RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1611
(330 letters)
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 127 bits (321), Expect = 2e-35
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Query: 4 KNLIVVVASL-IVLTIGSNGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHR 62
K L + A + L G + R +R L+ LR+L + +G + L ++
Sbjct: 72 KTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRG--SKFLSAIADAAD 129
Query: 63 QE-LITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGY 121
+ L +++ ++ +Y+ E + +S + DALWW V+T TT+GY
Sbjct: 130 KIRFYHLFGAVMLTVLYGAFAIYIVEYPDP-------NSSIKSVFDALWWAVVTATTVGY 182
Query: 122 GDAVPQTWMGKIVASCFSVFAISFFALPA 150
GD VP T +GK++ + IS L
Sbjct: 183 GDVVPATPIGKVIGIAVMLTGISALTLLI 211
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 130 bits (328), Expect = 3e-35
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 7/126 (5%)
Query: 25 FAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYFVY 84
F + +L R + +LG V+ + LI + + L + Y
Sbjct: 89 FLLDGSPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAY 148
Query: 85 LAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAIS 144
+ E+D + P F + A+WW V+T++T GYGD +PQ++ G+++A + I
Sbjct: 149 VIERDIQ-------PEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIG 201
Query: 145 FFALPA 150
F L A
Sbjct: 202 IFGLWA 207
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 116 bits (292), Expect = 4e-32
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 18/134 (13%)
Query: 19 GSNGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGS--VVFIHRQELITTLYIGFLGL 76
G G+ + + + R++ +LL +H + + + L
Sbjct: 13 GIEGRGRLIKHMPPMLSGLLARLV---------KLLLGRHGSALHWRAAGAATVLLVIVL 63
Query: 77 IFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVAS 136
+ SY LAE+ + +Y DALWW V T TT+GYGD P T G+ VA
Sbjct: 64 LAGSYLAVLAERGAP-------GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAV 116
Query: 137 CFSVFAISFFALPA 150
V I+ + L
Sbjct: 117 VVMVAGITSYGLVF 130
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 113 bits (284), Expect = 3e-31
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 60 IHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTI 119
+H + + + L+ SY LAE+ TY ALWW V T TT+
Sbjct: 3 LHWRAAGAATVLLVIVLLAGSYLAVLAERGAP-------GAQLITYPRALWWSVETATTV 55
Query: 120 GYGDAVPQTWMGKIVASCFSVFAISFFALPA 150
GYGD P T G++VA V I+ F L
Sbjct: 56 GYGDLYPVTLWGRLVAVVVMVAGITSFGLVT 86
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 107 bits (269), Expect = 4e-29
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 16/122 (13%)
Query: 30 IRGIRFLQILRMLHVDRQGGTWRLLGSV-VFIHRQELITTLYIGFLGLIFSSYFVYLAEK 88
+ + + R++ + LLG +H + + + L+ SY LAE+
Sbjct: 1 MAPMLSGLLARLVKL--------LLGRHGSALHWRAAGAATVLLVIVLLAGSYLAVLAER 52
Query: 89 DEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFAL 148
TY ALWW T TT+ YGD P T G++VA V I+ F L
Sbjct: 53 GAP-------GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGL 105
Query: 149 PA 150
Sbjct: 106 VT 107
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 108 bits (272), Expect = 5e-29
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 16/119 (13%)
Query: 33 IRFLQILRMLHVDRQGGTWRLLGSV-VFIHRQELITTLYIGFLGLIFSSYFVYLAEKDEK 91
+ + R++ + LLG + + + + L+ SY LAE+
Sbjct: 10 MLSGLLARLVKL--------LLGRHGSALQWRAAGAATVLLVIVLLAGSYLAVLAERGAP 61
Query: 92 NEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPA 150
TY ALWW V T TT+GYGD P T G++VA V I+ F L
Sbjct: 62 -------GAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVT 113
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 104 bits (262), Expect = 3e-28
Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 60 IHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTI 119
H +E L +S AE+ + +Y DA+WW V T TT+
Sbjct: 3 DHEREAQKAEEELQKVLEEASKKAVEAERGAP-------GAALISYPDAIWWSVETATTV 55
Query: 120 GYGDAVPQTWMGKIVASCFSVFAISFFALPA 150
GYGD P T G+ VA I FAL
Sbjct: 56 GYGDRYPVTEEGRKVAEQVMKAGIEVFALVT 86
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 104 bits (261), Expect = 3e-25
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 7/138 (5%)
Query: 13 LIVLTIGSNGQIFAASAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIG 72
L ++ R ++ILR+ + R ++LG + +EL ++
Sbjct: 291 LTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFL 350
Query: 73 FLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGK 132
F+G+I S VY AE DE+ + F + DA WW V+++TT+GYGD VP T GK
Sbjct: 351 FIGVILFSSAVYFAEADER-------DSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGK 403
Query: 133 IVASCFSVFAISFFALPA 150
IV S ++ + ALP
Sbjct: 404 IVGSLCAIAGVLTIALPV 421
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 62.4 bits (152), Expect = 8e-13
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 14/93 (15%)
Query: 65 LITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDA 124
L + +I+ + + E + ++ +L+W +T+ T+GYGD
Sbjct: 3 ATRILLLVLAVIIYGTAGFHFIEGE--------------SWTVSLYWTFVTIATVGYGDY 48
Query: 125 VPQTWMGKIVASCFSVFAISFFALPAVRIENLL 157
P T +G V I FA+ R+ L
Sbjct: 49 SPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 60.3 bits (146), Expect = 2e-11
Identities = 20/134 (14%), Positives = 45/134 (33%), Gaps = 15/134 (11%)
Query: 48 GGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYAD 107
R+L + + + + L++ + S Y + D
Sbjct: 9 LTLKRMLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYSTVEG-------------LRPLD 55
Query: 108 ALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLEFEVRLRSLT 167
AL++ V+T+TT+G G+ PQT GK+ + I ++ + ++
Sbjct: 56 ALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKL--AVNVQLPSILSN 113
Query: 168 DVHRNAIRAIRKIK 181
+ ++
Sbjct: 114 RKKETDAYRLEVME 127
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 58.7 bits (142), Expect = 2e-11
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 60 IHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTI 119
+ + + L++ + + S Y + DAL++ V+T+TT+
Sbjct: 1 MAKDKEFQVLFVLTILTLISGTIFYSTVEGL-------------RPIDALYFSVVTLTTV 47
Query: 120 GYGDAVPQTWMGKIVASCFSVFAISFFALPAVRI 153
GYGD PQT GKI + I ++
Sbjct: 48 GYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKL 81
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 59.1 bits (143), Expect = 3e-11
Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
Query: 52 RLLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWW 111
R+L + + + + L++ + + S Y + DAL++
Sbjct: 10 RMLRACLRAWKDKEFQVLFVLTILTLISGTIFYSTVEG-------------LRPIDALYF 56
Query: 112 GVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLEFEVRLRSLT 167
V+T+TT+G G+ PQT GKI + I ++ ++ L +L
Sbjct: 57 SVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNLV 112
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 60.5 bits (146), Expect = 1e-10
Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 6/112 (5%)
Query: 39 LRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGK 98
+ L ++++G ++ + IT + +L YLA D
Sbjct: 23 ITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVIEN----- 77
Query: 99 PNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPA 150
++ DA ++ V T+ TIGYG +P + + + ++ + A+ A
Sbjct: 78 -ARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAA 128
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 60.5 bits (146), Expect = 1e-10
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 13/124 (10%)
Query: 34 RFLQ---ILRMLHVDRQGGTWRLLG----SVVFIHRQELITTLYIGFLGLIFSSYFVYLA 86
RF+ + H + T R L ++V + + +L + FL L + +Y+
Sbjct: 7 RFVDKNGRCNVQHGNLGSETSRYLSDLFTTLVDLKWRWFFVSLAVLFLLLNTAFATLYML 66
Query: 87 EKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFF 146
+ P F A ++ V T+ T+GYGD PQT +A+ +S
Sbjct: 67 GSAP---IANQFPAGF---GGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSI 120
Query: 147 ALPA 150
AL
Sbjct: 121 ALAT 124
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 59.8 bits (144), Expect = 2e-10
Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 9/122 (7%)
Query: 31 RGIRFLQ--ILRMLHVDRQGGTWR-LLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAE 87
RG R + ++ WR L + + +L F+ +Y
Sbjct: 26 RGGRRIWSGTREVIAYGMPASVWRDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLG 85
Query: 88 KDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFA 147
S + A ++ V T+ T+GYGD PQT +A+ +S A
Sbjct: 86 DAPIA------NQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIA 139
Query: 148 LP 149
L
Sbjct: 140 LS 141
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 58.6 bits (142), Expect = 6e-10
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 51 WRLLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALW 110
++ + + T + + L +I + + E ++ +L+
Sbjct: 5 IEIIRKHLPRVLKVPATRILLLVLAVIIYGTAGFHFIEGE-------------SWTVSLY 51
Query: 111 WGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFAL 148
W +T+ T+GYGD P T +G V I FA+
Sbjct: 52 WTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAV 89
>3ukm_A Potassium channel subfamily K member 1; membrane protein,
eukaryotic, two-pore DO potassium channel, K2P channel,
membrane; HET: UND; 3.40A {Homo sapiens}
Length = 280
Score = 41.3 bits (96), Expect = 2e-04
Identities = 19/76 (25%), Positives = 29/76 (38%)
Query: 97 GKPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENL 156
N + AL++ ++T GYG VP + GK +SV I F L +
Sbjct: 86 ASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQR 145
Query: 157 LEFEVRLRSLTDVHRN 172
+ V R + H
Sbjct: 146 ITVHVTRRPVLYFHIR 161
Score = 41.0 bits (95), Expect = 3e-04
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 104 TYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFAL 148
+ ++ ++ I+++TIG GD VP + + + + L
Sbjct: 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLL 245
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 38.6 bits (89), Expect = 0.002
Identities = 16/122 (13%), Positives = 39/122 (31%), Gaps = 12/122 (9%)
Query: 39 LRMLHVDRQGGTWR--LLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLA--------EK 88
+ ++D + + + + V I + ++ + FL ++ E
Sbjct: 19 VEFTNMDDKPQRYIADMFTTCVDIRWRYMLLLFSLAFLVSWLLFGLIFWLIALIHGDLEN 78
Query: 89 DEKNEVVGGKPNSFNTYADALWWGVITVTTIGYG--DAVPQTWMGKIVASCFSVFAISFF 146
++ N + A + + T TTIGYG + + + S+
Sbjct: 79 PGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIID 138
Query: 147 AL 148
+
Sbjct: 139 SF 140
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 38.2 bits (88), Expect = 0.002
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Query: 69 LYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVP-- 126
++ F + + ++ ++ + N + A + + T TTIGYG V
Sbjct: 56 TWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITD 115
Query: 127 QTWMGKIVASCFSVFAISFFAL 148
+ G I+ SV A
Sbjct: 116 KCPEGIILLLIQSVLGSIVNAF 137
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 37.1 bits (85), Expect = 0.005
Identities = 13/59 (22%), Positives = 27/59 (45%)
Query: 104 TYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLLEFEVR 162
A ++ +TTIGYG+ +T G++ +++ I F + + + L +R
Sbjct: 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLR 173
Score = 36.0 bits (82), Expect = 0.014
Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 103 NTYADALWWGVITVTTIGYGDAVPQT------WMGKIVASCFSVFAISFFALPAVRIENL 156
+ +A+++ ++T+TT+G+GD V + + + + +++FA I N
Sbjct: 223 WSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNW 282
Query: 157 LEFEVR 162
L R
Sbjct: 283 LRVVSR 288
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.008
Identities = 27/185 (14%), Positives = 54/185 (29%), Gaps = 70/185 (37%)
Query: 73 FLGLI-FSSYFVYLAEKDEKNEVVGGKPNSFNTYADAL---WWGVITVTTIGYGD----- 123
+G+I + Y V +++G P +Y G++T I D
Sbjct: 240 LIGVIQLAHYVVTA-------KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 124 --AVPQT-----WMGKIVAS--CFSVFAISFFAL----------P----AVRIENLLEFE 160
+V + ++G V + ++ L P ++ + +
Sbjct: 293 FVSVRKAITVLFFIG--VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 161 VRLR--------------SLTDVHRNAI------------RAIRKIKYFVARRKFQQARK 194
+ SL + +N + +RK K A Q+R
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK---APSGLDQSRI 407
Query: 195 PYDVR 199
P+ R
Sbjct: 408 PFSER 412
Score = 32.7 bits (74), Expect = 0.18
Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 65/192 (33%)
Query: 163 LRSLTDVHRNAIRA---IRKIKYFVA---RRKFQQAR-KPYD------------------ 197
R LT H ++ + +F+A + +F + +P +
Sbjct: 6 TRPLTLSH-GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 198 ---VRDVIEQYSQGHLNMMVR--IKELQRRLDQTLGKPGSYLAGIDRSGNIKPMTIGARL 252
V ++E G + ++ + E + YL G D I + A+L
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENC----------YLEGND----IH--ALAAKL 108
Query: 253 YRVEQQGILGSGFALKVQQKQR---QKHFNRQIPAAAMLIQCLWRCFAADK-------CF 302
+ ++ + +K R ++ F+++ +A L+R A + F
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA------LFR--AVGEGNAQLVAIF 160
Query: 303 NSQATWDIYIKE 314
Q D Y +E
Sbjct: 161 GGQGNTDDYFEE 172
Score = 32.7 bits (74), Expect = 0.20
Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 32/92 (34%)
Query: 156 LLEFEVRLRSLTDVH----------RNAIRAIRK-IK-YFVARRKFQQARKPYD------ 197
L EFE D+H + ++ IK Y AR A++P+D
Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR---IMAKRPFDKKSNSA 144
Query: 198 -VRDVIEQ----YS----QGHLNMMVRIKELQ 220
R V E + QG N +EL+
Sbjct: 145 LFRAVGEGNAQLVAIFGGQG--NTDDYFEELR 174
Score = 27.3 bits (60), Expect = 9.0
Identities = 58/333 (17%), Positives = 97/333 (29%), Gaps = 129/333 (38%)
Query: 8 VVVASLIVLTIGSNGQIFAASAIRGIRFL-QI-LR------------------------- 40
+V A I + + F S + I L I +R
Sbjct: 277 LVTAVAI--AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 41 ---MLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGG 97
ML + T + V L + + L+ + KN VV G
Sbjct: 335 PSPMLSI--SNLTQEQVQDYVNKTNSHLPAGKQV-EISLVNGA----------KNLVVSG 381
Query: 98 KPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFS----VFAISFFALPAVRI 153
P S L+ +T+ + Q+ +I FS F+ F LP +
Sbjct: 382 PPQS-------LYGLNLTLRKAKAPSGLDQS---RIP---FSERKLKFSNRF--LP---V 423
Query: 154 -----ENLLEFEVRLRSLTDVHRNAIRAIRKIKYFVARRKFQQARKP-Y------DVRDV 201
+LL D+ +N + F A + + P Y D+R +
Sbjct: 424 ASPFHSHLLV-PASDLINKDLVKNNVS-------FNA----KDIQIPVYDTFDGSDLRVL 471
Query: 202 IEQYSQGHLNMMVRIK---ELQRRLDQT----LGKPGSYLAGIDRSGNIKPMTIGARLYR 254
S+ ++ ++R+ E + T G PG SG +G +R
Sbjct: 472 SGSISERIVDCIIRLPVKWETTTQFKATHILDFG-PGGA------SG------LGVLTHR 518
Query: 255 VEQQGILGSGFALKVQQKQRQKHFNRQIPAAAM 287
+ G+G R I A +
Sbjct: 519 NKD----GTGV--------------RVIVAGTL 533
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.048
Identities = 39/297 (13%), Positives = 84/297 (28%), Gaps = 92/297 (30%)
Query: 43 HVDRQGGTWRL-LGSVVFIHRQELITTL---YI-GFLGLIFSSYFVYLAEKDEKNEVVGG 97
H+D + G + ++ + + + I S K+E + ++
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS--------KEEIDHIIMS 57
Query: 98 KPNSFNTYADALWWGVITVTTIGYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLL 157
K T L+W T + + + Q ++ +++ +
Sbjct: 58 KDAVSGTLR--LFW-----TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 158 EF-EVRLRSLTDVHRNAIRAIRKIKYFVARRKFQQARKPYDVRDVIEQYSQGHLNMMVRI 216
+ E R R D A KY V+R +
Sbjct: 111 MYIEQRDRLYNDNQVFA-------KYNVSRLQ--------------------------PY 137
Query: 217 KELQRRLDQTLGKPGSYLAGIDRSGNIKPMTIGARLYRVEQQGILGSG---FALKV-QQK 272
+L++ L + +P + + G+LGSG AL V
Sbjct: 138 LKLRQALLEL--RPAKNVL----------------ID-----GVLGSGKTWVALDVCLSY 174
Query: 273 QRQKHFNRQI--------PAAAMLIQCLWR-CFAADKCFNSQATWDIYIKEPHSSKD 320
+ Q + +I + +++ L + + D + S++ D
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS--DHSSNIKLRIHS 229
Score = 34.4 bits (78), Expect = 0.052
Identities = 50/372 (13%), Positives = 104/372 (27%), Gaps = 103/372 (27%)
Query: 12 SLIVLTIGSNGQIFAASAIR-----------GIRFLQILRMLHV---DRQGG-----TWR 52
L+VL N + + A + FL H+
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 53 LLGSVVFIHRQEL------ITTLYIGFLGLIFSS------YFVYLAEKDEKNEVVGG--- 97
LL + Q+L + + + ++ D+ ++
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-NCDKLTTIIESSLN 364
Query: 98 --KPNSFNTYADALWWGV------ITVTTIG--YGDAVPQTWMGKIVASCFSVFAI---- 143
+P + D L V I + + D + M +V +
Sbjct: 365 VLEPAEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSDVM-VVVNKLHKYSLVEKQP 421
Query: 144 --SFFALPAVRIENLLEFEVRLRSLTDVHRNAIRAIRKIKYFVARRKFQQARKPYDVRDV 201
S ++P++ LE +V+L + +HR+ + Y + + F D
Sbjct: 422 KESTISIPSI----YLELKVKLENEYALHRSIVD-----HYNI-PKTFDSDDLIPPYLD- 470
Query: 202 IEQYSQGHLNMMVRIKELQRRLDQTLGKPGSYLAGIDRSGNIKPMTIGARLYRVEQQGIL 261
QY H+ G +L I+ + ++ L
Sbjct: 471 --QYFYSHI--------------------GHHLKNIEHPERMTLFR---MVF-------L 498
Query: 262 GSGFALKVQQKQRQKHFNRQIPAAAM-LIQCL--WRCFAADKCFNSQATWDIYIKEPHSS 318
F ++QK R + + +Q L ++ + D + + +
Sbjct: 499 DFRF---LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
Query: 319 KDNSSISKMCDM 330
++N SK D+
Sbjct: 556 EENLICSKYTDL 567
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.24
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 17/42 (40%)
Query: 216 IKELQRRLDQTLGKPGSYLAGIDRSGNIKP-MTIGARLYRVE 256
+K+LQ L L S A P + I A +E
Sbjct: 22 LKKLQASL--KLYADDS--A---------PALAIKA---TME 47
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 31.9 bits (73), Expect = 0.31
Identities = 12/129 (9%), Positives = 43/129 (33%), Gaps = 6/129 (4%)
Query: 173 AIRAIRKIKYFVARRKFQQARKPYDVRDVIEQYSQGHLNMMVRIKELQRRLDQTLGKPGS 232
RA +++ ++ ++R D + ++ + H + ++ + + + +
Sbjct: 772 LKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYK-KTEKPPKGQEVSELEA-- 828
Query: 233 YLAGIDRSGNIKPMTIGARLYRVEQQGILGSGFALKVQQKQRQKHFNRQI---PAAAMLI 289
+ + + I + AL+ +++ + ++ A+L+
Sbjct: 829 IYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLL 888
Query: 290 QCLWRCFAA 298
Q R
Sbjct: 889 QKYNRILKK 897
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 30.8 bits (70), Expect = 0.82
Identities = 18/150 (12%), Positives = 45/150 (30%), Gaps = 6/150 (4%)
Query: 156 LLEFEVRLRSLTDVHRNAIRAIRKIKYFVARRKFQQARKPYDVRDVIEQYSQGHLNMMVR 215
L + E S RA +++ ++ ++R D IE
Sbjct: 747 LAQLEEERASEQTKSDYLKRANELVQWINDKQASLESRD---FGDSIESVQSFMNAHKEY 803
Query: 216 IKELQRRLDQTLGKPGSYLAGIDRSGNIKPMTIGARLYRVEQQGILGSGFALKVQQKQRQ 275
K + Q + + + + + + I + AL+ +++
Sbjct: 804 KKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHA 863
Query: 276 KHFNRQI---PAAAMLIQCLWRCFAADKCF 302
+ ++ A+L+Q R + +
Sbjct: 864 EALRIELKRQKKIAVLLQKYNRILKKLENW 893
>3tw5_A Transglutaminase elicitor; cysteine protease, convergent evolution,
innate immunity, PA associated molecular pattern (PAMP);
HET: CXS; 2.95A {Phytophthora sojae}
Length = 367
Score = 28.6 bits (63), Expect = 3.0
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 79 SSYFVYLAEKDEKNEVVGGK--PNSFNTYADALWWGVI-----TVTTIG--YGD 123
Y+ YL E D+ E++GG+ S + + D LW TVT++G Y D
Sbjct: 301 GQYYYYLLELDDAGEIIGGEWVYGSDDDHPDFLWLPKAKPAANTVTSVGLSYAD 354
>2aya_A DNA polymerase III subunit TAU; KH-fold, C-terminus of polymerase
III TAU subunit, transferase; HET: DNA; NMR {Escherichia
coli}
Length = 128
Score = 27.5 bits (61), Expect = 3.4
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 206 SQGHLNMMVRIKELQRRLDQTLGKPGSYLAGIDRSGNIK-PMTIGARLYRVEQQ 258
SQ HLN ++L L G D + ++ P+ +Y +
Sbjct: 62 SQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLA 115
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 28.6 bits (63), Expect = 3.5
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 199 RDVIEQYSQGHLNMMVRIKELQRRLDQTLGKPGSYLAG 236
Y + +++ I ++++ L PG + AG
Sbjct: 436 SKAFPLYGHNYDSVLDAIDKMEKNL------PGLFYAG 467
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis,
accase, ligase, transferase; 2.2A {Mycobacterium
tuberculosis} PDB: 2a7s_A
Length = 548
Score = 28.3 bits (64), Expect = 3.6
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 192 ARKPYDVRDVIEQ 204
+PYD+ +VI +
Sbjct: 308 PNQPYDMHEVITR 320
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit;
carboxyltransferase, beta-BETA-alpha superhelix, ligase;
HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B*
3u9t_B
Length = 555
Score = 28.3 bits (64), Expect = 4.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 193 RKPYDVRDVIE 203
++PYDVR+VI
Sbjct: 318 KQPYDVREVIA 328
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC,
PCC, CT, carboxyltransfe polyketide, fatty acid, PKS,
FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A*
3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Length = 530
Score = 27.9 bits (63), Expect = 4.7
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 192 ARKPYDVRDVIEQ 204
A +PYD+ VIE
Sbjct: 292 ANQPYDMHSVIEH 304
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain
duplication, multienzyme complex, transcarboxylase; HET:
MCA; 1.90A {Propionibacterium freudenreichii} SCOP:
c.14.1.4 c.14.1.4 PDB: 1on9_A*
Length = 523
Score = 27.9 bits (63), Expect = 5.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 192 ARKPYDVRDVIEQ 204
+K YDVRDVI +
Sbjct: 286 GKKGYDVRDVIAK 298
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Roseobacter denitrificans}
Length = 531
Score = 27.9 bits (63), Expect = 5.9
Identities = 4/13 (30%), Positives = 9/13 (69%)
Query: 192 ARKPYDVRDVIEQ 204
PYD++++I +
Sbjct: 298 PNTPYDMKELIHK 310
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport,
biotin, glutamate fermentation, lyase; HET: COO; 1.75A
{Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Length = 588
Score = 27.7 bits (62), Expect = 6.0
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 193 RKPYDVRDVIE 203
++PYD+ +VI
Sbjct: 321 KRPYDIYEVIA 331
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A
{Sulfolobus tokodaii}
Length = 522
Score = 27.5 bits (62), Expect = 6.2
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 192 ARKPYDVRDVIEQ 204
A KPY++R++I +
Sbjct: 285 AAKPYNMREIIYK 297
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 27.8 bits (62), Expect = 6.5
Identities = 32/156 (20%), Positives = 65/156 (41%), Gaps = 20/156 (12%)
Query: 156 LLEFEVRLRSLTDVHRNAIRAIRKIKYFVARRKFQQARKPYDVRDVIEQYSQGHLNMMVR 215
LE ++R L IR + I+ ++ R+K+ + R+ I++Y +GH
Sbjct: 758 YLE-KIRADKLRAA---CIRIQKTIRGWLMRKKYMRMRR---AAITIQRYVRGHQARCYA 810
Query: 216 IKELQRRLDQTLGK--PG-----SYLAGIDRSGNIKPMTIGARLYRVEQQGILGSGFALK 268
+ R + K Y D + ++ + G L R + Q +L ++
Sbjct: 811 TFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRG-YLVRNKYQMMLREHKSII 869
Query: 269 VQQKQR----QKHFNRQIPAAAMLIQCLWRCFAADK 300
+Q+ R + H++R + A + +QC +R A +
Sbjct: 870 IQKHVRGWLARVHYHRTL-KAIVYLQCCYRRMMAKR 904
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint
center for structural genomics, JCSG, protein structu
initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima}
SCOP: c.14.1.4 c.14.1.4
Length = 527
Score = 27.5 bits (62), Expect = 7.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 192 ARKPYDVRDVIEQ 204
K YDVRDVI++
Sbjct: 290 PNKGYDVRDVIKR 302
>1eys_L Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: f.26.1.1
Length = 280
Score = 27.4 bits (60), Expect = 7.3
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 66 ITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAV 125
+ Y+GF G++ + + +G + + LW I + YG +
Sbjct: 26 VGPFYVGFFGVVGFCFTLLGVLLIVWGATIGPTGPTSDLQTYNLWRISIAPPDLSYGLRM 85
Query: 126 P---QTWMGKIVASCFSVFAISF 145
+ + +I+ C + IS+
Sbjct: 86 APLTEGGLWQIITICAAGAFISW 108
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump,
carboxyltransferase, lyase; 2.20A {Acidaminococcus
fermentans} SCOP: c.14.1.4 c.14.1.4
Length = 587
Score = 27.4 bits (61), Expect = 7.7
Identities = 4/11 (36%), Positives = 8/11 (72%)
Query: 193 RKPYDVRDVIE 203
++ YD+ +VI
Sbjct: 318 KRAYDIYNVIA 328
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 8.2
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 17/68 (25%)
Query: 158 EFEVRLRSLTDVHRNAIRAIRKIKYFVARRKFQQARKPYDVRDVIEQYSQGHLNMMVRIK 217
E RL+ L + + R ++A+K D+ E + + + K
Sbjct: 93 EQRKRLQELDAASKVMEQEWR-----------EKAKK-----DLEEWNQR-QSEQVEKNK 135
Query: 218 ELQRRLDQ 225
R D+
Sbjct: 136 INNRIADK 143
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.139 0.417
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,180,021
Number of extensions: 323142
Number of successful extensions: 821
Number of sequences better than 10.0: 1
Number of HSP's gapped: 800
Number of HSP's successfully gapped: 60
Length of query: 330
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 236
Effective length of database: 4,077,219
Effective search space: 962223684
Effective search space used: 962223684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.7 bits)