RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1611
(330 letters)
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 70.3 bits (172), Expect = 6e-16
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 60 IHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTI 119
+H + + + L+ SY LAE+ TY ALWW V T TT+
Sbjct: 3 LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGA-------QLITYPRALWWSVETATTV 55
Query: 120 GYGDAVPQTWMGKIVASCFSVFAISFFALPAVRIENLL 157
GYGD P T G+ VA V I+ F L +
Sbjct: 56 GYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 93
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 61.6 bits (150), Expect = 4e-13
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 66 ITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAV 125
T + + L +I + + E ++ +L+W +T+ T+GYGD
Sbjct: 2 ATRILLLVLAVIIYGTAGFHFIEGE-------------SWTVSLYWTFVTIATVGYGDYS 48
Query: 126 PQTWMGKIVASCFSVFAISFFALPAVRIENLL 157
P T +G V I FA+ R+ L
Sbjct: 49 PSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 57
Score = 55.2 bits (133), Expect = 4e-11
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 60 IHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTI 119
+H + + + L+ SY LAE+ TY ALWW T TT+
Sbjct: 3 LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGA-------QLITYPRALWWACETATTV 55
Query: 120 GY 121
GY
Sbjct: 56 GY 57
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 53.4 bits (128), Expect = 9e-10
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 65 LITTLYIGFLGLIFSSYFVY-----LAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTI 119
L+T + F+ LI Y V LA + + +P SF DA ++ V T+ TI
Sbjct: 19 LLTVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSF---TDAFFFSVQTMATI 75
Query: 120 GYGDAVPQTWMGKIVASCFSVFAISFFALP 149
GYG +P + + + ++ + A+
Sbjct: 76 GYGKLIPIGPLANTLVTLEALCGMLGLAVA 105
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 116
Score = 52.3 bits (125), Expect = 2e-09
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Query: 60 IHRQELITTLYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTI 119
+ +L F+ +Y S + A ++ V T+ T+
Sbjct: 23 VSWPVFFASLAALFVVNNTLFALLYQ------LGDAPIANQSPPGFVGAFFFSVETLATV 76
Query: 120 GYGDAVPQTWMGKIVASCFSVFAISFFALPA 150
GYGD PQT +A+ +S AL
Sbjct: 77 GYGDMHPQTVYAHAIATLEIFVGMSGIALST 107
>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase
(transcarboxylase 12S) {Propionibacterium freudenreichii
[TaxId: 1744]}
Length = 264
Score = 27.4 bits (60), Expect = 2.6
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 193 RKPYDVRDVIE 203
+K YDVRDVI
Sbjct: 28 KKGYDVRDVIA 38
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 264
Score = 27.4 bits (60), Expect = 2.6
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 193 RKPYDVRDVIEQ 204
K YDVRDVI++
Sbjct: 28 NKGYDVRDVIKR 39
>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit
{Acidaminococcus fermentans [TaxId: 905]}
Length = 299
Score = 27.1 bits (59), Expect = 2.7
Identities = 4/11 (36%), Positives = 8/11 (72%)
Query: 193 RKPYDVRDVIE 203
++ YD+ +VI
Sbjct: 30 KRAYDIYNVIA 40
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein
L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Length = 37
Score = 24.4 bits (53), Expect = 2.8
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 5/21 (23%)
Query: 67 TTLYIGFL-----GLIFSSYF 82
T+LY+G L L+FSSYF
Sbjct: 15 TSLYLGLLLILVLALLFSSYF 35
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 27.3 bits (60), Expect = 2.8
Identities = 17/134 (12%), Positives = 36/134 (26%), Gaps = 10/134 (7%)
Query: 196 YDVRDVIEQYSQGHLNMMVRIKELQRRLDQTLGKPGSYLAGIDRSGNIKPMTIGARLYR- 254
Y+ I Q + L + + R D R +
Sbjct: 122 YNSIGTINQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRDFSL 181
Query: 255 -VEQQGILGSGFALKVQQKQRQKHFNRQIPAAAMLIQCLWRCFAADKCFNSQATWDIYIK 313
+E G + + +K +++ + C+ + F KCF
Sbjct: 182 DLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFV--------FD 233
Query: 314 EPHSSKDNSSISKM 327
P + + + K+
Sbjct: 234 RPVHRRKLAQLEKL 247
>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B
subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 271
Score = 27.0 bits (59), Expect = 3.3
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 193 RKPYDVRDVIE 203
+PYD+ +VI
Sbjct: 32 NQPYDMHEVIT 42
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 263
Score = 26.6 bits (58), Expect = 3.5
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 193 RKPYDVRDVIE 203
+PYD+ VIE
Sbjct: 26 NQPYDMHSVIE 36
>d1vqox1 d.29.1.1 (X:7-88) Ribosomal protein L31e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 82
Score = 25.4 bits (56), Expect = 3.8
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 158 EFEVRLRSLTDV--HRNAIRAIRKIKYFVAR 186
+ LR H+ A +A+ I+ +A+
Sbjct: 3 VVTIPLRDARAEPNHKRADKAMILIREHLAK 33
>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA
{Haemophilus influenzae [TaxId: 727]}
Length = 152
Score = 26.0 bits (56), Expect = 4.9
Identities = 11/93 (11%), Positives = 25/93 (26%)
Query: 69 LYIGFLGLIFSSYFVYLAEKDEKNEVVGGKPNSFNTYADALWWGVITVTTIGYGDAVPQT 128
+ +G G + + YL ++ + + A VI I +
Sbjct: 13 VIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIER 72
Query: 129 WMGKIVASCFSVFAISFFALPAVRIENLLEFEV 161
+ + S P ++ + V
Sbjct: 73 LKPYLTENMLLADLTSVKREPLAKMLEVHTGAV 105
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 25.9 bits (56), Expect = 8.4
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 169 VHRNAIRAIRKIKYFVARRKFQQARK 194
+ IR + I+ ++ R+K+ + R+
Sbjct: 705 LRAACIRIQKTIRGWLMRKKYMRMRR 730
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.139 0.417
Gapped
Lambda K H
0.267 0.0605 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,252,529
Number of extensions: 59851
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 21
Length of query: 330
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 244
Effective length of database: 1,226,816
Effective search space: 299343104
Effective search space used: 299343104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.5 bits)