RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1611
(330 letters)
>gnl|CDD|217598 pfam03520, KCNQ_channel, KCNQ voltage-gated potassium channel.
This family matches to the C-terminal tail of KCNQ type
potassium channels.
Length = 201
Score = 168 bits (428), Expect = 2e-51
Identities = 59/105 (56%), Positives = 78/105 (74%)
Query: 154 ENLLEFEVRLRSLTDVHRNAIRAIRKIKYFVARRKFQQARKPYDVRDVIEQYSQGHLNMM 213
E L + LT H+ AIRAIR++KYFVA+RKF++A KPYDV+DVIEQYS GHL+M+
Sbjct: 58 EKELPCITTVEDLTPAHKTAIRAIRRMKYFVAKRKFKEALKPYDVKDVIEQYSAGHLDML 117
Query: 214 VRIKELQRRLDQTLGKPGSYLAGIDRSGNIKPMTIGARLYRVEQQ 258
VRIK LQRRLDQ LGK GS + +RS + +++G R+ +VE+Q
Sbjct: 118 VRIKSLQRRLDQILGKGGSKIDKKERSKDRDDISMGGRVVKVERQ 162
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel. This family includes the two
membrane helix type ion channels found in bacteria.
Length = 74
Score = 61.5 bits (150), Expect = 2e-12
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 73 FLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGK 132
L LIF + + L E+ + DAL++ +T+TTIGYGD VP T G+
Sbjct: 4 LLVLIFGTVYYSLEEE-----------GWGWDFLDALYFSFVTLTTIGYGDIVPLTDAGR 52
Query: 133 IVASCFSVFAISFFAL 148
+ + + I F L
Sbjct: 53 LFTIIYILIGIPLFLL 68
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein. This family contains
Sodium, Potassium, Calcium ion channels. This family is
6 transmembrane helices in which the last two helices
flank a loop which determines ion selectivity. In some
sub-families (e.g. Na channels) the domain is repeated
four times, whereas in others (e.g. K channels) the
protein forms as a tetramer in the membrane. A bacterial
structure of the protein is known for the last two
helices but is not the Pfam family due to it lacking the
first four helices.
Length = 194
Score = 61.9 bits (151), Expect = 2e-11
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 20/159 (12%)
Query: 6 LIVVVASLIVLTIGSNGQ----IFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIH 61
+VV+ SL+ L + G+ + +R +R L++LR R LL S+
Sbjct: 37 FLVVLPSLVSLILFLLGEDSGLLRVLRLLRLLRLLRLLRRFPGLR-----TLLQSLGRSL 91
Query: 62 RQELITTLYIGFLGLIFSS-----YFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITV 116
+ L L + L IF+ + L + +KNE ++F++Y +AL W T+
Sbjct: 92 KSLLNLLLLLLLLLFIFAIIGVQLFGGELDKCCDKNENPINGNSNFDSYGEALLWLFRTL 151
Query: 117 TTIGYGDA-----VPQTWMGKIVASCFSVF-AISFFALP 149
TT G+GD VP T +GKI F + + L
Sbjct: 152 TTEGWGDVMYDTLVPGTVLGKIFFVIFIILGGVLLLNLL 190
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 38.3 bits (89), Expect = 0.006
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 105 YADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISF-FALPAVRIENLLEFEVRL 163
Y A++W + T+TT+GYGD + I F +F + F L A I N+ V
Sbjct: 251 YISAIYWSITTMTTVGYGDLHAVNTIEMI----FIIFYMLFNLGLTAYLIGNMTNLVVEG 306
Query: 164 RSLTDVHRNAIRAIRKIKYFVAR 186
T RN+I A FV R
Sbjct: 307 TRRTMEFRNSIEAASN---FVGR 326
>gnl|CDD|223822 COG0751, GlyS, Glycyl-tRNA synthetase, beta subunit [Translation,
ribosomal structure and biogenesis].
Length = 691
Score = 32.2 bits (74), Expect = 0.37
Identities = 36/154 (23%), Positives = 55/154 (35%), Gaps = 36/154 (23%)
Query: 122 GDAVPQTWMGKIVA---------SCFSV----------FAISFFALPAVRIENLLEFEVR 162
GD +P T +G +VA F + +A+ AL +RI +LE +
Sbjct: 441 GDELPSTPVGAVVALADKLDTLVGFFGIGLIPTGSKDPYALRRAALGILRI--ILEKNLD 498
Query: 163 L----------RSLTDVHRNAIRAIRKIKYFVARRK--FQQARKPYDVRD-VIEQYSQGH 209
L S NA + +F+ R + Q D+ D V+
Sbjct: 499 LDLEELLDKAVASFKSKLTNAKVLEELLDFFLGRLRTYLQDEGYRKDIIDAVLALNPTDL 558
Query: 210 LNMMVRIKELQRRLDQTLGKPGSYLAGIDRSGNI 243
L+++ R + LQ LD K A R NI
Sbjct: 559 LDIIARAEALQEFLDLPEAKA--LAAANKRVSNI 590
>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional.
Length = 393
Score = 31.9 bits (73), Expect = 0.40
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 71 IGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWM 130
I L+F S F L D + + A ++ ++T++T+GYGD VP +
Sbjct: 142 ISITSLLFYSTFGALYLGDGFSPPIESLST-------AFYFSIVTMSTVGYGDIVPVSES 194
Query: 131 GKIVASCFSVFAISFFA 147
++ + I+ FA
Sbjct: 195 ARLFTISVIILGITVFA 211
>gnl|CDD|131967 TIGR02921, PEP_integral, PEP-CTERM family integral membrane
protein. Members of this protein family, found in three
different species so far, have a PEP-CTERM sequence at
the carboxyl-terminus (see model TIGR02595), but are
unusual among PEP-CTERM proteins in having multiple
predicted transmembrane segments. The function is
unknown. It is proposed that a member of the EpsH
family, to be designated exosortase (see TIGR02602),
recognizes and cleaves PEP-CTERM proteins in a manner
analogous to the cleavage of LPXTG proteins by sortase
(see Haft, et al., 2006).
Length = 952
Score = 31.6 bits (71), Expect = 0.76
Identities = 16/65 (24%), Positives = 28/65 (43%)
Query: 105 YADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLEFEVRLR 164
+A L+ GV + IG M ++ ++ ++FFA+PA L E+
Sbjct: 121 FAACLFGGVASRFKIGLQWLQLLAAMLMLLFGIYAAALLAFFAIPAAAGFFELLEEIEFE 180
Query: 165 SLTDV 169
L D+
Sbjct: 181 HLGDI 185
>gnl|CDD|204637 pfam11391, DUF2798, Protein of unknown function (DUF2798). This
family of proteins has no known function.
Length = 60
Score = 28.3 bits (64), Expect = 0.84
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 112 GVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVR 152
GVIT+ +G+GD W+ + + F I P VR
Sbjct: 13 GVITLLNLGFGDGFLSRWLKAWLLAWPVAFPIVLLVAPLVR 53
>gnl|CDD|224147 COG1226, Kch, Kef-type K+ transport systems, predicted NAD-binding
component [Inorganic ion transport and metabolism].
Length = 212
Score = 30.5 bits (68), Expect = 1.1
Identities = 12/81 (14%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 102 FNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAV-RIENLLEFE 160
A L V T+TT+G + VP T+ ++ + ++ + ++ A+ + +
Sbjct: 115 ILARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGDSVEAILALIEIRRDR 174
Query: 161 VRLRSLTDVHRNAIRAIRKIK 181
+ ++ + A+ ++
Sbjct: 175 LADLEELELAGVSPLALSELS 195
>gnl|CDD|213390 cd12147, Cep3_C, C-terminal domain of the Cep3, a subunit of the
yeast centromere-binding factor 3. Cep3, together with
Skp1, Ctf13, and Ndc10, forms the yeast
centromere-binding factor 3 (CBF3) which initiates
kinetochore assembly by binding to the CDEIII locus of
centromeric DNA. Cep3 is comprised of two domains, the
N-terminal DNA-binding module, a Zn2Cys6-cluster,
C-terminal domain, which dimerizes and is believed to be
involved in the recruitment of the Skp1-Ctf1
heterodimer.
Length = 552
Score = 30.8 bits (70), Expect = 1.2
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 68 TLYIGFLGLIFSSYFV---YLAEKDEKNEVVGGKPNSFNTYADALWWGVITVT 117
LY G L I Y Y +++KNE K + Y DAL W + T+
Sbjct: 70 PLYFGCLSDISELYLQLERYWDRREDKNETTV-KSSVDEYYWDALLWSIFTMA 121
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 30.4 bits (69), Expect = 1.4
Identities = 28/107 (26%), Positives = 39/107 (36%), Gaps = 23/107 (21%)
Query: 151 VRIENLLEFEVRLRSLTDVHRNAIRAIRK------------IKYFVARRKFQQARK---- 194
+ E L FE R L R IR I +FV + + +K
Sbjct: 149 INREKLEAFE---RELWRACRGYIRQAEIEEPLEDPKKTVFIIFFVGKEDLDKVKKILDS 205
Query: 195 ----PYDVRDVIEQYSQGHLNMMVRIKELQRRLDQTLGKPGSYLAGI 237
YDV + + S+ + RI+ELQR L+QT L I
Sbjct: 206 FGFELYDVPETEGERSELISKVNKRIEELQRVLEQTESHLEKVLVKI 252
>gnl|CDD|134373 PRK00753, psbL, photosystem II reaction center L; Provisional.
Length = 39
Score = 27.0 bits (60), Expect = 1.5
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 5/21 (23%)
Query: 67 TTLYIGFL-----GLIFSSYF 82
T+LY+G L G++FSSYF
Sbjct: 17 TSLYLGLLLVFVLGILFSSYF 37
>gnl|CDD|215050 PLN00077, PLN00077, photosystem II reaction centre W protein;
Provisional.
Length = 128
Score = 28.5 bits (63), Expect = 2.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 65 LITTLYIGFLGLIFSSYFVYLAEKDEKNEVVG 96
L+ + +G GLI+S Y Y ++ E E G
Sbjct: 94 LLGWILLGVFGLIWSLYTTYTSDLPEDEEDSG 125
>gnl|CDD|216279 pfam01067, Calpain_III, Calpain large subunit, domain III. The
function of the domain III and I are currently unknown.
Domain II is a cysteine protease and domain IV is a
calcium binding domain. Calpains are believed to
participate in intracellular signaling pathways mediated
by calcium ions.
Length = 142
Score = 28.4 bits (64), Expect = 2.8
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 238 DRSGNIKPMTIGARLYRVEQQGILGSGFALKVQQKQRQKHF 278
R +TIG +Y+V+ Q L F + + R +
Sbjct: 59 KRKEGADNLTIGFAIYKVDPQKELPRKFFSQNRSIARSSTY 99
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 29.6 bits (67), Expect = 2.9
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 170 HRNAIRAIRKIKYFVARRKFQQARKPYDVR 199
+ A+R +RK F+AR K ++ ++
Sbjct: 762 RKGAMRELRKDNRFIAREKLKEKKEKDAEY 791
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 29.2 bits (66), Expect = 3.4
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 202 IEQYSQGHLNMMVRIKELQRRLDQTLGKPGSYLAGIDRSG 241
I QY GHL+++ + ++++ LG PG +L G R G
Sbjct: 431 IPQYLLGHLDVLEAAE----KMEKDLGLPGLFLGGNYRGG 466
>gnl|CDD|225008 COG2097, RPL31A, Ribosomal protein L31E [Translation, ribosomal
structure and biogenesis].
Length = 89
Score = 27.3 bits (61), Expect = 4.1
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 158 EFEVRLRSLTDV--HRNAIRAIRKIKYFVAR 186
+ + LR V + A RA++ I+ FVAR
Sbjct: 10 IYTIPLRRAKKVPRTKRAPRAVKIIRKFVAR 40
>gnl|CDD|177712 PLN00092, PLN00092, photosystem I reaction center subunit V (PsaG);
Provisional.
Length = 137
Score = 27.5 bits (61), Expect = 5.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 71 IGFLGLIFSSYFVYLAEKDEKNE 93
+G GLI+S YFVY + +E E
Sbjct: 110 LGVFGLIWSLYFVYTSTLEEDEE 132
>gnl|CDD|234925 PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.
Length = 682
Score = 28.5 bits (65), Expect = 5.6
Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 37/152 (24%)
Query: 122 GDAVPQTWMGKIVA---------SCFSV----------FAISFFALPAVRIENLLEFEVR 162
GD +P T +G VA F + FA+ AL +RI +LE +
Sbjct: 437 GDELPSTPVGAAVALADKLDTLVGIFGIGEIPTGSKDPFALRRAALGILRI--ILEKGLD 494
Query: 163 L-------RSLTDVHRNAIRAIRKIKYFVARRKFQQARKPYDVRDVIE---QYSQGHLNM 212
L ++++ + N + + + +F+ R K + DVI+ L
Sbjct: 495 LDLDELIEKAVSLYNANVLDDV--LDFFLDRLKALLQDEGIRY-DVIDAVLALRPDDLAD 551
Query: 213 MV-RIKELQRRLDQTLGKPGSYLAGIDRSGNI 243
+ R++ L K A R NI
Sbjct: 552 LDARVEALSAFRKLPEFKA--LAAANKRVSNI 581
>gnl|CDD|178538 PLN02952, PLN02952, phosphoinositide phospholipase C.
Length = 599
Score = 28.4 bits (63), Expect = 6.4
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 187 RKFQ--QARKPYDVRDVIEQYSQGHLNMMVRIKELQRRLDQTLGKPGSYLAGIDR 239
RKF+ +A P DV+DV ++S G +M +L+R L + LA R
Sbjct: 27 RKFKITEAEPPDDVKDVFCKFSVGGGHMGA--DQLRRFLVLHQDELDCTLAEAQR 79
>gnl|CDD|111185 pfam02263, GBP, Guanylate-binding protein, N-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 264
Score = 27.7 bits (62), Expect = 7.0
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 266 ALKVQQKQRQKHFNRQIPAAAMLIQCLWRCFAADKCF 302
LK+ Q Q ++ + + +C+ F KCF
Sbjct: 186 RLKLSQGQHEE-----LQNFNLPRECIRSFFPKRKCF 217
>gnl|CDD|234916 PRK01192, PRK01192, 50S ribosomal protein L31e; Reviewed.
Length = 89
Score = 26.4 bits (59), Expect = 7.3
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 153 IENLLEFE--VRLRSLTDV--HRNAIRAIRKIKYFVAR 186
+ + E + LR + V + A RA++ ++ F+AR
Sbjct: 2 AKEVEERIYTIPLRDVKKVPRTKRADRAVKLVREFLAR 39
>gnl|CDD|227645 COG5340, COG5340, Predicted transcriptional regulator
[Transcription].
Length = 269
Score = 27.6 bits (61), Expect = 8.0
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 15/97 (15%)
Query: 142 AISFFALPAVRIENLLEFEVRLRSLTDVHRNAIRAIRKIKYFVARRKFQQARKPYDVRDV 201
I++++ A+ + L E + R R I + Y VA RKF +
Sbjct: 97 YIAYYS--ALSLHGLTEQVPSTVFVVTPRRAKKREIHGVPYRVAERKFFGYK-----PTS 149
Query: 202 IEQYSQGHLNMMVRIKELQRRLDQTLGKPGSYLAGID 238
IE V + L + + KP Y GI
Sbjct: 150 IEGTV-------VPVTTLAKTIVDCADKP-EYCGGIR 178
>gnl|CDD|201722 pfam01303, Egg_lysin, Egg lysin (Sperm-lysin). Egg lysin creates a
hole in the envelope of the egg thereby allowing the
sperm to pass through the envelope and fuse with the
egg.
Length = 121
Score = 26.5 bits (59), Expect = 9.5
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 149 PAVRIENLLEFEVRLRSLTDVHRNAIRAI-RKIKYFVARRKFQ 190
A+++ + + +L H + + +K YFV RR+ Q
Sbjct: 7 VALKVGIIAGLDRKLAKWLRRHGSRLSPPQKKTLYFVNRRRMQ 49
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.139 0.417
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,277,938
Number of extensions: 1734393
Number of successful extensions: 2164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2155
Number of HSP's successfully gapped: 55
Length of query: 330
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 233
Effective length of database: 6,635,264
Effective search space: 1546016512
Effective search space used: 1546016512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.4 bits)