+++|++++|+++|.+.+.+.
T Consensus 123 ~~~l~~~~~l~G~~l~a~~~giv~ak~s 150 (343)
T 3spc_A 123 AVFMVVVQSIVGCIIDSFMIGAIMAKMA 150 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999766
No 28
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=98.23 E-value=1.2e-06 Score=70.53 Aligned_cols=61 Identities=13% Similarity=0.076 Sum_probs=51.1
Q ss_pred CeeeehhhHHhHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy1611 1 MSEKNLIVVVASLIVLTIGSNGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELI 66 (330)
Q Consensus 1 ~~viDll~~iP~~l~~~~~~~~~~~~~~~lr~lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~ 66 (330)
+|++|+++++|+++.+..+ .....+|++|++|++|++|+.|+.+..+.+..++..+.+++.
T Consensus 70 ~niiDllailp~~~~~~~~-----~~l~~lr~lRllRv~Rvlkl~r~~~~l~~l~~~l~~s~~~l~ 130 (132)
T 1ors_C 70 KTLYEIPALVPAGLLALIE-----GHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKLV 130 (132)
T ss_dssp TCGGGTGGGSCHHHHHHHH-----HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 5899999999998777652 234567889999999999999999999999999988887753
No 29
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=97.15 E-value=0.00035 Score=57.02 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=30.0
Q ss_pred eeeehhhHHhHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy1611 2 SEKNLIVVVASLIVLTIGSNGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLL 54 (330)
Q Consensus 2 ~viDll~~iP~~l~~~~~~~~~~~~~~~lr~lRllRllR~~rl~r~~~~~~~l 54 (330)
|++|+++++|++..+..+ .....+|++|++|++|++|+.|..+..+.+
T Consensus 86 ~iiDllailP~~~~~~~~-----~~lr~lRvlRllRv~Rllrl~r~~~~~~~l 133 (147)
T 2kyh_A 86 TLYEIPALVPAGLLALIE-----GHLAGLGLFRLVRLLRFLRILLIISRGSKF 133 (147)
T ss_dssp STTTHHHHCCHHHHHHHH-----HHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999998776542 123345555666666666666555544333
No 30
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=96.76 E-value=0.00071 Score=52.52 Aligned_cols=88 Identities=8% Similarity=-0.026 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHhhhheeeccccCCCc-----cCCchhhHHHHHHH
Q psy1611 65 LITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAV-----PQTWMGKIVASCFS 139 (330)
Q Consensus 65 l~~~l~i~~l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~~iTlTTVGYGDi~-----P~t~~gri~~~~~~ 139 (330)
+..+..++++++.++|.+.....++..|+ +|+++..|+.-.+..+|+-|..|.. ..++...++.+.++
T Consensus 6 ~~nv~~ll~l~~~ifAi~G~~lFg~~~~~-------~F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi 78 (112)
T 4f4l_A 6 VGSVAALLTVVFYIAAVMATNLYGATFPE-------WFGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFI 78 (112)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTTTCHH-------HHSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccc-------cccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33444455555556665544444444443 6889999998777778877765432 23445567777777
Q ss_pred HHH-HHHHHHHHHHHHHHHHH
Q psy1611 140 VFA-ISFFALPAVRIENLLEF 159 (330)
Q Consensus 140 l~G-v~~~a~~ig~i~~~l~~ 159 (330)
++| ..+.++++|++.+.+++
T Consensus 79 ~i~~fi~lNLfiaVi~~~f~~ 99 (112)
T 4f4l_A 79 MLTTFTVLNLFIGIIVDAMAI 99 (112)
T ss_dssp HHHHHHHHHHHTTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777 78899999999987763
No 31
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=96.74 E-value=0.0025 Score=65.60 Aligned_cols=91 Identities=15% Similarity=0.238 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhHHhhheeeCCCccccCCC-----------CCCCCcchhhHHhhhheeeccccCCCccCCchhhHHHH
Q psy1611 68 TLYIGFLGLIFSSYFVYLAEKDEKNEVVGGK-----------PNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVAS 136 (330)
Q Consensus 68 ~l~i~~l~~i~~s~~~~~~e~~~~~~~~~~~-----------~~~f~~y~~aly~~~iTlTTVGYGDi~P~t~~gri~~~ 136 (330)
+|+.+++.+++.++++|++++.....+.... ...-.++.+++|+++.+++..| ++..|+++.+|++++
T Consensus 516 vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~ 594 (823)
T 3kg2_A 516 IWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGG 594 (823)
T ss_dssp HHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSCC-------CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHH
Confidence 4455555566677777777764311111000 0111246789999999999999 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1611 137 CFSVFAISFFALPAVRIENLLEF 159 (330)
Q Consensus 137 ~~~l~Gv~~~a~~ig~i~~~l~~ 159 (330)
+|+++++++.+...|.+++.|+.
T Consensus 595 ~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 595 VWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998874
No 32
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=93.14 E-value=0.027 Score=36.23 Aligned_cols=22 Identities=45% Similarity=0.561 Sum_probs=14.6
Q ss_pred cCCCCCCCCCcchhhHHHhhhh
Q psy1611 238 DRSGNIKPMTIGARLYRVEQQG 259 (330)
Q Consensus 238 ~~~~~~~~~~~~~r~~~~~~~~ 259 (330)
++.+|..++|++|||++||+|+
T Consensus 5 ~k~k~~~~~S~~~Rl~rVE~qV 26 (49)
T 3bj4_A 5 EKSKDRGSNTIGARLNRVEDKV 26 (49)
T ss_dssp -------CCSHHHHHHHHHHHH
T ss_pred ccccCcccchHHHHHHHHHHHH
Confidence 4556788999999999999998
No 33
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=90.49 E-value=0.036 Score=32.71 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=14.6
Q ss_pred CCCCCCcchhhHHHhhhh
Q psy1611 242 NIKPMTIGARLYRVEQQG 259 (330)
Q Consensus 242 ~~~~~~~~~r~~~~~~~~ 259 (330)
..+++|++||+++||+|+
T Consensus 2 ~~~~~Sm~~Rl~kVE~qv 19 (33)
T 2ovc_A 2 AVDEISMMGRVVKVEKQV 19 (33)
T ss_dssp --CHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHH
Confidence 346789999999999997
No 34
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=86.65 E-value=0.22 Score=28.44 Aligned_cols=19 Identities=53% Similarity=0.608 Sum_probs=14.1
Q ss_pred CCCCCCCcchhhHHHhhhh
Q psy1611 241 GNIKPMTIGARLYRVEQQG 259 (330)
Q Consensus 241 ~~~~~~~~~~r~~~~~~~~ 259 (330)
++..++|+++||.|||.+.
T Consensus 1 g~~g~nTIGaRLnRvE~k~ 19 (31)
T 3hfe_A 1 GARGSNTIGARLNRVEDKV 19 (31)
T ss_dssp ----CCSHHHHHHHHHHHH
T ss_pred CCcCcchHHHHHHHHHHHH
Confidence 4677899999999999986
No 35
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=76.44 E-value=2.9 Score=32.65 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy1611 30 IRGIRFLQILRMLHVDRQGGTWRLLGS 56 (330)
Q Consensus 30 lr~lRllRllR~~rl~r~~~~~~~l~~ 56 (330)
++.+|.+|++|++|+.|..+..+.+..
T Consensus 91 l~~lr~lRllRv~Rvlkl~r~~~~l~~ 117 (132)
T 1ors_C 91 LAGLGLFRLVRLLRFLRILLIISRGSK 117 (132)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 566777888888888777766655543
No 36
>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens}
Probab=75.06 E-value=1.6 Score=24.59 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy1611 29 AIRGIRFLQILRMLHVDRQGG 49 (330)
Q Consensus 29 ~lr~lRllRllR~~rl~r~~~ 49 (330)
.++.+|.+|.+|-+|....++
T Consensus 5 ~l~~lrtlR~LRpLr~isr~~ 25 (28)
T 2lcm_A 5 TIKSLRVLRVLRPLKTIKRLP 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhHHHHHHHhcchHHHhhcc
Confidence 455666666666666655544
No 37
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=74.93 E-value=1.7 Score=24.27 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhh
Q psy1611 285 AAMLIQCLWRCFAA 298 (330)
Q Consensus 285 ~~~~~~~~~~~~~~ 298 (330)
+|..||.+||-|-.
T Consensus 8 aA~vIQrA~R~yl~ 21 (27)
T 2kxw_B 8 SAIVIQRAYRRYLL 21 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999999864
No 38
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=73.95 E-value=2.8 Score=40.75 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy1611 30 IRGIRFLQILRMLHVDRQGGTWRLLG 55 (330)
Q Consensus 30 lr~lRllRllR~~rl~r~~~~~~~l~ 55 (330)
++.+|++|++|++|+.|..+..+.+.
T Consensus 305 ~~~lrvlRllRvlRilkL~r~~~~l~ 330 (514)
T 2r9r_B 305 RRVVQIFRIMRILRIFKLSRHSKGLQ 330 (514)
T ss_dssp HHHHHHHHHHGGGGGGGGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45667777777777777766665553
No 39
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=69.85 E-value=6.2 Score=33.55 Aligned_cols=83 Identities=14% Similarity=0.080 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhheeeCCCccccCCCCCCCCcchhhHHhh
Q psy1611 33 IRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWG 112 (330)
Q Consensus 33 lRllRllR~~rl~r~~~~~~~l~~~l~~~~~~l~~~l~i~~l~~i~~s~~~~~~e~~~~~~~~~~~~~~f~~y~~aly~~ 112 (330)
+|.+|++|++|+.|..+..+.+........+..-.+..+.++..++.-...-..-.-..+ ...+..+++..+
T Consensus 98 ~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~~--------~~~~~F~~~~~a 169 (229)
T 4dxw_A 98 FLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGN--------DDPSRWGDLGIS 169 (229)
T ss_dssp --CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--------TSCTTTSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------CCcccccCHHHH
Confidence 466688888888887777766654444444444443333322222222111111111111 222345666666
Q ss_pred hheeeccccCC
Q psy1611 113 VITVTTIGYGD 123 (330)
Q Consensus 113 ~iTlTTVGYGD 123 (330)
+.|+-.+--||
T Consensus 170 ~~~lf~~~t~~ 180 (229)
T 4dxw_A 170 LITLFQVLTLS 180 (229)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHccC
Confidence 66666555554
No 40
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=69.28 E-value=2.2 Score=37.74 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHH
Q psy1611 34 RFLQILRMLHVDRQGGTWRLLG 55 (330)
Q Consensus 34 RllRllR~~rl~r~~~~~~~l~ 55 (330)
+++|++|++|+.|..+..+.+.
T Consensus 114 ~~lr~~RilR~lrl~~~~~~l~ 135 (285)
T 3rvy_A 114 EILRVLRVLRLFRLVTAVPQMR 135 (285)
T ss_dssp THHHHHGGGGGGHHHHSSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666555554443
No 41
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=67.47 E-value=3.1 Score=24.02 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhhc
Q psy1611 285 AAMLIQCLWRCFAAD 299 (330)
Q Consensus 285 ~~~~~~~~~~~~~~~ 299 (330)
+|+.||.+||-|-..
T Consensus 8 aA~vIQrA~R~yl~r 22 (31)
T 2l53_B 8 SAMVIQRAFRRHLLQ 22 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999998654
No 42
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=65.94 E-value=6.7 Score=31.27 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH
Q psy1611 30 IRGIRFLQILRMLHVDRQGGTW 51 (330)
Q Consensus 30 lr~lRllRllR~~rl~r~~~~~ 51 (330)
++.+|++|++|++|+.|.....
T Consensus 106 lr~lRvlRllRv~Rllrl~r~~ 127 (147)
T 2kyh_A 106 LAGLGLFRLVRLLRFLRILLII 127 (147)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666665544
No 43
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=64.38 E-value=4.1 Score=25.57 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=14.7
Q ss_pred hhcchHHHHHHHHHHHhhh
Q psy1611 280 RQIPAAAMLIQCLWRCFAA 298 (330)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~ 298 (330)
.++..+++.||..||.|-.
T Consensus 25 ~~~~~aai~IQ~~~Rg~~~ 43 (48)
T 1n2d_C 25 EMKVNCATLLQAAYRGHSI 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHH
Confidence 3445699999999998743
No 44
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=60.15 E-value=22 Score=29.75 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhhhH
Q psy1611 32 GIRFLQILRMLHVDRQGGT 50 (330)
Q Consensus 32 ~lRllRllR~~rl~r~~~~ 50 (330)
.+|++|++|++|+.|..+.
T Consensus 98 ~lr~lRllRllR~~r~~~~ 116 (223)
T 1orq_C 98 LFRLVRLLRFLRILLIISR 116 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566666666666555443
No 45
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=39.25 E-value=21 Score=34.43 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=28.8
Q ss_pred CcchhhHHhhhheeeccccCCCccC--CchhhHHHHHHHHHHHH
Q psy1611 103 NTYADALWWGVITVTTIGYGDAVPQ--TWMGKIVASCFSVFAIS 144 (330)
Q Consensus 103 ~~y~~aly~~~iTlTTVGYGDi~P~--t~~gri~~~~~~l~Gv~ 144 (330)
+.+..|++-++...||.||...--. ++..+.+.+++|++|.+
T Consensus 305 ~~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~ 348 (494)
T 3pjz_A 305 DAFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGC 348 (494)
T ss_dssp HHHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSC
T ss_pred HHHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCC
Confidence 4567787778888899898654333 44566777777777743
No 46
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=37.39 E-value=36 Score=32.73 Aligned_cols=47 Identities=19% Similarity=0.123 Sum_probs=35.7
Q ss_pred cchhhHHhhhheeecccc--CC----CccCCchhhHHHHHHHHHH-HHHHHHHH
Q psy1611 104 TYADALWWGVITVTTIGY--GD----AVPQTWMGKIVASCFSVFA-ISFFALPA 150 (330)
Q Consensus 104 ~y~~aly~~~iTlTTVGY--GD----i~P~t~~gri~~~~~~l~G-v~~~a~~i 150 (330)
++.+|+.=++.++.|||- |. ...-++.+|++.++.|++| +..+++.+
T Consensus 423 ~~~~a~~~v~Sal~nvG~s~G~vg~~~~~L~~~~K~vl~~~M~~GRLei~tvl~ 476 (494)
T 3pjz_A 423 DELSAFSAVAATLNNLGPGLGEVALHFGDVNDKAKWVLIVSMLFGRLEIFTLLI 476 (494)
T ss_dssp CHHHHHHHHHHHTTTCCSCCSSSCCCCSSSCHHHHHHHHHHHHHHHTTTHHHHT
T ss_pred cHHHHHHHHHHHHcCCCCcccccCCCcccCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 468888888888998884 43 2345889999999999999 55555544
No 47
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=36.62 E-value=16 Score=23.81 Aligned_cols=15 Identities=33% Similarity=0.237 Sum_probs=10.1
Q ss_pred chHHHHHHHHHHHhh
Q psy1611 283 PAAAMLIQCLWRCFA 297 (330)
Q Consensus 283 ~~~~~~~~~~~~~~~ 297 (330)
..++++||..||.|-
T Consensus 5 ~~aai~IQ~~~Rg~~ 19 (58)
T 2ix7_C 5 RAACIRIQKTIRGWL 19 (58)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346777777777653
No 48
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=31.45 E-value=49 Score=20.43 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=22.4
Q ss_pred HHHHHHHHhccchhhHhhHHHHHHHHHhhh
Q psy1611 198 VRDVIEQYSQGHLNMMVRIKELQRRLDQTL 227 (330)
Q Consensus 198 v~d~~e~~~~g~~d~~~~i~~lq~~ld~~~ 227 (330)
+-|....++..+.++..|+..|+.++|.+.
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 446666677777788888888888888753
No 49
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=30.60 E-value=22 Score=32.13 Aligned_cols=21 Identities=0% Similarity=-0.149 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHH
Q psy1611 34 RFLQILRMLHVDRQGGTWRLL 54 (330)
Q Consensus 34 RllRllR~~rl~r~~~~~~~l 54 (330)
|.+|++|++|+.|..+..+.+
T Consensus 95 ~~~r~lr~~R~lrl~r~~~~~ 115 (355)
T 3beh_A 95 PDWSLYCAVWLLKPLRDSTFF 115 (355)
T ss_dssp GGGGGGGGGGGSHHHHTCSSH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 445666666666655544433
No 50
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=26.78 E-value=27 Score=27.95 Aligned_cols=22 Identities=5% Similarity=-0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy1611 27 ASAIRGIRFLQILRMLHVDRQG 48 (330)
Q Consensus 27 ~~~lr~lRllRllR~~rl~r~~ 48 (330)
..++.++.++|++|++|+.|..
T Consensus 18 ~dli~~lp~lr~lRllRi~ril 39 (155)
T 2a9h_A 18 GRLIKHMPPMLSGLLARLVKLL 39 (155)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3355677777778888877765
No 51
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=23.72 E-value=44 Score=17.72 Aligned_cols=13 Identities=31% Similarity=0.286 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHh
Q psy1611 284 AAAMLIQCLWRCF 296 (330)
Q Consensus 284 ~~~~~~~~~~~~~ 296 (330)
-|+.+||+.||-.
T Consensus 7 YA~llI~d~~r~~ 19 (23)
T 3dvk_B 7 YAAMMIMDYYKQS 19 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3788999999875
No 52
>2k44_A Hsapbk, K+-channel voltage-sensor paddle domain of calcium-activated potassium channel subunit...; membrane, micelle, solution structure; NMR {Synthetic}
Probab=21.91 E-value=7.4 Score=21.56 Aligned_cols=12 Identities=50% Similarity=1.146 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHH
Q psy1611 32 GIRFLQILRMLH 43 (330)
Q Consensus 32 ~lRllRllR~~r 43 (330)
.+||+|.+|++.
T Consensus 14 gLRFLRALRlm~ 25 (28)
T 2k44_A 14 GLRFLRALRLIQ 25 (28)
T ss_dssp HSTTCTTHHHHS
T ss_pred HHHHHHHHHccc
Confidence 478888888764
No 53
>3sjq_C Small conductance calcium-activated potassium CHA protein 2; protein-protein complex, EF hand, calmodulin, calcium bindin binding protein; HET: PHU; 1.90A {Rattus norvegicus}
Probab=21.37 E-value=48 Score=23.78 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=18.6
Q ss_pred hhhhhhcchHHHHHHHHHHHhh
Q psy1611 276 KHFNRQIPAAAMLIQCLWRCFA 297 (330)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~ 297 (330)
+..++.|++||..+|+.|..|-
T Consensus 4 qltKrvK~AAAnVLrEtWliyK 25 (87)
T 3sjq_C 4 QLTKRVKNAAANVLRETWLIYK 25 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 3457789999999999998886
No 54
>1g4y_B Calcium-activated potassium channel RSK2; small-conductance calcium-activated potassium channel, channel gating, signalin; 1.60A {Rattus norvegicus} SCOP: f.15.1.1 PDB: 1kkd_A 1qx7_D
Probab=20.38 E-value=51 Score=24.27 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=19.4
Q ss_pred hhhhhhcchHHHHHHHHHHHhhhc
Q psy1611 276 KHFNRQIPAAAMLIQCLWRCFAAD 299 (330)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~ 299 (330)
+..++.|++||...|..|..|---
T Consensus 22 qltk~~K~aAAnVLrEtWliyK~t 45 (101)
T 1g4y_B 22 QLTKRVKNAAANVLRETWLIYKNT 45 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999997543
Done!