BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16110
(719 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 146/317 (46%), Gaps = 23/317 (7%)
Query: 253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNG 312
RF ++P P R+L + NRI TL D F S LE + L N ++ +E GAFN
Sbjct: 22 RFVAVPE---GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN 78
Query: 313 LAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFS 372
L + L L NRL + G F GL+ + L++ N++ I +
Sbjct: 79 LFNLRTLGLRSNRLKLI-----PLGVFTGLSNLTKLDISENKIV-----------ILLDY 122
Query: 373 FFQDFQKLKSLDLNGNFLINLESTGLE--DTLDNLNVRDNQITTLSSSALNY-KLLTKLD 429
FQD LKSL++ N L+ + ++L+ L + +T++ + AL++ L L
Sbjct: 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182
Query: 430 LSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQ 489
L H N+ + +F + L L +S +L ++ L L L + L ++P
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPY 241
Query: 490 YQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRL 549
L+ L++L L++N ++ I M LL L + L + + + GL ++ L
Sbjct: 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301
Query: 550 DLSFNKLTTFKGDYFNT 566
++S N+LTT + F++
Sbjct: 302 NVSGNQLTTLEESVFHS 318
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 126/284 (44%), Gaps = 22/284 (7%)
Query: 428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
LDL N +K L F + P L L L+ N +S++ G F+ L L L L + LK I
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLI 95
Query: 488 PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK 547
P F L NL L ++ N + + + MF++L NL L++ +N++V + + GL S++
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155
Query: 548 RLDLSFNKLTTFKGD--------------YFNTKSKPNTSSXXXXXXXXXXXTYLFPSSF 593
+L L LT+ + + N + + S ++ +P
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH-WPYLD 214
Query: 594 TIHSK------LKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRL 647
T+ L +L + P + L YL+ ++LS N + TI+ L RL
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274
Query: 648 RKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT 691
++ + + F + L+++N+S N+L L E +F++
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 139/338 (41%), Gaps = 40/338 (11%)
Query: 193 ELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHN 252
E RL D G + + EF +L L+L++N + A+E G NL L + N
Sbjct: 33 ETRLLD--LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90
Query: 253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNG 312
R IP G L L ++ N+I L F L+ + + N L I AF+G
Sbjct: 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 313 LAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFS 372
L + L L K N + A + L + +L L + +N + +F+ +
Sbjct: 151 LNSLEQLT-----LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY----- 200
Query: 373 FFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSH 432
+LK L+++ + T++ + L LT L ++H
Sbjct: 201 ------RLKVLEIS---------------------HWPYLDTMTPNCLYGLNLTSLSITH 233
Query: 433 NNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQF 492
NL + A ++ L LNLS N +S++ L +L+ + L L + Y F
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292
Query: 493 DELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
L L+ L ++ N LT + E +F ++ NL L L +N
Sbjct: 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 26/192 (13%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLAD-NLFGDSLNPIFSTSEFHGLVNLRILD 224
++ L+ N L +S + FS ++L++L L NL + P + S HGL+ LR+
Sbjct: 130 LKSLEVGDNDLVYISHRAFS-GLNSLEQLTLEKCNL---TSIPTEALSHLHGLIVLRLRH 185
Query: 225 LSDNQI-----------KAIEEGILKGCD----------NLLELRMDHNRFTSIPSVSLN 263
L+ N I K +E D NL L + H T++P +++
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245
Query: 264 GPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGY 323
LR L+++YN I T++ L+ I L G +L +E AF GL + +LN+
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305
Query: 324 NRLNKLNSDTFQ 335
N+L L F
Sbjct: 306 NQLTTLEESVFH 317
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 95/234 (40%), Gaps = 16/234 (6%)
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
+LDL +K++ Q +F +L+ L L N ++ + F NL NL L L +N +
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKG----DYFNTKSKPNTSSXXXXXXXXXXXTYLFP 590
+ +G GL ++ +LD+S NK+ D +N KS Y+
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS---------LEVGDNDLVYISH 145
Query: 591 SSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKX 650
+F+ + L+ L L P E + L L + L + + I DY + L RL+
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205
Query: 651 XXXXX-XIDAISETCFF--NSSQLQIINLSFNRLEKLPERLFNTFLYTNYDMAP 701
+D ++ C + N + L I + + + L R + N P
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 6/145 (4%)
Query: 542 GLPSMKRL-DLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLK 600
G+P+ RL DL N++ T D F S P+ + + P +F L+
Sbjct: 29 GIPTETRLLDLGKNRIKTLNQDEF--ASFPHLEELELNENIV---SAVEPGAFNNLFNLR 83
Query: 601 TLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAI 660
TL L N+ P + GLS L ++D+S N++ + DY + L L+ + I
Sbjct: 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI 143
Query: 661 SETCFFNSSQLQIINLSFNRLEKLP 685
S F + L+ + L L +P
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLTSIP 168
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 169/373 (45%), Gaps = 51/373 (13%)
Query: 204 SLNPIFSTSE--FHGLVNLRILDLSDNQIK-AIEEGILKGCDNLLELRMDHNRFTSIPSV 260
SLN I +E F L +L+ L + I +G +L+ L++D+N+F + +
Sbjct: 38 SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG 97
Query: 261 SLNGPRALRILSMAYNRI--GTLKADSFLSQRWLERIILRGNRLTTIEGGAFN-GLAKIH 317
+ NG L +L++ + L + F LE ++LR N + I+ +F + + H
Sbjct: 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157
Query: 318 ILNLGYNRLNKLNSD---TFQGGAFN-------GLAKIHILNLGYNRLNKLNSDTFQGTH 367
+L+L +N++ + + FQG F L ++ LG+ + + F+ T
Sbjct: 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC----GNPFKNTS 213
Query: 368 ITIFS-------------FFQDFQ--KLKSLDLNGNFLI-------------NLESTGLE 399
IT FF K++SL L+ ++ + N GLE
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273
Query: 400 DT-LDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
+ + ++ ++I L S ++ L +L L+ N + +++ AF + LL LNLS+N
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333
Query: 458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK 517
L S+ F+ L KLEVLDL+ ++++ F L NLK L L N L +P+ +F
Sbjct: 334 -FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392
Query: 518 NLLNLTYLDLSNN 530
L +L + L N
Sbjct: 393 RLTSLQKIWLHTN 405
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 108/441 (24%), Positives = 172/441 (39%), Gaps = 92/441 (20%)
Query: 265 PRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLT---TIEGGAFNGLAKIHILNL 321
P + + ++ N I L SF R + L+ + T I F GL+ + IL L
Sbjct: 29 PAHVNYVDLSLNSIAELNETSF--SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86
Query: 322 GYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLK 381
YN+ +L + GAFNGLA + +L L L+
Sbjct: 87 DYNQFLQLET-----GAFNGLANLEVLTLTQCNLD------------------------- 116
Query: 382 SLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSA--LNYKLLTKLDLSHNNLKELE 439
L+GNF L S L+ L +RDN I + ++ LN + LDL+ N +K +
Sbjct: 117 GAVLSGNFFKPLTS------LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170
Query: 440 PTAFTNVP----TLLHLNLSRNAHLSSLPVGG---FDPLKKLEV--LDLAATGLK-SIPQ 489
N TLL L+ ++ +G +P K + LDL+ G K S+ +
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230
Query: 490 YQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRL 549
FD + T+I ++ N N+ GS +G + K
Sbjct: 231 RFFDAIAG-----------TKIQSLILSNSYNM---------------GSSFGHTNFKDP 264
Query: 550 DLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKF 609
D +F TFKG S L S F+ + L+ L LA N+
Sbjct: 265 D-NF----TFKG--------LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311
Query: 610 NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSS 669
N GL++L +++LS N L +ID + L +L I A+ + F
Sbjct: 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371
Query: 670 QLQIINLSFNRLEKLPERLFN 690
L+ + L N+L+ +P+ +F+
Sbjct: 372 NLKELALDTNQLKSVPDGIFD 392
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 123/262 (46%), Gaps = 39/262 (14%)
Query: 269 RILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNK 328
R+L++ N+I +K +SF R LE + L N + TIE GAFNGLA ++ L L NRL
Sbjct: 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT- 125
Query: 329 LNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN 388
T GAF L+K+ L L N + + S F L+ LDL
Sbjct: 126 ----TIPNGAFVYLSKLKELWLRNNPIESIPSYAFN-----------RIPSLRRLDLGEL 170
Query: 389 FLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPT 448
++ S G + L NL L+L+ NL+E+ T +
Sbjct: 171 KRLSYISEGAFEGLSNLRY--------------------LNLAMCNLREIP--NLTPLIK 208
Query: 449 LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHL 508
L L+LS N HLS++ G F L L+ L + + ++ I + FD L +L + LAHN+L
Sbjct: 209 LDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Query: 509 TEIPEMMFKNLLNLTYLDLSNN 530
T +P +F L +L + L +N
Sbjct: 268 TLLPHDLFTPLHHLERIHLHHN 289
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 106/264 (40%), Gaps = 34/264 (12%)
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
+K+ NL+E+ TN L NL N + + V F L+ LE+L L+ ++
Sbjct: 46 SKVICVRKNLREVPDGISTNTRLL---NLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIR 101
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS 545
+I F+ L NL L L N LT IP F L L L L NN I ++ + +PS
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161
Query: 546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLA 605
++RLDL K +Y+ +F S L+ L LA
Sbjct: 162 LRRLDLGELK----------------------------RLSYISEGAFEGLSNLRYLNLA 193
Query: 606 FNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCF 665
P + L L E+DLS N L I + L L+K I I F
Sbjct: 194 MCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251
Query: 666 FNSSQLQIINLSFNRLEKLPERLF 689
N L INL+ N L LP LF
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLF 275
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 117/261 (44%), Gaps = 39/261 (14%)
Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
N R+L+L +NQI+ I+ K +L L++ N +I + NG L L + NR+
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124
Query: 279 GTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGA 338
T+ +F+ L+ + LR N + +I AFN + + L+LG L +L GA
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG--ELKRL--SYISEGA 180
Query: 339 FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGL 398
F GL+ + LNL L ++ + T KL LDL+GN L +
Sbjct: 181 FEGLSNLRYLNLAMCNLREIPNLT-------------PLIKLDELDLSGNHLSAIRPGSF 227
Query: 399 EDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNA 458
+ + L KL + + ++ +E AF N+ +L+ +NL+ N
Sbjct: 228 QGLMH---------------------LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN- 265
Query: 459 HLSSLPVGGFDPLKKLEVLDL 479
+L+ LP F PL LE + L
Sbjct: 266 NLTLLPHDLFTPLHHLERIHL 286
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 112/260 (43%), Gaps = 43/260 (16%)
Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
L N++ I+ +F L + IL L N + T + GAFNGLA ++ L L NRL
Sbjct: 71 LHENQIQIIKVNSFKHLRHLEILQLSRNHIR-----TIEIGAFNGLANLNTLELFDNRLT 125
Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
+ + F KLK L L R+N I ++
Sbjct: 126 TIPNGA-----------FVYLSKLKELWL----------------------RNNPIESIP 152
Query: 417 SSALN-YKLLTKLDLSH-NNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKL 474
S A N L +LDL L + AF + L +LNL+ +L +P PL KL
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIP--NLTPLIKL 209
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
+ LDL+ L +I F L++L+ L + + + I F NL +L ++L++NN+
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269
Query: 535 LRVGSLYGLPSMKRLDLSFN 554
L L ++R+ L N
Sbjct: 270 LPHDLFTPLHHLERIHLHHN 289
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 13/194 (6%)
Query: 162 SDIP--IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
S+IP ++LD N L L K F HR L +LRL D+ F L N
Sbjct: 33 SNIPADTKKLDLQSNKLSSLPSKAF--HR--LTKLRLL--YLNDNKLQTLPAGIFKELKN 86
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
L L ++DN+++A+ G+ NL ELR+D N+ S+P + L LS+ YN +
Sbjct: 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
+L F L+ + L N+L + GAF+ L ++ L L N+L ++ GAF
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE-----GAF 201
Query: 340 NGLAKIHILNLGYN 353
+ L K+ +L L N
Sbjct: 202 DSLEKLKMLQLQEN 215
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 84/177 (47%), Gaps = 4/177 (2%)
Query: 381 KSLDLNGNFLINLESTGLE--DTLDNLNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKE 437
K LDL N L +L S L L + DN++ TL + K L L ++ N L+
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 438 LEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLN 497
L F + L L L RN L SLP FD L KL L L L+S+P+ FD+L +
Sbjct: 100 LPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 498 LKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
LK L L +N L +PE F L L L L NN + + G+ L +K L L N
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 90/205 (43%), Gaps = 30/205 (14%)
Query: 427 KLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKS 486
KLDL N L L AF + L L L+ N L +LP G F LK LE L + L++
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 487 IPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM 546
+P FD+L+NL L L N L +P +F +L LTYL L N + +L G L S+
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 547 KRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAF 606
K L L N+L K P +F ++LKTLKL
Sbjct: 160 KELRLYNNQL----------KRVPE-------------------GAFDKLTELKTLKLDN 190
Query: 607 NKFNYFPKELILGLSYLQEIDLSNN 631
N+ P+ L L+ + L N
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 7/191 (3%)
Query: 382 SLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDL---SHNNLKEL 438
S+D + L + S DT L+++ N++++L S A + LTKL L + N L+ L
Sbjct: 20 SVDCSSKKLTAIPSNIPADT-KKLDLQSNKLSSLPSKA--FHRLTKLRLLYLNDNKLQTL 76
Query: 439 EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNL 498
F + L L ++ N L +LP+G FD L L L L LKS+P FD L L
Sbjct: 77 PAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135
Query: 499 KYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558
YL L +N L +P+ +F L +L L L NN + + G+ L +K L L N+L
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195
Query: 559 FKGDYFNTKSK 569
F++ K
Sbjct: 196 VPEGAFDSLEK 206
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 29/203 (14%)
Query: 477 LDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR 536
LDL + L S+P F L L+ L L N L +P +FK L NL L +++N + L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 537 VGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIH 596
+G L ++ L L N+L + L P F
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKS-----------------------------LPPRVFDSL 132
Query: 597 SKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXX 656
+KL L L +N+ PK + L+ L+E+ L NNQLK + + + L L+
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 657 IDAISETCFFNSSQLQIINLSFN 679
+ + E F + +L+++ L N
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQEN 215
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 94/228 (41%), Gaps = 43/228 (18%)
Query: 253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNG 312
+ T+IPS N P + L + N++ +L + +F L + L N+L T+ G F
Sbjct: 27 KLTAIPS---NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE 83
Query: 313 LAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQG-THITIF 371
L + L + N+L L G F+ L + L L N+L L F T +T
Sbjct: 84 LKNLETLWVTDNKLQALPI-----GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138
Query: 372 SFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLS 431
S + +L+SL G+ D L +L +L L
Sbjct: 139 SL--GYNELQSL-----------PKGVFDKLTSLK--------------------ELRLY 165
Query: 432 HNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
+N LK + AF + L L L N L +P G FD L+KL++L L
Sbjct: 166 NNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQL 212
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%)
Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXX 654
I + K L L NK + P + L+ L+ + L++N+L+T+ + L L
Sbjct: 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94
Query: 655 XXIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNY 697
+ A+ F L + L N+L+ LP R+F++ Y
Sbjct: 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 36/170 (21%)
Query: 529 NNNIVNLRVGSLYGLPS-----MKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXX 583
N N V+ L +PS K+LDL NKL++
Sbjct: 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSL------------------------ 52
Query: 584 XXTYLFPS-SFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYG 642
PS +F +KL+ L L NK P + L L+ + +++N+L+ + +
Sbjct: 53 ------PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106
Query: 643 YLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTF 692
L L + + ++ F + ++L ++L +N L+ LP+ +F+
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
Query: 428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
L L N L ++ +A + L +L L+ N L SLP G FD L L+ L L L+S+
Sbjct: 68 LALGGNKLHDI--SALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 488 PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK 547
P FD+L NL YL L HN L +P+ +F L NLT LDL NN + +L G L +K
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLK 184
Query: 548 RLDLSFNKLTTFKGDYFN 565
+L L+ N+L + F+
Sbjct: 185 QLSLNDNQLKSVPDGVFD 202
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 4/180 (2%)
Query: 353 NRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQI 412
N LN ++ + I Q ++ L L GN L ++ + L L + NQ+
Sbjct: 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQL 97
Query: 413 TTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP 470
+L + + KL L +L L N L+ L F + L +L L N L SLP G FD
Sbjct: 98 QSLPNGVFD-KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN-QLQSLPKGVFDK 155
Query: 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
L L LDL L+S+P+ FD+L LK L L N L +P+ +F L +LT++ L NN
Sbjct: 156 LTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
LT L L+ N L+ L F + L L L N L SLP G FD L L L L L
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLYLYHNQL 145
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
+S+P+ FD+L NL L L +N L +PE +F L L L L++N + ++ G L
Sbjct: 146 QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLT 205
Query: 545 SMKRL 549
S+ +
Sbjct: 206 SLTHI 210
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 2/144 (1%)
Query: 206 NPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP 265
N + S L NL L L+ NQ++++ G+ NL EL + N+ S+P +
Sbjct: 73 NKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132
Query: 266 RALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR 325
L L + +N++ +L F L R+ L N+L ++ G F+ L ++ L+L N+
Sbjct: 133 TNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQ 192
Query: 326 LNKLNSDTFQGGAFNGLAKIHILN 349
L + F L I +LN
Sbjct: 193 LKSVPDGVFD--RLTSLTHIWLLN 214
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 33/182 (18%)
Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL 543
+KS+ Q+ L N++YL L N L +I + K L NLTYL L+ N + +L G L
Sbjct: 53 IKSVQGIQY--LPNVRYLALGGNKLHDISAL--KELTNLTYLILTGNQLQSLPNGVFDKL 108
Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLK 603
++K L L N+L + F+ + TYL+
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTN---------------LTYLY-------------- 139
Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISET 663
L N+ PK + L+ L +DL NNQL+++ + + L +L++ + ++ +
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDG 199
Query: 664 CF 665
F
Sbjct: 200 VF 201
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 169 LDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDN 228
L +GN L+ L + +F + L+EL L +N F L NL L L N
Sbjct: 90 LILTGNQLQSLPNGVFDKLTN-LKELVLVENQLQS-----LPDGVFDKLTNLTYLYLYHN 143
Query: 229 QIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSF-- 286
Q++++ +G+ NL L +D+N+ S+P + L+ LS+ N++ ++ F
Sbjct: 144 QLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDR 203
Query: 287 ---LSQRWL 292
L+ WL
Sbjct: 204 LTSLTHIWL 212
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 80/201 (39%), Gaps = 43/201 (21%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
T EL D + ++ + I S L N+R L L N++ I LK NL L +
Sbjct: 36 TQNELNSIDQIIANN-SDIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLIL 92
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
N+ S+P NG ++++ LK ++L N+L ++ G
Sbjct: 93 TGNQLQSLP----NG---------VFDKLTNLK-----------ELVLVENQLQSLPDGV 128
Query: 310 FNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHIT 369
F+ L + L L +N+L L G F+ L + L+L N+L L
Sbjct: 129 FDKLTNLTYLYLYHNQLQSL-----PKGVFDKLTNLTRLDLDNNQLQSLPE--------- 174
Query: 370 IFSFFQDFQKLKSLDLNGNFL 390
F +LK L LN N L
Sbjct: 175 --GVFDKLTQLKQLSLNDNQL 193
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%)
Query: 597 SKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXX 656
+ L L L N+ P + L+ L+E+ L NQL+++ D + L L
Sbjct: 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQ 144
Query: 657 IDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
+ ++ + F + L ++L N+L+ LPE +F+
Sbjct: 145 LQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFD 178
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 107/384 (27%), Positives = 167/384 (43%), Gaps = 71/384 (18%)
Query: 213 EFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILS 272
EF G +LR LDLS N +K G + L L +++ + P L
Sbjct: 166 EFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQL---------NPHLTEKLC 216
Query: 273 MAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHI--LNLGYNRLNKLN 330
LS ++ + L N+L F+GL ++ L+L YN L+ +
Sbjct: 217 WE------------LSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVG 264
Query: 331 SDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQG-THITIFSFFQDFQKLKSLDLNGNF 389
+ G+F+ L + L+L YN + +L+ +F G +++ S + F K +S+ L +
Sbjct: 265 N-----GSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTK-QSVSLASHP 318
Query: 390 LINLESTGLEDTLDNLNVRDNQITTLSSS------ALNYKLLTKLDLSHNNLKELEPTAF 443
I+ S L+ LN+ DN I + S+ +L Y L+K S L +
Sbjct: 319 NIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSL 378
Query: 444 TNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQ----YQFDELLNL- 498
+ P LL LNL++N H+S + G F L +L +LDL GL I Q ++ L N+
Sbjct: 379 AHSP-LLTLNLTKN-HISKIANGTFSWLGQLRILDL---GLNEIEQKLSGQEWRGLRNIF 433
Query: 499 -------KYLCLAHNHLTEIPEMM------------------FKNLLNLTYLDLSNNNIV 533
KYL L+ + +P + F+ L NLT LDLSNNNI
Sbjct: 434 EIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIA 493
Query: 534 NLRVGSLYGLPSMKRLDLSFNKLT 557
N+ L GL +++ LD N L
Sbjct: 494 NINEDLLEGLENLEILDFQHNNLA 517
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 121/478 (25%), Positives = 205/478 (42%), Gaps = 36/478 (7%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
L ILD N I +E + + L L + HN + I + L L + N I
Sbjct: 51 LAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIH 110
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
+K++ F +Q+ L ++ L N L++ + G L + L L N++ L S+ + F
Sbjct: 111 KIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELE---F 167
Query: 340 NGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLE 399
G + + L+L N L + + FQ TI F L + LN + L
Sbjct: 168 LGNSSLRKLDLSSNPLKEFSPGCFQ----TIGKLFALL--LNNAQLNPHLTEKLCWELSN 221
Query: 400 DTLDNLNVRDNQITTLSS---SALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSR 456
++ NL++ +NQ+ S S L + LT+LDLS+NNL ++ +F+ +P+L +L+L
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 457 NAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMF 516
N ++ L F L L L L K + + LA + I + F
Sbjct: 282 N-NIQRLSPRSFYGLSNLRYLSLKRAFTK-------------QSVSLASH--PNIDDFSF 325
Query: 517 KNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS--FNKLTTFKGDYFNTKSKPNTSS 574
+ L L YL++ +NNI + + + GL S+K L LS F L T + F + + S
Sbjct: 326 QWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAH---SP 382
Query: 575 XXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNY-FPKELILGLSYLQEIDLSNNQL 633
+ + +F+ +L+ L L N+ + GL + EI LS N+
Sbjct: 383 LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY 442
Query: 634 KTIDDYDYGYLPRLRKXXXXXXXIDA--ISETCFFNSSQLQIINLSFNRLEKLPERLF 689
+ + +P L++ + IS + F L I++LS N + + E L
Sbjct: 443 LQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLL 500
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 119/465 (25%), Positives = 192/465 (41%), Gaps = 94/465 (20%)
Query: 166 IRRLDFSGNALRRLS-------DKLFS---------PH----------RDTLQELRLADN 199
+R+LD S N L+ S KLF+ PH ++Q L LA+N
Sbjct: 173 LRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANN 232
Query: 200 LFGDSLNPIFSTSE--FHGL--VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFT 255
+ +TSE F GL NL LDLS N + + G +L L +++N
Sbjct: 233 -------QLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQ 285
Query: 256 SIPSVSLNGPRALRILSM--AYNRIGTLKAD-------SFLSQRWLERIILRGNRLTTIE 306
+ S G LR LS+ A+ + A SF ++LE + + N + + +
Sbjct: 286 RLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTK 345
Query: 307 GGAFNGLAKIHILNLG--YNRLNKLNSDTF---------------------QGGAFNGLA 343
F GL + L+L + L L ++TF G F+ L
Sbjct: 346 SNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLG 405
Query: 344 KIHILNLGYNRL-NKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTL 402
++ IL+LG N + KL+ ++G IF + + K L + S L +L
Sbjct: 406 QLRILDLGLNEIEQKLSGQEWRGLR-NIFEIYLSYNKYLQLSTS--------SFALVPSL 456
Query: 403 DNLNVRDNQITTLSSSALNYKLL---TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAH 459
L +R + + S ++ L T LDLS+NN+ + + L L+ N +
Sbjct: 457 QRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHN-N 515
Query: 460 LSSL--------PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEI 511
L+ L PV L L +L+L + GL IP F L LK + L N+L ++
Sbjct: 516 LARLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKL 575
Query: 512 PEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP--SMKRLDLSFN 554
+F + +L L+L N I ++ ++G P ++ LD+ FN
Sbjct: 576 EPFIFDDQTSLRSLNLQKNLITSVE-KDVFGPPFQNLNSLDMRFN 619
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 110/420 (26%), Positives = 177/420 (42%), Gaps = 46/420 (10%)
Query: 251 HNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAF 310
H + T IP + P + +L++ +N++ L +F L + N ++ +E
Sbjct: 13 HLKLTHIPD---DLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELC 69
Query: 311 NGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITI 370
L + +LNL +N L++++ TF F + L+L N ++K+ S+ F+
Sbjct: 70 QILPLLKVLNLQHNELSQISDQTF---VF--CTNLTELDLMSNSIHKIKSNPFKNQ---- 120
Query: 371 FSFFQDFQKLKSLDLNGNFLINLE-STGL-EDTLDNLNVRDNQITTLSSSALNY---KLL 425
+ L LDL+ N L + + TG+ + L L + N+I L S L + L
Sbjct: 121 -------KNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSL 173
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHL---NLSRNAHLSSLPVGGFDPLKKLEVLDLAAT 482
KLDLS N LKE P F + L L N N HL+ ++ L LA
Sbjct: 174 RKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSN-TSIQNLSLANN 232
Query: 483 GLKSIPQYQFDEL--LNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSL 540
L + + F L NL L L++N+L ++ F L +L YL L NNI L S
Sbjct: 233 QLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSF 292
Query: 541 YGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYL----FPS----S 592
YGL +++ L L F + S PN + PS +
Sbjct: 293 YGLSNLRYLSLK----RAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNT 348
Query: 593 FTIHSKLKTLKLA--FNKFNYFPKELILGLSY--LQEIDLSNNQLKTIDDYDYGYLPRLR 648
FT LK L L+ F E + L++ L ++L+ N + I + + +L +LR
Sbjct: 349 FTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLR 408
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 114/280 (40%), Gaps = 31/280 (11%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
+T L+L+HN L+ L PT FT L L+ N+ +S L L L+VL+L L
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNS-ISKLEPELCQILPLLKVLNLQHNEL 85
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS----- 539
I F NL L L N + +I FKN NL LDLS+N + + ++G+
Sbjct: 86 SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLE 145
Query: 540 ---------------------LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXX 578
G S+++LDLS N L F F T K
Sbjct: 146 NLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNA 205
Query: 579 XXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSY--LQEIDLSNNQLKTI 636
L ++ ++ L LA N+ + GL + L ++DLS N L +
Sbjct: 206 QLNPHLTEKLCWE--LSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDV 263
Query: 637 DDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINL 676
+ + YLP LR I +S F+ S L+ ++L
Sbjct: 264 GNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 473 KLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNI 532
+ V D + L IP D N+ L L HN L +P F L LD N+I
Sbjct: 5 RYNVADCSHLKLTHIPD---DLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSI 61
Query: 533 VNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYF 564
L LP +K L+L N+L+ F
Sbjct: 62 SKLEPELCQILPLLKVLNLQHNELSQISDQTF 93
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Query: 381 KSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELE 439
K +D G L ++ S G+ + L+++ + TLS + LT L+L +N L+ L
Sbjct: 17 KEVDCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
Query: 440 PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLK 499
F ++ L L L+ N L+SLP+G FD L +L+ L L LKS+P FD L LK
Sbjct: 76 AGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK 134
Query: 500 YLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK 555
L L N L IP F L NL L LS N + ++ G+ L ++ + L N+
Sbjct: 135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 77/162 (47%), Gaps = 12/162 (7%)
Query: 391 INLESTGLEDTLDN----------LNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELE 439
++L+STGL D LN+ NQ+ TLS+ + L L L++N L L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 440 PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLK 499
F ++ L L L N L SLP G FD L KL+ L L L+SIP FD+L NL+
Sbjct: 100 LGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 500 YLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLY 541
L L+ N L +P F L L + L N R +LY
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLY 200
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 427 KLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKS 486
KLDL L L F + L LNL N L +L G FD L +L L LA L S
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 487 IPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM 546
+P FD L L L L N L +P +F L L L L+ N + ++ G+ L ++
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 547 KRLDLSFNKLTTFKGDYFNTKSKPNT 572
+ L LS N+L + F+ K T
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQT 183
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 16/212 (7%)
Query: 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK 282
LDL + + + +G L L +D+N+ ++ + + L L +A N++ +L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 283 ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGL 342
F L+++ L GN+L ++ G F+ L K+ L L N+L + + GAF+ L
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-----GAFDKL 154
Query: 343 AKIHILNLGYNRLNKLNSDTFQG----THITIFSFFQDFQKLKSLDL------NGNFLIN 392
+ L+L N+L + F IT+F D + ++L L N N + +
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLYLSQWIRENSNKVKD 214
Query: 393 LESTGLEDTLDNLNVRDNQIT-TLSSSALNYK 423
L ++ D + D ++ T+++ L Y+
Sbjct: 215 GTGQNLHESPDGVTCSDGKVVRTVTNETLKYE 246
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 32/175 (18%)
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
E LDL +TGL ++ F L L +L L +N L + +F +L L L L+NN + +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFT 594
L +G L + +L L N+L KS P+ F
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQL----------KSLPS-------------------GVFD 128
Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRK 649
+KLK L+L N+ P L+ LQ + LS NQL+++ +G RL K
Sbjct: 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV---PHGAFDRLGK 180
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 5/148 (3%)
Query: 209 FSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRAL 268
S + F GL L L+L NQ++ + G+ L L + +N+ S+P + L
Sbjct: 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109
Query: 269 RILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNK 328
L + N++ +L + F L+ + L N+L +I GAF+ L + L+L N+L
Sbjct: 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Query: 329 LNSDTFQGGAFNGLAKIHILNLGYNRLN 356
+ GAF+ L K+ + L N+ +
Sbjct: 170 VPH-----GAFDRLGKLQTITLFGNQFD 192
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 29/177 (16%)
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
++ L++L F L KL L+L L+++ FD+L L L LA+N L +P +
Sbjct: 43 QSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV 102
Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSX 575
F +L L L L N + +L G L +K L L+ N+L + F+
Sbjct: 103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK--------- 153
Query: 576 XXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
+ L+TL L+ N+ P L LQ I L NQ
Sbjct: 154 --------------------LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 50/103 (48%)
Query: 588 LFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRL 647
L ++F +KL L L +N+ + L+ L + L+NNQL ++ + +L +L
Sbjct: 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109
Query: 648 RKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
K + ++ F ++L+ + L+ N+L+ +P F+
Sbjct: 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 38/81 (46%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
F L L+ L L+ NQ+++I G NL L + N+ S+P + + L+ +++
Sbjct: 127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Query: 274 AYNRIGTLKADSFLSQRWLER 294
N+ + ++ +W+
Sbjct: 187 FGNQFDCSRCETLYLSQWIRE 207
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Query: 381 KSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELE 439
K +D G L ++ S G+ + L+++ + TLS + LT L+L +N L+ L
Sbjct: 17 KEVDCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
Query: 440 PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLK 499
F ++ L L L+ N L+SLP+G FD L +L+ L L LKS+P FD L LK
Sbjct: 76 AGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK 134
Query: 500 YLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK 555
L L N L IP F L NL L LS N + ++ G+ L ++ + L N+
Sbjct: 135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 427 KLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKS 486
KLDL L L F + L LNL N L +L G FD L +L L LA L S
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 487 IPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM 546
+P FD L L L L N L +P +F L L L L+ N + ++ G+ L ++
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 547 KRLDLSFNKLTTFKGDYFNTKSKPNT 572
+ L LS N+L + F+ K T
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQT 183
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 76/162 (46%), Gaps = 12/162 (7%)
Query: 391 INLESTGLEDTLDN----------LNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELE 439
++L+STGL D LN+ NQ+ TLS+ + L L L++N L L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 440 PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLK 499
F ++ L L L N L SLP G FD L KL+ L L L+SIP FD+L NL+
Sbjct: 100 LGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 500 YLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLY 541
L L+ N L +P F L L + L N R LY
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILY 200
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 32/175 (18%)
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
E LDL +TGL ++ F L L +L L +N L + +F +L L L L+NN + +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFT 594
L +G L + +L L N+L KS P+ F
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQL----------KSLPS-------------------GVFD 128
Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRK 649
+KLK L+L N+ P L+ LQ + LS NQL+++ +G RL K
Sbjct: 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV---PHGAFDRLGK 180
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 95/212 (44%), Gaps = 16/212 (7%)
Query: 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK 282
LDL + + + +G L L +D+N+ ++ + + L L +A N++ +L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 283 ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGL 342
F L+++ L GN+L ++ G F+ L K+ L L N+L + + GAF+ L
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-----GAFDKL 154
Query: 343 AKIHILNLGYNRLNKLNSDTFQG----THITIFSFFQDFQKLKSLDL------NGNFLIN 392
+ L+L N+L + F IT+F D + + L L N N + +
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKD 214
Query: 393 LESTGLEDTLDNLNVRDNQIT-TLSSSALNYK 423
L ++ D + D ++ T+++ L Y+
Sbjct: 215 GTGQNLHESPDGVTCSDGKVVRTVTNETLKYE 246
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 5/148 (3%)
Query: 209 FSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRAL 268
S + F GL L L+L NQ++ + G+ L L + +N+ S+P + L
Sbjct: 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109
Query: 269 RILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNK 328
L + N++ +L + F L+ + L N+L +I GAF+ L + L+L N+L
Sbjct: 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Query: 329 LNSDTFQGGAFNGLAKIHILNLGYNRLN 356
+ GAF+ L K+ + L N+ +
Sbjct: 170 VPH-----GAFDRLGKLQTITLFGNQFD 192
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 5/170 (2%)
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
++ L++L F L KL L+L L+++ FD+L L L LA+N L +P +
Sbjct: 43 QSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV 102
Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSX 575
F +L L L L N + +L G L +K L L+ N+L + F+ + T S
Sbjct: 103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162
Query: 576 XXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE 625
+F KL+T+ L N+F+ E++ +++E
Sbjct: 163 STNQLQSVPH-----GAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRE 207
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI 305
+L + ++ + G L L++ YN++ TL A F L + L N+L ++
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 306 EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTF 363
G F+ L ++ L LG N+L L S G F+ L K+ L L N+L + + F
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPS-----GVFDRLTKLKELRLNTNQLQSIPAGAF 151
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 50/103 (48%)
Query: 588 LFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRL 647
L ++F +KL L L +N+ + L+ L + L+NNQL ++ + +L +L
Sbjct: 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109
Query: 648 RKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
K + ++ F ++L+ + L+ N+L+ +P F+
Sbjct: 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 37/81 (45%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
F L L+ L L+ NQ+++I G NL L + N+ S+P + + L+ +++
Sbjct: 127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Query: 274 AYNRIGTLKADSFLSQRWLER 294
N+ + + +W+
Sbjct: 187 FGNQFDCSRCEILYLSQWIRE 207
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
L L N L ++ +A + L +L L+ N L SLP G FD L L+ L L L+S+
Sbjct: 68 LALGGNKLHDI--SALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 488 PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK 547
P FD+L NL YL LAHN L +P+ +F L NLT LDLS N + +L G L +K
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184
Query: 548 RLDLSFNKLTTFKGDYFN 565
L L N+L + F+
Sbjct: 185 DLRLYQNQLKSVPDGVFD 202
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 89/180 (49%), Gaps = 4/180 (2%)
Query: 353 NRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQI 412
N LN ++ + I Q ++ L L GN L ++ + L L + NQ+
Sbjct: 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQL 97
Query: 413 TTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP 470
+L + + KL L +L L N L+ L F + L +LNL+ N L SLP G FD
Sbjct: 98 QSLPNGVFD-KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDK 155
Query: 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
L L LDL+ L+S+P+ FD+L LK L L N L +P+ +F L +L Y+ L +N
Sbjct: 156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
LT L L+ N L+ L F + L L L N L SLP G FD L L L+LA L
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQL 145
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
+S+P+ FD+L NL L L++N L +PE +F L L L L N + ++ G L
Sbjct: 146 QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 205
Query: 545 SMKRLDLSFN 554
S++ + L N
Sbjct: 206 SLQYIWLHDN 215
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 33/196 (16%)
Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL 543
+KS+ Q+ L N++YL L N L +I + K L NLTYL L+ N + +L G L
Sbjct: 53 IKSVQGIQY--LPNVRYLALGGNKLHDISAL--KELTNLTYLILTGNQLQSLPNGVFDKL 108
Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLK 603
++K L L N+L + F+ + L L
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDK-----------------------------LTNLTYLN 139
Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISET 663
LA N+ PK + L+ L E+DLS NQL+++ + + L +L+ + ++ +
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG 199
Query: 664 CFFNSSQLQIINLSFN 679
F + LQ I L N
Sbjct: 200 VFDRLTSLQYIWLHDN 215
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 56/111 (50%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
F L NL+ L L +NQ++++ +G+ NL L + HN+ S+P + L L +
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
+YN++ +L F L+ + L N+L ++ G F+ L + + L N
Sbjct: 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%)
Query: 206 NPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP 265
N + S L NL L L+ NQ++++ G+ NL EL + N+ S+P +
Sbjct: 73 NKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132
Query: 266 RALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR 325
L L++A+N++ +L F L + L N+L ++ G F+ L ++ L L N+
Sbjct: 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192
Query: 326 LNKLNSDTF 334
L + F
Sbjct: 193 LKSVPDGVF 201
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 35/195 (17%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
T EL D + ++ + I S L N+R L L N++ I LK NL L +
Sbjct: 36 TQNELNSIDQIIANN-SDIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLIL 92
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
N+ S+P NG ++++ LK ++L N+L ++ G
Sbjct: 93 TGNQLQSLP----NG---------VFDKLTNLK-----------ELVLVENQLQSLPDGV 128
Query: 310 FNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQG-THI 368
F+ L + LNL +N+L L G F+ L + L+L YN+L L F T +
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPK-----GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183
Query: 369 TIFSFFQDFQKLKSL 383
+Q+ +LKS+
Sbjct: 184 KDLRLYQN--QLKSV 196
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%)
Query: 597 SKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXX 656
+ L L L N+ P + L+ L+E+ L NQL+++ D + L L
Sbjct: 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144
Query: 657 IDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
+ ++ + F + L ++LS+N+L+ LPE +F+
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 39/71 (54%)
Query: 620 LSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFN 679
L+ L + L+ NQL+++ + + L L++ + ++ + F + L +NL+ N
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 680 RLEKLPERLFN 690
+L+ LP+ +F+
Sbjct: 144 QLQSLPKGVFD 154
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 105/237 (44%), Gaps = 30/237 (12%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNY-KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
G+ + + N+I+ + +++ + LT L L N L ++ AFT + L L+L
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM 514
S NA L S+ F L +L L L GL+ + F L L+YL L N L +P+
Sbjct: 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 515 MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSS 574
F++L NLT+L L N I ++ + GL S+ RL L N++
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV------------------ 189
Query: 575 XXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN 631
++ P +F +L TL L N + P E + L LQ + L++N
Sbjct: 190 -----------AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 21/225 (9%)
Query: 259 SVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHI 318
+V + P A + + + NRI + A SF + R L + L N L I+ AF GLA +
Sbjct: 25 AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ 84
Query: 319 LNLGYN-RLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDF 377
L+L N +L ++ TF +GL ++H L+L L +L F+G + + QD
Sbjct: 85 LDLSDNAQLRSVDPATF-----HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD- 138
Query: 378 QKLKSLDLNGNFLINLESTGLED--TLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNN 434
N L L D L +L + N+I+++ A L +L L N
Sbjct: 139 ----------NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188
Query: 435 LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
+ + P AF ++ L+ L L N +LS+LP PL+ L+ L L
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRL 232
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 16/223 (7%)
Query: 142 VTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLF 201
VT S G Q +P+ I ++S +R+ GN + + F R+ L L L N+
Sbjct: 14 VTTSCPQQGLQAVPVGIPAAS----QRIFLHGNRISHVPAASFRACRN-LTILWLHSNVL 68
Query: 202 GDSLNPIFSTSEFHGLVNLRILDLSDN-QIKAIEEGILKGCDNLLELRMDHNRFTSIPSV 260
+ F GL L LDLSDN Q+++++ G L L +D +
Sbjct: 69 AR-----IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 123
Query: 261 SLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILN 320
G AL+ L + N + L D+F L + L GNR++++ AF GL + L
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183
Query: 321 LGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTF 363
L NR+ ++ AF L ++ L L N L+ L ++
Sbjct: 184 LHQNRVAHVHPH-----AFRDLGRLMTLYLFANNLSALPTEAL 221
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 97/233 (41%), Gaps = 15/233 (6%)
Query: 105 PYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDI 164
P P C +E ++ C P +P G+ SQR H + ++S
Sbjct: 1 PCPGACVCYNEPKVTTSC-----PQQGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFR 53
Query: 165 PIRRLD---FSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLR 221
R L N L R+ F+ L++L L+DN S++P + FHGL L
Sbjct: 54 ACRNLTILWLHSNVLARIDAAAFT-GLALLEQLDLSDNAQLRSVDP----ATFHGLGRLH 108
Query: 222 ILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTL 281
L L ++ + G+ +G L L + N ++P + L L + NRI ++
Sbjct: 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168
Query: 282 KADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTF 334
+F L+R++L NR+ + AF L ++ L L N L+ L ++
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 8/194 (4%)
Query: 366 THITIFSFFQDFQKLKSLDLNGNFLINLES---TGLEDTLDNLNVRDN-QITTLSSSALN 421
+H+ SF + + L L L+ N L +++ TGL L+ L++ DN Q+ ++ + +
Sbjct: 45 SHVPAASF-RACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQLRSVDPATFH 102
Query: 422 -YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLA 480
L L L L+EL P F + L +L L NA L +LP F L L L L
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLH 161
Query: 481 ATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSL 540
+ S+P+ F L +L L L N + + F++L L L L NN+ L +L
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221
Query: 541 YGLPSMKRLDLSFN 554
L +++ L L+ N
Sbjct: 222 APLRALQYLRLNDN 235
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
F GL L+ L L DN ++A+ + + NL L + NR +S+P + G +L L +
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
NR+ + +F L + L N L+ + A L + L L N
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 6/181 (3%)
Query: 506 NHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN-KLTTFKGDYF 564
N ++ +P F+ NLT L L +N + + + GL +++LDLS N +L + F
Sbjct: 42 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101
Query: 565 NTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQ 624
+ + +T L P F + L+ L L N P + L L
Sbjct: 102 HGLGRLHT-----LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156
Query: 625 EIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKL 684
+ L N++ ++ + + L L + + + F + +L + L N L L
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216
Query: 685 P 685
P
Sbjct: 217 P 217
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 77/221 (34%), Gaps = 9/221 (4%)
Query: 460 LSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNL 519
L ++PVG P + L + +P F NL L L N L I F L
Sbjct: 23 LQAVPVG--IPAASQRIF-LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79
Query: 520 LNLTYLDLSNN-NIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXX 578
L LDLS+N + ++ + +GL + L L L F ++
Sbjct: 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-----GLAALQYL 134
Query: 579 XXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDD 638
L +F L L L N+ + P+ GL L + L N++ +
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Query: 639 YDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFN 679
+ + L RL + A+ LQ + L+ N
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 105/237 (44%), Gaps = 30/237 (12%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNY-KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
G+ + + N+I+ + +++ + LT L L N L ++ AFT + L L+L
Sbjct: 27 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 86
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM 514
S NA L S+ F L +L L L GL+ + F L L+YL L N L +P+
Sbjct: 87 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 146
Query: 515 MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSS 574
F++L NLT+L L N I ++ + GL S+ RL L N++
Sbjct: 147 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV------------------ 188
Query: 575 XXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN 631
++ P +F +L TL L N + P E + L LQ + L++N
Sbjct: 189 -----------AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 107/234 (45%), Gaps = 26/234 (11%)
Query: 255 TSIP-----SVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
TS P +V + P A + + + NRI + A SF + R L + L N L I+ A
Sbjct: 15 TSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 74
Query: 310 FNGLAKIHILNLGYN-RLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHI 368
F GLA + L+L N +L ++ TF +GL ++H L+L L +L F+G
Sbjct: 75 FTGLALLEQLDLSDNAQLRSVDPATF-----HGLGRLHTLHLDRCGLQELGPGLFRGLAA 129
Query: 369 TIFSFFQDFQKLKSLDLNGNFLINLESTGLED--TLDNLNVRDNQITTLSSSAL-NYKLL 425
+ + QD N L L D L +L + N+I+++ A L
Sbjct: 130 LQYLYLQD-----------NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 178
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
+L L N + + P AF ++ L+ L L N +LS+LP PL+ L+ L L
Sbjct: 179 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRL 231
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 16/223 (7%)
Query: 142 VTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLF 201
VT S G Q +P+ I ++S +R+ GN + + F R+ L L L N+
Sbjct: 13 VTTSCPQQGLQAVPVGIPAAS----QRIFLHGNRISHVPAASFRACRN-LTILWLHSNVL 67
Query: 202 GDSLNPIFSTSEFHGLVNLRILDLSDN-QIKAIEEGILKGCDNLLELRMDHNRFTSIPSV 260
+ F GL L LDLSDN Q+++++ G L L +D +
Sbjct: 68 AR-----IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 122
Query: 261 SLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILN 320
G AL+ L + N + L D+F L + L GNR++++ AF GL + L
Sbjct: 123 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 182
Query: 321 LGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTF 363
L NR+ ++ AF L ++ L L N L+ L ++
Sbjct: 183 LHQNRVAHVHPH-----AFRDLGRLMTLYLFANNLSALPTEAL 220
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 8/194 (4%)
Query: 366 THITIFSFFQDFQKLKSLDLNGNFLINLES---TGLEDTLDNLNVRDN-QITTLSSSALN 421
+H+ SF + + L L L+ N L +++ TGL L+ L++ DN Q+ ++ + +
Sbjct: 44 SHVPAASF-RACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQLRSVDPATFH 101
Query: 422 -YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLA 480
L L L L+EL P F + L +L L NA L +LP F L L L L
Sbjct: 102 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLH 160
Query: 481 ATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSL 540
+ S+P+ F L +L L L N + + F++L L L L NN+ L +L
Sbjct: 161 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 220
Query: 541 YGLPSMKRLDLSFN 554
L +++ L L+ N
Sbjct: 221 APLRALQYLRLNDN 234
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
F GL L+ L L DN ++A+ + + NL L + NR +S+P + G +L L +
Sbjct: 124 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 183
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
NR+ + +F L + L N L+ + A L + L L N
Sbjct: 184 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 6/181 (3%)
Query: 506 NHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN-KLTTFKGDYF 564
N ++ +P F+ NLT L L +N + + + GL +++LDLS N +L + F
Sbjct: 41 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 100
Query: 565 NTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQ 624
+ + +T L P F + L+ L L N P + L L
Sbjct: 101 HGLGRLHT-----LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 155
Query: 625 EIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKL 684
+ L N++ ++ + + L L + + + F + +L + L N L L
Sbjct: 156 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 215
Query: 685 P 685
P
Sbjct: 216 P 216
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 82/242 (33%), Gaps = 18/242 (7%)
Query: 439 EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNL 498
EP T+ P L ++PVG P + L + +P F NL
Sbjct: 10 EPKVTTSCP---------QQGLQAVPVG--IPAASQRIF-LHGNRISHVPAASFRACRNL 57
Query: 499 KYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN-NIVNLRVGSLYGLPSMKRLDLSFNKLT 557
L L N L I F L L LDLS+N + ++ + +GL + L L L
Sbjct: 58 TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 117
Query: 558 TFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELI 617
F ++ L +F L L L N+ + P+
Sbjct: 118 ELGPGLFR-----GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 172
Query: 618 LGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLS 677
GL L + L N++ + + + L RL + A+ LQ + L+
Sbjct: 173 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 232
Query: 678 FN 679
N
Sbjct: 233 DN 234
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/390 (23%), Positives = 157/390 (40%), Gaps = 63/390 (16%)
Query: 207 PIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPR 266
P + F L+NL LDL+ QI I E + L L + N + +L+GP+
Sbjct: 46 PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105
Query: 267 ALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRL 326
AL+ L I ++ +Q+ LE + L N +++I+ K+ +L+ N +
Sbjct: 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165
Query: 327 N------------------KLNSDTFQG---GAFNGLAKIHILNLGYNR-----LNKLNS 360
+ LN + G GAF+ A LN G + L +
Sbjct: 166 HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKN 224
Query: 361 DTFQGTHITIFSFFQD-------FQKL-----KSLDLNGNFLINLESTGLE--DTLDNLN 406
T Q + F D F+ L +S++L ++ N+ S L L+
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284
Query: 407 VRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVG 466
+ ++ L S + L KL LS N + L + +N P+L HL++ N L G
Sbjct: 285 LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344
Query: 467 GFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLD 526
+ L+ L LDL+ +++ ++ + +NL +L L+
Sbjct: 345 CLENLENLRELDLSHDDIET----------------------SDCCNLQLRNLSHLQSLN 382
Query: 527 LSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
LS N ++L+ + P ++ LDL+F +L
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRL 412
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 151/368 (41%), Gaps = 52/368 (14%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRI--LDLSDNQIKAIEEGILKGCDNLLEL 247
T+Q L L F D + S + F GL + + ++L + I L EL
Sbjct: 226 TIQSLWLGT--FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283
Query: 248 RMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGN-RLTTIE 306
+ + +PS L G L+ L ++ N+ L S + L + ++GN + +
Sbjct: 284 DLTATHLSELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342
Query: 307 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGT 366
G L + L+L ++ + + Q L+ + LNL YN L ++ F+
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQ---LRNLSHLQSLNLSYNEPLSLKTEAFK-- 397
Query: 367 HITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLT 426
+ +L+ LDL L V+D Q S N LL
Sbjct: 398 ---------ECPQLELLDL---------------AFTRLKVKDAQ-----SPFQNLHLLK 428
Query: 427 KLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVG------GFDPLKKLEVLDLA 480
L+LSH+ L F +P L HLNL N P G L +LE+L L+
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGN----HFPKGNIQKTNSLQTLGRLEILVLS 484
Query: 481 ATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSL 540
L SI Q+ F L + ++ L+HN LT +L + YL+L++N+I ++ + SL
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI-SIILPSL 542
Query: 541 YGLPSMKR 548
+ S +R
Sbjct: 543 LPILSQQR 550
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 107/237 (45%), Gaps = 30/237 (12%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
TG+ + + + N+I+ + +++ + + LT L L N L ++ AFT + L L+L
Sbjct: 27 TGIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDL 86
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM 514
S NA L + F L L L L GL+ + F L L+YL L N+L +P+
Sbjct: 87 SDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDN 146
Query: 515 MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSS 574
F++L NLT+L L N I ++ + GL S+ RL L N +
Sbjct: 147 TFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVAR---------------- 190
Query: 575 XXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN 631
+ P +F +L TL L N + P E+++ L LQ + L++N
Sbjct: 191 -------------VHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 106/251 (42%), Gaps = 42/251 (16%)
Query: 230 IKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQ 289
++A+ GI + + NR + +P+ S R L IL + N + + A +F
Sbjct: 22 LQAVPTGIPASSQRIF---LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGL 78
Query: 290 RWLERIILRGN-RLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHIL 348
LE++ L N +L ++ F GL +H L+L L +L G F GLA + L
Sbjct: 79 TLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGP-----GLFRGLAALQYL 133
Query: 349 NLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVR 408
L N L L +T F+D L L L+GN + +V
Sbjct: 134 YLQDNNLQALPDNT-----------FRDLGNLTHLFLHGNRIP--------------SVP 168
Query: 409 DNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGF 468
++ L S L +L L N++ + P AF ++ L+ L L N +LS LP
Sbjct: 169 EHAFRGLHS-------LDRLLLHQNHVARVHPHAFRDLGRLMTLYLFAN-NLSMLPAEVL 220
Query: 469 DPLKKLEVLDL 479
PL+ L+ L L
Sbjct: 221 VPLRSLQYLRL 231
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 7/186 (3%)
Query: 374 FQDFQKLKSLDLNGNFLINLES---TGLEDTLDNLNVRDN-QITTLSSSAL-NYKLLTKL 428
FQ + L L L+ N L +++ TGL L+ L++ DN Q+ + + L L
Sbjct: 51 FQSCRNLTILWLHSNALAGIDAAAFTGLT-LLEQLDLSDNAQLRVVDPTTFRGLGHLHTL 109
Query: 429 DLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP 488
L L+EL P F + L +L L N +L +LP F L L L L + S+P
Sbjct: 110 HLDRCGLQELGPGLFRGLAALQYLYLQDN-NLQALPDNTFRDLGNLTHLFLHGNRIPSVP 168
Query: 489 QYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKR 548
++ F L +L L L NH+ + F++L L L L NN+ L L L S++
Sbjct: 169 EHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQY 228
Query: 549 LDLSFN 554
L L+ N
Sbjct: 229 LRLNDN 234
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 95/223 (42%), Gaps = 16/223 (7%)
Query: 142 VTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLF 201
VT S G Q +P I +SS +R+ GN + + F R+ L L L N
Sbjct: 13 VTTSCPQQGLQAVPTGIPASS----QRIFLHGNRISYVPAASFQSCRN-LTILWLHSNAL 67
Query: 202 GDSLNPIFSTSEFHGLVNLRILDLSDN-QIKAIEEGILKGCDNLLELRMDHNRFTSIPSV 260
+ F GL L LDLSDN Q++ ++ +G +L L +D +
Sbjct: 68 AG-----IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPG 122
Query: 261 SLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILN 320
G AL+ L + N + L ++F L + L GNR+ ++ AF GL + L
Sbjct: 123 LFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLL 182
Query: 321 LGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTF 363
L N + +++ AF L ++ L L N L+ L ++
Sbjct: 183 LHQNHVARVHPH-----AFRDLGRLMTLYLFANNLSMLPAEVL 220
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 63/159 (39%), Gaps = 5/159 (3%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+ +LD S NA R+ D L L L D L P F GL L+ L L
Sbjct: 81 LEQLDLSDNAQLRVVDPTTFRGLGHLHTLHL-DRCGLQELGPGL----FRGLAALQYLYL 135
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
DN ++A+ + + NL L + NR S+P + G +L L + N + + +
Sbjct: 136 QDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHA 195
Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
F L + L N L+ + L + L L N
Sbjct: 196 FRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Query: 586 TYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN-QLKTIDDYDYGYL 644
+Y+ +SF L L L N GL+ L+++DLS+N QL+ +D + L
Sbjct: 44 SYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGL 103
Query: 645 PRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
L + + F + LQ + L N L+ LP+ F
Sbjct: 104 GHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTF 148
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 115/262 (43%), Gaps = 39/262 (14%)
Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
VN R L+L +N I+ I K +L L++ N I + NG +L L + NR
Sbjct: 35 VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNR 94
Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
+ T+ +F L + LR N + +I AFN + + L+LG L +L +
Sbjct: 95 LTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG--ELKRL--EYISEA 150
Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
AF GL + LNLG L + + T +L+ L+L+GN L
Sbjct: 151 AFEGLVNLRYLNLGMCNLKDIPNLT-------------ALVRLEELELSGNRL------- 190
Query: 398 LEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
D +R L+S L KL L H + +E AF ++ +L LNLS N
Sbjct: 191 --DL-----IRPGSFQGLTS-------LRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 458 AHLSSLPVGGFDPLKKLEVLDL 479
+L SLP F PL +LE + L
Sbjct: 237 -NLMSLPHDLFTPLHRLERVHL 257
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 112/253 (44%), Gaps = 44/253 (17%)
Query: 208 IFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRA 267
+ T F L +L IL LS N ++ IE G G +L L + NR T++P+
Sbjct: 49 VIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPT-------- 100
Query: 268 LRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLN 327
+A +LS+ L + LR N + +I AFN + + L+LG L
Sbjct: 101 --------------QAFEYLSK--LRELWLRNNPIESIPSYAFNRVPSLRRLDLG--ELK 142
Query: 328 KLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNG 387
+L + AF GL + LNLG L + + T +L+ L+L+G
Sbjct: 143 RL--EYISEAAFEGLVNLRYLNLGMCNLKDIPNLT-------------ALVRLEELELSG 187
Query: 388 NFLINLESTGLED--TLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFT 444
N L + + +L L + Q+ T+ +A + K L +L+LSHNNL L FT
Sbjct: 188 NRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFT 247
Query: 445 NVPTLLHLNLSRN 457
+ L ++L+ N
Sbjct: 248 PLHRLERVHLNHN 260
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 98/239 (41%), Gaps = 31/239 (12%)
Query: 451 HLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
+LNL N+ + + F L+ LE+L L+ ++ I F+ L +L L L N LT
Sbjct: 39 YLNLQENS-IQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 511 IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
+P F+ L L L L NN I ++ + +PS++RLDL K
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK--------------- 142
Query: 571 NTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSN 630
Y+ ++F L+ L L P + L L+E++LS
Sbjct: 143 -------------RLEYISEAAFEGLVNLRYLNLGMCNLKDIPN--LTALVRLEELELSG 187
Query: 631 NQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
N+L I + L LRK + I F + L+ +NLS N L LP LF
Sbjct: 188 NRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLF 246
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 36/232 (15%)
Query: 348 LNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED--TLDNL 405
LNL N + + +DTF+ + L+ L L+ N + +E +L+ L
Sbjct: 40 LNLQENSIQVIRTDTFK-----------HLRHLEILQLSKNLVRKIEVGAFNGLPSLNTL 88
Query: 406 NVRDNQITTLSSSALNY-KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLP 464
+ DN++TT+ + A Y L +L L +N ++ + AF VP+L L+L L +
Sbjct: 89 ELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYIS 148
Query: 465 VGGFDPLKKLEVLDLAATGLKSIPQY----------------------QFDELLNLKYLC 502
F+ L L L+L LK IP F L +L+ L
Sbjct: 149 EAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLW 208
Query: 503 LAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
L H + I F +L +L L+LS+NN+++L L ++R+ L+ N
Sbjct: 209 LMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 33/179 (18%)
Query: 508 LTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTK 567
L E+P + +N YL+L N+I +R + L ++ L LS N + + FN
Sbjct: 26 LAEVPASIP---VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNG- 81
Query: 568 SKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEID 627
PS L TL+L N+ P + LS L+E+
Sbjct: 82 ---------------------LPS-------LNTLELFDNRLTTVPTQAFEYLSKLRELW 113
Query: 628 LSNNQLKTIDDYDYGYLPRLRKX-XXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLP 685
L NN +++I Y + +P LR+ ++ ISE F L+ +NL L+ +P
Sbjct: 114 LRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP 172
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 164/383 (42%), Gaps = 44/383 (11%)
Query: 210 STSEFHGL--VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRA 267
S + F GL NL +LDLS N + + L +++N + S SL+G
Sbjct: 243 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 302
Query: 268 LRILSMAYN------RIGTL-KADSFLSQRWL---ERIILRGNRLTTIEGGAFNGLAKIH 317
+R L++ + + +L K D F S +WL E + + N + I+ F GL +
Sbjct: 303 VRYLNLKRSFTKQSISLASLPKIDDF-SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 361
Query: 318 ILNLG--YNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQ 375
L+L + L L ++TF A + +HILNL N+++K+ SD F
Sbjct: 362 YLSLSNSFTSLRTLTNETFVSLAH---SPLHILNLTKNKISKIESDAFSW---------- 408
Query: 376 DFQKLKSLDLN----GNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLS 431
L+ LDL G L E GLE+ + + + +S L +L L
Sbjct: 409 -LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 467
Query: 432 HNNLKELE--PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI-- 487
LK ++ P+ F + L L+LS N + + L+KLE+LDL L +
Sbjct: 468 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN-DDMLEGLEKLEILDLQHNNLARLWK 526
Query: 488 ------PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLY 541
P Y L +L L L N EIP +FK+L L +DL NN+ L
Sbjct: 527 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 586
Query: 542 GLPSMKRLDLSFNKLTTFKGDYF 564
S+K L+L N +T+ + F
Sbjct: 587 NQVSLKSLNLQKNLITSVEKKVF 609
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 158/361 (43%), Gaps = 26/361 (7%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
L LD+ N I +E + + L L + HN + + + L L + N I
Sbjct: 56 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 115
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
+K + F+ Q+ L + L N L++ + G L + L L N++ L S+ A
Sbjct: 116 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 175
Query: 340 NGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLE 399
+ L K L L N++ + + F F + Q S L + L +T +
Sbjct: 176 SSLKK---LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS--LTEKLCLELANTSIR 230
Query: 400 DTLDNLNVRDNQITTLSSS---ALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSR 456
NL++ ++Q++T S++ L + LT LDLS+NNL + +F +P L + L
Sbjct: 231 ----NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 286
Query: 457 N--AHLSSLPVGGFDPLKKLEV------LDLAATGLKSIPQYQFDELLNLKYLCLAHNHL 508
N HL S + G ++ L + ++ L I + F L L++L + N +
Sbjct: 287 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 346
Query: 509 TEIPEMMFKNLLNLTYLDLSNN-----NIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDY 563
I MF L+NL YL LSN+ + N SL P + L+L+ NK++ + D
Sbjct: 347 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP-LHILNLTKNKISKIESDA 405
Query: 564 F 564
F
Sbjct: 406 F 406
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 131/474 (27%), Positives = 200/474 (42%), Gaps = 94/474 (19%)
Query: 152 QILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFST 211
Q LPM ++ L+ N L +LSDK F+ L EL L N N F
Sbjct: 75 QKLPM---------LKVLNLQHNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKNNPFVK 124
Query: 212 SEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLN--GPRALR 269
+ NL LDLS N + + + G +NL EL + +N+ ++ S L+ +L+
Sbjct: 125 QK-----NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 179
Query: 270 ILSMAYNRIGTLKADSF---------------------------LSQRWLERIILRGNRL 302
L ++ N+I F L+ + + L ++L
Sbjct: 180 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 239
Query: 303 TTIEGGAFNGL--AKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNS 360
+T F GL + +L+L YN LN + +D+F L ++ L YN + L S
Sbjct: 240 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-----LPQLEYFFLEYNNIQHLFS 294
Query: 361 DTFQGT-HITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSA 419
+ G ++ + + F K +S+ L I+ S L++LN+ DN I + S+
Sbjct: 295 HSLHGLFNVRYLNLKRSFTK-QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 353
Query: 420 ----LNYKLLTKLDLSHNNLKELEPTAFTNVP-TLLH-LNLSRNAHLSSLPVGGFDPLKK 473
+N K L+ L S +L+ L F ++ + LH LNL++N +S + F L
Sbjct: 354 FTGLINLKYLS-LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIESDAFSWLGH 411
Query: 474 LEVLDLAATGLKSIPQ----YQFDELLNL--------KYLCLAHNHLTEIPEMM------ 515
LEVLDL GL I Q ++ L N+ KYL L N +P +
Sbjct: 412 LEVLDL---GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 468
Query: 516 ------------FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
F+ L NLT LDLSNNNI N+ L GL ++ LDL N L
Sbjct: 469 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 522
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 134/294 (45%), Gaps = 51/294 (17%)
Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
L N+L + F +++ L++G+N ++KL + Q L + +LNL +N L+
Sbjct: 37 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ-----KLPMLKVLNLQHNELS 91
Query: 357 KLNSDTFQ-GTHITIFSFFQD-FQKLK-----------SLDLNGNFLINLESTGLEDTL- 402
+L+ TF T++T + QK+K +LDL+ N L ST L +
Sbjct: 92 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN---GLSSTKLGTQVQ 148
Query: 403 ----DNLNVRDNQITTLSSSALNY---KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
L + +N+I L S L+ L KL+LS N +KE P F + L L L+
Sbjct: 149 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 208
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLK--SIPQYQFD----------ELLNLKYLCL 503
N L G +KL L+LA T ++ S+ Q + NL L L
Sbjct: 209 -NVQL------GPSLTEKL-CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 260
Query: 504 AHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDL--SFNK 555
++N+L + F L L Y L NNI +L SL+GL +++ L+L SF K
Sbjct: 261 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 314
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 110/255 (43%), Gaps = 20/255 (7%)
Query: 405 LNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
LN+ NQ+ L ++ Y LT LD+ N + +LEP +P L LNL N LS L
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQL 93
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
F L L L + ++ I F + NL L L+HN L+ L NL
Sbjct: 94 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 153
Query: 524 YLDLSNNNIVNLRVGSL--YGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXX 581
L LSNN I L+ L + S+K+L+LS N++ F F+ +
Sbjct: 154 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR--------LFGL 205
Query: 582 XXXXTYLFPSSFT------IHSKLKTLKLAFNKFNYFPKELILGLSY--LQEIDLSNNQL 633
L PS ++ ++ L L+ ++ + LGL + L +DLS N L
Sbjct: 206 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 265
Query: 634 KTIDDYDYGYLPRLR 648
+ + + +LP+L
Sbjct: 266 NVVGNDSFAWLPQLE 280
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 429 DLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP 488
D SH L ++ TN+ L NL+ N L LP F +L LD+ + +
Sbjct: 15 DCSHLKLTQVPDDLPTNITVL---NLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLE 70
Query: 489 QYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKR 548
+L LK L L HN L+++ + F NLT L L +N+I ++ ++
Sbjct: 71 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 130
Query: 549 LDLSFNKLTTFK 560
LDLS N L++ K
Sbjct: 131 LDLSHNGLSSTK 142
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
EV D + L +P D N+ L L HN L +P F LT LD+ N I
Sbjct: 12 EVADCSHLKLTQVPD---DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 68
Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYF 564
L LP +K L+L N+L+ F
Sbjct: 69 LEPELCQKLPMLKVLNLQHNELSQLSDKTF 98
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 164/383 (42%), Gaps = 44/383 (11%)
Query: 210 STSEFHGL--VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRA 267
S + F GL NL +LDLS N + + L +++N + S SL+G
Sbjct: 248 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 307
Query: 268 LRILSMAYN------RIGTL-KADSFLSQRWL---ERIILRGNRLTTIEGGAFNGLAKIH 317
+R L++ + + +L K D F S +WL E + + N + I+ F GL +
Sbjct: 308 VRYLNLKRSFTKQSISLASLPKIDDF-SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 366
Query: 318 ILNLG--YNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQ 375
L+L + L L ++TF A + +HILNL N+++K+ SD F
Sbjct: 367 YLSLSNSFTSLRTLTNETFVSLAH---SPLHILNLTKNKISKIESDAFSW---------- 413
Query: 376 DFQKLKSLDLN----GNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLS 431
L+ LDL G L E GLE+ + + + +S L +L L
Sbjct: 414 -LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 472
Query: 432 HNNLKELE--PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI-- 487
LK ++ P+ F + L L+LS N + + L+KLE+LDL L +
Sbjct: 473 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN-DDMLEGLEKLEILDLQHNNLARLWK 531
Query: 488 ------PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLY 541
P Y L +L L L N EIP +FK+L L +DL NN+ L
Sbjct: 532 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 591
Query: 542 GLPSMKRLDLSFNKLTTFKGDYF 564
S+K L+L N +T+ + F
Sbjct: 592 NQVSLKSLNLQKNLITSVEKKVF 614
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 158/361 (43%), Gaps = 26/361 (7%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
L LD+ N I +E + + L L + HN + + + L L + N I
Sbjct: 61 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 120
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
+K + F+ Q+ L + L N L++ + G L + L L N++ L S+ A
Sbjct: 121 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 180
Query: 340 NGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLE 399
+ L K L L N++ + + F F + Q S L + L +T +
Sbjct: 181 SSLKK---LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS--LTEKLCLELANTSIR 235
Query: 400 DTLDNLNVRDNQITTLSSS---ALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSR 456
NL++ ++Q++T S++ L + LT LDLS+NNL + +F +P L + L
Sbjct: 236 ----NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 291
Query: 457 N--AHLSSLPVGGFDPLKKLEV------LDLAATGLKSIPQYQFDELLNLKYLCLAHNHL 508
N HL S + G ++ L + ++ L I + F L L++L + N +
Sbjct: 292 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 351
Query: 509 TEIPEMMFKNLLNLTYLDLSNN-----NIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDY 563
I MF L+NL YL LSN+ + N SL P + L+L+ NK++ + D
Sbjct: 352 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP-LHILNLTKNKISKIESDA 410
Query: 564 F 564
F
Sbjct: 411 F 411
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 131/474 (27%), Positives = 200/474 (42%), Gaps = 94/474 (19%)
Query: 152 QILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFST 211
Q LPM ++ L+ N L +LSDK F+ L EL L N N F
Sbjct: 80 QKLPM---------LKVLNLQHNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKNNPFVK 129
Query: 212 SEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLN--GPRALR 269
+ NL LDLS N + + + G +NL EL + +N+ ++ S L+ +L+
Sbjct: 130 QK-----NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 184
Query: 270 ILSMAYNRIGTLKADSF---------------------------LSQRWLERIILRGNRL 302
L ++ N+I F L+ + + L ++L
Sbjct: 185 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 244
Query: 303 TTIEGGAFNGL--AKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNS 360
+T F GL + +L+L YN LN + +D+F L ++ L YN + L S
Sbjct: 245 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-----LPQLEYFFLEYNNIQHLFS 299
Query: 361 DTFQGT-HITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSA 419
+ G ++ + + F K +S+ L I+ S L++LN+ DN I + S+
Sbjct: 300 HSLHGLFNVRYLNLKRSFTK-QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 358
Query: 420 ----LNYKLLTKLDLSHNNLKELEPTAFTNVP-TLLH-LNLSRNAHLSSLPVGGFDPLKK 473
+N K L+ L S +L+ L F ++ + LH LNL++N +S + F L
Sbjct: 359 FTGLINLKYLS-LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIESDAFSWLGH 416
Query: 474 LEVLDLAATGLKSIPQ----YQFDELLNL--------KYLCLAHNHLTEIPEMM------ 515
LEVLDL GL I Q ++ L N+ KYL L N +P +
Sbjct: 417 LEVLDL---GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 473
Query: 516 ------------FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
F+ L NLT LDLSNNNI N+ L GL ++ LDL N L
Sbjct: 474 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 527
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 110/255 (43%), Gaps = 20/255 (7%)
Query: 405 LNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
LN+ NQ+ L ++ Y LT LD+ N + +LEP +P L LNL N LS L
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQL 98
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
F L L L + ++ I F + NL L L+HN L+ L NL
Sbjct: 99 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 158
Query: 524 YLDLSNNNIVNLRVGSL--YGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXX 581
L LSNN I L+ L + S+K+L+LS N++ F F+ +
Sbjct: 159 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR--------LFGL 210
Query: 582 XXXXTYLFPSSFT------IHSKLKTLKLAFNKFNYFPKELILGLSY--LQEIDLSNNQL 633
L PS ++ ++ L L+ ++ + LGL + L +DLS N L
Sbjct: 211 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 270
Query: 634 KTIDDYDYGYLPRLR 648
+ + + +LP+L
Sbjct: 271 NVVGNDSFAWLPQLE 285
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 134/294 (45%), Gaps = 51/294 (17%)
Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
L N+L + F +++ L++G+N ++KL + Q L + +LNL +N L+
Sbjct: 42 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ-----KLPMLKVLNLQHNELS 96
Query: 357 KLNSDTFQ-GTHITIFSFFQD-FQKLK-----------SLDLNGNFLINLESTGLEDTL- 402
+L+ TF T++T + QK+K +LDL+ N L ST L +
Sbjct: 97 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN---GLSSTKLGTQVQ 153
Query: 403 ----DNLNVRDNQITTLSSSALNY---KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
L + +N+I L S L+ L KL+LS N +KE P F + L L L+
Sbjct: 154 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 213
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLK--SIPQYQFD----------ELLNLKYLCL 503
N L G +KL L+LA T ++ S+ Q + NL L L
Sbjct: 214 -NVQL------GPSLTEKL-CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 265
Query: 504 AHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDL--SFNK 555
++N+L + F L L Y L NNI +L SL+GL +++ L+L SF K
Sbjct: 266 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 319
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 429 DLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP 488
D SH L ++ TN+ L NL+ N L LP F +L LD+ + +
Sbjct: 20 DCSHLKLTQVPDDLPTNITVL---NLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLE 75
Query: 489 QYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKR 548
+L LK L L HN L+++ + F NLT L L +N+I ++ ++
Sbjct: 76 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 135
Query: 549 LDLSFNKLTTFK 560
LDLS N L++ K
Sbjct: 136 LDLSHNGLSSTK 147
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
EV D + L +P D N+ L L HN L +P F LT LD+ N I
Sbjct: 17 EVADCSHLKLTQVPD---DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 73
Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYF 564
L LP +K L+L N+L+ F
Sbjct: 74 LEPELCQKLPMLKVLNLQHNELSQLSDKTF 103
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 164/383 (42%), Gaps = 44/383 (11%)
Query: 210 STSEFHGL--VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRA 267
S + F GL NL +LDLS N + + L +++N + S SL+G
Sbjct: 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297
Query: 268 LRILSMAYN------RIGTL-KADSFLSQRWL---ERIILRGNRLTTIEGGAFNGLAKIH 317
+R L++ + + +L K D F S +WL E + + N + I+ F GL +
Sbjct: 298 VRYLNLKRSFTKQSISLASLPKIDDF-SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356
Query: 318 ILNLG--YNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQ 375
L+L + L L ++TF A + +HILNL N+++K+ SD F
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAH---SPLHILNLTKNKISKIESDAFSW---------- 403
Query: 376 DFQKLKSLDLN----GNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLS 431
L+ LDL G L E GLE+ + + + +S L +L L
Sbjct: 404 -LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462
Query: 432 HNNLKELE--PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI-- 487
LK ++ P+ F + L L+LS N + + L+KLE+LDL L +
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN-DDMLEGLEKLEILDLQHNNLARLWK 521
Query: 488 ------PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLY 541
P Y L +L L L N EIP +FK+L L +DL NN+ L
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581
Query: 542 GLPSMKRLDLSFNKLTTFKGDYF 564
S+K L+L N +T+ + F
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVF 604
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 158/361 (43%), Gaps = 26/361 (7%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
L LD+ N I +E + + L L + HN + + + L L + N I
Sbjct: 51 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
+K + F+ Q+ L + L N L++ + G L + L L N++ L S+ A
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170
Query: 340 NGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLE 399
+ L K L L N++ + + F F + Q S L + L +T +
Sbjct: 171 SSLKK---LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS--LTEKLCLELANTSIR 225
Query: 400 DTLDNLNVRDNQITTLSSS---ALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSR 456
NL++ ++Q++T S++ L + LT LDLS+NNL + +F +P L + L
Sbjct: 226 ----NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281
Query: 457 N--AHLSSLPVGGFDPLKKLEV------LDLAATGLKSIPQYQFDELLNLKYLCLAHNHL 508
N HL S + G ++ L + ++ L I + F L L++L + N +
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341
Query: 509 TEIPEMMFKNLLNLTYLDLSNN-----NIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDY 563
I MF L+NL YL LSN+ + N SL P + L+L+ NK++ + D
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP-LHILNLTKNKISKIESDA 400
Query: 564 F 564
F
Sbjct: 401 F 401
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 127/460 (27%), Positives = 196/460 (42%), Gaps = 85/460 (18%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
++ L+ N L +LSDK F+ L EL L N N F + NL LDL
Sbjct: 75 LKVLNLQHNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKNNPFVKQK-----NLITLDL 128
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLN--GPRALRILSMAYNRIGTLKA 283
S N + + + G +NL EL + +N+ ++ S L+ +L+ L ++ N+I
Sbjct: 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188
Query: 284 DSF---------------------------LSQRWLERIILRGNRLTTIEGGAFNGL--A 314
F L+ + + L ++L+T F GL
Sbjct: 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 248
Query: 315 KIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGT-HITIFSF 373
+ +L+L YN LN + +D+F L ++ L YN + L S + G ++ +
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAW-----LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303
Query: 374 FQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSA----LNYKLLTKLD 429
+ F K +S+ L I+ S L++LN+ DN I + S+ +N K L+ L
Sbjct: 304 KRSFTK-QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS-LS 361
Query: 430 LSHNNLKELEPTAFTNVP-TLLH-LNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
S +L+ L F ++ + LH LNL++N +S + F L LEVLDL GL I
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIESDAFSWLGHLEVLDL---GLNEI 417
Query: 488 PQ----YQFDELLNL--------KYLCLAHNHLTEIPEMM------------------FK 517
Q ++ L N+ KYL L N +P + F+
Sbjct: 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477
Query: 518 NLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
L NLT LDLSNNNI N+ L GL ++ LDL N L
Sbjct: 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 110/255 (43%), Gaps = 20/255 (7%)
Query: 405 LNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
LN+ NQ+ L ++ Y LT LD+ N + +LEP +P L LNL N LS L
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQL 88
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
F L L L + ++ I F + NL L L+HN L+ L NL
Sbjct: 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148
Query: 524 YLDLSNNNIVNLRVGSL--YGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXX 581
L LSNN I L+ L + S+K+L+LS N++ F F+ +
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR--------LFGL 200
Query: 582 XXXXTYLFPSSFT------IHSKLKTLKLAFNKFNYFPKELILGLSY--LQEIDLSNNQL 633
L PS ++ ++ L L+ ++ + LGL + L +DLS N L
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260
Query: 634 KTIDDYDYGYLPRLR 648
+ + + +LP+L
Sbjct: 261 NVVGNDSFAWLPQLE 275
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 134/294 (45%), Gaps = 51/294 (17%)
Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
L N+L + F +++ L++G+N ++KL + Q L + +LNL +N L+
Sbjct: 32 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ-----KLPMLKVLNLQHNELS 86
Query: 357 KLNSDTFQ-GTHITIFSFFQD-FQKLK-----------SLDLNGNFLINLESTGLEDTL- 402
+L+ TF T++T + QK+K +LDL+ N L ST L +
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN---GLSSTKLGTQVQ 143
Query: 403 ----DNLNVRDNQITTLSSSALNY---KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
L + +N+I L S L+ L KL+LS N +KE P F + L L L+
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLK--SIPQYQFD----------ELLNLKYLCL 503
N L G +KL L+LA T ++ S+ Q + NL L L
Sbjct: 204 -NVQL------GPSLTEKL-CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255
Query: 504 AHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDL--SFNK 555
++N+L + F L L Y L NNI +L SL+GL +++ L+L SF K
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 429 DLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP 488
D SH L ++ TN+ L NL+ N L LP F +L LD+ + +
Sbjct: 10 DCSHLKLTQVPDDLPTNITVL---NLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLE 65
Query: 489 QYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKR 548
+L LK L L HN L+++ + F NLT L L +N+I ++ ++
Sbjct: 66 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125
Query: 549 LDLSFNKLTTFK 560
LDLS N L++ K
Sbjct: 126 LDLSHNGLSSTK 137
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
EV D + L +P D N+ L L HN L +P F LT LD+ N I
Sbjct: 7 EVADCSHLKLTQVPD---DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63
Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYF 564
L LP +K L+L N+L+ F
Sbjct: 64 LEPELCQKLPMLKVLNLQHNELSQLSDKTF 93
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 116/262 (44%), Gaps = 39/262 (14%)
Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
VN R L+L +N I+ I K +L L++ N I + NG +L L + NR
Sbjct: 35 VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNR 94
Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
+ T+ +F L + LR N + +I AFN + + L+LG L +L +
Sbjct: 95 LTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG--ELKRL--EYISEA 150
Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
AF GL + LNLG L + + T +L+ L+L+GN L +L
Sbjct: 151 AFEGLVNLRYLNLGMCNLKDIPNLT-------------ALVRLEELELSGNRL-DL---- 192
Query: 398 LEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
+R L+S L KL L H + +E AF ++ +L LNLS N
Sbjct: 193 ---------IRPGSFQGLTS-------LRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 458 AHLSSLPVGGFDPLKKLEVLDL 479
+L SLP F PL +LE + L
Sbjct: 237 -NLMSLPHDLFTPLHRLERVHL 257
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 91/200 (45%), Gaps = 21/200 (10%)
Query: 208 IFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRA 267
+ T F L +L IL LS N ++ IE G G +L L + NR T++P+ +
Sbjct: 49 VIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSK 108
Query: 268 LRILSMAYNRIGTLKADSFLSQRWLERIILRG-NRLTTIEGGAFNGLAKIHILNLGYNRL 326
LR L + N I ++ + +F L R+ L RL I AF GL + LNLG L
Sbjct: 109 LRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNL 168
Query: 327 NKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQG---------THITIFSF---- 373
+ + T L ++ L L NRL+ + +FQG H + +
Sbjct: 169 KDIPNLT-------ALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNA 221
Query: 374 FQDFQKLKSLDLNGNFLINL 393
F D + L+ L+L+ N L++L
Sbjct: 222 FDDLKSLEELNLSHNNLMSL 241
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 98/239 (41%), Gaps = 31/239 (12%)
Query: 451 HLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
+LNL N+ + + F L+ LE+L L+ ++ I F+ L +L L L N LT
Sbjct: 39 YLNLQENS-IQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 511 IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
+P F+ L L L L NN I ++ + +PS++RLDL K
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK--------------- 142
Query: 571 NTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSN 630
Y+ ++F L+ L L P + L L+E++LS
Sbjct: 143 -------------RLEYISEAAFEGLVNLRYLNLGMCNLKDIPN--LTALVRLEELELSG 187
Query: 631 NQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
N+L I + L LRK + I F + L+ +NLS N L LP LF
Sbjct: 188 NRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLF 246
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 36/232 (15%)
Query: 348 LNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED--TLDNL 405
LNL N + + +DTF+ + L+ L L+ N + +E +L+ L
Sbjct: 40 LNLQENSIQVIRTDTFK-----------HLRHLEILQLSKNLVRKIEVGAFNGLPSLNTL 88
Query: 406 NVRDNQITTLSSSALNY-KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLP 464
+ DN++TT+ + A Y L +L L +N ++ + AF VP+L L+L L +
Sbjct: 89 ELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYIS 148
Query: 465 VGGFDPLKKLEVLDLAATGLKSIPQY----------------------QFDELLNLKYLC 502
F+ L L L+L LK IP F L +L+ L
Sbjct: 149 EAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLW 208
Query: 503 LAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
L H + I F +L +L L+LS+NN+++L L ++R+ L+ N
Sbjct: 209 LMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 30/177 (16%)
Query: 510 EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSK 569
E+ E+ +N YL+L N+I +R + L ++ L LS N + + FN
Sbjct: 25 ELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNG--- 81
Query: 570 PNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLS 629
PS L TL+L N+ P + LS L+E+ L
Sbjct: 82 -------------------LPS-------LNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 630 NNQLKTIDDYDYGYLPRLRKX-XXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLP 685
NN +++I Y + +P LR+ ++ ISE F L+ +NL L+ +P
Sbjct: 116 NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP 172
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 92/396 (23%), Positives = 150/396 (37%), Gaps = 75/396 (18%)
Query: 207 PIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPR 266
P F L+NL LDL+ QI I E + L L + N + SLNGP+
Sbjct: 43 PTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPK 102
Query: 267 ALR------------------------ILSMAYNRIGTLKADSFLSQRWLERIILRGNRL 302
+L+ L + N I ++K R L+ + + N +
Sbjct: 103 SLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAI 162
Query: 303 TTIEGGAFNGLAKIHILNLGYN-------RLNKLNSDTFQGGAFNGLAKIHILNLGYNRL 355
I L + L+L +N L +S FQ F G + ++
Sbjct: 163 HYISREDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVI------F 216
Query: 356 NKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED--------------- 400
N L + T Q + F D + + S L G +++ES L++
Sbjct: 217 NGLQNSTTQSLWLGTFEDIDD-EDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFT 275
Query: 401 TLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHL 460
L L++ + L S LL KL LS N+ +L + N P+L HL + N
Sbjct: 276 QLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKK 335
Query: 461 SSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLL 520
L VG + L L+ LDL+ +++ ++ + KNL
Sbjct: 336 LHLGVGCLEKLGNLQTLDLSHNDIEA----------------------SDCCSLQLKNLS 373
Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
+L L+LS+N + L+ + P ++ LDL+F +L
Sbjct: 374 HLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRL 409
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 111/453 (24%), Positives = 185/453 (40%), Gaps = 70/453 (15%)
Query: 163 DIPIRRL---DFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSL---------NPIFS 210
D P R L DF NA+ +S + R Q + L+ N G+++ + IF
Sbjct: 146 DFPARNLKVLDFQNNAIHYISRE---DMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQ 202
Query: 211 TSEFHGLVNLRIL------------------DLSDNQIKAIEEGILKG-CDNLLE-LRMD 250
+ F G NL ++ D+ D I + +LKG C+ +E L +
Sbjct: 203 SLNFGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDISS---AMLKGLCEMSVESLNLQ 259
Query: 251 HNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGN---RLTTIEG 307
+RF+ I S + L+ L + + L + L++++L N +L I
Sbjct: 260 EHRFSDISSTTFQCFTQLQELDLTATHLKGLPS-GMKGLNLLKKLVLSVNHFDQLCQISA 318
Query: 308 GAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTH 367
F L ++I + KL+ G L + L+L +N + + + Q
Sbjct: 319 ANFPSLTHLYI----RGNVKKLHLGV---GCLEKLGNLQTLDLSHNDIEASDCCSLQ--- 368
Query: 368 ITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSA-----LNY 422
++ L++L+L+ N + L+S ++ L + D T L +A N
Sbjct: 369 ------LKNLSHLQTLNLSHNEPLGLQSQAFKEC-PQLELLDLAFTRLHINAPQSPFQNL 421
Query: 423 KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLK---KLEVLDL 479
L L+L++ L +P L HLNL N H + + L+ LEVL L
Sbjct: 422 HFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGN-HFQDGTITKTNLLQTVGSLEVLIL 480
Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539
++ GL SI Q F L + ++ L+HN LT +L + YL+L+ N+I +
Sbjct: 481 SSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRL 539
Query: 540 LYGLPSMKRLDLSFNKL-TTFKGDYFNTKSKPN 571
L L ++LS N L T +F T K N
Sbjct: 540 LPILSQQSTINLSHNPLDCTCSNIHFLTWYKEN 572
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 135/298 (45%), Gaps = 37/298 (12%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
++ L+ + N + +++D+ F D LQ L L+ NL G+ +S F+GL + +DL
Sbjct: 292 LKVLNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGE-----LYSSNFYGLPKVAYIDL 345
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFT------SIPSVSLNGPRAL---------RI 270
N I I++ K + L L + N T SIP + L+G + + +
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANL 405
Query: 271 LSMAYNRIGTLKADSFLSQR-WLERIILRGNRLTTIEGGAF-NGLAKIHILNLGYNRLNK 328
+ ++ NR+ L FL + L+ +IL NR ++ G + + L LG N L
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465
Query: 329 LNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN 388
F GL+ + +L L +N LN L F +H+T L+ L LN N
Sbjct: 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF--SHLT---------ALRGLSLNSN 514
Query: 389 FLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNN-LKELEPTAFTN 445
L L L L+ L++ NQ+ L+ + + L+ LD++HN + E E + F N
Sbjct: 515 RLTVLSHNDLPANLEILDISRNQL--LAPNPDVFVSLSVLDITHNKFICECELSTFIN 570
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 103/377 (27%), Positives = 164/377 (43%), Gaps = 73/377 (19%)
Query: 248 RMDHNRF---TSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLT- 303
R+ RF T +P V R L +++N I T+ A SF +++ G++ T
Sbjct: 7 RIAFYRFCNLTQVPQVLNTTERLL----LSFNYIRTVTASSFPFLE-QLQLLELGSQYTP 61
Query: 304 -TIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG--------AFNGLAKIHILNLGYNR 354
TI+ AF L + IL+LG +++ L+ D FQG F GL+ +L GY R
Sbjct: 62 LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA-VLKDGYFR 120
Query: 355 ----LNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN--FLI----------------N 392
L +L+ Q + + F LKS+D + N FL+ +
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 393 LESTGLED----------------TLDNLNVRDN----QITTLSSSALNYKLLTKLDLSH 432
L + L L+ L+V N IT S+A++ L L+H
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240
Query: 433 N---------NLKELEPTAFTNVP--TLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA 481
+ N+K+ + F + ++ HL+LS + + SL F+ LK L+VL+LA
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS-HGFVFSLNSRVFETLKDLKVLNLAY 299
Query: 482 TGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLY 541
+ I F L NL+ L L++N L E+ F L + Y+DL N+I ++ +
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359
Query: 542 GLPSMKRLDLSFNKLTT 558
L ++ LDL N LTT
Sbjct: 360 FLEKLQTLDLRDNALTT 376
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 119/493 (24%), Positives = 207/493 (41%), Gaps = 79/493 (16%)
Query: 202 GDSLNPIFSTSE-FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELR----------MD 250
G P+ E F L NLRILDL ++I + +G +L ELR +
Sbjct: 56 GSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK 115
Query: 251 HNRFTSIPS-----VSLNGPRALRILSMAYNRIGTLKADSF---------------LSQR 290
F ++ + +S N R+L L ++ ++ +LK+ F L +
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSL-YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174
Query: 291 WLERIILRGN----RLTTIEGGAFNGLAK--IHILNLGYNRLNKLNSDTFQGG-----AF 339
L L N R++ G N + IL++ N + F AF
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234
Query: 340 NGLAKIHIL--NLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
+ + HI+ G++ + + +TF G + ++ LDL+ F+ +L S
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARS---------SVRHLDLSHGFVFSLNSRV 285
Query: 398 LE--DTLDNLNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLLHLN 453
E L LN+ N+I ++ A Y L L L+LS+N L EL + F +P + +++
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAF-YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344
Query: 454 LSRNAHLSSLPVGGFDPLKKLEVLDL---AATGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
L +N H++ + F L+KL+ LDL A T + IP ++ + L+ N L
Sbjct: 345 LQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP--------SIPDIFLSGNKLVT 395
Query: 511 IPEM-MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSK 569
+P++ + NL++L+ L N +I+ L +P ++ L L+ N+ ++ GD
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYF----LLRVPHLQILILNQNRFSSCSGDQ-TPSEN 450
Query: 570 PNTSSXX--XXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEID 627
P+ T L F S L+ L L N N P + L+ L+ +
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510
Query: 628 LSNNQLKTIDDYD 640
L++N+L + D
Sbjct: 511 LNSNRLTVLSHND 523
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 113/272 (41%), Gaps = 41/272 (15%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
F L +L++L+L+ N+I I + G DNL L + +N + S + G + + +
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTIE-----------GGAFNGLAKI----HI 318
N I ++ +F L+ + LR N LTTI G L KI ++
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANL 405
Query: 319 LNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDT-----------FQGTH 367
++L NRL L+ F + + IL L NR + + D F G +
Sbjct: 406 IHLSENRLENLDILYF----LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461
Query: 368 ITIFSF--------FQDFQKLKSLDLNGNFLINLESTGLED--TLDNLNVRDNQITTLSS 417
+ ++ F+ L+ L LN N+L +L L L++ N++T LS
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521
Query: 418 SALNYKLLTKLDLSHNNLKELEPTAFTNVPTL 449
+ L L LD+S N L P F ++ L
Sbjct: 522 NDLPAN-LEILDISRNQLLAPNPDVFVSLSVL 552
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 116/272 (42%), Gaps = 29/272 (10%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNA-HLSSLPVGGFDPLKKLEVLDLAATG 483
L LDL + + L P AF + L L L + L G F LK L LDL+
Sbjct: 75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134
Query: 484 LKSIPQY-QFDELLNLKYLCLAHNHLTEIPEMMFKNLLN--LTYLDLSNNNIVNLRVGSL 540
++S+ + F +L +LK + + N + + E + L L++ L+ N++ + RV
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS-RVSVD 193
Query: 541 YGLP-------SMKRLDLSFNKLTT-FKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSS 592
+G ++ LD+S N T G++ N SK S ++ +
Sbjct: 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH-------HIMGAG 246
Query: 593 FTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXX 652
F H+ + F L S ++ +DLS+ + +++ + L L+
Sbjct: 247 FGFHNIKDPDQNTFAG---------LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297
Query: 653 XXXXIDAISETCFFNSSQLQIINLSFNRLEKL 684
I+ I++ F+ LQ++NLS+N L +L
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
TG+ L++ N + +L + + LT+L L N L+ L F + +L +LNL
Sbjct: 24 TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM 514
S N L SLP G FD L +L+ L L L+S+P FD+L LK L L N L +P+
Sbjct: 84 STN-QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142
Query: 515 MFKNLLNLTYLDLSNN 530
+F L +L Y+ L +N
Sbjct: 143 VFDRLTSLQYIWLHDN 158
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
T LDL N+LK L F + +L L L N L SLP G F+ L L L+L+ L+
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS 545
S+P FD+L LK L L N L +P+ +F L L L L N + ++ G L S
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 546 MKRLDLSFN 554
++ + L N
Sbjct: 150 LQYIWLHDN 158
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%)
Query: 477 LDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR 536
LDL LKS+P FDEL +L L L N L +P +F L +LTYL+LS N + +L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 537 VGSLYGLPSMKRLDLSFNKLTTFKGDYFN 565
G L +K L L+ N+L + F+
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFD 121
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 6/127 (4%)
Query: 444 TNVPTLL-----HLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNL 498
T+VPT + +L+L N+ L SLP G FD L L L L L+S+P F++L +L
Sbjct: 20 TSVPTGIPAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78
Query: 499 KYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558
YL L+ N L +P +F L L L L+ N + +L G L +K L L N+L +
Sbjct: 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138
Query: 559 FKGDYFN 565
F+
Sbjct: 139 VPDGVFD 145
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%)
Query: 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK 282
LDL N +K++ G+ +L +L + N+ S+P+ N +L L+++ N++ +L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 283 ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTF 334
F L+ + L N+L ++ G F+ L ++ L L N+L + F
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 259 SVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHI 318
SV P L + N + +L F L ++ L GN+L ++ G FN L +
Sbjct: 21 SVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80
Query: 319 LNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQG-THITIFSFFQDF 377
LNL N+L L + G F+ L ++ L L N+L L F T + +Q+
Sbjct: 81 LNLSTNQLQSLPN-----GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN- 134
Query: 378 QKLKSL 383
+LKS+
Sbjct: 135 -QLKSV 139
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%)
Query: 597 SKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXX 656
+ L L L NK P + L+ L ++LS NQL+++ + + L +L++
Sbjct: 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ 111
Query: 657 IDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNY 697
+ ++ + F +QL+ + L N+L+ +P+ +F+ Y
Sbjct: 112 LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 52/108 (48%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
F L +L L L N+++++ G+ +L L + N+ S+P+ + L+ L++
Sbjct: 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNL 321
N++ +L F L+ + L N+L ++ G F+ L + + L
Sbjct: 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 155
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 45/96 (46%)
Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXX 654
I ++ L L N P + L+ L ++ L N+L+++ + + L L
Sbjct: 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85
Query: 655 XXIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
+ ++ F +QL+ + L+ N+L+ LP+ +F+
Sbjct: 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD 121
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Query: 430 LSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQ 489
L N + +LEP F ++ L L L N L +LPVG FD L +L VLDL L +P
Sbjct: 47 LHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105
Query: 490 YQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM 546
FD L++LK L + N LTE+P + + L +LT+L L N + ++ G+ L S+
Sbjct: 106 AVFDRLVHLKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%)
Query: 492 FDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDL 551
FD L+NLK L L N L +P +F +L LT LDL N + L L +K L +
Sbjct: 60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119
Query: 552 SFNKLT 557
NKLT
Sbjct: 120 CCNKLT 125
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 10/131 (7%)
Query: 253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNG 312
R S+P+ P +IL + N+I L+ F S L+ + L N+L + G F+
Sbjct: 30 RHASVPA---GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS 86
Query: 313 LAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFS 372
L ++ +L+LG N+L L S F+ L + L + N+L +L + TH+T +
Sbjct: 87 LTQLTVLDLGTNQLTVLPS-----AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLA 141
Query: 373 FFQDFQKLKSL 383
Q+ +LKS+
Sbjct: 142 LDQN--QLKSI 150
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 13/109 (11%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
F L+NL+ L L NQ+ A+ G+ L L + N+ T +PS + L+ L M
Sbjct: 60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119
Query: 274 AYNRIGTLKADSFLSQRWLERII------LRGNRLTTIEGGAFNGLAKI 316
N++ L R +ER+ L N+L +I GAF+ L+ +
Sbjct: 120 CCNKLTELP-------RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 24/112 (21%)
Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
N +IL L DNQI +E G+ NL EL + N+
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYL------------------------GSNQ 75
Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKL 329
+G L F S L + L N+LT + F+ L + L + N+L +L
Sbjct: 76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL 127
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 113/245 (46%), Gaps = 21/245 (8%)
Query: 265 PRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
P R L++ N I ++AD+F LE + L N + IE GAFNGLA ++ L L N
Sbjct: 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133
Query: 325 RLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLD 384
L + S GAF L+K+ L L N + + S F + + +KL+ +
Sbjct: 134 WLTVIPS-----GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188
Query: 385 LNGNF--LINLESTGLEDTLDNLNVRD-NQITTLSSSALNYKLLTKLDLSHNNLKELEPT 441
G F L NL+ L N++D +T L L +L++S N+ E+ P
Sbjct: 189 -EGAFEGLFNLKYL----NLGMCNIKDMPNLTPLVG-------LEELEMSGNHFPEIRPG 236
Query: 442 AFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYL 501
+F + +L L + N+ +S + FD L L L+LA L S+P F L L L
Sbjct: 237 SFHGLSSLKKLWV-MNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295
Query: 502 CLAHN 506
L HN
Sbjct: 296 HLHHN 300
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 109/242 (45%), Gaps = 20/242 (8%)
Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
N R L+L +N I+ I+ + +L L++ N I + NG +L L + N +
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135
Query: 279 GTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGA 338
+ + +F L + LR N + +I AFN + + L+LG L KL + GA
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG--ELKKL--EYISEGA 191
Query: 339 FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGL 398
F GL + LNLG + + + T L+ L+++GN +
Sbjct: 192 FEGLFNLKYLNLGMCNIKDMPNLT-------------PLVGLEELEMSGNHFPEIRPGSF 238
Query: 399 E--DTLDNLNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
+L L V ++Q++ + +A + L +L+L+HNNL L FT + L+ L+L
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298
Query: 456 RN 457
N
Sbjct: 299 HN 300
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 92/244 (37%), Gaps = 31/244 (12%)
Query: 451 HLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
+LNL N ++ + F L LEVL L ++ I F+ L +L L L N LT
Sbjct: 79 YLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137
Query: 511 IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
IP F+ L L L L NN I ++ + +PS+ RLDL K
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK--------------- 182
Query: 571 NTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSN 630
Y+ +F LK L L P + L L+E+++S
Sbjct: 183 -------------KLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSG 227
Query: 631 NQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
N I + L L+K + I F + L +NL+ N L LP LF
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287
Query: 691 TFLY 694
Y
Sbjct: 288 PLRY 291
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 100/239 (41%), Gaps = 45/239 (18%)
Query: 319 LNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQ 378
LNL N + + +DTF+ L + +L LG N + ++ F G
Sbjct: 80 LNLMENNIQMIQADTFRH-----LHHLEVLQLGRNSIRQIEVGAFNG-----------LA 123
Query: 379 KLKSLDLNGNFLINLESTGLE--DTLDNLNVRDNQITTLSSSALN-YKLLTKLDLSHNNL 435
L +L+L N+L + S E L L +R+N I ++ S A N L +LDL L
Sbjct: 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG--EL 181
Query: 436 KELE---PTAFTNVPTLLHLNLS---------------------RNAHLSSLPVGGFDPL 471
K+LE AF + L +LNL H + G F L
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL 241
Query: 472 KKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
L+ L + + + I + FD L +L L LAHN+L+ +P +F L L L L +N
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 33/203 (16%)
Query: 191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMD 250
L+EL ++ N F P FHGL +L+ L + ++Q+ IE G +L+EL +
Sbjct: 220 LEELEMSGNHF-----PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274
Query: 251 HNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERII-------------- 296
HN +S+P R L L + +N D WL I
Sbjct: 275 HNNLSSLPHDLFTPLRYLVELHLHHNPWNC-DCDILWLAWWLREYIPTNSTCCGRCHAPM 333
Query: 297 -LRGNRLTTIEGGAFNGLAKIHI-----LNLGYNRLNKLNSDTFQGGAF-----NGLAKI 345
+RG L ++ +F A + LN+ R+ +L T + NG
Sbjct: 334 HMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVLS 393
Query: 346 HILNLGYNRLNKLNSDTFQGTHI 368
H + R++ LN T +H+
Sbjct: 394 HASR--HPRISVLNDGTLNFSHV 414
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 70/179 (39%), Gaps = 33/179 (18%)
Query: 508 LTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTK 567
L+E+P+ + N YL+L NNI ++ + L ++ L L N + + FN
Sbjct: 66 LSEVPQGIPSNT---RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL 122
Query: 568 SKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEID 627
+ L TL+L N P LS L+E+
Sbjct: 123 -----------------------------ASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153
Query: 628 LSNNQLKTIDDYDYGYLPRL-RKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLP 685
L NN +++I Y + +P L R ++ ISE F L+ +NL ++ +P
Sbjct: 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%)
Query: 217 LVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
LV L L++S N I G G +L +L + +++ + I + +G +L L++A+N
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276
Query: 277 RIGTLKADSFLSQRWLERIILRGN 300
+ +L D F R+L + L N
Sbjct: 277 NLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 4/135 (2%)
Query: 193 ELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHN 252
ELRL +N F + +T F L LR ++ S+N+I IEEG +G + E+ + N
Sbjct: 36 ELRLNNNEF----TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNG 312
R ++ G +L+ L + NRI + DSF+ + + L N++TT+ GAF+
Sbjct: 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151
Query: 313 LAKIHILNLGYNRLN 327
L + LNL N N
Sbjct: 152 LHSLSTLNLLANPFN 166
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 5/142 (3%)
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGG-FDPLKKLEVLDLAATGL 484
T +D S+ L ++ P L LN N + L G F L +L ++ + +
Sbjct: 14 TTVDCSNQKLNKI-PEHIPQYTAELRLN---NNEFTVLEATGIFKKLPQLRKINFSNNKI 69
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
I + F+ + + L N L + MFK L +L L L +N I + S GL
Sbjct: 70 TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS 129
Query: 545 SMKRLDLSFNKLTTFKGDYFNT 566
S++ L L N++TT F+T
Sbjct: 130 SVRLLSLYDNQITTVAPGAFDT 151
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 601 TLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYD-YGYLPRLRKXXXXXXXIDA 659
T+ + K N P+ + Y E+ L+NN+ ++ + LP+LRK I
Sbjct: 15 TVDCSNQKLNKIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD 71
Query: 660 ISETCFFNSSQLQIINLSFNRLEKLPERLF 689
I E F +S + I L+ NRLE + ++F
Sbjct: 72 IEEGAFEGASGVNEILLTSNRLENVQHKMF 101
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 31/134 (23%)
Query: 297 LRGNRLTTIEG-GAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRL 355
L N T +E G F L ++ +N N++ + + GAF G + ++ + L NRL
Sbjct: 39 LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-----EEGAFEGASGVNEILLTSNRL 93
Query: 356 NKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFL--------INLESTGLEDTLDNLNV 407
+ F+G + LK+L L N + I L S L L++
Sbjct: 94 ENVQHKMFKG-----------LESLKTLMLRSNRITCVGNDSFIGLSSVRL------LSL 136
Query: 408 RDNQITTLSSSALN 421
DNQITT++ A +
Sbjct: 137 YDNQITTVAPGAFD 150
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 9/134 (6%)
Query: 504 AHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYG-LPSMKRLDLSFNKLTTFKGD 562
++ L +IPE + + L L+NN L ++ LP +++++ S NK+T +
Sbjct: 19 SNQKLNKIPEHIPQYT---AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG 75
Query: 563 YFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSY 622
F S N + F LKTL L N+ + +GLS
Sbjct: 76 AFEGASGVN-----EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130
Query: 623 LQEIDLSNNQLKTI 636
++ + L +NQ+ T+
Sbjct: 131 VRLLSLYDNQITTV 144
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 156/340 (45%), Gaps = 40/340 (11%)
Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
N +I+ ++ ++ + +L + L ++ + I + + ++ L M +N I
Sbjct: 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105
Query: 279 GTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGA 338
L F + L ++L N L+++ G F+ K+ L++ N L ++ DTFQ
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT- 164
Query: 339 FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLEST-G 397
+ L L NRL TH+ D + SL + N NL ST
Sbjct: 165 ----TSLQNLQLSSNRL----------THV-------DLSLIPSL-FHANVSYNLLSTLA 202
Query: 398 LEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAF-TNVPTLLHLNLSR 456
+ ++ L+ N I + +N + LT L L HNNL + TA+ N P L+ ++LS
Sbjct: 203 IPIAVEELDASHNSINVV-RGPVNVE-LTILKLQHNNLTD---TAWLLNYPGLVEVDLSY 257
Query: 457 NAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIP--EM 514
N L + F +++LE L ++ L ++ Y + LK L L+HNHL + +
Sbjct: 258 NE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQP 315
Query: 515 MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
F L NL YLD +N+IV L++ + + ++K L LS N
Sbjct: 316 QFDRLENL-YLD--HNSIVTLKLSTHH---TLKNLTLSHN 349
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 104/239 (43%), Gaps = 43/239 (17%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTS-----IPSV-------- 260
FH L L +S+N ++ IE+ + +L L++ NR T IPS+
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN 196
Query: 261 ---SLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLT-TIEGGAFNGLAKI 316
+L P A+ L ++N I ++ + L+ L+ N LT T + GL ++
Sbjct: 197 LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHNNLTDTAWLLNYPGLVEV 253
Query: 317 HILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQD 376
+L YN L K+ F + ++ L + NRL LN + Q
Sbjct: 254 ---DLSYNELEKI-----MYHPFVKMQRLERLYISNNRLVALN------------LYGQP 293
Query: 377 FQKLKSLDLNGNFLINLESTGLE-DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNN 434
LK LDL+ N L+++E + D L+NL + N I TL S + L L LSHN+
Sbjct: 294 IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLSHND 350
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%)
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
+N+ + LP D +++E+L+L ++ I Y F ++ L + N + +P +
Sbjct: 53 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 112
Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKS 568
F+N+ LT L L N++ +L G + P + L +S N L + D F +
Sbjct: 113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 81/159 (50%), Gaps = 13/159 (8%)
Query: 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLK----ELEPTAFTNVPTLLHLNLSRNAHL 460
L+ Q+ + S +Y L LDLSHNNL E PT TN+ +LL LS N HL
Sbjct: 23 LSCSKQQLPNVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLL---LSHN-HL 76
Query: 461 SSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLL 520
+ + F P+ L LDL++ L ++ ++ F +L L+ L L +NH+ + F+++
Sbjct: 77 NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136
Query: 521 NLTYLDLSNNNIVNLRVGSLY---GLPSMKRLDLSFNKL 556
L L LS N I V + LP + LDLS NKL
Sbjct: 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 4/127 (3%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
L L LSHN+L + AF VP L +L+LS N HL +L F L+ LEVL L +
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHI 124
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKN---LLNLTYLDLSNNNIVNLRVGSLY 541
+ + F+++ L+ L L+ N ++ P + K+ L L LDLS+N + L + L
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184
Query: 542 GLPSMKR 548
LP+ +
Sbjct: 185 KLPAWVK 191
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%)
Query: 597 SKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXX 656
+ L +L L+ N N+ E + + L+ +DLS+N L T+D++ + L L
Sbjct: 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123
Query: 657 IDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
I + F + +QLQ + LS N++ + P L
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 33/178 (18%)
Query: 476 VLDLAATGLKSI-PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
+LDL+ L + ++ L NL L L+HNHL I F + NL YLDLS+N++
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102
Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFT 594
L L +++ L L N + + F ++
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ------------------------- 137
Query: 595 IHSKLKTLKLAFNKFNYFPKELIL---GLSYLQEIDLSNNQLKTIDDYDYGYLPRLRK 649
L+ L L+ N+ + FP ELI L L +DLS+N+LK + D LP K
Sbjct: 138 ----LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 38/167 (22%)
Query: 169 LDFSGNALRRLSDKLFSPHRDT-LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSD 227
LD S N L RL + ++P R T L L L+ N LN I S+ F + NLR LDLS
Sbjct: 44 LDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHN----HLNFI-SSEAFVPVPNLRYLDLSS 97
Query: 228 NQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFL 287
N + ++E + F+ + +AL +L + N I + ++F
Sbjct: 98 NHLHTLDEFL----------------FSDL--------QALEVLLLYNNHIVVVDRNAFE 133
Query: 288 SQRWLERIILRGNRLTT-----IEGGAFNGLAKIHILNLGYNRLNKL 329
L+++ L N+++ I+ G N L K+ +L+L N+L KL
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDG--NKLPKLMLLDLSSNKLKKL 178
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 84/200 (42%), Gaps = 45/200 (22%)
Query: 257 IPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKI 316
+P+V + P +L +++N + L+A+ W RLT +
Sbjct: 30 LPNVPQSLPSYTALLDLSHNNLSRLRAE------W------TPTRLTNL----------- 66
Query: 317 HILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQD 376
H L L +N LN ++S+ AF + + L+L N L+ L D F F D
Sbjct: 67 HSLLLSHNHLNFISSE-----AFVPVPNLRYLDLSSNHLHTL--DEF---------LFSD 110
Query: 377 FQKLKSLDLNGNFLINLESTGLED--TLDNLNVRDNQITTLSSSALN--YKL--LTKLDL 430
Q L+ L L N ++ ++ ED L L + NQI+ + KL L LDL
Sbjct: 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170
Query: 431 SHNNLKELEPTAFTNVPTLL 450
S N LK+L T +P +
Sbjct: 171 SSNKLKKLPLTDLQKLPAWV 190
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
T+L+L N L+ L F + L L+LS+N + SLP G FD L KL +L L L+
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQ 89
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
S+P FD+L LK L L N L +P+ +F L +L + L N
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 442 AFTNVPTLLHLNLSR----NAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLN 497
T+VPT + + +R + L SLP G FD L +L L L+ ++S+P FD+L
Sbjct: 18 GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77
Query: 498 LKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
L L L N L +P +F L L L L N + ++ G L S++++ L N
Sbjct: 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 460 LSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNL 519
L+S+P G +LE L + L+S+P FD+L L L L+ N + +P+ +F L
Sbjct: 19 LTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75
Query: 520 LNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFN 565
LT L L N + +L G L +K L L N+L + F+
Sbjct: 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFD 121
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI 305
E+R + TS+P+ P + L + N++ +L F L ++ L N++ ++
Sbjct: 11 EIRCNSKGLTSVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL 67
Query: 306 EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTF 363
G F+ L K+ IL L N+L L + G F+ L ++ L L N+L + F
Sbjct: 68 PDGVFDKLTKLTILYLHENKLQSLPN-----GVFDKLTQLKELALDTNQLKSVPDGIF 120
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXX 654
I S L+L NK P + L+ L ++ LS NQ++++ D + L +L
Sbjct: 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85
Query: 655 XXIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN-------TFLYTN 696
+ ++ F +QL+ + L N+L+ +P+ +F+ +L+TN
Sbjct: 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%)
Query: 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK 282
L+L N+++++ G+ L +L + N+ S+P + L IL + N++ +L
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 283 ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
F L+ + L N+L ++ G F+ L + + L N
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 58/169 (34%), Gaps = 56/169 (33%)
Query: 481 ATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSL 540
+ GL S+P L+ L N L +P +F L LT L LS N I +L G
Sbjct: 16 SKGLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV- 71
Query: 541 YGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLK 600
F+KLT KL
Sbjct: 72 ------------FDKLT----------------------------------------KLT 79
Query: 601 TLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRK 649
L L NK P + L+ L+E+ L NQLK++ D + L L+K
Sbjct: 80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK 128
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
F L L L LS NQI+++ +G+ L L + N+ S+P+ + L+ L++
Sbjct: 48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGN 300
N++ ++ F L++I L N
Sbjct: 108 DTNQLKSVPDGIFDRLTSLQKIWLHTN 134
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 157/342 (45%), Gaps = 40/342 (11%)
Query: 217 LVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
L N +I+ ++ ++ + +L + L ++ + I + + ++ L M +N
Sbjct: 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109
Query: 277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 336
I L F + L ++L N L+++ G F+ K+ L++ N L ++ DTFQ
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169
Query: 337 GAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLEST 396
+ L L NRL TH+ D + SL + N NL ST
Sbjct: 170 T-----TSLQNLQLSSNRL----------THV-------DLSLIPSL-FHANVSYNLLST 206
Query: 397 -GLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAF-TNVPTLLHLNL 454
+ ++ L+ N I + +N + LT L L HNNL + TA+ N P L+ ++L
Sbjct: 207 LAIPIAVEELDASHNSINVV-RGPVNVE-LTILKLQHNNLTD---TAWLLNYPGLVEVDL 261
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIP-- 512
S N L + F +++LE L ++ L ++ Y + LK L L+HNHL +
Sbjct: 262 SYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERN 319
Query: 513 EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
+ F L NL YLD +N+IV L++ + + ++K L LS N
Sbjct: 320 QPQFDRLENL-YLD--HNSIVTLKLSTHH---TLKNLTLSHN 355
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%)
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
+N+ + LP D +++E+L+L ++ I Y F ++ L + N + +P +
Sbjct: 59 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 118
Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKS 568
F+N+ LT L L N++ +L G + P + L +S N L + D F +
Sbjct: 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 104/239 (43%), Gaps = 43/239 (17%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTS-----IPSV-------- 260
FH L L +S+N ++ IE+ + +L L++ NR T IPS+
Sbjct: 143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN 202
Query: 261 ---SLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLT-TIEGGAFNGLAKI 316
+L P A+ L ++N I ++ + L + L+ N LT T + GL ++
Sbjct: 203 LLSTLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDTAWLLNYPGLVEV 259
Query: 317 HILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQD 376
+L YN L K+ F + ++ L + NRL LN + Q
Sbjct: 260 ---DLSYNELEKI-----MYHPFVKMQRLERLYISNNRLVALN------------LYGQP 299
Query: 377 FQKLKSLDLNGNFLINLESTGLE-DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNN 434
LK LDL+ N L+++E + D L+NL + N I TL S + L L LSHN+
Sbjct: 300 IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLSHND 356
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 119/267 (44%), Gaps = 46/267 (17%)
Query: 222 ILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTL 281
+LDL +N I + + KG +L L + +N+ + I + + R L+ L ++ N + +
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117
Query: 282 KADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG 341
+ S L + + NR+ + G F+GL ++ + +G N L + F+ GAF+G
Sbjct: 118 PPNLPSS---LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG---NPLENSGFEPGAFDG 171
Query: 342 LAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDT 401
L K++ L + +L + D L +T
Sbjct: 172 L-KLNYLRISEAKLTGIPKD------------------------------------LPET 194
Query: 402 LDNLNVRDNQITTLS-SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHL 460
L+ L++ N+I + L Y L +L L HN ++ +E + + +PTL L+L N L
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-L 253
Query: 461 SSLPVGGFDPLKKLEVLDLAATGLKSI 487
S +P G D LK L+V+ L + +
Sbjct: 254 SRVPAGLPD-LKLLQVVYLHTNNITKV 279
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 18/214 (8%)
Query: 436 KELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDEL 495
KE+ P TLL L +N +S L F L+ L L L + I + F L
Sbjct: 50 KEISPDT-----TLLDL---QNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101
Query: 496 LNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK 555
L+ L ++ NHL EIP + +L+ L D N I + G GL +M +++ N
Sbjct: 102 RKLQKLYISKNHLVEIPPNLPSSLVELRIHD---NRIRKVPKGVFSGLRNMNCIEMGGNP 158
Query: 556 LTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKE 615
L N+ +P L + L L L NK E
Sbjct: 159 LE-------NSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELE 211
Query: 616 LILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRK 649
+L S L + L +NQ++ I++ +LP LR+
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 104/237 (43%), Gaps = 60/237 (25%)
Query: 166 IRRLDFSG-----------NALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEF 214
+R+ DF G N + ++ +K FSP R LQ+L ++ N + + P +S
Sbjct: 69 LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR-KLQKLYISKNHLVE-IPPNLPSS-- 124
Query: 215 HGLVNLRILDLSDNQIKAIEEGILKGCDNL---------LE----------------LRM 249
LV LRI DN+I+ + +G+ G N+ LE LR+
Sbjct: 125 --LVELRI---HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRI 179
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
+ T IP + P L L + +N+I ++ + L L R+ L N++ IE G+
Sbjct: 180 SEAKLTGIPK---DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236
Query: 310 FNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGY---NRLNKLNSDTF 363
+ L + L+L N+L+++ + GL + +L + Y N + K+ + F
Sbjct: 237 LSFLPTLRELHLDNNKLSRVPA---------GLPDLKLLQVVYLHTNNITKVGVNDF 284
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 586 TYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLP 645
TY F H L+ ++ + PKE+ + L DL NN + + D+ L
Sbjct: 22 TYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLL---DLQNNDISELRKDDFKGLQ 78
Query: 646 RLRKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL 693
L I I E F +LQ + +S N L ++P L ++ +
Sbjct: 79 HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLV 126
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 106/272 (38%), Gaps = 68/272 (25%)
Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
L+ N++T I+ G F L +H L L N+++K++ GAF L K+ L L N+L
Sbjct: 59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-----GAFAPLVKLERLYLSKNQLK 113
Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
+L + TL L V +N+IT +
Sbjct: 114 ELPEK------------------------------------MPKTLQELRVHENEITKVR 137
Query: 417 SSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLE 475
S N + ++L N LK S + G F +KKL
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKS-----------------------SGIENGAFQGMKKLS 174
Query: 476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL 535
+ +A T + +IPQ L L L N +T++ K L NL L LS N+I +
Sbjct: 175 YIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTK 567
GSL P ++ L L+ NKL G + K
Sbjct: 232 DNGSLANTPHLRELHLNNNKLVKVPGGLADHK 263
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 108/247 (43%), Gaps = 33/247 (13%)
Query: 265 PRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
P +L + N+I +K F + + L +IL N+++ I GAF L K+ L L N
Sbjct: 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 325 RLNKLNSD----------------TFQGGAFNGLAKIHILNLGYNRLNK--LNSDTFQGT 366
+L +L + FNGL ++ ++ LG N L + + FQG
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG- 169
Query: 367 HITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLL 425
+ ++ D N I GL +L L++ N+IT + +++L L
Sbjct: 170 -------MKKLSYIRIADTN----ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 218
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
KL LS N++ ++ + N P L L+L+ N L +P GG K ++V+ L +
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVP-GGLADHKYIQVVYLHNNNIS 276
Query: 486 SIPQYQF 492
+I F
Sbjct: 277 AIGSNDF 283
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 29/198 (14%)
Query: 164 IPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGD-----------------SLN 206
+ + RL S N L+ L +K+ TLQELR+ +N N
Sbjct: 100 VKLERLYLSKNQLKELPEKM----PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155
Query: 207 PIFSTS----EFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSL 262
P+ S+ F G+ L + ++D I I +G+ +L EL +D N+ T + + SL
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASL 212
Query: 263 NGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLG 322
G L L +++N I + S + L + L N+L + GG + I ++ L
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH-KYIQVVYLH 271
Query: 323 YNRLNKLNSDTFQGGAFN 340
N ++ + S+ F +N
Sbjct: 272 NNNISAIGSNDFCPPGYN 289
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 90/233 (38%), Gaps = 33/233 (14%)
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
+N ++ + G F LK L L L + I F L+ L+ L L+ N L E+PE M
Sbjct: 60 QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119
Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSX 575
K L L + N I +R GL M ++L N L +
Sbjct: 120 PKTL---QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------- 159
Query: 576 XXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKT 635
+ + +F KL +++A P+ L L+ E+ L N++
Sbjct: 160 ----------SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGNKITK 206
Query: 636 IDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLPERL 688
+D L L K I A+ N+ L+ ++L+ N+L K+P L
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 626 IDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLP 685
+DL NN++ I D D+ L L I IS F +L+ + LS N+L++LP
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 686 ERLFNTF 692
E++ T
Sbjct: 117 EKMPKTL 123
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 106/272 (38%), Gaps = 68/272 (25%)
Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
L+ N++T I+ G F L +H L L N+++K++ GAF L K+ L L N+L
Sbjct: 59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-----GAFAPLVKLERLYLSKNQLK 113
Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
+L + TL L V +N+IT +
Sbjct: 114 ELPEK------------------------------------MPKTLQELRVHENEITKVR 137
Query: 417 SSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLE 475
S N + ++L N LK S + G F +KKL
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKS-----------------------SGIENGAFQGMKKLS 174
Query: 476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL 535
+ +A T + +IPQ L L L N +T++ K L NL L LS N+I +
Sbjct: 175 YIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTK 567
GSL P ++ L L+ NKL G + K
Sbjct: 232 DNGSLANTPHLRELHLNNNKLVKVPGGLADHK 263
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 108/247 (43%), Gaps = 33/247 (13%)
Query: 265 PRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
P +L + N+I +K F + + L +IL N+++ I GAF L K+ L L N
Sbjct: 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 325 RLNKLNSD----------------TFQGGAFNGLAKIHILNLGYNRLNK--LNSDTFQGT 366
+L +L + FNGL ++ ++ LG N L + + FQG
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG- 169
Query: 367 HITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLL 425
+ ++ D N I GL +L L++ N+IT + +++L L
Sbjct: 170 -------MKKLSYIRIADTN----ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 218
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
KL LS N++ ++ + N P L L+L+ N L +P GG K ++V+ L +
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVP-GGLADHKYIQVVYLHNNNIS 276
Query: 486 SIPQYQF 492
+I F
Sbjct: 277 AIGSNDF 283
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 29/198 (14%)
Query: 164 IPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGD-----------------SLN 206
+ + RL S N L+ L +K+ TLQELR+ +N N
Sbjct: 100 VKLERLYLSKNQLKELPEKM----PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155
Query: 207 PIFSTS----EFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSL 262
P+ S+ F G+ L + ++D I I +G+ +L EL +D N+ T + + SL
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASL 212
Query: 263 NGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLG 322
G L L +++N I + S + L + L N+L + GG + I ++ L
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH-KYIQVVYLH 271
Query: 323 YNRLNKLNSDTFQGGAFN 340
N ++ + S+ F +N
Sbjct: 272 NNNISAIGSNDFCPPGYN 289
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 90/233 (38%), Gaps = 33/233 (14%)
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
+N ++ + G F LK L L L + I F L+ L+ L L+ N L E+PE M
Sbjct: 60 QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119
Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSX 575
K L L + N I +R GL M ++L N L +
Sbjct: 120 PKTL---QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------- 159
Query: 576 XXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKT 635
+ + +F KL +++A P+ L L+ E+ L N++
Sbjct: 160 ----------SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGNKITK 206
Query: 636 IDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLPERL 688
+D L L K I A+ N+ L+ ++L+ N+L K+P L
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 626 IDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLP 685
+DL NN++ I D D+ L L I IS F +L+ + LS N+L++LP
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 686 ERLFNTF 692
E++ T
Sbjct: 117 EKMPKTL 123
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 94/382 (24%), Positives = 168/382 (43%), Gaps = 47/382 (12%)
Query: 207 PIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPR 266
P + F L+NL LDL+ QI + E + L + + N + SL GP+
Sbjct: 45 PTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPK 104
Query: 267 ALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRL 326
L+ L + I L+ + LE + L N +++I + +L+ N +
Sbjct: 105 FLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAI 164
Query: 327 NKLN-SDTFQGGAFNGLAKIHILNLGYN-------RLNKLNSDTFQ----GTHITIFSFF 374
+ ++ DT N L + L+L +N S FQ G + +F F
Sbjct: 165 HYISRKDT------NSLEQATNLSLNFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFIIF 218
Query: 375 QDFQK--LKSL------DLNGNFLINLESTGLED-TLDNLNVRDNQITTLSSSALN-YKL 424
+ Q L+SL D + +L + GL D +++++N++ ++ + LSSS +
Sbjct: 219 KGLQNSTLQSLWLGTFEDTDDQYLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTR 278
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNA--HLSSLPVGGFDPLKKLEV------ 476
+ +LDL+ +L L P+ + +L L L+ N+ L + F L+ L +
Sbjct: 279 VQELDLTAAHLNGL-PSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRK 337
Query: 477 LDLAATGLKSIPQYQFDELLNLKYLCLAHNHL--TEIPEMMFKNLLNLTYLDLSNNNIVN 534
LDL L ++L NL+ L L+H+ + ++ + KNL +L YL+LS N +
Sbjct: 338 LDLGTRCL--------EKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLG 389
Query: 535 LRVGSLYGLPSMKRLDLSFNKL 556
L + P ++ LD++F L
Sbjct: 390 LEDQAFKECPQLELLDVAFTHL 411
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 146/353 (41%), Gaps = 60/353 (16%)
Query: 292 LERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLG 351
+E I L+ +R + + F ++ L+L LN L S N L K+ +
Sbjct: 255 VESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGI---EGMNSLKKLVLNANS 311
Query: 352 YNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFL-INLESTGLEDTLDNLNVRDN 410
+++L ++N+ +F L+ L + GN ++L + LE L+NL D
Sbjct: 312 FDQLCQINAASFPS--------------LRDLYIKGNMRKLDLGTRCLEK-LENLQKLDL 356
Query: 411 QITTLSSSAL------NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLP 464
+ + +S N + L L+LS+N LE AF P L L+++ P
Sbjct: 357 SHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAP 416
Query: 465 VGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLL---- 520
F L L VL+L+ L + Q+ L +L++L L N + + NLL
Sbjct: 417 HSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQD-GSISKTNLLQMVG 475
Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXX 580
+L L LS+ N++++ + +GL ++ LDLS N LT GD + S
Sbjct: 476 SLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLT---GDSMDALS------------ 520
Query: 581 XXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQL 633
H K L +A N P L+ LS I+LS+N L
Sbjct: 521 ---------------HLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 111/449 (24%), Positives = 190/449 (42%), Gaps = 71/449 (15%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLF-------------GDSLNPIFSTS 212
++ LDF NA+ +S K DT L A NL G ++ IF +
Sbjct: 154 LKVLDFQNNAIHYISRK------DT-NSLEQATNLSLNFNGNDIKGIEPGAFISKIFQSL 206
Query: 213 EFHGLVNLRIL--DLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNG--PRAL 268
+F G +NL I+ L ++ ++++ G + D+ + S + G ++
Sbjct: 207 KFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDD-----------QYLTSATFEGLCDMSV 255
Query: 269 RILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGG--AFNGLAKIHILNLGYNRL 326
+++ +R L + +F ++ + L L + G N L K+ + +++L
Sbjct: 256 ESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQL 315
Query: 327 NKLNSDTFQGGAFNGLAKIHI------LNLGYNRLNKL-NSDTFQGTHITIFSF------ 373
++N+ +F L ++I L+LG L KL N +H I +
Sbjct: 316 CQINA-----ASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQ 370
Query: 374 FQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSA-----LNYKLLTKL 428
++ + L+ L+L+ N + LE ++ L + D T L A N LL L
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKEC-PQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 429 DLSHNNLKELEPTAFTNVPTLLHLNLSRNAHL--SSLPVGGFDPLKKLEVLDLAATGLKS 486
+LSH L + L HLNL N+ S + LE+L L++ L S
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLS 489
Query: 487 IPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM 546
I Q F L N+ +L L+HN LT +L L YL++++NNI R+ + LP++
Sbjct: 490 IDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNI---RIIPPHLLPAL 545
Query: 547 KR---LDLSFNKL-TTFKGDYFNTKSKPN 571
+ ++LS N L T +F T K N
Sbjct: 546 SQQSIINLSHNPLDCTCSNIHFITWYKEN 574
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLS 461
L LN+ ++T L +L LDLSHN L+ L P +P L L++S N L+
Sbjct: 57 LTQLNLDRCELTKLQVDG-TLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFN-RLT 113
Query: 462 SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN 521
SLP+G L +L+ L L LK++P L+ L LA+N LTE+P + L N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 522 LTYLDLSNNNIVNLRVG 538
L L L N++ + G
Sbjct: 174 LDTLLLQENSLYTIPKG 190
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 247 LRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE 306
L + HN+ S+P + P AL +L +++NR+ +L + L+ + L+GN L T+
Sbjct: 82 LDLSHNQLQSLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 307 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGT 366
G K+ L+L N+L +L + G NGL + L L N L + F G+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPA-----GLLNGLENLDTLLLQENSLYTIPKGFF-GS 194
Query: 367 HITIFSFFQ 375
H+ F+F
Sbjct: 195 HLLPFAFLH 203
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 5/167 (2%)
Query: 405 LNVRDNQITTLS-SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
L++ +N + T S ++ + Y LT+L+L L +L+ +P L L+LS N L SL
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHN-QLQSL 92
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
P+ G L L VLD++ L S+P L L+ L L N L +P + L
Sbjct: 93 PLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
L L+NN + L G L GL ++ L L N L T +F + P
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 62/140 (44%), Gaps = 1/140 (0%)
Query: 377 FQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLK 436
+ +L L+L+ L L+ G L L++ NQ+ +L LT LD+S N L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 437 ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELL 496
L A + L L L N L +LP G P KLE L LA L +P + L
Sbjct: 114 SLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 497 NLKYLCLAHNHLTEIPEMMF 516
NL L L N L IP+ F
Sbjct: 173 NLDTLLLQENSLYTIPKGFF 192
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
L LDLS NQ++++ + + L L + NR TS+P +L G L+ L + N +
Sbjct: 79 LGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRL 326
TL LE++ L N+LT + G NGL + L L N L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%)
Query: 217 LVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
L L +LD+S N++ ++ G L+G L EL + N ++P L L LS+A N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFN 311
++ L A L+ ++L+ N L TI G F
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
GL L+ L L N++K + G+L L +L + +N+ T +P+ LNG L L +
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGN 300
N + T+ F L L GN
Sbjct: 180 QENSLYTI-PKGFFGSHLLPFAFLHGN 205
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 39/95 (41%)
Query: 599 LKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXID 658
L L ++FN+ P + GL LQE+ L N+LKT+ P+L K +
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 659 AISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL 693
+ L + L N L +P+ F + L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLS 461
L LN+ ++T L +L LDLSHN L+ L P +P L L++S N L+
Sbjct: 57 LTQLNLDRCELTKLQVDG-TLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFN-RLT 113
Query: 462 SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN 521
SLP+G L +L+ L L LK++P L+ L LA+N LTE+P + L N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 522 LTYLDLSNNNIVNLRVG 538
L L L N++ + G
Sbjct: 174 LDTLLLQENSLYTIPKG 190
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 247 LRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE 306
L + HN+ S+P + P AL +L +++NR+ +L + L+ + L+GN L T+
Sbjct: 82 LDLSHNQLQSLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 307 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGT 366
G K+ L+L N+L +L + G NGL + L L N L + F G+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPA-----GLLNGLENLDTLLLQENSLYTIPKGFF-GS 194
Query: 367 HITIFSFFQ 375
H+ F+F
Sbjct: 195 HLLPFAFLH 203
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 5/167 (2%)
Query: 405 LNVRDNQITTLS-SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
L++ +N + T S ++ + Y LT+L+L L +L+ +P L L+LS N L SL
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHN-QLQSL 92
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
P+ G L L VLD++ L S+P L L+ L L N L +P + L
Sbjct: 93 PLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
L L+NN + L G L GL ++ L L N L T +F + P
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 62/140 (44%), Gaps = 1/140 (0%)
Query: 377 FQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLK 436
+ +L L+L+ L L+ G L L++ NQ+ +L LT LD+S N L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 437 ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELL 496
L A + L L L N L +LP G P KLE L LA L +P + L
Sbjct: 114 SLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 497 NLKYLCLAHNHLTEIPEMMF 516
NL L L N L IP+ F
Sbjct: 173 NLDTLLLQENSLYTIPKGFF 192
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
L LDLS NQ++++ + + L L + NR TS+P +L G L+ L + N +
Sbjct: 79 LGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRL 326
TL LE++ L N+LT + G NGL + L L N L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%)
Query: 217 LVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
L L +LD+S N++ ++ G L+G L EL + N ++P L L LS+A N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFN 311
++ L A L+ ++L+ N L TI G F
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
GL L+ L L N++K + G+L L +L + +N+ T +P+ LNG L L +
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGN 300
N + T+ F L L GN
Sbjct: 180 QENSLYTIPK-GFFGSHLLPFAFLHGN 205
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 39/95 (41%)
Query: 599 LKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXID 658
L L ++FN+ P + GL LQE+ L N+LKT+ P+L K +
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 659 AISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL 693
+ L + L N L +P+ F + L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLS 461
L LN+ ++T L +L LDLSHN L+ L P +P L L++S N L+
Sbjct: 57 LTQLNLDRCELTKLQVDG-TLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFN-RLT 113
Query: 462 SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN 521
SLP+G L +L+ L L LK++P L+ L LA+N LTE+P + L N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 522 LTYLDLSNNNIVNLRVG 538
L L L N++ + G
Sbjct: 174 LDTLLLQENSLYTIPKG 190
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 247 LRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE 306
L + HN+ S+P + P AL +L +++NR+ +L + L+ + L+GN L T+
Sbjct: 82 LDLSHNQLQSLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 307 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGT 366
G K+ L+L N+L +L + G NGL + L L N L + F G+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPA-----GLLNGLENLDTLLLQENSLYTIPKGFF-GS 194
Query: 367 HITIFSFFQ 375
H+ F+F
Sbjct: 195 HLLPFAFLH 203
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 5/167 (2%)
Query: 405 LNVRDNQITTLS-SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
L++ +N + T S ++ + Y LT+L+L L +L+ +P L L+LS N L SL
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHN-QLQSL 92
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
P+ G L L VLD++ L S+P L L+ L L N L +P + L
Sbjct: 93 PLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
L L+NN + L G L GL ++ L L N L T +F + P
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 63/146 (43%), Gaps = 1/146 (0%)
Query: 371 FSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDL 430
+ + +L L+L+ L L+ G L L++ NQ+ +L LT LD+
Sbjct: 48 LATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107
Query: 431 SHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQY 490
S N L L A + L L L N L +LP G P KLE L LA L +P
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNQLTELPAG 166
Query: 491 QFDELLNLKYLCLAHNHLTEIPEMMF 516
+ L NL L L N L IP+ F
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
L LDLS NQ++++ + + L L + NR TS+P +L G L+ L + N +
Sbjct: 79 LGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRL 326
TL LE++ L N+LT + G NGL + L L N L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%)
Query: 217 LVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
L L +LD+S N++ ++ G L+G L EL + N ++P L L LS+A N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFN 311
++ L A L+ ++L+ N L TI G F
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
GL L+ L L N++K + G+L L +L + +N+ T +P+ LNG L L +
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGN 300
N + T+ F L L GN
Sbjct: 180 QENSLYTI-PKGFFGSHLLPFAFLHGN 205
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 39/95 (41%)
Query: 599 LKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXID 658
L L ++FN+ P + GL LQE+ L N+LKT+ P+L K +
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 659 AISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL 693
+ L + L N L +P+ F + L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLS 461
L LN+ ++T L +L LDLSHN L+ L P +P L L++S N L+
Sbjct: 57 LTQLNLDRCELTKLQVDG-TLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFN-RLT 113
Query: 462 SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN 521
SLP+G L +L+ L L LK++P L+ L LA+N LTE+P + L N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 522 LTYLDLSNNNIVNLRVG 538
L L L N++ + G
Sbjct: 174 LDTLLLQENSLYTIPKG 190
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 247 LRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE 306
L + HN+ S+P + P AL +L +++NR+ +L + L+ + L+GN L T+
Sbjct: 82 LDLSHNQLQSLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 307 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGT 366
G K+ L+L N+L +L + G NGL + L L N L + F G+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPA-----GLLNGLENLDTLLLQENSLYTIPKGFF-GS 194
Query: 367 HITIFSFFQ 375
H+ F+F
Sbjct: 195 HLLPFAFLH 203
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 5/167 (2%)
Query: 405 LNVRDNQITTLS-SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
L++ +N + T S ++ + Y LT+L+L L +L+ +P L L+LS N L SL
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHN-QLQSL 92
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
P+ G L L VLD++ L S+P L L+ L L N L +P + L
Sbjct: 93 PLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
L L+NN + L G L GL ++ L L N L T +F + P
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 63/146 (43%), Gaps = 1/146 (0%)
Query: 371 FSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDL 430
+ + +L L+L+ L L+ G L L++ NQ+ +L LT LD+
Sbjct: 48 LATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107
Query: 431 SHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQY 490
S N L L A + L L L N L +LP G P KLE L LA L +P
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNQLTELPAG 166
Query: 491 QFDELLNLKYLCLAHNHLTEIPEMMF 516
+ L NL L L N L IP+ F
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
L LDLS NQ++++ + + L L + NR TS+P +L G L+ L + N +
Sbjct: 79 LGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRL 326
TL LE++ L N+LT + G NGL + L L N L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%)
Query: 217 LVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
L L +LD+S N++ ++ G L+G L EL + N ++P L L LS+A N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFN 311
++ L A L+ ++L+ N L TI G F
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
GL L+ L L N++K + G+L L +L + +N+ T +P+ LNG L L +
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGN 300
N + T+ F L L GN
Sbjct: 180 QENSLYTI-PKGFFGSHLLPFAFLHGN 205
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 39/95 (41%)
Query: 599 LKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXID 658
L L ++FN+ P + GL LQE+ L N+LKT+ P+L K +
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 659 AISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL 693
+ L + L N L +P+ F + L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 9/134 (6%)
Query: 222 ILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTL 281
++ S+ +K + +GI + ++ EL +D N+FT +P L+ + L ++ ++ NRI TL
Sbjct: 14 VVRCSNKGLKVLPKGIPR---DVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTL 69
Query: 282 KADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG 341
SF + L +IL NRL I F+GL + +L+L N ++ GAFN
Sbjct: 70 SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-----VVPEGAFND 124
Query: 342 LAKIHILNLGYNRL 355
L+ + L +G N L
Sbjct: 125 LSALSHLAIGANPL 138
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 397 GLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSR 456
G+ + L + NQ T + NYK LT +DLS+N + L +F+N+ LL L LS
Sbjct: 28 GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87
Query: 457 NAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHL 508
N L +P FD LK L +L L + +P+ F++L L +L + N L
Sbjct: 88 N-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 24/114 (21%)
Query: 213 EFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILS 272
E +L ++DLS+N+I + LL L + +NR IP + +G ++LR+LS
Sbjct: 49 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108
Query: 273 MAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRL 326
L GN ++ + GAFN L+ + L +G N L
Sbjct: 109 ------------------------LHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXX 654
I + L L N+F PKEL +L IDLSNN++ T+ + + + +L
Sbjct: 29 IPRDVTELYLDGNQFTLVPKELS-NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87
Query: 655 XXIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
+ I F L++++L N + +PE FN
Sbjct: 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN 123
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL 535
V+ + GLK +P+ ++ L L N T +P+ + N +LT +DLSNN I L
Sbjct: 14 VVRCSNKGLKVLPKGIPRDVTELY---LDGNQFTLVPKEL-SNYKHLTLIDLSNNRISTL 69
Query: 536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFN 565
S + + L LS+N+L F+
Sbjct: 70 SNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 144/345 (41%), Gaps = 43/345 (12%)
Query: 204 SLNPIFSTSE--FHGLVNLRILDLSDNQIK-AIEEGILKGCDNLLELRMDHNRFTSIPSV 260
SLN I +E F L +L+ L + I +G +L+ L++D+N+F + +
Sbjct: 38 SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG 97
Query: 261 SLNGPRALRILSMAYNRI--GTLKADSFLSQRWLERIILRGNRLTTIEGGAFN-GLAKIH 317
+ NG L +L++ + L + F LE ++LR N + I+ +F + + H
Sbjct: 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157
Query: 318 ILNLGYNRLNKLNSD---TFQGGAFN-------GLAKIHILNLGYNRLNKLNSDTFQGTH 367
+L+L +N++ + + FQG F L ++ LG+ + + F+ T
Sbjct: 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC----GNPFKNTS 213
Query: 368 ITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTK 427
IT +LDL+GN G ++++ T + S L+
Sbjct: 214 IT------------TLDLSGN--------GFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253
Query: 428 LDLSHNNLKELEPTAFTNVPT--LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
H N K+ + F + + +LS+ + + +L F LE L LA +
Sbjct: 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSK-SKIFALLKSVFSHFTDLEQLTLAQNEIN 312
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
I F L +LK L L N L +P+ +F L +L + L N
Sbjct: 313 KIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 357
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 140/359 (38%), Gaps = 53/359 (14%)
Query: 343 AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTL 402
A ++ ++L N + +LN T FS QD Q LK +E
Sbjct: 30 AHVNYVDLSLNSIAELNE--------TSFSRLQDLQFLK----------------VEQQT 65
Query: 403 DNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSR-NAHLS 461
L +R+N LSS L L L +N +LE AF + L L L++ N +
Sbjct: 66 PGLVIRNNTFRGLSS-------LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA 118
Query: 462 SLPVGGFDPLKKLEVLDLAATGLKSI-PQYQFDELLNLKYLCLAHNHLTEIPEMMFKN-- 518
L F PL LE+L L +K I P F + L L N + I E N
Sbjct: 119 VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178
Query: 519 -----LLNLTYLDLSNNNIVNL---RVGSLYGLPSMKRLDLSFNKLT-TFKGDYFNTKSK 569
LL L+ + L + N L + G+ + S+ LDLS N + +F+ +
Sbjct: 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238
Query: 570 PNTSSXXXXXXXXXXXTYLF-----PSSFTIH----SKLKTLKLAFNKFNYFPKELILGL 620
S ++ P +FT S +KT L+ +K K +
Sbjct: 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF 298
Query: 621 SYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFN 679
+ L+++ L+ N++ IDD + L L++ + ++ + F + LQ I L N
Sbjct: 299 TDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 357
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLS 461
L LN+ ++T L +L LDLSHN L+ L P +P L L++S N L+
Sbjct: 57 LTQLNLDRCELTKLQVDG-TLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFN-RLT 113
Query: 462 SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN 521
SLP+G L +L+ L L LK++P L+ L LA+N LTE+P + L N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLEN 173
Query: 522 LTYLDLSNNNIVNLRVG 538
L L L N++ + G
Sbjct: 174 LDTLLLQENSLYTIPKG 190
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 5/167 (2%)
Query: 405 LNVRDNQITTLS-SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
L++ +N + T S ++ + Y LT+L+L L +L+ +P L L+LS N L SL
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHN-QLQSL 92
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
P+ G L L VLD++ L S+P L L+ L L N L +P + L
Sbjct: 93 PLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
L L+NN++ L G L GL ++ L L N L T +F + P
Sbjct: 152 KLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 247 LRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE 306
L + HN+ S+P + P AL +L +++NR+ +L + L+ + L+GN L T+
Sbjct: 82 LDLSHNQLQSLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 307 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGT 366
G K+ L+L N L +L + G NGL + L L N L + F G+
Sbjct: 141 PGLLTPTPKLEKLSLANNDLTELPA-----GLLNGLENLDTLLLQENSLYTIPKGFF-GS 194
Query: 367 HITIFSFFQ 375
H+ F+F
Sbjct: 195 HLLPFAFLH 203
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 62/140 (44%), Gaps = 1/140 (0%)
Query: 377 FQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLK 436
+ +L L+L+ L L+ G L L++ NQ+ +L LT LD+S N L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 437 ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELL 496
L A + L L L N L +LP G P KLE L LA L +P + L
Sbjct: 114 SLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLE 172
Query: 497 NLKYLCLAHNHLTEIPEMMF 516
NL L L N L IP+ F
Sbjct: 173 NLDTLLLQENSLYTIPKGFF 192
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
L LDLS NQ++++ + + L L + NR TS+P +L G L+ L + N +
Sbjct: 79 LGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRL 326
TL LE++ L N LT + G NGL + L L N L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%)
Query: 217 LVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
L L +LD+S N++ ++ G L+G L EL + N ++P L L LS+A N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFN 311
+ L A L+ ++L+ N L TI G F
Sbjct: 159 DLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
GL L+ L L N++K + G+L L +L + +N T +P+ LNG L L +
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLL 179
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGN 300
N + T+ F L L GN
Sbjct: 180 QENSLYTIPK-GFFGSHLLPFAFLHGN 205
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 39/95 (41%)
Query: 599 LKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXID 658
L L ++FN+ P + GL LQE+ L N+LKT+ P+L K +
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
Query: 659 AISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL 693
+ L + L N L +P+ F + L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 55.8 bits (133), Expect = 9e-08, Method: Composition-based stats.
Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
L L N + +LEP F ++ L +LNL+ N L++LPVG FD L KL L L LKSI
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVN-QLTALPVGVFDKLTKLTHLALHINQLKSI 103
Query: 488 PQYQFDELLNLKYLCLAHN 506
P FD L +L ++ L +N
Sbjct: 104 PMGVFDNLKSLTHIYLFNN 122
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 440 PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLK 499
P +LHL +++ ++ L G FD L +L L+LA L ++P FD+L L
Sbjct: 35 PAGIPTTTQVLHLYINQ---ITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLT 91
Query: 500 YLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
+L L N L IP +F NL +LT++ L NN
Sbjct: 92 HLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 460 LSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNL 519
L+S+P G +VL L + + FD L L YL LA N LT +P +F L
Sbjct: 31 LASVPAG---IPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKL 87
Query: 520 LNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
LT+L L N + ++ +G L S+ + L FN
Sbjct: 88 TKLTHLALHINQLKSIPMGVFDNLKSLTHIYL-FN 121
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 506 NHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFK-GDYF 564
N +T++ +F +L LTYL+L+ N + L VG L + L L N+L + G +
Sbjct: 50 NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFD 109
Query: 565 NTKS 568
N KS
Sbjct: 110 NLKS 113
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 256 SIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAK 315
S+ SV P ++L + N+I L+ F S L + L N+LT + G F+ L K
Sbjct: 30 SLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 316 IHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILN 349
+ L L N+L + F L I++ N
Sbjct: 90 LTHLALHINQLKSIPMGVFDN--LKSLTHIYLFN 121
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 5/167 (2%)
Query: 405 LNVRDNQITTLS-SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
L++ +N + T S ++ + Y LT+L+L L +L+ +P L L+LS N L SL
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHN-QLQSL 92
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
P+ G L L VLD++ L S+P L L+ L L N L +P + L
Sbjct: 93 PLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
L L+NNN+ L G L GL ++ L L N L T +F + P
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 62/140 (44%), Gaps = 1/140 (0%)
Query: 377 FQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLK 436
+ +L L+L+ L L+ G L L++ NQ+ +L LT LD+S N L
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 437 ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELL 496
L A + L L L N L +LP G P KLE L LA L +P + L
Sbjct: 114 SLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
Query: 497 NLKYLCLAHNHLTEIPEMMF 516
NL L L N L IP+ F
Sbjct: 173 NLDTLLLQENSLYTIPKGFF 192
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 247 LRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE 306
L + HN+ S+P + P AL +L +++NR+ +L + L+ + L+GN L T+
Sbjct: 82 LDLSHNQLQSLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 307 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGT 366
G K+ L+L N L +L + G NGL + L L N L + F G+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPA-----GLLNGLENLDTLLLQENSLYTIPKGFF-GS 194
Query: 367 HITIFSFFQ 375
H+ F+F
Sbjct: 195 HLLPFAFLH 203
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
L LDLS NQ++++ + + L L + NR TS+P +L G L+ L + N +
Sbjct: 79 LGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRL 326
TL LE++ L N LT + G NGL + L L N L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 217 LVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
L L +LD+S N++ ++ G L+G L EL + N ++P L L LS+A N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAF 310
+ L A L+ ++L+ N L TI G F
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
GL L+ L L N++K + G+L L +L + +N T +P+ LNG L L +
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGN 300
N + T+ F L L GN
Sbjct: 180 QENSLYTI-PKGFFGSHLLPFAFLHGN 205
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 39/95 (41%)
Query: 599 LKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXID 658
L L ++FN+ P + GL LQE+ L N+LKT+ P+L K +
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 659 AISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL 693
+ L + L N L +P+ F + L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 5/167 (2%)
Query: 405 LNVRDNQITTLS-SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
L++ +N + T S ++ + Y LT+L+L L +L+ +P L L+LS N L SL
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHN-QLQSL 92
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
P+ G L L VLD++ L S+P L L+ L L N L +P + L
Sbjct: 93 PLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
L L+NNN+ L G L GL ++ L L N L T +F + P
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 62/140 (44%), Gaps = 1/140 (0%)
Query: 377 FQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLK 436
+ +L L+L+ L L+ G L L++ NQ+ +L LT LD+S N L
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 437 ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELL 496
L A + L L L N L +LP G P KLE L LA L +P + L
Sbjct: 114 SLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
Query: 497 NLKYLCLAHNHLTEIPEMMF 516
NL L L N L IP+ F
Sbjct: 173 NLDTLLLQENSLYTIPKGFF 192
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 247 LRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE 306
L + HN+ S+P + P AL +L +++NR+ +L + L+ + L+GN L T+
Sbjct: 82 LDLSHNQLQSLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 307 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGT 366
G K+ L+L N L +L + G NGL + L L N L + F G+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPA-----GLLNGLENLDTLLLQENSLYTIPKGFF-GS 194
Query: 367 HITIFSFFQ 375
H+ F+F
Sbjct: 195 HLLPFAFLH 203
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
L LDLS NQ++++ + + L L + NR TS+P +L G L+ L + N +
Sbjct: 79 LGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRL 326
TL LE++ L N LT + G NGL + L L N L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 217 LVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
L L +LD+S N++ ++ G L+G L EL + N ++P L L LS+A N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAF 310
+ L A L+ ++L+ N L TI G F
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 39/95 (41%)
Query: 599 LKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXID 658
L L ++FN+ P + GL LQE+ L N+LKT+ P+L K +
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 659 AISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL 693
+ L + L N L +P+ F + L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
GL L+ L L N++K + G+L L +L + +N T +P+ LNG L L +
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGN 300
N + T+ F L L GN
Sbjct: 180 QENSLYTIPK-GFFGSHLLPFAFLHGN 205
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 5/167 (2%)
Query: 405 LNVRDNQITTLS-SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
L++ +N + T S ++ + Y LT+L+L L +L+ +P L L+LS N L SL
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHN-QLQSL 92
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
P+ G L L VLD++ L S+P L L+ L L N L +P + L
Sbjct: 93 PLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
L L+NNN+ L G L GL ++ L L N L T +F + P
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 247 LRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE 306
L + HN+ S+P + P AL +L +++NR+ +L + L+ + L+GN L T+
Sbjct: 82 LDLSHNQLQSLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 307 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGT 366
G K+ L+L N L +L + G NGL + L L N L + F G+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPA-----GLLNGLENLDTLLLQENSLYTIPKGFF-GS 194
Query: 367 HITIFSFFQ 375
H+ F+F
Sbjct: 195 HLLPFAFLH 203
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 62/140 (44%), Gaps = 1/140 (0%)
Query: 377 FQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLK 436
+ +L L+L+ L L+ G L L++ NQ+ +L LT LD+S N L
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 437 ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELL 496
L A + L L L N L +LP G P KLE L LA L +P + L
Sbjct: 114 SLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
Query: 497 NLKYLCLAHNHLTEIPEMMF 516
NL L L N L IP+ F
Sbjct: 173 NLDTLLLQENSLYTIPKGFF 192
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
L LDLS NQ++++ + + L L + NR TS+P +L G L+ L + N +
Sbjct: 79 LGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRL 326
TL LE++ L N LT + G NGL + L L N L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 217 LVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
L L +LD+S N++ ++ G L+G L EL + N ++P L L LS+A N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAF 310
+ L A L+ ++L+ N L TI G F
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 39/95 (41%)
Query: 599 LKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXID 658
L L ++FN+ P + GL LQE+ L N+LKT+ P+L K +
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 659 AISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL 693
+ L + L N L +P+ F + L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
GL L+ L L N++K + G+L L +L + +N T +P+ LNG L L +
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGN 300
N + T+ F L L GN
Sbjct: 180 QENSLYTIPK-GFFGSHLLPFAFLHGN 205
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 5/167 (2%)
Query: 405 LNVRDNQITTLS-SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
L++ +N + T S ++ + Y LT+L+L L +L+ +P L L+LS N L SL
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHN-QLQSL 92
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
P+ G L L VLD++ L S+P L L+ L L N L +P + L
Sbjct: 93 PLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
L L+NNN+ L G L GL ++ L L N L T +F + P
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 247 LRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE 306
L + HN+ S+P + P AL +L +++NR+ +L + L+ + L+GN L T+
Sbjct: 82 LDLSHNQLQSLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 307 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGT 366
G K+ L+L N L +L + G NGL + L L N L + F G+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPA-----GLLNGLENLDTLLLQENSLYTIPKGFF-GS 194
Query: 367 HITIFSFFQ 375
H+ F+F
Sbjct: 195 HLLPFAFLH 203
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 62/140 (44%), Gaps = 1/140 (0%)
Query: 377 FQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLK 436
+ +L L+L+ L L+ G L L++ NQ+ +L LT LD+S N L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 437 ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELL 496
L A + L L L N L +LP G P KLE L LA L +P + L
Sbjct: 114 SLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
Query: 497 NLKYLCLAHNHLTEIPEMMF 516
NL L L N L IP+ F
Sbjct: 173 NLDTLLLQENSLYTIPKGFF 192
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
L LDLS NQ++++ + + L L + NR TS+P +L G L+ L + N +
Sbjct: 79 LGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRL 326
TL LE++ L N LT + G NGL + L L N L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%)
Query: 217 LVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
L L +LD+S N++ ++ G L+G L EL + N ++P L L LS+A N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFN 311
+ L A L+ ++L+ N L TI G F
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
GL L+ L L N++K + G+L L +L + +N T +P+ LNG L L +
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGN 300
N + T+ F L L GN
Sbjct: 180 QENSLYTI-PKGFFGSHLLPFAFLHGN 205
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 39/95 (41%)
Query: 599 LKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXID 658
L L ++FN+ P + GL LQE+ L N+LKT+ P+L K +
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 659 AISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL 693
+ L + L N L +P+ F + L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 5/167 (2%)
Query: 405 LNVRDNQITTLS-SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
L++ +N + T S ++ + Y LT+L+L L +L+ +P L L+LS N L SL
Sbjct: 37 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHN-QLQSL 93
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
P+ G L L VLD++ L S+P L L+ L L N L +P + L
Sbjct: 94 PLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 152
Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
L L+NNN+ L G L GL ++ L L N L T +F + P
Sbjct: 153 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 199
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 247 LRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE 306
L + HN+ S+P + P AL +L +++NR+ +L + L+ + L+GN L T+
Sbjct: 83 LDLSHNQLQSLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 141
Query: 307 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGT 366
G K+ L+L N L +L + G NGL + L L N L + F G+
Sbjct: 142 PGLLTPTPKLEKLSLANNNLTELPA-----GLLNGLENLDTLLLQENSLYTIPKGFF-GS 195
Query: 367 HITIFSFFQ 375
H+ F+F
Sbjct: 196 HLLPFAFLH 204
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 63/146 (43%), Gaps = 1/146 (0%)
Query: 371 FSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDL 430
+ + +L L+L+ L L+ G L L++ NQ+ +L LT LD+
Sbjct: 49 LATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 108
Query: 431 SHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQY 490
S N L L A + L L L N L +LP G P KLE L LA L +P
Sbjct: 109 SFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 167
Query: 491 QFDELLNLKYLCLAHNHLTEIPEMMF 516
+ L NL L L N L IP+ F
Sbjct: 168 LLNGLENLDTLLLQENSLYTIPKGFF 193
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
L LDLS NQ++++ + + L L + NR TS+P +L G L+ L + N +
Sbjct: 80 LGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 138
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRL 326
TL LE++ L N LT + G NGL + L L N L
Sbjct: 139 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 217 LVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
L L +LD+S N++ ++ G L+G L EL + N ++P L L LS+A N
Sbjct: 100 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 159
Query: 277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAF 310
+ L A L+ ++L+ N L TI G F
Sbjct: 160 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 193
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 39/95 (41%)
Query: 599 LKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXID 658
L L ++FN+ P + GL LQE+ L N+LKT+ P+L K +
Sbjct: 103 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 162
Query: 659 AISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL 693
+ L + L N L +P+ F + L
Sbjct: 163 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 197
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
GL L+ L L N++K + G+L L +L + +N T +P+ LNG L L +
Sbjct: 121 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 180
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGN 300
N + T+ F L L GN
Sbjct: 181 QENSLYTI-PKGFFGSHLLPFAFLHGN 206
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 5/154 (3%)
Query: 404 NLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSS 462
N+++ N + L S + N+ L LDLS ++ +E A+ + L +L L+ N + S
Sbjct: 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQS 94
Query: 463 LPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN--HLTEIPEMMFKNLL 520
G F L LE L T L S+ + +L+ LK L +AHN H ++P F NL
Sbjct: 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLT 153
Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
NL ++DLS N I + V L L +++LS +
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 3/164 (1%)
Query: 400 DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKEL-EPTAFTNVPTLLHLNLSRNA 458
++L +L++ N +S++ + + L LD H+ LK + E +AF ++ LL+L++S
Sbjct: 376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435
Query: 459 HLSSLPVGGFDPLKKLEVLDLAATGLK-SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK 517
G F L L L +A K + F NL +L L+ L +I +F
Sbjct: 436 TKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494
Query: 518 NLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKG 561
L L L++S+NN++ L L S+ LD SFN++ T KG
Sbjct: 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 114/503 (22%), Positives = 195/503 (38%), Gaps = 113/503 (22%)
Query: 163 DIP--IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNL 220
DIP + +D S N L+ L FS + LQ L L+ +HGL +L
Sbjct: 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSE-LQWLDLSRCEI-----ETIEDKAWHGLHHL 82
Query: 221 RILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGT 280
L L+ N I++ G G +L L + S+ S + L+ L++A+N I +
Sbjct: 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142
Query: 281 LKADSF-----------LSQRWLERIILRG------------------NRLTTIEGGAFN 311
K ++ LS +++ I + N + I+ AF
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202
Query: 312 GLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHI--LNLGYNR--------------- 354
G+ K+H L L N NS LA +H+ L LG +
Sbjct: 203 GI-KLHELTLRGN----FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257
Query: 355 LNKLNSDTFQGTHITIFS----FFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDN 410
L + D F+ T+ FS F + ++ L G + LE +L++
Sbjct: 258 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC 317
Query: 411 QIT---------------TLSSSALNYKL-----LTKLDLSHNNLKELEPTAFTNVPT-- 448
Q+ T++ ++++K L+ LDLS N L +++++ T
Sbjct: 318 QLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377
Query: 449 LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQ-FDELLNLKYLCLAHNH 507
L HL+LS N + + F L++L+ LD + LK + ++ F L L YL +++ +
Sbjct: 378 LRHLDLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435
Query: 508 -----------LTEIPEM--------------MFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
LT + + +F N NLT+LDLS + + G
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495
Query: 543 LPSMKRLDLSFNKLTTFKGDYFN 565
L ++ L++S N L ++N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYN 518
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 190 TLQELRLADNLFGD-SLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELR 248
+L L++A N F D +L+ +F+ + NL LDLS Q++ I G+ L L
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANT-----TNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503
Query: 249 MDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKA 283
M HN + S N +L L ++NRI T K
Sbjct: 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 122/302 (40%), Gaps = 46/302 (15%)
Query: 85 MQIFSSSVSSEPCDTMIDDFPYPCRCKKMSESQLAMDC-DNVAFPNGEYPTLPYGLNLVT 143
++IF S+ CD ID+F S+ + C NV+ + ++ Y L V
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLT-YTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LEDVP 304
Query: 144 FSQRWVGHQILPMQI--FSSSDIPIRR-----------------------LDFSGNALRR 178
+W I+ Q+ F + D+P + LD S NAL
Sbjct: 305 KHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSF 364
Query: 179 LSDKLFSP-HRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEE-G 236
+S ++L+ L L+ N I ++ F GL L+ LD + +K + E
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFN------GAIIMSANFMGLEELQHLDFQHSTLKRVTEFS 418
Query: 237 ILKGCDNLLELRMDH-NRFTSIPSVSLNGPRALRILSMAYNRI--GTLKADSFLSQRWLE 293
+ LL L + + N + L G +L L MA N TL ++ F + L
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTL-SNVFANTTNLT 476
Query: 294 RIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYN 353
+ L +L I G F+ L ++ +LN+ +N L L+S +N L + L+ +N
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS-----SHYNQLYSLSTLDCSFN 531
Query: 354 RL 355
R+
Sbjct: 532 RI 533
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 94/413 (22%), Positives = 171/413 (41%), Gaps = 64/413 (15%)
Query: 265 PRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
P + + + +++N + LK+ SF + L+ + L + TIE A++GL + L L N
Sbjct: 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90
Query: 325 RLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLD 384
+ +F G+F+GL + L +L L S G IT LK L+
Sbjct: 91 PI-----QSFSPGSFSGLTSLENLVAVETKLASLESFPI-GQLIT----------LKKLN 134
Query: 385 LNGNFLINLESTGLEDTLDNLNVRD---NQITTLSSSALNY-----KLLTKLDLSHNNLK 436
+ NF+ + + L NL D N I T++ + L + ++ LD+S N +
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194
Query: 437 ELEPTAFTNVPTLLHLNLSRN----------------AHLSSLPVGGFDPLKKLEVLDLA 480
++ AF + L L L N H+ L +G F + LE+ + +
Sbjct: 195 FIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253
Query: 481 -ATGLKSIPQYQF---------DELLNLKYLCLAHNHLTEIPEMMFKNLLNL-TYLDLSN 529
GL + +F D++ +K+ CLA+ + + K L ++ + +
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDI--VKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQS 311
Query: 530 NNIVNLRVGSL--YGLPSMKRLDLSFNKLT-TFKGDYFNTKSKPNTSSXXXXXXXXXXXT 586
+I+ ++ LP +K L L+ NK + +FK + S + S +
Sbjct: 312 LSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYS 371
Query: 587 YLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDY 639
L +S L+ L L+FN +GL LQ +D ++ LK + ++
Sbjct: 372 DLGTNS------LRHLDLSFNGAIIMSANF-MGLEELQHLDFQHSTLKRVTEF 417
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 5/154 (3%)
Query: 404 NLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSS 462
N+++ N + L S + N+ L LDLS ++ +E A+ + L +L L+ N + S
Sbjct: 31 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQS 89
Query: 463 LPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN--HLTEIPEMMFKNLL 520
G F L LE L T L S+ + +L+ LK L +AHN H ++P F NL
Sbjct: 90 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLT 148
Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
NL ++DLS N I + V L L +++LS +
Sbjct: 149 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 182
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 3/164 (1%)
Query: 400 DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKEL-EPTAFTNVPTLLHLNLSRNA 458
++L +L++ N +S++ + + L LD H+ LK + E +AF ++ LL+L++S
Sbjct: 371 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 430
Query: 459 HLSSLPVGGFDPLKKLEVLDLAATGLK-SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK 517
G F L L L +A K + F NL +L L+ L +I +F
Sbjct: 431 TKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 489
Query: 518 NLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKG 561
L L L++S+NN++ L L S+ LD SFN++ T KG
Sbjct: 490 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 533
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 114/503 (22%), Positives = 195/503 (38%), Gaps = 113/503 (22%)
Query: 163 DIP--IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNL 220
DIP + +D S N L+ L FS + LQ L L+ +HGL +L
Sbjct: 24 DIPSSTKNIDLSFNPLKILKSYSFSNFSE-LQWLDLSRCEI-----ETIEDKAWHGLHHL 77
Query: 221 RILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGT 280
L L+ N I++ G G +L L + S+ S + L+ L++A+N I +
Sbjct: 78 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 137
Query: 281 LKADSF-----------LSQRWLERIILRG------------------NRLTTIEGGAFN 311
K ++ LS +++ I + N + I+ AF
Sbjct: 138 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 197
Query: 312 GLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHI--LNLGYNR--------------- 354
G+ K+H L L N NS LA +H+ L LG +
Sbjct: 198 GI-KLHELTLRGN----FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 252
Query: 355 LNKLNSDTFQGTHITIFS----FFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDN 410
L + D F+ T+ FS F + ++ L G + LE +L++
Sbjct: 253 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC 312
Query: 411 QIT---------------TLSSSALNYKL-----LTKLDLSHNNLKELEPTAFTNVPT-- 448
Q+ T++ ++++K L+ LDLS N L +++++ T
Sbjct: 313 QLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 372
Query: 449 LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQ-FDELLNLKYLCLAHNH 507
L HL+LS N + + F L++L+ LD + LK + ++ F L L YL +++ +
Sbjct: 373 LRHLDLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 430
Query: 508 -----------LTEIPEM--------------MFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
LT + + +F N NLT+LDLS + + G
Sbjct: 431 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 490
Query: 543 LPSMKRLDLSFNKLTTFKGDYFN 565
L ++ L++S N L ++N
Sbjct: 491 LHRLQLLNMSHNNLLFLDSSHYN 513
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 190 TLQELRLADNLFGD-SLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELR 248
+L L++A N F D +L+ +F+ + NL LDLS Q++ I G+ L L
Sbjct: 444 SLNTLKMAGNSFKDNTLSNVFANT-----TNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 498
Query: 249 MDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKA 283
M HN + S N +L L ++NRI T K
Sbjct: 499 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 533
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 123/302 (40%), Gaps = 46/302 (15%)
Query: 85 MQIFSSSVSSEPCDTMIDDFPYPCRCKKMSESQLAMDC-DNVAFPNGEYPTLPYGLNLVT 143
++IF S+ CD ID+F S+ + C NV+ + ++ Y L V
Sbjct: 242 LEIFEPSIMEGLCDVTIDEFRLT-YTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LEDVP 299
Query: 144 FSQRWVGHQILPMQI--FSSSDIPIRR-----------------------LDFSGNALRR 178
+W I+ Q+ F + D+P + LD S NAL
Sbjct: 300 KHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSF 359
Query: 179 LSDKLFSP-HRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEE-G 236
+S ++L+ L L+ N I ++ F GL L+ LD + +K + E
Sbjct: 360 SGCCSYSDLGTNSLRHLDLSFN------GAIIMSANFMGLEELQHLDFQHSTLKRVTEFS 413
Query: 237 ILKGCDNLLELRMDH-NRFTSIPSVSLNGPRALRILSMAYN--RIGTLKADSFLSQRWLE 293
+ LL L + + N + L G +L L MA N + TL ++ F + L
Sbjct: 414 AFLSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTL-SNVFANTTNLT 471
Query: 294 RIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYN 353
+ L +L I G F+ L ++ +LN+ +N L L+S +N L + L+ +N
Sbjct: 472 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS-----SHYNQLYSLSTLDCSFN 526
Query: 354 RL 355
R+
Sbjct: 527 RI 528
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 94/413 (22%), Positives = 171/413 (41%), Gaps = 64/413 (15%)
Query: 265 PRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
P + + + +++N + LK+ SF + L+ + L + TIE A++GL + L L N
Sbjct: 26 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 85
Query: 325 RLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLD 384
+ +F G+F+GL + L +L L S G IT LK L+
Sbjct: 86 PI-----QSFSPGSFSGLTSLENLVAVETKLASLESFPI-GQLIT----------LKKLN 129
Query: 385 LNGNFLINLESTGLEDTLDNLNVRD---NQITTLSSSALNY-----KLLTKLDLSHNNLK 436
+ NF+ + + L NL D N I T++ + L + ++ LD+S N +
Sbjct: 130 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 189
Query: 437 ELEPTAFTNVPTLLHLNLSRN----------------AHLSSLPVGGFDPLKKLEVLDLA 480
++ AF + L L L N H+ L +G F + LE+ + +
Sbjct: 190 FIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 248
Query: 481 -ATGLKSIPQYQF---------DELLNLKYLCLAHNHLTEIPEMMFKNLLNL-TYLDLSN 529
GL + +F D++ +K+ CLA+ + + K L ++ + +
Sbjct: 249 IMEGLCDVTIDEFRLTYTNDFSDDI--VKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQS 306
Query: 530 NNIVNLRVGSL--YGLPSMKRLDLSFNKLT-TFKGDYFNTKSKPNTSSXXXXXXXXXXXT 586
+I+ ++ LP +K L L+ NK + +FK + S + S +
Sbjct: 307 LSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYS 366
Query: 587 YLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDY 639
L +S L+ L L+FN +GL LQ +D ++ LK + ++
Sbjct: 367 DLGTNS------LRHLDLSFNGAIIMSANF-MGLEELQHLDFQHSTLKRVTEF 412
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 404 NLNVRDNQITTLSS-SALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSS 462
NL++ N + L S S ++ L LDLS ++ +E A+ ++ L L L+ N + S
Sbjct: 33 NLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQS 91
Query: 463 LPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT--EIPEMMFKNLL 520
L +G F L L+ L T L S+ + L LK L +AHN + ++PE F NL
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLT 150
Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSM 546
NL +LDLS+N I ++ L L M
Sbjct: 151 NLEHLDLSSNKIQSIYCTDLRVLHQM 176
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 103/258 (39%), Gaps = 47/258 (18%)
Query: 254 FTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGL 313
F IP N P + + L +++N + L + SF S L+ + L + TIE GA+ L
Sbjct: 20 FYKIPD---NLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 76
Query: 314 AKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSF 373
+ + L L N + L GAF+GL+ +
Sbjct: 77 SHLSTLILTGNPIQSL-----ALGAFSGLSSL---------------------------- 103
Query: 374 FQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITT--LSSSALNYKLLTKLDLS 431
QKL +++ N L N G TL LNV N I + L N L LDLS
Sbjct: 104 ----QKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 158
Query: 432 HNNLKELEPT---AFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP 488
N ++ + T +P L ++ + G F ++ L+ L L LKS+P
Sbjct: 159 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVP 217
Query: 489 QYQFDELLNLKYLCLAHN 506
FD L +L+ + L N
Sbjct: 218 DGIFDRLTSLQKIWLHTN 235
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 37/203 (18%)
Query: 477 LDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR 536
LDL+ L+ + Y F L+ L L+ + I + +++L +L+ L L+ N I +L
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 537 VGSLYGLPSMKRL---DLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSF 593
+G+ GL S+++L + + L F + T + N + ++ P F
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA-------HNLIQSFKLPEYF 146
Query: 594 TIHSKLKTLKLAFNKFNYF-----------------------PKELILGLSY----LQEI 626
+ + L+ L L+ NK P I ++ L+E+
Sbjct: 147 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKEL 206
Query: 627 DLSNNQLKTIDDYDYGYLPRLRK 649
L NQLK++ D + L L+K
Sbjct: 207 ALDTNQLKSVPDGIFDRLTSLQK 229
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 204 SLNPI--FSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS 261
S NP+ + F L++LDLS +I+ IE+G + +L L + N S+ +
Sbjct: 37 SWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 96
Query: 262 LNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE-GGAFNGLAKIHILN 320
+G +L+ L + +L+ + L+ + + N + + + F+ L + L+
Sbjct: 97 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 321 LGYNRLNKL 329
L N++ +
Sbjct: 157 LSSNKIQSI 165
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDA 659
K L L++N + LQ +DLS +++TI+D Y L L I +
Sbjct: 32 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 660 ISETCFFNSSQLQ---IINLSFNRLEKLP 685
++ F S LQ + + LE P
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFP 120
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 404 NLNVRDNQITTLSS-SALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSS 462
NL++ N + L S S ++ L LDLS ++ +E A+ ++ L L L+ N + S
Sbjct: 34 NLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQS 92
Query: 463 LPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT--EIPEMMFKNLL 520
L +G F L L+ L T L S+ + L LK L +AHN + ++PE F NL
Sbjct: 93 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLT 151
Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSM 546
NL +LDLS+N I ++ L L M
Sbjct: 152 NLEHLDLSSNKIQSIYCTDLRVLHQM 177
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 103/258 (39%), Gaps = 47/258 (18%)
Query: 254 FTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGL 313
F IP N P + + L +++N + L + SF S L+ + L + TIE GA+ L
Sbjct: 21 FYKIPD---NLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 77
Query: 314 AKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSF 373
+ + L L N + L GAF+GL+ +
Sbjct: 78 SHLSTLILTGNPIQSL-----ALGAFSGLSSL---------------------------- 104
Query: 374 FQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITT--LSSSALNYKLLTKLDLS 431
QKL +++ N L N G TL LNV N I + L N L LDLS
Sbjct: 105 ----QKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 159
Query: 432 HNNLKELEPT---AFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP 488
N ++ + T +P L ++ + G F ++ L+ L L LKS+P
Sbjct: 160 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVP 218
Query: 489 QYQFDELLNLKYLCLAHN 506
FD L +L+ + L N
Sbjct: 219 DGIFDRLTSLQKIWLHTN 236
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 37/203 (18%)
Query: 477 LDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR 536
LDL+ L+ + Y F L+ L L+ + I + +++L +L+ L L+ N I +L
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 537 VGSLYGLPSMKRL---DLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSF 593
+G+ GL S+++L + + L F + T + N + ++ P F
Sbjct: 95 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA-------HNLIQSFKLPEYF 147
Query: 594 TIHSKLKTLKLAFNKFNYF-----------------------PKELILGLSY----LQEI 626
+ + L+ L L+ NK P I ++ L+E+
Sbjct: 148 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKEL 207
Query: 627 DLSNNQLKTIDDYDYGYLPRLRK 649
L NQLK++ D + L L+K
Sbjct: 208 ALDTNQLKSVPDGIFDRLTSLQK 230
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 204 SLNPI--FSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS 261
S NP+ + F L++LDLS +I+ IE+G + +L L + N S+ +
Sbjct: 38 SWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 97
Query: 262 LNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE-GGAFNGLAKIHILN 320
+G +L+ L + +L+ + L+ + + N + + + F+ L + L+
Sbjct: 98 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 321 LGYNRLNKL 329
L N++ +
Sbjct: 158 LSSNKIQSI 166
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDA 659
K L L++N + LQ +DLS +++TI+D Y L L I +
Sbjct: 33 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 660 ISETCFFNSSQLQ---IINLSFNRLEKLP 685
++ F S LQ + + LE P
Sbjct: 93 LALGAFSGLSSLQKLVAVETNLASLENFP 121
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 242 DNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNR 301
+ + E+R++ N IP + + + LR + ++ N+I L D+F R L ++L GN+
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 302 LTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSD 361
+T + F GL + +L L N++N L D FQ L +++L+L N+L +
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQ-----DLHNLNLLSLYDNKLQTIAKG 146
Query: 362 TF 363
TF
Sbjct: 147 TF 148
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 433 NNLKELEPTAFTNVPT-----LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
NN+ + T +PT + + L +N + +P G F P KKL +DL+ + +
Sbjct: 13 NNIVDCRGKGLTEIPTNLPETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISEL 71
Query: 488 PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK 547
F L +L L L N +TE+P+ +F+ L +L L L+ N I LRV + L ++
Sbjct: 72 APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLN 131
Query: 548 RLDLSFNKLTTFKGDYFN 565
L L NKL T F+
Sbjct: 132 LLSLYDNKLQTIAKGTFS 149
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 9/156 (5%)
Query: 169 LDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDN 228
+D G L + L +T+ E+RL N + F LR +DLS+N
Sbjct: 16 VDCRGKGLTEIPTNL----PETITEIRLEQNTIK-----VIPPGAFSPYKKLRRIDLSNN 66
Query: 229 QIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLS 288
QI + +G +L L + N+ T +P G +L++L + N+I L+ D+F
Sbjct: 67 QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQD 126
Query: 289 QRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
L + L N+L TI G F+ L I ++L N
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 3/152 (1%)
Query: 383 LDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELEPT 441
+D G L + T L +T+ + + N I + A + YK L ++DLS+N + EL P
Sbjct: 16 VDCRGKGLTEI-PTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD 74
Query: 442 AFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYL 501
AF + +L L L N ++ LP F+ L L++L L A + + F +L NL L
Sbjct: 75 AFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLL 133
Query: 502 CLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIV 533
L N L I + F L + + L+ N +
Sbjct: 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 254 FTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGL 313
T IP+ N P + + + N I + +F + L RI L N+++ + AF GL
Sbjct: 23 LTEIPT---NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79
Query: 314 AKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTH 367
++ L L N++ +L F+G L ++ N++N L D FQ H
Sbjct: 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN-----ANKINXLRVDAFQDLH 128
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 404 NLNVRDNQITTLSS-SALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSS 462
NL++ N + L S S ++ L LDLS ++ +E A+ ++ L L L+ N + S
Sbjct: 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQS 90
Query: 463 LPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT--EIPEMMFKNLL 520
L +G F L L+ L T L S+ + L LK L +AHN + ++PE F NL
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLT 149
Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSM 546
NL +LDLS+N I ++ L L M
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 103/258 (39%), Gaps = 47/258 (18%)
Query: 254 FTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGL 313
F IP N P + + L +++N + L + SF S L+ + L + TIE GA+ L
Sbjct: 19 FYKIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75
Query: 314 AKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSF 373
+ + L L N + L GAF+GL+ +
Sbjct: 76 SHLSTLILTGNPIQSL-----ALGAFSGLSSL---------------------------- 102
Query: 374 FQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITT--LSSSALNYKLLTKLDLS 431
QKL +++ N L N G TL LNV N I + L N L LDLS
Sbjct: 103 ----QKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 432 HNNLKELEPT---AFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP 488
N ++ + T +P L ++ + G F ++ L+ L L LKS+P
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVP 216
Query: 489 QYQFDELLNLKYLCLAHN 506
FD L +L+ + L N
Sbjct: 217 DGIFDRLTSLQKIWLHTN 234
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 37/203 (18%)
Query: 477 LDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR 536
LDL+ L+ + Y F L+ L L+ + I + +++L +L+ L L+ N I +L
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 537 VGSLYGLPSMKRL---DLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSF 593
+G+ GL S+++L + + L F + T + N + ++ P F
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA-------HNLIQSFKLPEYF 145
Query: 594 TIHSKLKTLKLAFNKFNYF-----------------------PKELILGLSY----LQEI 626
+ + L+ L L+ NK P I ++ L+E+
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKEL 205
Query: 627 DLSNNQLKTIDDYDYGYLPRLRK 649
L NQLK++ D + L L+K
Sbjct: 206 ALDTNQLKSVPDGIFDRLTSLQK 228
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 204 SLNPI--FSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS 261
S NP+ + F L++LDLS +I+ IE+G + +L L + N S+ +
Sbjct: 36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95
Query: 262 LNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE-GGAFNGLAKIHILN 320
+G +L+ L + +L+ + L+ + + N + + + F+ L + L+
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 321 LGYNRLNKL 329
L N++ +
Sbjct: 156 LSSNKIQSI 164
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDA 659
K L L+FN + LQ +DLS +++TI+D Y L L I +
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 660 ISETCFFNSSQLQ---IINLSFNRLEKLP 685
++ F S LQ + + LE P
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFP 119
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 404 NLNVRDNQITTLSS-SALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSS 462
NL++ N + L S S ++ L LDLS ++ +E A+ ++ L L L+ N + S
Sbjct: 33 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQS 91
Query: 463 LPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT--EIPEMMFKNLL 520
L +G F L L+ L T L S+ + L LK L +AHN + ++PE F NL
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLT 150
Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSM 546
NL +LDLS+N I ++ L L M
Sbjct: 151 NLEHLDLSSNKIQSIYCTDLRVLHQM 176
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 103/258 (39%), Gaps = 47/258 (18%)
Query: 254 FTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGL 313
F IP N P + + L +++N + L + SF S L+ + L + TIE GA+ L
Sbjct: 20 FYKIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 76
Query: 314 AKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSF 373
+ + L L N + L GAF+GL+ +
Sbjct: 77 SHLSTLILTGNPIQSL-----ALGAFSGLSSL---------------------------- 103
Query: 374 FQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITT--LSSSALNYKLLTKLDLS 431
QKL +++ N L N G TL LNV N I + L N L LDLS
Sbjct: 104 ----QKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 158
Query: 432 HNNLKELEPT---AFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP 488
N ++ + T +P L ++ + G F ++ L+ L L LKS+P
Sbjct: 159 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVP 217
Query: 489 QYQFDELLNLKYLCLAHN 506
FD L +L+ + L N
Sbjct: 218 DGIFDRLTSLQKIWLHTN 235
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 37/203 (18%)
Query: 477 LDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR 536
LDL+ L+ + Y F L+ L L+ + I + +++L +L+ L L+ N I +L
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 537 VGSLYGLPSMKRL---DLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSF 593
+G+ GL S+++L + + L F + T + N + ++ P F
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA-------HNLIQSFKLPEYF 146
Query: 594 TIHSKLKTLKLAFNKFNYF-----------------------PKELILGLSY----LQEI 626
+ + L+ L L+ NK P I ++ L+E+
Sbjct: 147 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKEL 206
Query: 627 DLSNNQLKTIDDYDYGYLPRLRK 649
L NQLK++ D + L L+K
Sbjct: 207 ALDTNQLKSVPDGIFDRLTSLQK 229
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 204 SLNPI--FSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS 261
S NP+ + F L++LDLS +I+ IE+G + +L L + N S+ +
Sbjct: 37 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 96
Query: 262 LNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE-GGAFNGLAKIHILN 320
+G +L+ L + +L+ + L+ + + N + + + F+ L + L+
Sbjct: 97 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 321 LGYNRLNKL 329
L N++ +
Sbjct: 157 LSSNKIQSI 165
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDA 659
K L L+FN + LQ +DLS +++TI+D Y L L I +
Sbjct: 32 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 660 ISETCFFNSSQLQ---IINLSFNRLEKLP 685
++ F S LQ + + LE P
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFP 120
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 242 DNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNR 301
+ + E+R++ N IP + + + LR + ++ N+I L D+F R L ++L GN+
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 302 LTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSD 361
+T + F GL + +L L N++N L D FQ L +++L+L N+L +
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ-----DLHNLNLLSLYDNKLQTIAKG 146
Query: 362 TF------QGTHITIFSFFQD 376
TF Q H+ F D
Sbjct: 147 TFSPLRAIQTMHLAQNPFICD 167
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 9/156 (5%)
Query: 169 LDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDN 228
+D G L + L +T+ E+RL N + F LR +DLS+N
Sbjct: 16 VDCRGKGLTEIPTNL----PETITEIRLEQNTIK-----VIPPGAFSPYKKLRRIDLSNN 66
Query: 229 QIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLS 288
QI + +G +L L + N+ T +P G +L++L + N+I L+ D+F
Sbjct: 67 QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD 126
Query: 289 QRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
L + L N+L TI G F+ L I ++L N
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 433 NNLKELEPTAFTNVPT-----LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
NN+ + T +PT + + L +N + +P G F P KKL +DL+ + +
Sbjct: 13 NNIVDCRGKGLTEIPTNLPETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISEL 71
Query: 488 PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK 547
F L +L L L N +TE+P+ +F+ L +L L L+ N I LRV + L ++
Sbjct: 72 APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131
Query: 548 RLDLSFNKLTTFKGDYFN 565
L L NKL T F+
Sbjct: 132 LLSLYDNKLQTIAKGTFS 149
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 3/152 (1%)
Query: 383 LDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELEPT 441
+D G L + T L +T+ + + N I + A + YK L ++DLS+N + EL P
Sbjct: 16 VDCRGKGLTEIP-TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD 74
Query: 442 AFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYL 501
AF + +L L L N ++ LP F+ L L++L L A + + F +L NL L
Sbjct: 75 AFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL 133
Query: 502 CLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIV 533
L N L I + F L + + L+ N +
Sbjct: 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 254 FTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGL 313
T IP+ N P + + + N I + +F + L RI L N+++ + AF GL
Sbjct: 23 LTEIPT---NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79
Query: 314 AKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTH 367
++ L L N++ +L F+G L ++ N++N L D FQ H
Sbjct: 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN-----ANKINCLRVDAFQDLH 128
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 404 NLNVRDNQITTLSS-SALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSS 462
NL++ N + L S S ++ L LDLS ++ +E A+ ++ L L L+ N + S
Sbjct: 34 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQS 92
Query: 463 LPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT--EIPEMMFKNLL 520
L +G F L L+ L T L S+ + L LK L +AHN + ++PE F NL
Sbjct: 93 LALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLT 151
Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSM 546
NL +LDLS+N I ++ L L M
Sbjct: 152 NLEHLDLSSNKIQSIYCTDLRVLHQM 177
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 103/258 (39%), Gaps = 47/258 (18%)
Query: 254 FTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGL 313
F IP N P + + L +++N + L + SF S L+ + L + TIE GA+ L
Sbjct: 21 FYKIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 77
Query: 314 AKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSF 373
+ + L L N + L GAF+GL+ +
Sbjct: 78 SHLSTLILTGNPIQSL-----ALGAFSGLSSL---------------------------- 104
Query: 374 FQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITT--LSSSALNYKLLTKLDLS 431
QKL +L+ N L N G TL LNV N I + L N L LDLS
Sbjct: 105 ----QKLVALETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 159
Query: 432 HNNLKELEPT---AFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP 488
N ++ + T +P L ++ + G F ++ L+ L L LKS+P
Sbjct: 160 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVP 218
Query: 489 QYQFDELLNLKYLCLAHN 506
FD L +L+ + L N
Sbjct: 219 DGIFDRLTSLQKIWLHTN 236
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 37/203 (18%)
Query: 477 LDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR 536
LDL+ L+ + Y F L+ L L+ + I + +++L +L+ L L+ N I +L
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 537 VGSLYGLPSMKR---LDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSF 593
+G+ GL S+++ L+ + L F + T + N + ++ P F
Sbjct: 95 LGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVA-------HNLIQSFKLPEYF 147
Query: 594 TIHSKLKTLKLAFNKFNYF-----------------------PKELILGLSY----LQEI 626
+ + L+ L L+ NK P I ++ L+E+
Sbjct: 148 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKEL 207
Query: 627 DLSNNQLKTIDDYDYGYLPRLRK 649
L NQLK++ D + L L+K
Sbjct: 208 ALDTNQLKSVPDGIFDRLTSLQK 230
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%)
Query: 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDA 659
K L L+FN + LQ +DLS +++TI+D Y L L I +
Sbjct: 33 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 660 ISETCFFNSSQLQ 672
++ F S LQ
Sbjct: 93 LALGAFSGLSSLQ 105
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 204 SLNPI--FSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS 261
S NP+ + F L++LDLS +I+ IE+G + +L L + N S+ +
Sbjct: 38 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 97
Query: 262 LNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE-GGAFNGLAKIHILN 320
+G +L+ L + +L+ + L+ + + N + + + F+ L + L+
Sbjct: 98 FSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 321 LGYNRLNKL 329
L N++ +
Sbjct: 158 LSSNKIQSI 166
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 114/436 (26%), Positives = 175/436 (40%), Gaps = 121/436 (27%)
Query: 187 HRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLE 246
H TL+EL +A NL P + F L NL LDLS N+I++I C +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEY----FSNLTNLEHLDLSSNKIQSIY------CT---D 168
Query: 247 LRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGN------ 300
LR+ H P L ++ N + ++ +F R L ++ LR N
Sbjct: 169 LRVLHQM-----------PLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNV 216
Query: 301 RLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHI--LNLGY------ 352
T I+G A GL ++H L LG R N+ N + F A GL + I L Y
Sbjct: 217 MKTCIQGLA--GL-EVHRLVLGEFR-NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272
Query: 353 ---NRLNKL-NSDTFQGTHITI-----FSFFQDFQ---------------KLKSL----- 383
+ N L N +F +TI FS+ +Q KLKSL
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332
Query: 384 ------------DLNGNFLINLESTGLE------------DTLDNLNVRDNQITTLSSSA 419
DL ++L GL +L L++ N + T+SS+
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392
Query: 420 LNYKLLTKLDLSHNNLKEL-EPTAFTNVPTLLHLNLSRN-------------AHLSSLPV 465
L + L LD H+NLK++ E + F ++ L++L++S + L L +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 466 GG-----------FDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM 514
G F L+ L LDL+ L+ + F+ L +L+ L +A N L +P+
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512
Query: 515 MFKNLLNLTYLDLSNN 530
+F L +L + L N
Sbjct: 513 IFDRLTSLQKIWLHTN 528
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 124/514 (24%), Positives = 200/514 (38%), Gaps = 107/514 (20%)
Query: 204 SLNPI--FSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS 261
S NP+ + F L++LDLS +I+ IE+G + +L L + N S+ +
Sbjct: 36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95
Query: 262 LNG------------------------PRALRILSMAYNRIGTLKADSFLSQRW-LERII 296
+G + L+ L++A+N I + K + S LE +
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 297 LRGNRLTT----------------------------IEGGAFNGLAKIHILNLGYNRLNK 328
L N++ + I+ GAF + ++H L L N
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLR----NN 210
Query: 329 LNSDTFQGGAFNGLA--KIHILNLGYNR----LNKLNSDTFQG-THITIFSF---FQDFQ 378
+S GLA ++H L LG R L K + +G ++TI F + D+
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270
Query: 379 KLKSLDLNGNFLINLESTGLEDT----------------LDNLNVRDNQITTLSSSALNY 422
+DL N L N+ S L L+ +N + Q T L
Sbjct: 271 LDDIIDL-FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT-----LKL 324
Query: 423 KLLTKLDLSHNNLKELEPTAFTNV--PTLLHLNLSRNAHLSSLPVGGFD-PLKKLEVLDL 479
K L +L + N AF+ V P+L L+LSRN D L+ LDL
Sbjct: 325 KSLKRLTFTSNK----GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM-MFKNLLNLTYLDLSNNNIVNLRVG 538
+ G+ ++ F L L++L H++L ++ E +F +L NL YLD+S+ + G
Sbjct: 381 SFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 539 SLYGLPSMKRLDLSFNKLT-TFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHS 597
GL S++ L ++ N F D F + L P++F S
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFT-----ELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 598 KLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN 631
L+ L +A N+ P + L+ LQ+I L N
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 105/503 (20%), Positives = 190/503 (37%), Gaps = 121/503 (24%)
Query: 268 LRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLN 327
L++L ++ I T++ ++ S L +IL GN + ++ GAF+GL+ + L L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 328 KLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNG 387
L + F G L + LN+ +N + + +F + L+ LDL+
Sbjct: 114 SL--ENFPIGHLKTLKE---LNVAHNLIQSFK----------LPEYFSNLTNLEHLDLSS 158
Query: 388 NFL--------------------------------------INLESTGLEDTLDNLNVRD 409
N + I L L + D+LNV
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218
Query: 410 NQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVP--TLLHLNLSRNAHLSSLPVGG 467
I L+ ++ +L + + NL++ + +A + T+ L+ + +
Sbjct: 219 TCIQGLAGLEVHRLVLGEFR-NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277
Query: 468 FDPLKKLEVLDLAATGLKSIPQYQFD------ELLNLKYLCLAHNHLTEIPEMMFK---- 517
F+ L + L + ++ + + ++ EL+N K+ L + + F
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337
Query: 518 -------NLLNLTYLDLSNNNIV--NLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTK- 567
+L +L +LDLS N + S +G S+K LDLSFN + T ++ +
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397
Query: 568 --------SKPNTSSXXXXXXXXXXXTYL----------FPSSFTIHSKLKTLKLAFNKF 609
S S YL F F S L+ LK+A N F
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 610 --NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFN 667
N+ P ++ L L +DLS QL + +S T F +
Sbjct: 458 QENFLP-DIFTELRNLTFLDLSQCQL------------------------EQLSPTAFNS 492
Query: 668 SSQLQIINLSFNRLEKLPERLFN 690
S LQ++N++ N+L+ +P+ +F+
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFD 515
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 477 LDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR 536
LDL+ L+ + Y F L+ L L+ + I + +++L +L+ L L+ N I +L
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 537 VGSLYGLPSMKRL 549
+G+ GL S+++L
Sbjct: 93 LGAFSGLSSLQKL 105
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDA 659
K L L+FN + LQ +DLS +++TI+D Y L L I +
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 660 ISETCFFNSSQLQ---IINLSFNRLEKLP 685
++ F S LQ + + LE P
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFP 119
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 20/225 (8%)
Query: 327 NKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDF--QKLKSLD 384
NKL S G F+ L ++ L+L N L +F+G DF LK LD
Sbjct: 38 NKLQS--LPHGVFDKLTQLTKLSLSSNGL------SFKGCCSQ-----SDFGTTSLKYLD 84
Query: 385 LNGNFLINLEST--GLEDTLDNLNVRDNQITTLS--SSALNYKLLTKLDLSHNNLKELEP 440
L+ N +I + S GLE L++L+ + + + +S S L+ + L LD+SH + +
Sbjct: 85 LSFNGVITMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143
Query: 441 TAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKY 500
F + +L L ++ N+ + F L+ L LDL+ L+ + F+ L +L+
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203
Query: 501 LCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS 545
L ++HN+ + +K L +L LD S N+I+ + L PS
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 93/245 (37%), Gaps = 54/245 (22%)
Query: 481 ATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIV--NLRVG 538
+ GL S+P L+ L N L +P +F L LT L LS+N +
Sbjct: 16 SKGLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72
Query: 539 SLYGLPSMKRLDLSFNKLTTFKGDYFNTK---------SKPNTSSXXXXXXXXXXXTYL- 588
S +G S+K LDLSFN + T ++ + S S YL
Sbjct: 73 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132
Query: 589 ---------FPSSFTIHSKLKTLKLAFNKF--NYFPKELILGLSYLQEIDLSNNQLKTID 637
F F S L+ LK+A N F N+ P ++ L L +DLS QL
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQL---- 187
Query: 638 DYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFN---RLEKLPERLFNTFLY 694
+ +S T F + S LQ++N+S N L+ P + N+
Sbjct: 188 --------------------EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227
Query: 695 TNYDM 699
+Y +
Sbjct: 228 LDYSL 232
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
+L+ L++A N F ++ P F L NL LDLS Q++ + +L L M
Sbjct: 151 SLEVLKMAGNSFQENFLPDI----FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK 282
HN F S+ + +L++L + N I T K
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 81/216 (37%), Gaps = 50/216 (23%)
Query: 168 RLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSD 227
RL+ N L+ L +F L +L L+ N G S S S+F G +L+ LDLS
Sbjct: 32 RLELESNKLQSLPHGVFDK-LTQLTKLSLSSN--GLSFKGCCSQSDF-GTTSLKYLDLSF 87
Query: 228 NQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFL 287
N + + L G + L L H+ + S+ FL
Sbjct: 88 NGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSV-----------------------FL 123
Query: 288 SQRWLERIILRGNRLTTIEGGAFNGLAKIHIL--------------------NLGYNRLN 327
S R L + + G FNGL+ + +L NL + L+
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 328 KLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTF 363
+ + AFN L+ + +LN+ +N L DTF
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL--DTF 217
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 47/131 (35%), Gaps = 25/131 (19%)
Query: 212 SEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRIL 271
S F L NL LD+S + GI G +L L+M N F
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--------------- 164
Query: 272 SMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNS 331
D F R L + L +L + AFN L+ + +LN+ +N L
Sbjct: 165 --------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-- 214
Query: 332 DTFQGGAFNGL 342
DTF N L
Sbjct: 215 DTFPYKCLNSL 225
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 153/366 (41%), Gaps = 59/366 (16%)
Query: 187 HRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLE 246
HR L E R NL F S GL NL IEE L D L+
Sbjct: 254 HRLVLGEFRNEGNL------EKFDKSALEGLCNL-----------TIEEFRLAYLDYYLD 296
Query: 247 LRMD-HNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI 305
+D N T++ S SL R+ +YN + LE + + + T
Sbjct: 297 GIIDLFNCLTNVSSFSLVSVTIERVKDFSYN----------FGWQHLELVNCKFGQFPT- 345
Query: 306 EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 365
L L +L + +GG N +++ + +L + L++ N +F+G
Sbjct: 346 ---------------LKLKSLKRLTFTSNKGG--NAFSEVDLPSLEFLDLSR-NGLSFKG 387
Query: 366 THITIFSFFQDFQ--KLKSLDLNGNFLINLEST--GLEDTLDNLNVRDNQITTLS--SSA 419
DF LK LDL+ N +I + S GLE L++L+ + + + +S S
Sbjct: 388 CCSQ-----SDFGTISLKYLDLSFNGVITMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVF 441
Query: 420 LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
L+ + L LD+SH + + F + +L L ++ N+ + F L+ L LDL
Sbjct: 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501
Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539
+ L+ + F+ L +L+ L ++HN+ + +K L +L LD S N+I+ +
Sbjct: 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561
Query: 540 LYGLPS 545
L PS
Sbjct: 562 LQHFPS 567
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 129/536 (24%), Positives = 210/536 (39%), Gaps = 123/536 (22%)
Query: 204 SLNPI--FSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS 261
S NP+ + F L++LDLS +I+ IE+G + +L L + N S+ +
Sbjct: 60 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119
Query: 262 LNG------------------------PRALRILSMAYNRIGTLKADSFLSQRW-LERII 296
+G + L+ L++A+N I + K + S LE +
Sbjct: 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179
Query: 297 LRGNRLTT----------------------------IEGGAFNGLAKIHILNLGYNRLNK 328
L N++ + I+ GAF + ++H L L N
Sbjct: 180 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLR----NN 234
Query: 329 LNSDTFQGGAFNGLA--KIHILNLGYNR----LNKLNSDTFQG-THITIFSFFQDFQKLK 381
+S GLA ++H L LG R L K + +G ++TI F +L
Sbjct: 235 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF-----RLA 289
Query: 382 SLD--LNG-----NFLINLESTGLEDT----------------LDNLNVRDNQITTLSSS 418
LD L+G N L N+ S L L+ +N + Q T
Sbjct: 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT---- 345
Query: 419 ALNYKLLTKLDLSHNNLKELEPTAFTNV--PTLLHLNLSRN--AHLSSLPVGGFDPLKKL 474
L K L +L + N AF+ V P+L L+LSRN + F + L
Sbjct: 346 -LKLKSLKRLTFTSNK----GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI-SL 399
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM-MFKNLLNLTYLDLSNNNIV 533
+ LDL+ G+ ++ F L L++L H++L ++ E +F +L NL YLD+S+ +
Sbjct: 400 KYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 458
Query: 534 NLRVGSLYGLPSMKRLDLSFNKLT-TFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSS 592
G GL S++ L ++ N F D F + L P++
Sbjct: 459 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-----ELRNLTFLDLSQCQLEQLSPTA 513
Query: 593 FTIHSKLKTLKLAFNKF---NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLP 645
F S L+ L ++ N F + FP + L+ LQ +D S N + T + + P
Sbjct: 514 FNSLSSLQVLNMSHNNFFSLDTFPYKC---LNSLQVLDYSLNHIMTSKKQELQHFP 566
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 117/543 (21%), Positives = 196/543 (36%), Gaps = 131/543 (24%)
Query: 254 FTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGL 313
F IP N P + + L +++N + L + SF S L+ + L + TIE GA+ L
Sbjct: 43 FYKIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 99
Query: 314 AKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHIL-----------NLGYNRLNKLNSDT 362
+ + L L N + L GAF+GL+ + L N L L
Sbjct: 100 SHLSTLILTGNPIQSL-----ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 154
Query: 363 FQGTHITIF---SFFQDFQKLKSLDLNGNFL----------------------------- 390
I F +F + L+ LDL+ N +
Sbjct: 155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 214
Query: 391 ---------INLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPT 441
I L L + D+LNV I L+ ++ +L + + NL++ + +
Sbjct: 215 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR-NEGNLEKFDKS 273
Query: 442 AFTNVP--TLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFD------ 493
A + T+ L+ + + F+ L + L + ++ + + ++
Sbjct: 274 ALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL 333
Query: 494 ELLNLKYLCLAHNHLTEIPEMMFK-----------NLLNLTYLDLSNNNIV--NLRVGSL 540
EL+N K+ L + + F +L +L +LDLS N + S
Sbjct: 334 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 393
Query: 541 YGLPSMKRLDLSFNKLTTFKGDYFNTK---------SKPNTSSXXXXXXXXXXXTYL--- 588
+G S+K LDLSFN + T ++ + S S YL
Sbjct: 394 FGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 453
Query: 589 -------FPSSFTIHSKLKTLKLAFNKF--NYFPKELILGLSYLQEIDLSNNQLKTIDDY 639
F F S L+ LK+A N F N+ P ++ L L +DLS QL
Sbjct: 454 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQL------ 506
Query: 640 DYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFN---RLEKLPERLFNTFLYTN 696
+ +S T F + S LQ++N+S N L+ P + N+ +
Sbjct: 507 ------------------EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548
Query: 697 YDM 699
Y +
Sbjct: 549 YSL 551
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 153/366 (41%), Gaps = 59/366 (16%)
Query: 187 HRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLE 246
HR L E R NL F S GL NL IEE L D L+
Sbjct: 230 HRLVLGEFRNEGNL------EKFDKSALEGLCNL-----------TIEEFRLAYLDYYLD 272
Query: 247 LRMD-HNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI 305
+D N T++ S SL R+ +YN + LE + + + T
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYN----------FGWQHLELVNCKFGQFPT- 321
Query: 306 EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 365
L L +L + +GG N +++ + +L + L++ N +F+G
Sbjct: 322 ---------------LKLKSLKRLTFTSNKGG--NAFSEVDLPSLEFLDLSR-NGLSFKG 363
Query: 366 THITIFSFFQDF--QKLKSLDLNGNFLINLEST--GLEDTLDNLNVRDNQITTLS--SSA 419
DF LK LDL+ N +I + S GLE L++L+ + + + +S S
Sbjct: 364 CCSQ-----SDFGTTSLKYLDLSFNGVITMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVF 417
Query: 420 LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
L+ + L LD+SH + + F + +L L ++ N+ + F L+ L LDL
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539
+ L+ + F+ L +L+ L ++HN+ + +K L +L LD S N+I+ +
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537
Query: 540 LYGLPS 545
L PS
Sbjct: 538 LQHFPS 543
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 127/531 (23%), Positives = 207/531 (38%), Gaps = 113/531 (21%)
Query: 204 SLNPI--FSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS 261
S NP+ + F L++LDLS +I+ IE+G + +L L + N S+ +
Sbjct: 36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95
Query: 262 LNG------------------------PRALRILSMAYNRIGTLKADSFLSQRW-LERII 296
+G + L+ L++A+N I + K + S LE +
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 297 LRGNRLTT----------------------------IEGGAFNGLAKIHILNLGYNRLNK 328
L N++ + I+ GAF + ++H L L N
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLR----NN 210
Query: 329 LNSDTFQGGAFNGLA--KIHILNLGYNR----LNKLNSDTFQG-THITIFSF---FQDFQ 378
+S GLA ++H L LG R L K + +G ++TI F + D+
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270
Query: 379 KLKSLDLNGNFLINLESTGLEDT----------------LDNLNVRDNQITTLSSSALNY 422
+DL N L N+ S L L+ +N + Q TL
Sbjct: 271 LDDIIDL-FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK-----L 324
Query: 423 KLLTKLDLSHNNLKELEPTAFTNV--PTLLHLNLSRNAHLSSLPVGGFD-PLKKLEVLDL 479
K L +L + N AF+ V P+L L+LSRN D L+ LDL
Sbjct: 325 KSLKRLTFTSNK----GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM-MFKNLLNLTYLDLSNNNIVNLRVG 538
+ G+ ++ F L L++L H++L ++ E +F +L NL YLD+S+ + G
Sbjct: 381 SFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 539 SLYGLPSMKRLDLSFNKLT-TFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHS 597
GL S++ L ++ N F D F + L P++F S
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFT-----ELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 598 KLKTLKLAFNKF---NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLP 645
L+ L ++ N F + FP + L+ LQ +D S N + T + + P
Sbjct: 495 SLQVLNMSHNNFFSLDTFPYKC---LNSLQVLDYSLNHIMTSKKQELQHFP 542
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 107/515 (20%), Positives = 190/515 (36%), Gaps = 124/515 (24%)
Query: 268 LRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLN 327
L++L ++ I T++ ++ S L +IL GN + ++ GAF+GL+ + L L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 328 KLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNG 387
L + F G L + LN+ +N + + +F + L+ LDL+
Sbjct: 114 SL--ENFPIGHLKTLKE---LNVAHNLIQSFK----------LPEYFSNLTNLEHLDLSS 158
Query: 388 NFL--------------------------------------INLESTGLEDTLDNLNVRD 409
N + I L L + D+LNV
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218
Query: 410 NQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVP--TLLHLNLSRNAHLSSLPVGG 467
I L+ ++ +L + + NL++ + +A + T+ L+ + +
Sbjct: 219 TCIQGLAGLEVHRLVLGEFR-NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277
Query: 468 FDPLKKLEVLDLAATGLKSIPQYQFD------ELLNLKYLCLAHNHLTEIPEMMFK---- 517
F+ L + L + ++ + + ++ EL+N K+ L + + F
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337
Query: 518 -------NLLNLTYLDLSNNNIV--NLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTK- 567
+L +L +LDLS N + S +G S+K LDLSFN + T ++ +
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397
Query: 568 --------SKPNTSSXXXXXXXXXXXTYL----------FPSSFTIHSKLKTLKLAFNKF 609
S S YL F F S L+ LK+A N F
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 610 --NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFN 667
N+ P ++ L L +DLS QL + +S T F +
Sbjct: 458 QENFLP-DIFTELRNLTFLDLSQCQL------------------------EQLSPTAFNS 492
Query: 668 SSQLQIINLSFN---RLEKLPERLFNTFLYTNYDM 699
S LQ++N+S N L+ P + N+ +Y +
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 477 LDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR 536
LDL+ L+ + Y F L+ L L+ + I + +++L +L+ L L+ N I +L
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 537 VGSLYGLPSMKRL 549
+G+ GL S+++L
Sbjct: 93 LGAFSGLSSLQKL 105
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDA 659
K L L+FN + LQ +DLS +++TI+D Y L L I +
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 660 ISETCFFNSSQLQ---IINLSFNRLEKLP 685
++ F S LQ + + LE P
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFP 119
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 115/267 (43%), Gaps = 27/267 (10%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
++ LDLS+N+I I L+ C NL L + N +I S + +L L ++YN +
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 280 TLKADSFLSQRWLERIILRGNRLTTI-EGGAFNGLAKIHILNLGYNRLNKLNSDTF---Q 335
L + F L + L GN T+ E F+ L K+ IL +G N DTF Q
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG-------NMDTFTKIQ 166
Query: 336 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES 395
F GL + L + + L + + Q + L++ + ++E
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226
Query: 396 TGLEDT-LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAF------TNVPT 448
L DT LD + ++++T +++L K + N+K + + F +
Sbjct: 227 LELRDTDLDTFHF--SELSTGETNSLIKK------FTFRNVKITDESLFQVMKLLNQISG 278
Query: 449 LLHLNLSRNAHLSSLPVGGFDPLKKLE 475
LL L SRN L S+P G FD L L+
Sbjct: 279 LLELEFSRN-QLKSVPDGIFDRLTSLQ 304
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 120/263 (45%), Gaps = 14/263 (5%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKL-LTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
+GL + + +L++ +N+IT +S+S L + L L L+ N + +E +F+++ +L HL+L
Sbjct: 48 SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQ-FDELLNLKYLCLAH-NHLTEIP 512
S N +LS+L F PL L L+L K++ + F L L+ L + + + T+I
Sbjct: 108 SYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166
Query: 513 EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT 572
F L L L++ +++ + SL + ++ L L + + + S
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS---- 222
Query: 573 SSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPK------ELILGLSYLQEI 626
S T+ F T + K F + +L+ +S L E+
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282
Query: 627 DLSNNQLKTIDDYDYGYLPRLRK 649
+ S NQLK++ D + L L+K
Sbjct: 283 EFSRNQLKSVPDGIFDRLTSLQK 305
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539
++ L SIP + + K L L++N +T I + +NL L L++N I + S
Sbjct: 39 SSGSLNSIPSGLTEAV---KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95
Query: 540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKL 599
L S++ LDLS+N L+ +F KP +S T S F+ +KL
Sbjct: 96 FSSLGSLEHLDLSYNYLSNLSSSWF----KPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151
Query: 600 KTLKLA-FNKFNYFPKELILGLSYLQEIDLSNNQLKTID 637
+ L++ + F ++ GL++L+E+++ + L++ +
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 440 PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLK 499
P+ T L L+ +R ++S+ L+ L L + G+ +I + F L +L+
Sbjct: 47 PSGLTEAVKSLDLSNNRITYISN---SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103
Query: 500 YLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
+L L++N+L+ + FK L +LT+L+L N L SL+
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS 146
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 623 LQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLE 682
++ +DLSNN++ I + D L+ I+ I E F + L+ ++LS+N L
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 683 KLPERLF 689
L F
Sbjct: 114 NLSSSWF 120
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
T +D S +L + T +PT + + ++ L G FD L +L LDL L
Sbjct: 20 TTVDCSGKSLASVP----TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 75
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
+P FD+L L L L N L IP F NL +LT++ L NN
Sbjct: 76 VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 25/125 (20%)
Query: 382 SLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPT 441
++D +G L ++ TG+ T L + DNQIT +LEP
Sbjct: 21 TVDCSGKSLASVP-TGIPTTTQVLYLYDNQIT-----------------------KLEPG 56
Query: 442 AFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYL 501
F + L L+L N L+ LP G FD L +L L L LKSIP+ FD L +L ++
Sbjct: 57 VFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 115
Query: 502 CLAHN 506
L +N
Sbjct: 116 WLLNN 120
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL 535
+D + L S+P + L L N +T++ +F L LT LDL NN + L
Sbjct: 21 TVDCSGKSLASVPT---GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 77
Query: 536 RVGSLYGLPSMKRLDLSFNKLTTF-KGDYFNTKS 568
G L + +L L+ N+L + +G + N KS
Sbjct: 78 PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKS 111
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)
Query: 169 LDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDN 228
+D SG +L + + + T Q L L DN L P F L L LDL +N
Sbjct: 22 VDCSGKSLASVPTGIPT----TTQVLYLYDNQI-TKLEP----GVFDRLTQLTRLDLDNN 72
Query: 229 QIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLS 288
Q+ + G+ L +L ++ N+ SIP + + ++L + + N +D
Sbjct: 73 QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYL 132
Query: 289 QRWLER 294
RW+ +
Sbjct: 133 SRWISQ 138
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 256 SIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAK 315
S+ SV P ++L + N+I L+ F L R+ L N+LT + G F+ L +
Sbjct: 28 SLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 316 IHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILN 349
+ L+L N+L + F L I +LN
Sbjct: 88 LTQLSLNDNQLKSIPRGAFDN--LKSLTHIWLLN 119
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 221 RILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGT 280
++L L DNQI +E G+ L L +D+N+ T +P+ + L LS+ N++ +
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 281 LKADSFLSQRWLERIILRGN 300
+ +F + + L I L N
Sbjct: 101 IPRGAFDNLKSLTHIWLLNN 120
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
T +D S +L + PT +L+L +R ++ L G FD L +L LDL L
Sbjct: 12 TTVDCSGKSLASV-PTGIPTTTQVLYLYDNR---ITKLEPGVFDRLTQLTRLDLDNNQLT 67
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
+P FD+L L L L N L IP F NL +LT++ L NN
Sbjct: 68 VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 9/126 (7%)
Query: 169 LDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDN 228
+D SG +L + + + T Q L L DN L P F L L LDL +N
Sbjct: 14 VDCSGKSLASVPTGIPT----TTQVLYLYDNRI-TKLEP----GVFDRLTQLTRLDLDNN 64
Query: 229 QIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLS 288
Q+ + G+ L +L ++ N+ SIP + + R+L + + N +D
Sbjct: 65 QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDILYL 124
Query: 289 QRWLER 294
RW+ +
Sbjct: 125 SRWISQ 130
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 256 SIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAK 315
S+ SV P ++L + NRI L+ F L R+ L N+LT + G F+ L +
Sbjct: 20 SLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 316 IHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILN 349
+ L+L N+L + F L I +LN
Sbjct: 80 LTQLSLNDNQLKSIPRGAFDN--LRSLTHIWLLN 111
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 221 RILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGT 280
++L L DN+I +E G+ L L +D+N+ T +P+ + L LS+ N++ +
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 281 LKADSFLSQRWLERIILRGN 300
+ +F + R L I L N
Sbjct: 93 IPRGAFDNLRSLTHIWLLNN 112
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL 535
+D + L S+P + L L N +T++ +F L LT LDL NN + L
Sbjct: 13 TVDCSGKSLASVPT---GIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
Query: 536 RVGSLYGLPSMKRLDLSFNKLTTF-KGDYFNTKS 568
G L + +L L+ N+L + +G + N +S
Sbjct: 70 PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRS 103
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 402 LDNLNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
L L++ +NQ+T L + + LT+L L+ N LK + AF N+ +L H+ L N
Sbjct: 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 127/313 (40%), Gaps = 34/313 (10%)
Query: 344 KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLD-LNGNFLINLESTGLEDTL 402
KI I+ +GYN L +T Q +KL L+ L L + G E L
Sbjct: 306 KIQIIYIGYNNLKTFPVETS----------LQKXKKLGXLECLYNQLEGKLPAFGSEIKL 355
Query: 403 DNLNVRDNQITTLSSSALNY-KLLTKLDLSHNNLKELEPTAF--TNVPTLLHLNLSRNAH 459
+LN+ NQIT + ++ + + + L +HN LK + P F +V ++ S N
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI-PNIFDAKSVSVXSAIDFSYN-E 413
Query: 460 LSSLPVGGFDPL-----KKLEV--LDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIP 512
+ S+ FDPL K + V ++L+ + P+ F L + L N LTEIP
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIP 473
Query: 513 EMM-------FKNLLNLTYLDLSNNNIVNLRVG-SLYGLPSMKRLDLSFNKLTTFKGDYF 564
+ FKN LT +DL N + L LP + +DLS+N + F
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL 533
Query: 565 NTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQ 624
N+ + +P T+ L L++ N +++ +S L
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVL- 592
Query: 625 EIDLSNNQLKTID 637
D+ +N +ID
Sbjct: 593 --DIKDNPNISID 603
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 101/251 (40%), Gaps = 22/251 (8%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSV-SLNGPRALRILS 272
F + L L+L+ NQI I + + L HN+ IP++ +
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAID 408
Query: 273 MAYNRIGTLKADSF-------LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR 325
+YN IG++ +F + I L N+++ F+ + + +NL N
Sbjct: 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNX 468
Query: 326 LNKL--NSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTH----ITIFSFFQDFQK 379
L ++ NS + F + ++L +N+L KL SD F+ T + I + F K
Sbjct: 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSK 527
Query: 380 LKSLDLNGNFLINLESTGLEDTLDNLNVRD-NQITTLSSSALNYKLLTKLDLSHNNLKEL 438
+ LN + L D N +R+ + TL S LT+L + N+++++
Sbjct: 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS------LTQLQIGSNDIRKV 581
Query: 439 EPTAFTNVPTL 449
N+ L
Sbjct: 582 NEKITPNISVL 592
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 592 SFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDD-YDYGYLPRLRKX 650
+F KL +L LA+N+ P ++ + ++N+LK I + +D +
Sbjct: 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAI 407
Query: 651 XXXXXXIDAISETCF-------FNSSQLQIINLSFNRLEKLPERLFNT 691
I ++ F F + INLS N++ K P+ LF+T
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 90/258 (34%), Gaps = 77/258 (29%)
Query: 429 DLSHNNLKELEPTAFTNVPTLLHL-------------NLSRNAHLSS------------L 463
DL +NLK+L N P L L N++ N +S
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADA 301
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQY------------------------QFDELLNLK 499
PVG +K++++ + LK+ P F + L
Sbjct: 302 PVG-----EKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLA 356
Query: 500 YLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL-RVGSLYGLPSMKRLDLSFNKLTT 558
L LA+N +TEIP + L ++N + + + + +D S+N++ +
Sbjct: 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEIGS 416
Query: 559 FKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL 618
G F+ L P+ F + ++ L+ N+ + FPKEL
Sbjct: 417 VDGKNFDP---------------------LDPTPFK-GINVSSINLSNNQISKFPKELFS 454
Query: 619 GLSYLQEIDLSNNQLKTI 636
S L I+L N L I
Sbjct: 455 TGSPLSSINLXGNXLTEI 472
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
T +D S +L + T +PT + + ++ L G FD L +L LDL L
Sbjct: 12 TTVDCSGKSLASVP----TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
+P FD+L L L L N L IP F NL +LT++ L NN
Sbjct: 68 VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 25/125 (20%)
Query: 382 SLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPT 441
++D +G L ++ TG+ T L + DNQIT +LEP
Sbjct: 13 TVDCSGKSLASVP-TGIPTTTQVLYLYDNQIT-----------------------KLEPG 48
Query: 442 AFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYL 501
F + L L+L N L+ LP G FD L +L L L LKSIP+ FD L +L ++
Sbjct: 49 VFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 107
Query: 502 CLAHN 506
L +N
Sbjct: 108 WLLNN 112
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)
Query: 169 LDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDN 228
+D SG +L + + + T Q L L DN L P F L L LDL +N
Sbjct: 14 VDCSGKSLASVPTGIPT----TTQVLYLYDNQI-TKLEP----GVFDRLTQLTRLDLDNN 64
Query: 229 QIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLS 288
Q+ + G+ L +L ++ N+ SIP + + ++L + + N +D
Sbjct: 65 QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYL 124
Query: 289 QRWLER 294
RW+ +
Sbjct: 125 SRWISQ 130
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 256 SIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAK 315
S+ SV P ++L + N+I L+ F L R+ L N+LT + G F+ L +
Sbjct: 20 SLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 316 IHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILN 349
+ L+L N+L + F L I +LN
Sbjct: 80 LTQLSLNDNQLKSIPRGAFDN--LKSLTHIWLLN 111
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL 535
+D + L S+P + L L N +T++ +F L LT LDL NN + L
Sbjct: 13 TVDCSGKSLASVPT---GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
Query: 536 RVGSLYGLPSMKRLDLSFNKLTTF-KGDYFNTKS 568
G L + +L L+ N+L + +G + N KS
Sbjct: 70 PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKS 103
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 221 RILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGT 280
++L L DNQI +E G+ L L +D+N+ T +P+ + L LS+ N++ +
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 281 LKADSFLSQRWLERIILRGN 300
+ +F + + L I L N
Sbjct: 93 IPRGAFDNLKSLTHIWLLNN 112
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 138/333 (41%), Gaps = 40/333 (12%)
Query: 195 RLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRF 254
+L D L + N I + L NL L L +NQI I+ LK NL L + N
Sbjct: 86 KLVDILMNN--NQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 141
Query: 255 TSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLA 314
+ I ++S G +L+ LS + N++ LK + L+ LER+ + N+++ I A
Sbjct: 142 SDISALS--GLTSLQQLSFSSNQVTDLKPLANLTT--LERLDISSNKVSDISVLA----- 192
Query: 315 KIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFF 374
+L L S + + + IL L+ + G +
Sbjct: 193 ----------KLTNLESLIATNNQISDITPLGILT-------NLDELSLNGNQLKDIGTL 235
Query: 375 QDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNN 434
L LDL N + NL L L + NQI+ +S A LT L+L+ N
Sbjct: 236 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA-GLTALTNLELNENQ 294
Query: 435 LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDE 494
L+++ P +N+ L +L L N PV L++L + + + S+
Sbjct: 295 LEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLA-----N 347
Query: 495 LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDL 527
L N+ +L HN ++++ + NL +T L L
Sbjct: 348 LTNINWLSAGHNQISDLTPL--ANLTRITQLGL 378
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 30/227 (13%)
Query: 351 GYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDN 410
G LN L F +T + ++ KL + +N N + ++ L L + +N
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 117
Query: 411 QITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP 470
QIT + N L +L+LS N + ++ +A + + +L L+ S N P+
Sbjct: 118 QITDIDPLK-NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLAN--- 171
Query: 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM---------------- 514
L LE LD+++ + I +L NL+ L +N +++I +
Sbjct: 172 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 229
Query: 515 ----MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
+L NLT LDL+NN I NL L GL + L L N+++
Sbjct: 230 KDIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQIS 274
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 28/208 (13%)
Query: 301 RLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNL-GYNRLNKLN 359
+L I+ GAF+G + + + N + + + F+ L K+H + + N L +N
Sbjct: 41 KLRVIQKGAFSGFGDLEKIEISQNDV----LEVIEADVFSNLPKLHEIRIEKANNLLYIN 96
Query: 360 SDTFQG--------THITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQ 411
+ FQ T D K+ SL L D DN+N+ +
Sbjct: 97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL-----------QKVLLDIQDNINI--HT 143
Query: 412 ITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPL 471
I S L+++ + L L+ N ++E+ +AF N L LNLS N +L LP F
Sbjct: 144 IERNSFVGLSFESVI-LWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGA 201
Query: 472 KKLEVLDLAATGLKSIPQYQFDELLNLK 499
+LD++ T + S+P Y + L L+
Sbjct: 202 SGPVILDISRTRIHSLPSYGLENLKKLR 229
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 435 LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKL-EVLDLAATGLKSIPQYQFD 493
L+ ++ AF+ L + +S+N L + F L KL E+ A L I F
Sbjct: 42 LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ 101
Query: 494 ELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN-NIVNLRVGSLYGLPSMKRLDLS 552
L NL+YL +++ + +P++ + L LD+ +N NI + S GL S + + L
Sbjct: 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL-SFESVILW 160
Query: 553 FNK 555
NK
Sbjct: 161 LNK 163
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 138/333 (41%), Gaps = 40/333 (12%)
Query: 195 RLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRF 254
+L D L + N I + L NL L L +NQI I+ LK NL L + N
Sbjct: 86 KLVDILMNN--NQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 141
Query: 255 TSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLA 314
+ I ++S G +L+ LS + N++ LK + L+ LER+ + N+++ I A
Sbjct: 142 SDISALS--GLTSLQQLSFSSNQVTDLKPLANLTT--LERLDISSNKVSDISVLA----- 192
Query: 315 KIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFF 374
+L L S + + + IL L+ + G +
Sbjct: 193 ----------KLTNLESLIATNNQISDITPLGILT-------NLDELSLNGNQLKDIGTL 235
Query: 375 QDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNN 434
L LDL N + NL L L + NQI+ +S A LT L+L+ N
Sbjct: 236 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA-GLTALTNLELNENQ 294
Query: 435 LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDE 494
L+++ P +N+ L +L L N PV L++L + + + S+
Sbjct: 295 LEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLA-----N 347
Query: 495 LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDL 527
L N+ +L HN ++++ + NL +T L L
Sbjct: 348 LTNINWLSAGHNQISDLTPL--ANLTRITQLGL 378
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 30/227 (13%)
Query: 351 GYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDN 410
G LN L F +T + ++ KL + +N N + ++ L L + +N
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 117
Query: 411 QITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP 470
QIT + N L +L+LS N + ++ +A + + +L L+ S N P+
Sbjct: 118 QITDIDPLK-NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLAN--- 171
Query: 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM---------------- 514
L LE LD+++ + I +L NL+ L +N +++I +
Sbjct: 172 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 229
Query: 515 ----MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
+L NLT LDL+NN I NL L GL + L L N+++
Sbjct: 230 KDIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQIS 274
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 99/227 (43%), Gaps = 23/227 (10%)
Query: 425 LTKLDLSHNNLKE--LEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA- 481
LT LDLS N+L T+ + L LN+S N V G L LEVLDL+A
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 482 --TGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539
+G + D LK+L ++ N ++ ++ +NL +LD+S+NN + +
Sbjct: 159 SISGANVVGWVLSDGCGELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNF-STGIPF 215
Query: 540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKL 599
L +++ LD+S NKL+ GD+ S+ ++ ++ P L
Sbjct: 216 LGDCSALQHLDISGNKLS---GDF----SRAISTCTELKLLNISSNQFVGPIPPLPLKSL 268
Query: 600 KTLKLAFNKF-NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLP 645
+ L LA NKF P L L +DLS N YG +P
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-------YGAVP 308
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 133/337 (39%), Gaps = 51/337 (15%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
L+ L L +N L C L+ L + N + SL LR L + N +
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLN------------ 327
+ + LE +IL N LT + ++ ++L NRL
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 328 ----KLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSL 383
KL++++F G L L LN++ F GT + F+ K+ +
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSL-----IWLDLNTNLFNGT--IPAAMFKQSGKIAAN 565
Query: 384 DLNGNFLINLESTGLE-------DTLDNLNVRDNQITTLSS-----------------SA 419
+ G + +++ G++ + L+ +R Q+ LS+ +
Sbjct: 566 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 625
Query: 420 LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
N + LD+S+N L P ++P L LNL N S+P D L+ L +LDL
Sbjct: 626 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDL 684
Query: 480 AATGLKS-IPQYQFDELLNLKYLCLAHNHLT-EIPEM 514
++ L IPQ L L + L++N+L+ IPEM
Sbjct: 685 SSNKLDGRIPQ-AMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 144/341 (42%), Gaps = 23/341 (6%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTS-IPSVSLNGPRALRILSMAYNRI 278
L+ LD+S N++ + C L L + N+F IP + L ++L+ LS+A N+
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKF 278
Query: 279 GTLKADSFLSQRW--LERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLN-KLNSDTFQ 335
T + FLS L + L GN F + + L L N + +L DT
Sbjct: 279 -TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 336 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES 395
+ + +L+L +N + ++ ++ + L S + +G L NL
Sbjct: 338 K-----MRGLKVLDLSFNEFSGELPESLTNLSASLLTL-----DLSSNNFSGPILPNL-C 386
Query: 396 TGLEDTLDNLNVRDNQIT-TLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
++TL L +++N T + + N L L LS N L P++ ++ L L L
Sbjct: 387 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT-EIPE 513
N +P +K LE L L L NL ++ L++N LT EIP+
Sbjct: 447 WLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 514 MMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
+ + L NL L LSNN+ L S+ LDL+ N
Sbjct: 506 WIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 86/163 (52%), Gaps = 4/163 (2%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKL-LTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
+GL + + +L++ +N+IT +S+S L + L L L+ N + +E +F+++ +L HL+L
Sbjct: 22 SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 81
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQ-FDELLNLKYLCLAH-NHLTEIP 512
S N +LS+L F PL L L+L K++ + F L L+ L + + + T+I
Sbjct: 82 SYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 140
Query: 513 EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK 555
F L L L++ +++ + SL + ++ L L +
Sbjct: 141 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 183
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
++ LDLS+N+I I L+ C NL L + N +I S + +L L ++YN +
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 280 TLKADSFLSQRWLERIILRGNRLTTI-EGGAFNGLAKIHILNLG-YNRLNKLNSDTFQGG 337
L + F L + L GN T+ E F+ L K+ IL +G + K+ F G
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 147
Query: 338 AF 339
F
Sbjct: 148 TF 149
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539
++ L SIP + + K L L++N +T I + +NL L L++N I + S
Sbjct: 13 SSGSLNSIPSGLTEAV---KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 69
Query: 540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKL 599
L S++ LDLS+N L+ +F KP +S T S F+ +KL
Sbjct: 70 FSSLGSLEHLDLSYNYLSNLSSSWF----KPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 125
Query: 600 KTLKLA-FNKFNYFPKELILGLSYLQEIDLSNNQLKTID 637
+ L++ + F ++ GL++L+E+++ + L++ +
Sbjct: 126 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 164
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 440 PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLK 499
P+ T L L+ +R ++S+ L+ L L + G+ +I + F L +L+
Sbjct: 21 PSGLTEAVKSLDLSNNRITYISN---SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 77
Query: 500 YLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
+L L++N+L+ + FK L +LT+L+L N L SL+
Sbjct: 78 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS 120
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Query: 209 FSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRAL 268
S S+ VNL+ L L+ N I IEE +L L + +N +++ S +L
Sbjct: 41 ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 100
Query: 269 RILSMAYNRIGTLKADSFLSQRWLERIILRGN--RLTTIEGGAFNGLA 314
L++ N TL S S +I+ GN T I+ F GL
Sbjct: 101 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 148
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 623 LQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLE 682
++ +DLSNN++ I + D L+ I+ I E F + L+ ++LS+N L
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 683 KLPERLF 689
L F
Sbjct: 88 NLSSSWF 94
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%)
Query: 457 NAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMF 516
N ++ L G FD L L+ L + L +IP FD+L L L L NHL IP F
Sbjct: 42 NNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAF 101
Query: 517 KNLLNLTYLDLSNN 530
NL +LT++ L NN
Sbjct: 102 DNLKSLTHIYLYNN 115
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
+N L+S+P G P K + L L + + FD L+NL+ L N LT IP +
Sbjct: 20 QNIRLASVPAGI--PTDK-QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV 76
Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRL 549
F L LT LDL++N++ ++ G+ L S+ +
Sbjct: 77 FDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI 110
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKL-LTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
G+ L + +NQIT L ++ + L +L + N L + F + L L+L
Sbjct: 29 AGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88
Query: 455 SRNAHLSSLPVGGFDPLKKL 474
+ N HL S+P G FD LK L
Sbjct: 89 NDN-HLKSIPRGAFDNLKSL 107
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 381 KSLDLNGNFLINLESTGLEDTLDNLN---VRDNQITTLSSSALN-YKLLTKLDLSHNNLK 436
+ L LN N + LE G+ D L NL N++T + + + LT+LDL+ N+LK
Sbjct: 36 QRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94
Query: 437 ELEPTAFTNVPTLLHLNLSRN 457
+ AF N+ +L H+ L N
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNN 115
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK 282
L L++NQI +E G+ NL +L + N+ T+IP+ + L L + N + ++
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 283 ADSFLSQRWLERIILRGN 300
+F + + L I L N
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 499 KYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558
+ L L +N +T++ +F +L+NL L ++N + + G L + +LDL+ N L +
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 559 F-KGDYFNTKS 568
+G + N KS
Sbjct: 96 IPRGAFDNLKS 106
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
F LVNL+ L + N++ AI G+ L +L ++ N SIP + + ++L + +
Sbjct: 53 FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112
Query: 274 AYNRIGTLKADSFLSQRWLE---RIILR 298
N D + W+ I++R
Sbjct: 113 YNNPWDCECRDIMYLRNWVADHTSIVMR 140
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 293 ERIILRGNRLTTIEGGAFNGLAKIHILNLG--YNRLNKLNSDTFQGGAFNGLAKIHILNL 350
+R+ L N++T +E G F+ H++NL Y NKL + G F+ L ++ L+L
Sbjct: 36 QRLWLNNNQITKLEPGVFD-----HLVNLQQLYFNSNKLTA--IPTGVFDKLTQLTQLDL 88
Query: 351 GYNRLNKLNSDTFQG----THITIFSFFQDFQ 378
N L + F THI +++ D +
Sbjct: 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 240 GCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRG 299
CD L + + R S+P+ P + L + N+I L+ F L+++
Sbjct: 11 SCDQTL-VNCQNIRLASVPA---GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS 66
Query: 300 NRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI-HI 347
N+LT I G F+ L ++ L+L N L + GAF+ L + HI
Sbjct: 67 NKLTAIPTGVFDKLTQLTQLDLNDNHLK-----SIPRGAFDNLKSLTHI 110
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
+RL + N + +L +F H LQ+L N T F L L LDL+
Sbjct: 36 QRLWLNNNQITKLEPGVFD-HLVNLQQLYFNSNKLT-----AIPTGVFDKLTQLTQLDLN 89
Query: 227 DNQIKAIEEGILKGCDNLLEL 247
DN +K+I G DNL L
Sbjct: 90 DNHLKSIPRGAF---DNLKSL 107
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 99/227 (43%), Gaps = 23/227 (10%)
Query: 425 LTKLDLSHNNLKE--LEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA- 481
LT LDLS N+L T+ + L LN+S N V G L LEVLDL+A
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 482 --TGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539
+G + D LK+L ++ N ++ ++ +NL +LD+S+NN + +
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNF-STGIPF 218
Query: 540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKL 599
L +++ LD+S NKL+ GD+ S+ ++ ++ P L
Sbjct: 219 LGDCSALQHLDISGNKLS---GDF----SRAISTCTELKLLNISSNQFVGPIPPLPLKSL 271
Query: 600 KTLKLAFNKF-NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLP 645
+ L LA NKF P L L +DLS N YG +P
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-------YGAVP 311
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 90/387 (23%), Positives = 146/387 (37%), Gaps = 84/387 (21%)
Query: 170 DFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQ 229
+FSG L L ++TLQEL L +N F + P S
Sbjct: 379 NFSGPILPNLCQN----PKNTLQELYLQNNGFTGKIPPTLSN------------------ 416
Query: 230 IKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQ 289
C L+ L + N + SL LR L + N + +
Sbjct: 417 -----------CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 290 RWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLN----------------KLNSDT 333
+ LE +IL N LT + ++ ++L NRL KL++++
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 334 FQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL 393
F G L L LN++ F GT + F+ K+ + + G + +
Sbjct: 526 FSGNIPAELGDCRSL-----IWLDLNTNLFNGTIPA--AMFKQSGKIAANFIAGKRYVYI 578
Query: 394 ESTGLE-------DTLDNLNVRDNQITTLSS-----------------SALNYKLLTKLD 429
++ G++ + L+ +R Q+ LS+ + N + LD
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 430 LSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKS-IP 488
+S+N L P ++P L LNL N S+P D L+ L +LDL++ L IP
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIP 697
Query: 489 QYQFDELLNLKYLCLAHNHLT-EIPEM 514
Q L L + L++N+L+ IPEM
Sbjct: 698 Q-AMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 144/341 (42%), Gaps = 23/341 (6%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTS-IPSVSLNGPRALRILSMAYNRI 278
L+ LD+S N++ + C L L + N+F IP + L ++L+ LS+A N+
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKF 281
Query: 279 GTLKADSFLSQRW--LERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLN-KLNSDTFQ 335
T + FLS L + L GN F + + L L N + +L DT
Sbjct: 282 -TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 336 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES 395
+ + +L+L +N + ++ ++ + L S + +G L NL
Sbjct: 341 K-----MRGLKVLDLSFNEFSGELPESLTNLSASLLTL-----DLSSNNFSGPILPNL-C 389
Query: 396 TGLEDTLDNLNVRDNQIT-TLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
++TL L +++N T + + N L L LS N L P++ ++ L L L
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT-EIPE 513
N +P +K LE L L L NL ++ L++N LT EIP+
Sbjct: 450 WLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 514 MMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
+ + L NL L LSNN+ L S+ LDL+ N
Sbjct: 509 WIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 138/333 (41%), Gaps = 40/333 (12%)
Query: 195 RLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRF 254
+L D L + N I + L NL L L +NQI I+ LK NL L + N
Sbjct: 86 KLVDILMNN--NQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 141
Query: 255 TSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLA 314
+ I ++S G +L+ L+ + N++ LK + L+ LER+ + N+++ I A
Sbjct: 142 SDISALS--GLTSLQQLNFSSNQVTDLKPLANLTT--LERLDISSNKVSDISVLA----- 192
Query: 315 KIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFF 374
+L L S + + + IL L+ + G +
Sbjct: 193 ----------KLTNLESLIATNNQISDITPLGILT-------NLDELSLNGNQLKDIGTL 235
Query: 375 QDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNN 434
L LDL N + NL L L + NQI+ +S A LT L+L+ N
Sbjct: 236 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA-GLTALTNLELNENQ 294
Query: 435 LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDE 494
L+++ P +N+ L +L L N PV L++L + + + S+
Sbjct: 295 LEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLA-----N 347
Query: 495 LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDL 527
L N+ +L HN ++++ + NL +T L L
Sbjct: 348 LTNINWLSAGHNQISDLTPL--ANLTRITQLGL 378
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 30/227 (13%)
Query: 351 GYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDN 410
G LN L F +T + ++ KL + +N N + ++ L L + +N
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 117
Query: 411 QITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP 470
QIT + N L +L+LS N + ++ +A + + +L LN S N P+
Sbjct: 118 QITDIDPLK-NLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKPLAN--- 171
Query: 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM---------------- 514
L LE LD+++ + I +L NL+ L +N +++I +
Sbjct: 172 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 229
Query: 515 ----MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
+L NLT LDL+NN I NL L GL + L L N+++
Sbjct: 230 KDIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQIS 274
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 28/208 (13%)
Query: 301 RLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNL-GYNRLNKLN 359
+L I+ GAF+G + + + N + + + F+ L K+H + + N L +N
Sbjct: 41 KLRVIQKGAFSGFGDLEKIEISQNDV----LEVIEADVFSNLPKLHEIRIEKANNLLYIN 96
Query: 360 SDTFQG--------THITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQ 411
+ FQ T D K+ SL L D DN+N+ +
Sbjct: 97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL-----------QKVLLDIQDNINI--HT 143
Query: 412 ITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPL 471
I S L+++ + L L+ N ++E+ AF N L LNLS N +L LP F
Sbjct: 144 IERNSFVGLSFESVI-LWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGA 201
Query: 472 KKLEVLDLAATGLKSIPQYQFDELLNLK 499
+LD++ T + S+P Y + L L+
Sbjct: 202 SGPVILDISRTRIHSLPSYGLENLKKLR 229
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 435 LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKL-EVLDLAATGLKSIPQYQFD 493
L+ ++ AF+ L + +S+N L + F L KL E+ A L I F
Sbjct: 42 LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ 101
Query: 494 ELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN-NIVNLRVGSLYGLPSMKRLDLS 552
L NL+YL +++ + +P++ + L LD+ +N NI + S GL S + + L
Sbjct: 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL-SFESVILW 160
Query: 553 FNK 555
NK
Sbjct: 161 LNK 163
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 90/204 (44%), Gaps = 25/204 (12%)
Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRV---GSLYGLPSMKRLDLSF 553
N +LC + +TEIP + +N + L ++ + LRV G+ G ++++++S
Sbjct: 11 NRVFLC-QESKVTEIPSDLPRNAIELRFV------LTKLRVIQKGAFSGFGDLEKIEISQ 63
Query: 554 NK-LTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYF 612
N L + D F+ K + Y+ P +F L+ L ++ +
Sbjct: 64 NDVLEVIEADVFSNLPKLHE----IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119
Query: 613 PKELILGLSYLQEI--DLSNN-QLKTIDDYDYGYLPRLRKXXXXXXXIDAISET--CFFN 667
P + + LQ++ D+ +N + TI+ + L + + I E C FN
Sbjct: 120 PD--VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF--ESVILWLNKNGIQEIHNCAFN 175
Query: 668 SSQLQIINLS-FNRLEKLPERLFN 690
+QL +NLS N LE+LP +F+
Sbjct: 176 GTQLDELNLSDNNNLEELPNDVFH 199
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 141/343 (41%), Gaps = 41/343 (11%)
Query: 195 RLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRF 254
+L D L + N I + L NL L L +NQI I+ LK NL L + N
Sbjct: 90 KLVDILMNN--NQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 145
Query: 255 TSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLA 314
+ I ++S G +L+ LS N++ LK + L+ LER+ + N+++ I A
Sbjct: 146 SDISALS--GLTSLQQLSFG-NQVTDLKPLANLTT--LERLDISSNKVSDISVLA----- 195
Query: 315 KIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFF 374
+L L S + + + IL L+ + G +
Sbjct: 196 ----------KLTNLESLIATNNQISDITPLGILT-------NLDELSLNGNQLKDIGTL 238
Query: 375 QDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNN 434
L LDL N + NL L L + NQI+ +S A LT L+L+ N
Sbjct: 239 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA-GLTALTNLELNENQ 297
Query: 435 LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDE 494
L+++ P +N+ L +L L N PV L++L + + + S+
Sbjct: 298 LEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLA-----N 350
Query: 495 LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRV 537
L N+ +L HN ++++ + NL +T L L++ N V
Sbjct: 351 LTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQAWTNAPV 391
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 93/221 (42%), Gaps = 19/221 (8%)
Query: 351 GYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDN 410
G LN L F +T + ++ KL + +N N + ++ L L + +N
Sbjct: 62 GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 121
Query: 411 QITTLSSSALNYKLLTKLDLSHNNLKELEPTA-------------FTNVPTLLHLNLSRN 457
QIT + N L +L+LS N + ++ + T++ L +L
Sbjct: 122 QITDIDPLK-NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 180
Query: 458 AHLSSLPVGGFDPLKKLEVLD-LAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMF 516
+SS V L KL L+ L AT + L NL L L N L +I +
Sbjct: 181 LDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL-- 238
Query: 517 KNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
+L NLT LDL+NN I NL L GL + L L N+++
Sbjct: 239 ASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQIS 277
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 141/343 (41%), Gaps = 41/343 (11%)
Query: 195 RLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRF 254
+L D L + N I + L NL L L +NQI I+ LK NL L + N
Sbjct: 91 KLVDILMNN--NQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 146
Query: 255 TSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLA 314
+ I ++S G +L+ LS N++ LK + L+ LER+ + N+++ I A
Sbjct: 147 SDISALS--GLTSLQQLSFG-NQVTDLKPLANLTT--LERLDISSNKVSDISVLA----- 196
Query: 315 KIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFF 374
+L L S + + + IL L+ + G +
Sbjct: 197 ----------KLTNLESLIATNNQISDITPLGILT-------NLDELSLNGNQLKDIGTL 239
Query: 375 QDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNN 434
L LDL N + NL L L + NQI+ +S A LT L+L+ N
Sbjct: 240 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA-GLTALTNLELNENQ 298
Query: 435 LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDE 494
L+++ P +N+ L +L L N PV L++L + + + S+
Sbjct: 299 LEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLA-----N 351
Query: 495 LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRV 537
L N+ +L HN ++++ + NL +T L L++ N V
Sbjct: 352 LTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQAWTNAPV 392
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 93/221 (42%), Gaps = 19/221 (8%)
Query: 351 GYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDN 410
G LN L F +T + ++ KL + +N N + ++ L L + +N
Sbjct: 63 GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 122
Query: 411 QITTLSSSALNYKLLTKLDLSHNNLKELEPTA-------------FTNVPTLLHLNLSRN 457
QIT + N L +L+LS N + ++ + T++ L +L
Sbjct: 123 QITDIDPLK-NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 181
Query: 458 AHLSSLPVGGFDPLKKLEVLD-LAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMF 516
+SS V L KL L+ L AT + L NL L L N L +I +
Sbjct: 182 LDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL-- 239
Query: 517 KNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
+L NLT LDL+NN I NL L GL + L L N+++
Sbjct: 240 ASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQIS 278
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 108/446 (24%), Positives = 168/446 (37%), Gaps = 119/446 (26%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+ LD S N L LS F P L L+ NL G+ + TS F L NL+ L +
Sbjct: 76 LEHLDLSDNHLSSLSSSWFGP----LSSLKYL-NLMGNPYQTLGVTSLFPNLTNLQTLRI 130
Query: 226 SD----NQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTL 281
+ ++I+ I+ G +L EL + + S SL R + L++ + L
Sbjct: 131 GNVETFSEIRRID---FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187
Query: 282 K---ADSFLSQRWLE------------------------RIILRGNRLTTIEGGAFNGLA 314
AD S R+LE ++ RG+ LT +FN L
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT---DESFNELL 244
Query: 315 KI--HILNL-----------GYNRLNKLNSDTF-QGGAFNGLA--KIHI--------LNL 350
K+ +IL L G N SD + G + ++HI L+
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304
Query: 351 GYNRLNKLNSDTFQGTHITIF--SFFQDFQKLKSLDLNGNFLI-----NLESTGLEDTLD 403
Y+ L K+ T + + + + SF Q + L+ LDL+ N ++ N G +L
Sbjct: 305 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364
Query: 404 NLNVRDNQITTLSSSA---LNYKLLTKLDLSHNNLKEL-------EPTAFTNV------- 446
L + N + ++ + L K LT LD+S N + E F N+
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV 424
Query: 447 --------------------------PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLA 480
P L L +SRN L +LP P+ L V+ ++
Sbjct: 425 VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDASLFPV--LLVMKIS 481
Query: 481 ATGLKSIPQYQFDELLNLKYLCLAHN 506
LKS+P FD L +L+ + L N
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 72/184 (39%), Gaps = 38/184 (20%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
++ LDLS N+I I G L+ C N L++L + +RI
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACAN------------------------LQVLILKSSRIN 63
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
T++ D+F S LE + L N L+++ F L+ + LNL N L + F
Sbjct: 64 TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL----F 119
Query: 340 NGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLE 399
L + L +G N +TF F+ L L++ L N +S L+
Sbjct: 120 PNLTNLQTLRIG-------NVETFSEIRRIDFA---GLTSLNELEIKALSLRNYQSQSLK 169
Query: 400 DTLD 403
D
Sbjct: 170 SIRD 173
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 21/131 (16%)
Query: 442 AFTNVPTLL-----HLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELL 496
+FT++P+ L L+LS N ++ + G L+VL L ++ + +I F L
Sbjct: 16 SFTSIPSGLTAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 74
Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN---------------NIVNLRVGSLY 541
+L++L L+ NHL+ + F L +L YL+L N N+ LR+G++
Sbjct: 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134
Query: 542 GLPSMKRLDLS 552
++R+D +
Sbjct: 135 TFSEIRRIDFA 145
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 137/333 (41%), Gaps = 41/333 (12%)
Query: 195 RLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRF 254
+L D L + N I + L NL L L +NQI I+ LK NL L + N
Sbjct: 86 KLVDILMNN--NQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 141
Query: 255 TSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLA 314
+ I ++S G +L+ L+ N++ LK + L+ LER+ + N+++ I A
Sbjct: 142 SDISALS--GLTSLQQLNFG-NQVTDLKPLANLTT--LERLDISSNKVSDISVLA----- 191
Query: 315 KIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFF 374
+L L S + + + IL L+ + G +
Sbjct: 192 ----------KLTNLESLIATNNQISDITPLGILT-------NLDELSLNGNQLKDIGTL 234
Query: 375 QDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNN 434
L LDL N + NL L L + NQI+ +S A LT L+L+ N
Sbjct: 235 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA-GLTALTNLELNENQ 293
Query: 435 LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDE 494
L+++ P +N+ L +L L N PV L++L + + + S+
Sbjct: 294 LEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLA-----N 346
Query: 495 LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDL 527
L N+ +L HN ++++ + NL +T L L
Sbjct: 347 LTNINWLSAGHNQISDLTPL--ANLTRITQLGL 377
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 351 GYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDN 410
G LN L F +T + ++ KL + +N N + ++ L L + +N
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 117
Query: 411 QITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN-------AHLSSL 463
QIT + N L +L+LS N + ++ +A + + +L LN A+L++L
Sbjct: 118 QITDIDPLK-NLTNLNRLELSSNTISDI--SALSGLTSLQQLNFGNQVTDLKPLANLTTL 174
Query: 464 P--------VGGFDPLKKLEVLD-LAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM 514
V L KL L+ L AT + L NL L L N L +I +
Sbjct: 175 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL 234
Query: 515 MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
+L NLT LDL+NN I NL L GL + L L N+++
Sbjct: 235 --ASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQIS 273
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 137/333 (41%), Gaps = 41/333 (12%)
Query: 195 RLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRF 254
+L D L + N I + L NL L L +NQI I+ LK NL L + N
Sbjct: 86 KLVDILMNN--NQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 141
Query: 255 TSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLA 314
+ I ++S G +L+ L+ N++ LK + L+ LER+ + N+++ I A
Sbjct: 142 SDISALS--GLTSLQQLNFG-NQVTDLKPLANLTT--LERLDISSNKVSDISVLA----- 191
Query: 315 KIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFF 374
+L L S + + + IL L+ + G +
Sbjct: 192 ----------KLTNLESLIATNNQISDITPLGILT-------NLDELSLNGNQLKDIGTL 234
Query: 375 QDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNN 434
L LDL N + NL L L + NQI+ +S A LT L+L+ N
Sbjct: 235 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA-GLTALTNLELNENQ 293
Query: 435 LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDE 494
L+++ P +N+ L +L L N PV L++L + + + S+
Sbjct: 294 LEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLA-----N 346
Query: 495 LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDL 527
L N+ +L HN ++++ + NL +T L L
Sbjct: 347 LTNINWLSAGHNQISDLTPL--ANLTRITQLGL 377
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 351 GYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDN 410
G LN L F +T + ++ KL + +N N + ++ L L + +N
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 117
Query: 411 QITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN-------AHLSSL 463
QIT + N L +L+LS N + ++ +A + + +L LN A+L++L
Sbjct: 118 QITDIDPLK-NLTNLNRLELSSNTISDI--SALSGLTSLQQLNFGNQVTDLKPLANLTTL 174
Query: 464 P--------VGGFDPLKKLEVLD-LAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM 514
V L KL L+ L AT + L NL L L N L +I +
Sbjct: 175 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL 234
Query: 515 MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
+L NLT LDL+NN I NL L GL + L L N+++
Sbjct: 235 --ASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQIS 273
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 72/184 (39%), Gaps = 38/184 (20%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
++ LDLS N+I I G L+ C N L++L + +RI
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACAN------------------------LQVLILKSSRIN 89
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
T++ D+F S LE + L N L+++ F L+ + LNL N L + F
Sbjct: 90 TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL----F 145
Query: 340 NGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLE 399
L + L +G N +TF F+ L L++ L N +S L+
Sbjct: 146 PNLTNLQTLRIG-------NVETFSEIRRIDFA---GLTSLNELEIKALSLRNYQSQSLK 195
Query: 400 DTLD 403
D
Sbjct: 196 SIRD 199
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 21/131 (16%)
Query: 442 AFTNVPTLL-----HLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELL 496
+FT++P+ L L+LS N ++ + G L+VL L ++ + +I F L
Sbjct: 42 SFTSIPSGLTAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 100
Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN---------------NIVNLRVGSLY 541
+L++L L+ NHL+ + F L +L YL+L N N+ LR+G++
Sbjct: 101 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 160
Query: 542 GLPSMKRLDLS 552
++R+D +
Sbjct: 161 TFSEIRRIDFA 171
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 87/182 (47%), Gaps = 12/182 (6%)
Query: 376 DFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNL 435
D + +L G + +E + L L ++DNQIT L+ N +T+L+LS N L
Sbjct: 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLK-NLTKITELELSGNPL 97
Query: 436 KELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDEL 495
K + +A + ++ L+L+ P+ G L L+VL L + +I L
Sbjct: 98 KNV--SAIAGLQSIKTLDLTSTQITDVTPLAG---LSNLQVLYLDLNQITNI--SPLAGL 150
Query: 496 LNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK 555
NL+YL + + ++++ + NL LT L +N I + + L LP++ + L N+
Sbjct: 151 TNLQYLSIGNAQVSDLTPL--ANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQ 206
Query: 556 LT 557
++
Sbjct: 207 IS 208
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 204 SLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLN 263
S NP+ + S GL +++ LDL+ QI + L G NL L +D N+ T+I L
Sbjct: 93 SGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS--PLA 148
Query: 264 GPRALRILSMAYNRIGTLKADSFLSQ 289
G L+ LS+ ++ L + LS+
Sbjct: 149 GLTNLQYLSIGNAQVSDLTPLANLSK 174
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 14/189 (7%)
Query: 351 GYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDN 410
G LN L + IT + ++ K+ L+L+GN L N+ + ++ L++
Sbjct: 58 GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST 117
Query: 411 QITTLSSSALNYKLLTKLDLSHNNLKELEPTA-FTNVPTLLHLNLSRNAHLSSL-PVGGF 468
QIT ++ A L L L N + + P A TN L +L++ NA +S L P+
Sbjct: 118 QITDVTPLA-GLSNLQVLYLDLNQITNISPLAGLTN---LQYLSIG-NAQVSDLTPLANL 172
Query: 469 DPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLS 528
L L+ D + + + L NL + L +N ++++ + N NL + L+
Sbjct: 173 SKLTTLKADDNKISDISPLA-----SLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLT 225
Query: 529 NNNIVNLRV 537
N I N V
Sbjct: 226 NQTITNQPV 234
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 459 HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKN 518
L+ +P ++ L L+L A ++ +P + FD+L NL+ + N L ++P +F
Sbjct: 134 RLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGK 192
Query: 519 LLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
+ L L+L++N + ++ G L S++++ L N
Sbjct: 193 MPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 52/129 (40%), Gaps = 2/129 (1%)
Query: 207 PIFSTSEFHGLVNLRILDL-SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP 265
PI S ++ G+V+ L SDN I L L R R T IP+ L
Sbjct: 87 PIASILDYLGIVSPTTLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDM 146
Query: 266 RALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR 325
R L L + N I + + F LE I N+L + G F + K+ LNL N+
Sbjct: 147 RNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQ 205
Query: 326 LNKLNSDTF 334
L + F
Sbjct: 206 LKSVPDGIF 214
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 599 LKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRK 649
L++++ NK P+ + + L++++L++NQLK++ D + L L+K
Sbjct: 172 LESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQK 222
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 23/102 (22%)
Query: 487 IPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN-------------NIV 533
I + D L LK LT IP + ++ NL++L+L N N+
Sbjct: 114 ITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHLFDDLENLE 173
Query: 534 NLRVGS---------LYG-LPSMKRLDLSFNKLTTFKGDYFN 565
++ GS ++G +P +K+L+L+ N+L + F+
Sbjct: 174 SIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFD 215
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 17/158 (10%)
Query: 225 LSDNQIKAIE-EGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKA 283
L+DN++ I +G+ +L++L + N+ T I + G ++ L + N+I +
Sbjct: 36 LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Query: 284 DSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN---------------RLNK 328
FL L+ + L N+++ + G+F L + LNL N R
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKS 155
Query: 329 LNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGT 366
LN + GA + + + I +L ++ K +S+ +G
Sbjct: 156 LNGGAARCGAPSKVRDVQIKDLPHSEF-KCSSENSEGC 192
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 409 DNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVG 466
DN++ +SS L +L L KL+L N L +EP AF + L L N + +
Sbjct: 38 DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNK 96
Query: 467 GFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN------HLTEIPEMMFKNLL 520
F L +L+ L+L + + F+ L +L L LA N HL E + K L
Sbjct: 97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSL 156
Query: 521 N 521
N
Sbjct: 157 N 157
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 33/141 (23%)
Query: 508 LTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYG-LPSMKRLDLSFNKLTTFKGDYFNT 566
L EIP + L+ T L L++N + + L+G LP + +L+L N+LT +
Sbjct: 20 LKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE------ 70
Query: 567 KSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEI 626
P++F S ++ L+L NK ++ LGL L+ +
Sbjct: 71 -----------------------PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107
Query: 627 DLSNNQLKTIDDYDYGYLPRL 647
+L +NQ+ + + +L L
Sbjct: 108 NLYDNQISCVMPGSFEHLNSL 128
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 9/136 (6%)
Query: 476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIP-EMMFKNLLNLTYLDLSNNNIVN 534
+D GLK IP+ D L+ L L N L I + +F L +L L+L N +
Sbjct: 12 TVDCTGRGLKEIPR---DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68
Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFT 594
+ + G ++ L L NK+ F + T + + P SF
Sbjct: 69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT-----LNLYDNQISCVMPGSFE 123
Query: 595 IHSKLKTLKLAFNKFN 610
+ L +L LA N FN
Sbjct: 124 HLNSLTSLNLASNPFN 139
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 18/179 (10%)
Query: 163 DIPIR--RLDFSGNALRRLS-DKLFS--PHRDTLQELRLADNLFGDSLNPIFSTSEFHGL 217
DIP+ L + N L R+S D LF PH L +L L N + P + F G
Sbjct: 26 DIPLHTTELLLNDNELGRISSDGLFGRLPH---LVKLELKRNQL-TGIEP----NAFEGA 77
Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
+++ L L +N+IK I + G L L + N+ + + S +L L++A N
Sbjct: 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137
Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 336
++ ++ WL + L G GA + + + I +L ++ K +S+ +G
Sbjct: 138 FNCNCHLAWFAE-WLRKKSLNGG---AARCGAPSKVRDVQIKDLPHSEF-KCSSENSEG 191
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 96/224 (42%), Gaps = 59/224 (26%)
Query: 377 FQKLKSLDLNGNFLINLESTGLEDTLD-------NLNVRDNQITTLSSSALNYKLLTKLD 429
QK+++ NGN ++N+ +GL D L + DN +T+L AL +L T L+
Sbjct: 31 VQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSL--PALPPELRT-LE 87
Query: 430 LSHNNLKELEPTAFTNVPTLLHLNLSRN--AHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
+S N L L P LL L++ N HL +LP G L KL + T L +
Sbjct: 88 VSGNQLTSLP----VLPPGLLELSIFSNPLTHLPALPSG----LCKLWIFGNQLTSLPVL 139
Query: 488 PQYQFDELLNLKYLCLAHNHLTEIPEM--------MFKNLL--------NLTYLDLSNNN 531
P L+ L ++ N L +P + + N L L L +S+N
Sbjct: 140 PP-------GLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ 192
Query: 532 IVNL---------------RVGSLYGLPS-MKRLDLSFNKLTTF 559
+ +L R+ SL LPS +K L +S N+LT+
Sbjct: 193 LASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSL 236
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 119/291 (40%), Gaps = 37/291 (12%)
Query: 271 LSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNK-- 328
L +A ++ +++ +L+ LE + L GN++T I + L K+ L +G N++
Sbjct: 49 LVVAGEKVASIQGIEYLTN--LEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITDIS 104
Query: 329 ------------LNSDTFQG-GAFNGLAKIHILNLGYNR----------LNKLNSDTFQG 365
LN D L K + LNLG N LN T
Sbjct: 105 ALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTE 164
Query: 366 THITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLL 425
+ + + + L SL LN N + ++ +L NQIT ++ A N L
Sbjct: 165 SKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVA-NXTRL 223
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
L + +N + +L P A N+ L L + N +S + L KL+ L++ + +
Sbjct: 224 NSLKIGNNKITDLSPLA--NLSQLTWLEIGTN-QISD--INAVKDLTKLKXLNVGSNQIS 278
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR 536
I + L L L L +N L + L NLT L LS N+I ++R
Sbjct: 279 DISV--LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIR 327
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 598 KLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRK 649
++K L L NK PK+++ L LQE+++++NQLK++ D + L L+K
Sbjct: 422 RIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQK 472
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 469 DPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLS 528
D +K +L+++ + + L L+ L ++HN + + +FK L YLDLS
Sbjct: 18 DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77
Query: 529 NNNIVNLRVGSLYGLPSMKRLDLSFN 554
+N +V + S + ++K LDLSFN
Sbjct: 78 HNKLVKI---SCHPTVNLKHLDLSFN 100
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 28/151 (18%)
Query: 383 LDLNGNFLIN--LESTGLEDTLDNLNVRDNQITTLSSSA---LNYKLLTKLDLSHNNLKE 437
LD + N L + E+ G L+ L ++ NQ+ LS A K L +LD+S N++
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 438 LEPTA-FTNVPTLLHLNLSRNA---------------------HLSSLPVGGFDPLKKLE 475
E + +LL LN+S N + S+P L+ L+
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIP-KQVVKLEALQ 447
Query: 476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
L++A+ LKS+P FD L +L+ + L N
Sbjct: 448 ELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLV-NLRILD 224
+++LD S N++ K +L L ++ N+ D++ F L +++LD
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI--------FRCLPPRIKVLD 427
Query: 225 LSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIP 258
L N+IK+I + ++K + L EL + N+ S+P
Sbjct: 428 LHSNKIKSIPKQVVK-LEALQELNVASNQLKSVP 460
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 211 TSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSI---PSVSL 262
TS+ L LRIL +S N+I+ ++ + K L L + HN+ I P+V+L
Sbjct: 38 TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNL 92
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 206 NPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP 265
NP+ + S GL +++ LDL+ QI + L G NL L +D N+ T+I ++ G
Sbjct: 101 NPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLA--GL 156
Query: 266 RALRILSMAYNRIGTLKADSFLSQ 289
L+ LS+ N++ L + LS+
Sbjct: 157 TNLQYLSIGNNQVNDLTPLANLSK 180
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 21/138 (15%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
L L+L N + +L P N+ + L LS N + + G L+ ++ LDL +T +
Sbjct: 71 LIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNVSAIAG---LQSIKTLDLTSTQI 125
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
+ L NL+ L L N +T I + L NL YL + NN +V L L
Sbjct: 126 TDV--TPLAGLSNLQVLYLDLNQITNISPL--AGLTNLQYLSIGNN-----QVNDLTPLA 176
Query: 545 SMKRLDLSFNKLTTFKGD 562
++ KLTT + D
Sbjct: 177 NLS-------KLTTLRAD 187
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 166 IRRLDFSGNALRRLSD--KLFSPHRDTLQELRLAD--NLFGDS--------LNPIFSTSE 213
I L+ SGN L+ +S L S L ++ D L G S LN I + S
Sbjct: 93 ITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP 152
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSI 257
GL NL+ L + +NQ+ + L L LR D N+ + I
Sbjct: 153 LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDI 194
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 106/471 (22%), Positives = 176/471 (37%), Gaps = 104/471 (22%)
Query: 246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI 305
ELRM F S LR+L +++NRI +L FL + LE + + NRL I
Sbjct: 66 ELRMPDISFLS----------ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI 115
Query: 306 EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 365
+A + L+L +N + L F L K+ L L + +L D
Sbjct: 116 SCCP---MASLRHLDLSFNDFDVLPV----CKEFGNLTKLTFLGLSAAKFRQL--DLLPV 166
Query: 366 THITIFSFFQDFQKLKSLDLNGNFLINLESTGLE---DTLDNLNVRDNQI----TTLSSS 418
H+ + D L S + G E+ L+ T+ +L N + +S +
Sbjct: 167 AHLHLSCILLD---LVSYHIKGG-----ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218
Query: 419 ALNYKLLTKLDLSHNNLKELEP--TAFTNVPTLLHLNLSRNAHLSSLPVGGFD-----PL 471
AL + L+ + L+ N + L + T PTLL++ L V F P+
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278
Query: 472 KKLEVLDL-------------AATGLKSI---------------PQYQFDELLNLKYLCL 503
+ L + +L + T LKS+ Y +N+K L +
Sbjct: 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338
Query: 504 AHN---HLTEIPEMMFKNLLNLTY-------------------LDLSNNNIVNLRVGSLY 541
+ H+ P LN T L L N + N +L
Sbjct: 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM 398
Query: 542 --GLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSF--TIHS 597
+ S++ LD+S N L N+ + T + + + S +
Sbjct: 399 TKNMSSLETLDVSLNSL--------NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP 450
Query: 598 KLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLR 648
K+K L L N+ PK+ + L LQE+++++NQLK++ D + L L+
Sbjct: 451 KVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQ 500
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 369 TIFSFFQDFQKLKSLDLNGNFLINLESTGL-EDTLDNLNVRDNQITTLSSSALNYKL--- 424
++F ++L++L L N L N L + +L D + +L+S A +
Sbjct: 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427
Query: 425 --LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAAT 482
+ L+LS N L + F +P + + N + S+P L+ L+ L++A+
Sbjct: 428 ESILVLNLSSNMLTG---SVFRCLPPKVKVLDLHNNRIMSIP-KDVTHLQALQELNVASN 483
Query: 483 GLKSIPQYQFDELLNLKYLCLAHN 506
LKS+P FD L +L+Y+ L N
Sbjct: 484 QLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 473 KLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNI 532
+ + L L+ + + L L+ L L+HN + + +F +L YLD+S+N +
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 533 VNLRVGSLYGLPSMKRLDLSFN 554
N+ S + S++ LDLSFN
Sbjct: 113 QNI---SCCPMASLRHLDLSFN 131
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 182 KLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGC 241
K S ++++ ELR+ D F L LR+L LS N+I++++ +
Sbjct: 55 KALSLSQNSISELRMPDISF---------------LSELRVLRLSHNRIRSLDFHVFLFN 99
Query: 242 DNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTL 281
+L L + HNR +I + +LR L +++N L
Sbjct: 100 QDLEYLDVSHNRLQNISCCPM---ASLRHLDLSFNDFDVL 136
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 26/122 (21%)
Query: 398 LEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHN---NLKELEPTAFTNVPTLLHLNL 454
L +L+ LNVRDN +T L + LT LD+S N L EL P + +LN
Sbjct: 255 LPPSLEALNVRDNYLTDLPELP---QSLTFLDVSENIFSGLSELPPNLY-------YLNA 304
Query: 455 SRNA--HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIP 512
S N L LP L++L V + L ++P L+ L + NHL E+P
Sbjct: 305 SSNEIRSLCDLPPS----LEELNVSNNKLIELPALPPR-------LERLIASFNHLAEVP 353
Query: 513 EM 514
E+
Sbjct: 354 EL 355
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 22/181 (12%)
Query: 378 QKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKE 437
Q LKSL ++ N L L + L L+ L V +NQ+ L N L +D+ +N+LK+
Sbjct: 111 QSLKSLLVDNNNLKAL--SDLPPLLEYLGVSNNQLEKLPELQ-NSSFLKIIDVDNNSLKK 167
Query: 438 LEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLN 497
L ++P L + N L LP L L + LK +P D L+
Sbjct: 168 L-----PDLPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLP----DLPLS 216
Query: 498 LKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL-PSMKRLDLSFNKL 556
L+ + +N L E+PE+ L Y D NN+ + +L L PS++ L++ N L
Sbjct: 217 LESIVAGNNILEELPELQNLPFLTTIYAD---NNL----LKTLPDLPPSLEALNVRDNYL 269
Query: 557 T 557
T
Sbjct: 270 T 270
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 89/207 (42%), Gaps = 19/207 (9%)
Query: 351 GYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDN 410
G +L L +IT Q+ L L + N L NL+ T L L LN N
Sbjct: 59 GIEKLTGLTKLICTSNNITTLDLSQN-TNLTYLACDSNKLTNLDVTPLTK-LTYLNCDTN 116
Query: 411 QITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP 470
++T L S LLT L+ + N L E++ + T L L+ N ++ L V P
Sbjct: 117 KLTKLDVSQ--NPLLTYLNCARNTLTEIDVSHNTQ---LTELDCHLNKKITKLDVT---P 168
Query: 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
+L LD + + + Q ++LLN + C +N I ++ + LT+LD S+N
Sbjct: 169 QTQLTTLDCSFNKITELDVSQ-NKLLN-RLNCDTNN----ITKLDLNQNIQLTFLDCSSN 222
Query: 531 NIVNLRVGSLYGLPSMKRLDLSFNKLT 557
+ + V L L D S N LT
Sbjct: 223 KLTEIDVTPLTQL---TYFDCSVNPLT 246
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 15/97 (15%)
Query: 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
L L++ +++A +I +Y F L L L N LTE+P + KNL NL LDLS+N
Sbjct: 231 LSNLQIFNISA----NIFKYDF-----LTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHN 280
Query: 531 NIVNL--RVGSLYGLPSMKRLDLSFNKLTTFKGDYFN 565
+ +L +GS + L D N +TT ++ N
Sbjct: 281 RLTSLPAELGSCFQLKYFYFFD---NMVTTLPWEFGN 314
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK 282
LDLS+ QI I I K D L L ++ N T +P+ + LR+L +++NR+ +L
Sbjct: 229 LDLSNLQIFNISANIFK-YDFLTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTSLP 286
Query: 283 ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNK 328
A+ S L+ N +TT+ F L + L + N L K
Sbjct: 287 AE-LGSCFQLKYFYFFDNMVTTLP-WEFGNLCNLQFLGVEGNPLEK 330
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 94/262 (35%), Gaps = 38/262 (14%)
Query: 206 NPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSV-SLNG 264
N + F V L L L NQI+ I E D + L HN+ IP++ +
Sbjct: 583 NKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS 642
Query: 265 PRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
+ +YN+IG+ R + + G+ + L YN
Sbjct: 643 VYVXGSVDFSYNKIGS------------------EGRNISCSXDDYKGI-NASTVTLSYN 683
Query: 325 RLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLD 384
+ K ++ F G + I + L N + ++ + +++ L ++D
Sbjct: 684 EIQKFPTELFATG-----SPISTIILSNNLXTSIPENSLKPKD----GNYKNTYLLTTID 734
Query: 385 LNGNFLINLESTGLEDT---LDNLNVRDNQITTLSSSALNYKLLTKLDLSH------NNL 435
L N L +L T L N +V N ++ + LN L + H N +
Sbjct: 735 LRFNKLTSLSDDFRATTLPYLSNXDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRI 794
Query: 436 KELEPTAFTNVPTLLHLNLSRN 457
PT T P+L+ L + N
Sbjct: 795 LRQWPTGITTCPSLIQLQIGSN 816
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 81/223 (36%), Gaps = 49/223 (21%)
Query: 510 EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK---LTTFKGDYFNT 566
E E+ + NL +LT ++L N LY LP ++ L+++ N+ K D+
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNXTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540
Query: 567 KSKPNTSSXXXXXXXXXXXTYLFPSS------------------------FTIHSKLKTL 602
+T FP+S F + KL L
Sbjct: 541 ADDEDTGPKIQIFYXGYNNLEEFPASASLQKXVKLGLLDCVHNKVRHLEAFGTNVKLTDL 600
Query: 603 KLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRL--RKXXXXXXXID-- 658
KL +N+ P++ ++ + S+N+LK Y+P + K +D
Sbjct: 601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--------YIPNIFNAKSVYVXGSVDFS 652
Query: 659 -------AISETCF---FNSSQLQIINLSFNRLEKLPERLFNT 691
+ +C + + LS+N ++K P LF T
Sbjct: 653 YNKIGSEGRNISCSXDDYKGINASTVTLSYNEIQKFPTELFAT 695
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+R L N ++++ + DTL+EL + S N I S S LVNLR+L +
Sbjct: 72 LRILSLGRNLIKKIEN--LDAVADTLEELWI-------SYNQIASLSGIEKLVNLRVLYM 122
Query: 226 SDNQI 230
S+N+I
Sbjct: 123 SNNKI 127
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 31/146 (21%)
Query: 412 ITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPL 471
I + ++ K L LS NN++++ ++ + + L L+L RN +
Sbjct: 37 IEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNL------------I 82
Query: 472 KKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNN 531
KK+E LD A L+ L +++N + + + + L+NL L +SNN
Sbjct: 83 KKIENLDAVADTLEE--------------LWISYNQIASLSGI--EKLVNLRVLYMSNNK 126
Query: 532 IVNL-RVGSLYGLPSMKRLDLSFNKL 556
I N + L L ++ L L+ N L
Sbjct: 127 ITNWGEIDKLAALDKLEDLLLAGNPL 152
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+R L N ++++ + DTL+EL + S N I S S LVNLR+L +
Sbjct: 73 LRILSLGRNLIKKIEN--LDAVADTLEELWI-------SYNQIASLSGIEKLVNLRVLYM 123
Query: 226 SDNQI 230
S+N+I
Sbjct: 124 SNNKI 128
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 31/146 (21%)
Query: 412 ITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPL 471
I + ++ K L LS NN++++ ++ + + L L+L RN +
Sbjct: 38 IEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNL------------I 83
Query: 472 KKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNN 531
KK+E LD A L+ L +++N + + + + L+NL L +SNN
Sbjct: 84 KKIENLDAVADTLEE--------------LWISYNQIASLSGI--EKLVNLRVLYMSNNK 127
Query: 532 IVNL-RVGSLYGLPSMKRLDLSFNKL 556
I N + L L ++ L L+ N L
Sbjct: 128 ITNWGEIDKLAALDKLEDLLLAGNPL 153
>pdb|3NYU|A Chain A, X-Ray Crystal Structure Of The Wbpe (Wlbe)
Aminotransferase From Pseudomonas Aeruginosa As The Plp
Internal Aldimine Adduct With Lysine 185
pdb|3NYU|B Chain B, X-Ray Crystal Structure Of The Wbpe (Wlbe)
Aminotransferase From Pseudomonas Aeruginosa As The Plp
Internal Aldimine Adduct With Lysine 185
pdb|3NYU|C Chain C, X-Ray Crystal Structure Of The Wbpe (Wlbe)
Aminotransferase From Pseudomonas Aeruginosa As The Plp
Internal Aldimine Adduct With Lysine 185
pdb|3NYU|D Chain D, X-Ray Crystal Structure Of The Wbpe (Wlbe)
Aminotransferase From Pseudomonas Aeruginosa As The Plp
Internal Aldimine Adduct With Lysine 185
Length = 367
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 444 TNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCL 503
VPT +H + N + D KL V D AAT + S+P + + + ++K +C
Sbjct: 301 AGVPTAVHYPIPLNKQPAVA-----DEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICA 355
Query: 504 AHNHL 508
A +L
Sbjct: 356 ALTNL 360
>pdb|3NYS|A Chain A, X-Ray Structure Of The K185a Mutant Of Wbpe (Wlbe) From
Pseudomonas Aeruginosa In Complex With Plp At 1.45
Angstrom Resolution
pdb|3NYT|A Chain A, X-Ray Crystal Structure Of The Wlbe (Wpbe)
Aminotransferase From Pseudomonas Aeruginosa, Mutation
K185a, In Complex With The Plp External Aldimine Adduct
With Udp-3-Amino-2-N-Acetyl-Glucuronic Acid, At 1.3
Angstrom Resolution
Length = 367
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 444 TNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCL 503
VPT +H + N + D KL V D AAT + S+P + + + ++K +C
Sbjct: 301 AGVPTAVHYPIPLNKQPAVA-----DEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICA 355
Query: 504 AHNHL 508
A +L
Sbjct: 356 ALTNL 360
>pdb|1GH6|B Chain B, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen
Length = 333
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYL---CLAHNHLTEIPEM 514
A LS P+ FD +K+ +++ +T L + ++ L YL L L+E PE+
Sbjct: 184 AWLSDSPL--FDLIKQSKLVPRGSTSLSLF----YKKVYRLAYLRLNTLCERLLSEHPEL 237
Query: 515 ------MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGD 562
+F++ L Y + + ++ + + S+YG+ +K +DL F + T D
Sbjct: 238 EHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKD 291
>pdb|3KQ5|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Coxiella Burnetii
Length = 393
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 511 IPEMMF--KNLLNLTYLDLSNNNIVNL-----RVGSLYGLPSMKRLDLSFNKLTTFKGDY 563
IPE +F K + Y+DL N VNL + G+L+GL + +D F +L + D
Sbjct: 274 IPEGVFLEKTGIFKQYIDLHVNVPVNLFTVYQQFGNLFGLTKLSGIDYRFEQLFSEYPDA 333
Query: 564 FNTKSK 569
KSK
Sbjct: 334 LKRKSK 339
>pdb|4EGG|A Chain A, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
pdb|4EGG|B Chain B, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
pdb|4EGG|C Chain C, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
pdb|4EGG|D Chain D, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
pdb|4EGG|E Chain E, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
pdb|4EGG|F Chain F, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
Length = 207
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 489 QYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
Q +E L K +C A NH + MM K L++ + ++N +++ + YG
Sbjct: 19 QTLINERLRAKVICFALNHTNPVATMMRKVLIDALFQTTTDNVSISIPFDTDYG 72
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 92/228 (40%), Gaps = 25/228 (10%)
Query: 412 ITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPL 471
+ +L SA N K +LDLS N L ++ L LNLS N +L + L
Sbjct: 26 LASLRQSAWNVK---ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTL 82
Query: 472 KKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNN 531
+ L++ + L P +++ L A+N+++ + + N+ L+NN
Sbjct: 83 RTLDLNNNYVQELLVGP--------SIETLHAANNNISRVSCSRGQGKKNIY---LANNK 131
Query: 532 IVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPS 591
I LR ++ LDL N++ D N +S Y
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEI-----DTVNFAELAASSDTLEHLNLQYNFIYDVKG 186
Query: 592 SFTIHSKLKTLKLAFNKFNYFPKEL--ILGLSYLQEIDLSNNQLKTID 637
+ +KLKTL L+ NK + E G+++ I L NN+L I+
Sbjct: 187 Q-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTW---ISLRNNKLVLIE 230
>pdb|4EGS|A Chain A, Crystal Structure Analysis Of Low Molecular Weight Protein
Tyrosine Phosphatase From T. Tengcongensis
pdb|4EGS|B Chain B, Crystal Structure Analysis Of Low Molecular Weight Protein
Tyrosine Phosphatase From T. Tengcongensis
Length = 180
Score = 29.3 bits (64), Expect = 9.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNR 253
+D+SD++ K++ E LKG D +L + H R
Sbjct: 95 IDISDHRAKSLREEDLKGADLVLAMAFSHKR 125
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 295 IILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
++L GN LT++ GAF+ L ++ +LG N
Sbjct: 35 LVLTGNNLTSVPPGAFDHLPQLRTAHLGAN 64
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 129 NGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHR 188
+GE+ L +NL + W G + LP I + ++ + L + L L + H
Sbjct: 176 SGEHQGL---VNLQSLRLEWTGIRSLPASIANLQNL--KSLKIRNSPLSALGPAIH--HL 228
Query: 189 DTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELR 248
L+EL L + PIF G L+ L ILK C NLL L
Sbjct: 229 PKLEELDLRGCTALRNYPPIFG-----GRAPLKRL-------------ILKDCSNLLTLP 270
Query: 249 MDHNRFTSIPSVSLNG 264
+D +R T + + L G
Sbjct: 271 LDIHRLTQLEKLDLRG 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,477,864
Number of Sequences: 62578
Number of extensions: 844847
Number of successful extensions: 3597
Number of sequences better than 100.0: 135
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1791
Number of HSP's gapped (non-prelim): 784
length of query: 719
length of database: 14,973,337
effective HSP length: 106
effective length of query: 613
effective length of database: 8,340,069
effective search space: 5112462297
effective search space used: 5112462297
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)