Query psy16110
Match_columns 719
No_of_seqs 617 out of 4426
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 21:09:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ziw_A TOLL-like receptor 3; i 100.0 2.7E-59 9.3E-64 541.7 53.0 561 118-717 7-626 (680)
2 3t6q_A CD180 antigen; protein- 100.0 1.2E-57 4E-62 520.9 46.6 542 104-717 4-564 (606)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-56 4.7E-61 519.0 52.3 535 146-707 11-599 (680)
4 3rgz_A Protein brassinosteroid 100.0 3.5E-58 1.2E-62 537.3 34.7 536 148-706 86-718 (768)
5 3vq2_A TLR4, TOLL-like recepto 100.0 5.1E-56 1.8E-60 507.3 40.5 508 165-717 33-562 (606)
6 3rgz_A Protein brassinosteroid 100.0 1.5E-54 5.1E-59 506.7 35.5 525 164-706 77-694 (768)
7 3t6q_A CD180 antigen; protein- 100.0 1.3E-52 4.6E-57 479.1 42.7 515 143-683 37-561 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 5.9E-53 2E-57 498.2 39.5 509 165-718 25-565 (844)
9 2z63_A TOLL-like receptor 4, v 100.0 1.8E-51 6.1E-56 466.4 35.6 491 165-704 29-530 (570)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1E-50 3.4E-55 463.6 40.1 505 166-708 13-537 (606)
11 4g8a_A TOLL-like receptor 4; l 100.0 7.2E-50 2.5E-54 459.2 40.5 530 117-717 33-584 (635)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-49 5.6E-54 468.8 36.0 505 167-708 7-542 (844)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-48 5E-53 440.3 35.5 482 169-717 10-514 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-47 7.2E-52 430.8 32.6 460 165-683 27-511 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 1.3E-45 4.6E-50 418.2 34.0 518 107-683 2-532 (570)
16 2z7x_B TOLL-like receptor 1, v 100.0 8.1E-45 2.8E-49 406.7 26.8 461 167-683 3-482 (520)
17 2z7x_B TOLL-like receptor 1, v 100.0 7.3E-45 2.5E-49 407.1 22.0 453 192-717 3-485 (520)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.3E-43 1.1E-47 397.1 30.5 457 166-682 33-510 (562)
19 4g8a_A TOLL-like receptor 4; l 100.0 3.1E-42 1E-46 395.7 36.2 516 135-683 50-581 (635)
20 4ecn_A Leucine-rich repeat pro 100.0 3.7E-42 1.3E-46 399.1 30.6 296 379-704 549-863 (876)
21 4eco_A Uncharacterized protein 100.0 2.6E-42 8.9E-47 394.1 28.0 440 165-636 82-602 (636)
22 4ecn_A Leucine-rich repeat pro 100.0 2.4E-42 8.3E-47 400.6 26.7 444 165-637 324-843 (876)
23 4eco_A Uncharacterized protein 100.0 1.7E-41 5.7E-46 387.4 30.2 443 189-685 81-603 (636)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-41 3.8E-46 384.6 26.3 439 165-660 53-512 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 4.9E-39 1.7E-43 353.7 32.8 368 165-590 31-412 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 7.9E-39 2.7E-43 352.0 34.0 382 246-704 14-407 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 5.3E-38 1.8E-42 343.0 30.5 407 211-704 5-428 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 1.7E-37 5.7E-42 339.0 29.3 407 164-683 11-430 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 3.1E-37 1.1E-41 341.3 30.3 323 380-717 13-337 (477)
30 2id5_A Lingo-1, leucine rich r 100.0 2.2E-36 7.5E-41 334.5 29.6 333 103-534 2-334 (477)
31 1o6v_A Internalin A; bacterial 100.0 3.1E-35 1.1E-39 323.8 34.5 343 165-558 47-389 (466)
32 1o6v_A Internalin A; bacterial 100.0 1.9E-35 6.3E-40 325.6 31.5 302 187-558 44-345 (466)
33 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-35 3.9E-40 324.8 28.1 355 211-662 35-391 (457)
34 3bz5_A Internalin-J, INLJ; leu 100.0 5.7E-35 1.9E-39 319.3 29.6 365 186-651 39-405 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 4.4E-34 1.5E-38 307.3 27.1 306 377-706 44-353 (390)
36 3o6n_A APL1; leucine-rich repe 100.0 1.8E-33 6.1E-38 302.6 27.7 308 165-534 46-353 (390)
37 4fmz_A Internalin; leucine ric 100.0 5.1E-33 1.8E-37 294.1 29.8 304 376-705 42-346 (347)
38 4fmz_A Internalin; leucine ric 100.0 1.7E-32 5.7E-37 290.2 30.0 304 187-556 42-345 (347)
39 3oja_B Anopheles plasmodium-re 100.0 7.3E-33 2.5E-37 314.2 27.5 305 377-705 50-358 (597)
40 1xku_A Decorin; proteoglycan, 100.0 5.3E-32 1.8E-36 284.1 31.2 288 401-703 32-330 (330)
41 3oja_B Anopheles plasmodium-re 100.0 3.4E-32 1.1E-36 308.8 28.3 308 165-534 52-359 (597)
42 2ft3_A Biglycan; proteoglycan, 100.0 3.8E-32 1.3E-36 285.4 25.7 287 401-703 34-331 (332)
43 1xku_A Decorin; proteoglycan, 100.0 1.3E-30 4.5E-35 273.5 30.2 288 379-680 32-330 (330)
44 2ft3_A Biglycan; proteoglycan, 100.0 1.4E-30 4.9E-35 273.4 26.7 287 379-680 34-331 (332)
45 3zyj_A Leucine-rich repeat-con 100.0 1.7E-29 5.8E-34 275.9 27.3 251 449-718 45-297 (440)
46 3zyi_A Leucine-rich repeat-con 100.0 3E-29 1E-33 274.9 26.3 250 450-718 57-308 (452)
47 2z80_A TOLL-like receptor 2, v 100.0 4.1E-30 1.4E-34 272.3 18.5 279 422-717 30-318 (353)
48 1z7x_W Ribonuclease inhibitor; 100.0 5.5E-33 1.9E-37 305.9 -7.3 393 266-684 3-442 (461)
49 1z7x_W Ribonuclease inhibitor; 100.0 4.7E-33 1.6E-37 306.4 -10.5 374 189-610 3-411 (461)
50 2z66_A Variable lymphocyte rec 100.0 1.4E-28 4.8E-33 255.2 21.7 247 426-682 10-261 (306)
51 1ozn_A Reticulon 4 receptor; N 100.0 6.5E-28 2.2E-32 247.4 26.0 227 475-717 14-242 (285)
52 2z80_A TOLL-like receptor 2, v 100.0 1.4E-28 4.9E-33 260.5 16.4 274 405-686 36-318 (353)
53 1ozn_A Reticulon 4 receptor; N 100.0 4.7E-28 1.6E-32 248.4 19.6 238 104-393 2-240 (285)
54 3zyj_A Leucine-rich repeat-con 100.0 3.6E-27 1.2E-31 257.5 27.3 247 402-658 45-292 (440)
55 3zyi_A Leucine-rich repeat-con 100.0 4.6E-27 1.6E-31 257.6 27.0 247 402-658 56-303 (452)
56 2z66_A Variable lymphocyte rec 100.0 2E-27 6.7E-32 246.5 21.6 280 403-691 10-296 (306)
57 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-28 6.1E-33 254.8 12.9 252 423-707 50-306 (313)
58 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-28 6.3E-33 254.7 12.5 247 400-656 50-302 (313)
59 3g06_A SSPH2 (leucine-rich rep 99.9 6.6E-26 2.2E-30 254.8 29.6 267 379-692 41-307 (622)
60 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-25 4.8E-30 252.1 30.8 258 400-706 40-298 (622)
61 2o6q_A Variable lymphocyte rec 99.9 8.8E-26 3E-30 229.4 23.5 204 498-717 18-222 (270)
62 2z62_A TOLL-like receptor 4, v 99.9 6.1E-26 2.1E-30 231.5 20.9 215 459-682 18-237 (276)
63 3o53_A Protein LRIM1, AGAP0063 99.9 4.8E-27 1.7E-31 244.6 11.9 266 424-709 11-279 (317)
64 3o53_A Protein LRIM1, AGAP0063 99.9 1E-27 3.5E-32 249.7 5.1 260 401-679 11-272 (317)
65 1p9a_G Platelet glycoprotein I 99.9 3.3E-25 1.1E-29 227.1 21.5 198 495-704 9-207 (290)
66 3ogk_B Coronatine-insensitive 99.9 9.6E-29 3.3E-33 281.0 -6.2 385 264-660 110-528 (592)
67 3ogk_B Coronatine-insensitive 99.9 7.5E-28 2.6E-32 273.7 -1.2 398 287-701 109-547 (592)
68 2z62_A TOLL-like receptor 4, v 99.9 2E-24 7E-29 220.2 21.8 225 476-717 11-241 (276)
69 2o6q_A Variable lymphocyte rec 99.9 4.1E-24 1.4E-28 217.1 23.7 203 473-683 17-219 (270)
70 1wwl_A Monocyte differentiatio 99.9 9.1E-27 3.1E-31 241.9 4.2 246 444-705 40-309 (312)
71 3oja_A Leucine-rich immune mol 99.9 3.4E-25 1.2E-29 244.1 16.3 235 446-700 33-270 (487)
72 4fcg_A Uncharacterized protein 99.9 1.2E-24 4.1E-29 227.3 18.3 206 471-685 103-317 (328)
73 3oja_A Leucine-rich immune mol 99.9 7.9E-26 2.7E-30 249.1 9.2 237 422-677 33-270 (487)
74 2xwt_C Thyrotropin receptor; s 99.9 1.5E-24 5.3E-29 216.0 16.6 196 165-388 32-236 (239)
75 4fcg_A Uncharacterized protein 99.9 2.9E-24 9.8E-29 224.4 17.6 230 471-706 80-315 (328)
76 1wwl_A Monocyte differentiatio 99.9 8.3E-26 2.8E-30 234.7 5.4 206 446-683 94-310 (312)
77 1p9a_G Platelet glycoprotein I 99.9 5.7E-23 1.9E-27 210.5 22.9 204 468-683 6-209 (290)
78 2p1m_B Transport inhibitor res 99.9 1.1E-27 3.9E-32 272.3 -14.3 33 191-229 45-77 (594)
79 4ay9_X Follicle-stimulating ho 99.9 2.5E-23 8.7E-28 219.6 19.2 247 104-408 2-254 (350)
80 2p1m_B Transport inhibitor res 99.9 5.7E-27 2E-31 266.5 -11.5 178 221-408 46-243 (594)
81 2xwt_C Thyrotropin receptor; s 99.9 2.6E-23 8.9E-28 207.1 16.4 196 473-679 32-236 (239)
82 3rfs_A Internalin B, repeat mo 99.9 1.6E-23 5.5E-28 212.8 14.5 206 444-666 38-243 (272)
83 3m19_A Variable lymphocyte rec 99.9 2.5E-22 8.7E-27 201.4 20.6 181 496-684 14-194 (251)
84 3rfs_A Internalin B, repeat mo 99.9 1.4E-22 4.8E-27 205.9 17.5 212 468-695 37-248 (272)
85 1h6u_A Internalin H; cell adhe 99.9 1.9E-22 6.3E-27 208.8 16.1 210 429-662 25-234 (308)
86 3m19_A Variable lymphocyte rec 99.9 1.6E-21 5.6E-26 195.5 20.5 181 472-660 14-194 (251)
87 1h6u_A Internalin H; cell adhe 99.9 5.6E-22 1.9E-26 205.1 17.6 201 468-689 37-237 (308)
88 4ay9_X Follicle-stimulating ho 99.9 2.5E-22 8.4E-27 212.0 14.0 240 403-655 12-256 (350)
89 3goz_A Leucine-rich repeat-con 99.9 1.4E-23 4.6E-28 222.8 3.0 254 428-683 3-298 (362)
90 4glp_A Monocyte differentiatio 99.9 1.8E-22 6.1E-27 209.4 11.4 202 495-706 90-308 (310)
91 3goz_A Leucine-rich repeat-con 99.9 2E-23 6.8E-28 221.5 3.0 254 451-706 2-298 (362)
92 2v9t_B SLIT homolog 2 protein 99.9 7.4E-21 2.5E-25 186.4 17.1 155 547-717 14-169 (220)
93 4glp_A Monocyte differentiatio 99.9 1.2E-21 4.1E-26 203.1 11.8 201 447-657 91-306 (310)
94 2xot_A Amphoterin-induced prot 99.8 1.1E-20 3.9E-25 200.0 17.5 161 545-717 40-206 (361)
95 2v70_A SLIT-2, SLIT homolog 2 99.8 1.8E-20 6.2E-25 183.6 16.6 150 547-704 14-165 (220)
96 2xot_A Amphoterin-induced prot 99.8 1E-20 3.5E-25 200.4 14.4 187 103-327 11-202 (361)
97 2o6s_A Variable lymphocyte rec 99.8 3.2E-20 1.1E-24 180.5 15.6 182 104-331 1-182 (208)
98 2v9t_B SLIT homolog 2 protein 99.8 7.6E-20 2.6E-24 179.1 17.1 162 103-303 4-165 (220)
99 3cvr_A Invasion plasmid antige 99.8 8.2E-20 2.8E-24 202.7 19.2 210 473-717 60-284 (571)
100 3e6j_A Variable lymphocyte rec 99.8 9.7E-20 3.3E-24 179.6 17.4 150 546-704 21-171 (229)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 8.1E-20 2.8E-24 178.9 16.2 132 166-303 34-166 (220)
102 2ca6_A RAN GTPase-activating p 99.8 5.7E-22 1.9E-26 212.4 0.5 260 440-701 25-339 (386)
103 2ca6_A RAN GTPase-activating p 99.8 4E-22 1.4E-26 213.6 -1.6 240 422-662 31-320 (386)
104 2ast_B S-phase kinase-associat 99.8 2.6E-21 9E-26 203.1 2.7 106 447-554 70-178 (336)
105 2o6s_A Variable lymphocyte rec 99.8 5.5E-19 1.9E-23 171.6 18.5 168 523-705 10-178 (208)
106 4fdw_A Leucine rich hypothetic 99.8 1.1E-18 3.7E-23 186.3 21.5 263 423-704 113-382 (401)
107 3sb4_A Hypothetical leucine ri 99.8 9.5E-21 3.2E-25 198.1 5.3 264 422-699 48-328 (329)
108 1h6t_A Internalin B; cell adhe 99.8 1.6E-19 5.5E-24 184.9 14.2 174 469-661 43-216 (291)
109 3cvr_A Invasion plasmid antige 99.8 1.1E-18 3.6E-23 193.8 20.5 177 497-706 60-244 (571)
110 2ast_B S-phase kinase-associat 99.8 1.6E-20 5.5E-25 197.1 3.8 232 400-666 70-314 (336)
111 4fs7_A Uncharacterized protein 99.8 6.2E-18 2.1E-22 181.3 23.6 136 175-322 58-193 (394)
112 3sb4_A Hypothetical leucine ri 99.8 5.5E-20 1.9E-24 192.2 6.7 266 399-676 48-328 (329)
113 1h6t_A Internalin B; cell adhe 99.8 7.8E-19 2.7E-23 179.8 14.6 201 473-694 25-225 (291)
114 4fdw_A Leucine rich hypothetic 99.8 1.1E-17 3.8E-22 178.5 22.3 254 412-682 124-383 (401)
115 4fs7_A Uncharacterized protein 99.8 1E-17 3.5E-22 179.6 22.1 312 211-554 64-376 (394)
116 3e6j_A Variable lymphocyte rec 99.8 4.3E-18 1.5E-22 167.8 17.4 153 166-328 21-173 (229)
117 1m9s_A Internalin B; cell inva 99.8 1.5E-18 5E-23 194.8 13.6 174 469-661 40-213 (605)
118 2wfh_A SLIT homolog 2 protein 99.7 2.1E-17 7.3E-22 158.0 14.8 130 576-717 13-143 (193)
119 1m9s_A Internalin B; cell inva 99.7 9.7E-18 3.3E-22 188.2 14.3 192 428-641 26-217 (605)
120 1xeu_A Internalin C; cellular 99.7 5.8E-18 2E-22 170.5 10.7 172 471-662 18-189 (263)
121 1xeu_A Internalin C; cellular 99.7 3.2E-18 1.1E-22 172.5 8.4 176 495-690 18-193 (263)
122 4gt6_A Cell surface protein; l 99.7 5.9E-16 2E-20 165.9 24.8 334 176-554 51-388 (394)
123 1w8a_A SLIT protein; signaling 99.7 5.2E-17 1.8E-21 155.3 13.3 129 547-683 11-140 (192)
124 4ezg_A Putative uncharacterize 99.7 3.9E-17 1.3E-21 157.0 11.6 150 520-682 44-194 (197)
125 4ezg_A Putative uncharacterize 99.7 6.5E-17 2.2E-21 155.4 11.6 154 493-659 41-195 (197)
126 2o6r_A Variable lymphocyte rec 99.7 3.7E-16 1.3E-20 147.3 14.8 133 546-686 9-141 (177)
127 4gt6_A Cell surface protein; l 99.7 3.5E-15 1.2E-19 159.8 23.0 309 209-554 54-367 (394)
128 1w8a_A SLIT protein; signaling 99.7 5.9E-16 2E-20 147.9 15.1 132 523-662 11-143 (192)
129 1dce_A Protein (RAB geranylger 99.7 3E-19 1E-23 199.3 -10.8 201 471-699 348-567 (567)
130 2o6r_A Variable lymphocyte rec 99.7 1.2E-15 4.2E-20 143.7 15.7 127 575-704 9-136 (177)
131 2wfh_A SLIT homolog 2 protein 99.7 1E-15 3.4E-20 146.3 14.6 128 547-683 13-140 (193)
132 2ell_A Acidic leucine-rich nuc 99.6 4.9E-16 1.7E-20 145.1 8.9 134 544-685 24-163 (168)
133 1dce_A Protein (RAB geranylger 99.6 9.4E-19 3.2E-23 195.3 -12.7 216 421-676 347-567 (567)
134 2ell_A Acidic leucine-rich nuc 99.6 1.6E-15 5.5E-20 141.6 10.3 137 519-662 23-164 (168)
135 4h09_A Hypothetical leucine ri 99.6 1.2E-13 4.2E-18 147.1 24.8 138 422-565 216-353 (379)
136 2je0_A Acidic leucine-rich nuc 99.6 1.3E-15 4.6E-20 139.1 7.8 126 573-700 17-148 (149)
137 4b8c_D Glucose-repressible alc 99.6 4.7E-16 1.6E-20 179.0 3.5 119 466-593 218-336 (727)
138 4b8c_D Glucose-repressible alc 99.6 4E-16 1.4E-20 179.6 2.6 151 514-679 218-369 (727)
139 3g39_A Variable lymphocyte rec 99.6 1.1E-14 3.7E-19 136.0 11.6 109 574-685 10-118 (170)
140 1a9n_A U2A', U2A'; complex (nu 99.6 4.2E-15 1.5E-19 139.9 8.0 136 539-682 14-153 (176)
141 2je0_A Acidic leucine-rich nuc 99.6 7.3E-15 2.5E-19 134.1 8.9 111 520-637 17-129 (149)
142 4h09_A Hypothetical leucine ri 99.5 5E-13 1.7E-17 142.3 23.7 317 213-598 41-357 (379)
143 2r9u_A Variable lymphocyte rec 99.5 2.4E-14 8.1E-19 134.2 11.6 109 575-686 14-122 (174)
144 1a9n_A U2A', U2A'; complex (nu 99.5 7.5E-15 2.6E-19 138.2 7.7 129 573-704 19-152 (176)
145 3g39_A Variable lymphocyte rec 99.5 2.3E-13 7.8E-18 127.0 13.2 108 546-661 11-118 (170)
146 2r9u_A Variable lymphocyte rec 99.5 3.2E-13 1.1E-17 126.4 13.3 109 546-662 14-122 (174)
147 2ifg_A High affinity nerve gro 99.4 7.6E-13 2.6E-17 139.1 10.4 106 577-685 12-119 (347)
148 1ds9_A Outer arm dynein; leuci 99.4 1E-15 3.5E-20 147.1 -12.7 41 516-558 44-84 (198)
149 3un9_A NLR family member X1; l 99.3 5.6E-14 1.9E-18 148.3 -4.2 116 574-689 127-259 (372)
150 1ds9_A Outer arm dynein; leuci 99.3 1.1E-14 3.7E-19 139.9 -9.1 152 519-682 17-185 (198)
151 2ifg_A High affinity nerve gro 99.3 9.7E-12 3.3E-16 130.6 10.7 105 548-660 12-118 (347)
152 3un9_A NLR family member X1; l 99.2 5.2E-13 1.8E-17 140.9 -1.9 134 573-706 101-253 (372)
153 2ra8_A Uncharacterized protein 98.6 8.9E-09 3E-13 107.5 3.0 84 619-703 250-341 (362)
154 2ra8_A Uncharacterized protein 98.6 2.6E-08 9E-13 104.0 3.9 59 491-552 167-227 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 6.1E-08 2.1E-12 91.2 1.5 89 594-682 62-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.3 1.1E-07 3.8E-12 89.4 2.2 116 590-705 29-164 (185)
157 3e4g_A ATP synthase subunit S, 98.0 1.1E-06 3.7E-11 80.6 1.6 34 646-679 115-149 (176)
158 3rfe_A Platelet glycoprotein I 98.0 7E-06 2.4E-10 71.8 6.4 59 648-717 11-72 (130)
159 3rw6_A Nuclear RNA export fact 98.0 5.4E-07 1.9E-11 89.1 -1.4 80 618-698 167-257 (267)
160 3e4g_A ATP synthase subunit S, 97.9 1.6E-06 5.4E-11 79.4 0.7 87 573-659 61-154 (176)
161 3rw6_A Nuclear RNA export fact 97.9 9E-06 3.1E-10 80.3 5.4 62 573-635 170-234 (267)
162 3rfe_A Platelet glycoprotein I 97.5 0.00012 4E-09 63.9 6.2 66 104-201 2-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.5 0.00011 3.8E-09 68.5 5.7 83 573-655 41-136 (197)
164 1pgv_A TMD-1, tropomodulin TMD 97.3 5.8E-05 2E-09 70.4 1.4 39 314-353 98-136 (197)
165 2lz0_A Uncharacterized protein 89.1 0.84 2.9E-05 37.0 6.4 44 230-274 8-51 (100)
166 2lz0_A Uncharacterized protein 86.3 1.4 4.9E-05 35.6 6.1 48 433-482 6-53 (100)
167 3d24_B Peroxisome proliferator 23.7 11 0.00039 21.4 -0.7 14 20-33 4-17 (26)
168 1pqr_A Alpha-A-conotoxin EIVA; 23.1 21 0.00071 20.5 0.3 25 26-54 3-27 (31)
No 1
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.7e-59 Score=541.66 Aligned_cols=561 Identities=25% Similarity=0.339 Sum_probs=393.9
Q ss_pred ccccccccccCCCCCCCCCCCC--chhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCcccccchhccccEEE
Q psy16110 118 LAMDCDNVAFPNGEYPTLPYGL--NLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELR 195 (719)
Q Consensus 118 ~~~~c~~~~l~~~~~~~~p~~~--~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~ 195 (719)
..++|.+..++ ++|..+ .+..+.+..++++.+|...|... .+|++|+|++|.++.++...|. .+++|++|+
T Consensus 7 ~~~~cs~~~L~-----~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~ 79 (680)
T 1ziw_A 7 EVADCSHLKLT-----QVPDDLPTNITVLNLTHNQLRRLPAANFTRY-SQLTSLDVGFNTISKLEPELCQ-KLPMLKVLN 79 (680)
T ss_dssp SEEECCSSCCS-----SCCSCSCTTCSEEECCSSCCCCCCGGGGGGG-TTCSEEECCSSCCCCCCTTHHH-HCTTCCEEE
T ss_pred CeeECCCCCcc-----ccccccCCCCcEEECCCCCCCCcCHHHHhCC-CcCcEEECCCCccCccCHHHHh-cccCcCEEE
Confidence 46899887776 333332 12333344444555555444433 3456666666655555554443 445566666
Q ss_pred cCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCC
Q psy16110 196 LADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAY 275 (719)
Q Consensus 196 Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~ 275 (719)
|++|.+++ +.+.+|+++++|++|+|++|++..+++..|+++++|++|++++|.++.+++..++++++|++|++++
T Consensus 80 L~~n~l~~-----l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 80 LQHNELSQ-----LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154 (680)
T ss_dssp CCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred CCCCccCc-----cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence 66555553 2223455556666666666655555555555556666666666655555544555555666666666
Q ss_pred CcCcccCCCccc--CCCccCEEEccCCCCcccCcccccCccc---------------------------CcEEEcCCCCC
Q psy16110 276 NRIGTLKADSFL--SQRWLERIILRGNRLTTIEGGAFNGLAK---------------------------IHILNLGYNRL 326 (719)
Q Consensus 276 n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~---------------------------L~~L~L~~n~l 326 (719)
|.++.+.+..+. .+++|++|++++|.++++.+..|..+.+ |++|++++|.+
T Consensus 155 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l 234 (680)
T 1ziw_A 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234 (680)
T ss_dssp SCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC
T ss_pred CcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc
Confidence 655555444332 3355566666666555555554443332 33333334433
Q ss_pred CCcCCCccccccccCCC--CCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCC--cchhccC
Q psy16110 327 NKLNSDTFQGGAFNGLA--KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES--TGLEDTL 402 (719)
Q Consensus 327 ~~~~~~~~~~~~l~~l~--~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~--~~~~~~L 402 (719)
+++.+.. +..++ +|++|++++|+++.+. +..+..+++|++|++++|.+..+.+ +..+++|
T Consensus 235 ~~~~~~~-----~~~l~~~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (680)
T 1ziw_A 235 STTSNTT-----FLGLKWTNLTMLDLSYNNLNVVG-----------NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298 (680)
T ss_dssp CEECTTT-----TGGGGGSCCCEEECTTSCCCEEC-----------TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTC
T ss_pred cccChhH-----hhccCcCCCCEEECCCCCcCccC-----------cccccCcccccEeeCCCCccCccChhhhcCCCCc
Confidence 3333322 22222 2555555555544332 3345567788888888887776654 4556778
Q ss_pred CEEEccCCccc---------cccc-CccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCC-CCCCCCCCCCCC
Q psy16110 403 DNLNVRDNQIT---------TLSS-SALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAH-LSSLPVGGFDPL 471 (719)
Q Consensus 403 ~~L~l~~n~l~---------~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~-l~~l~~~~~~~l 471 (719)
+.|++++|... .+.. ....+++|+.|++++|.+.++.+..|.++++|++|++++|.. +..++...|..+
T Consensus 299 ~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~ 378 (680)
T 1ziw_A 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378 (680)
T ss_dssp CEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG
T ss_pred cEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccc
Confidence 88888776433 2222 223478899999999999888888888899999999988832 344555545433
Q ss_pred --CCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCC-CCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCE
Q psy16110 472 --KKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKR 548 (719)
Q Consensus 472 --~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 548 (719)
++|+.|++++|+++++.+..|..+++|++|++++|.+. .++...|..+++|++|++++|++.++.+..|..+++|++
T Consensus 379 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~ 458 (680)
T 1ziw_A 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458 (680)
T ss_dssp TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCE
T ss_pred ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccccc
Confidence 58999999999999988888999999999999999987 466677889999999999999999988889999999999
Q ss_pred EEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcCh--------hhhcCC
Q psy16110 549 LDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPK--------ELILGL 620 (719)
Q Consensus 549 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~l~~l 620 (719)
|++++|.+..+... ...+..+++|++|++++|+++++.+..|..+++|++|++++|+++.++. ..+.++
T Consensus 459 L~l~~n~l~~~~~~---p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l 535 (680)
T 1ziw_A 459 LMLRRVALKNVDSS---PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535 (680)
T ss_dssp EECTTSCCBCTTCS---SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTC
T ss_pred chhccccccccccC---CcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCC
Confidence 99999988643211 1223457999999999999999988899999999999999999987633 237889
Q ss_pred CCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhc-Ccccc-EEe
Q psy16110 621 SYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN-TFLYT-NYD 698 (719)
Q Consensus 621 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~-~l~~L-~L~ 698 (719)
++|++|++++|+++.+++..|.++++|++|++++|+++++++..|..+++|+.|++++|+++.+++..|. .+++| .++
T Consensus 536 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~ 615 (680)
T 1ziw_A 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 615 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEE
T ss_pred CCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEE
Confidence 9999999999999999988899999999999999999999999999999999999999999999999888 78999 999
Q ss_pred cCCCceeeeccCCCccccC
Q psy16110 699 MAPNLVFQSHLSGHRCECA 717 (719)
Q Consensus 699 l~~N~l~~~~~~~~~C~c~ 717 (719)
+++||+ .|+|+
T Consensus 616 l~~N~~--------~c~c~ 626 (680)
T 1ziw_A 616 MRFNPF--------DCTCE 626 (680)
T ss_dssp CTTCCC--------CBCCC
T ss_pred ccCCCc--------ccCCc
Confidence 999999 89997
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-57 Score=520.90 Aligned_cols=542 Identities=22% Similarity=0.282 Sum_probs=447.3
Q ss_pred CCcccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCccc
Q psy16110 104 FPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKL 183 (719)
Q Consensus 104 ~~~~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~ 183 (719)
++..|.|... ...++|.+..++ .+|.. +. .++++|+|++|.|+.++...
T Consensus 4 ~~~~C~~~~~---~~~~~c~~~~l~-----~iP~~-------------------l~----~~l~~L~Ls~n~i~~~~~~~ 52 (606)
T 3t6q_A 4 SDQKCIEKEV---NKTYNCENLGLN-----EIPGT-------------------LP----NSTECLEFSFNVLPTIQNTT 52 (606)
T ss_dssp --CCCEEEET---TTEEECTTSCCS-----SCCTT-------------------SC----TTCCEEECTTCCCSEECTTT
T ss_pred ccCceecccC---CceEECCCCCcc-----cCcCC-------------------CC----CcCcEEEccCCccCcCChhH
Confidence 3456777632 357899886665 34433 21 25999999999999998888
Q ss_pred ccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCC
Q psy16110 184 FSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLN 263 (719)
Q Consensus 184 f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~ 263 (719)
|. .+++|++|+|++|.+.+. .+.+|+++++|++|+|++|++..+.+..|+++++|++|++++|.++.+++..++
T Consensus 53 ~~-~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~ 126 (606)
T 3t6q_A 53 FS-RLINLTFLDLTRCQIYWI-----HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126 (606)
T ss_dssp ST-TCTTCSEEECTTCCCCEE-----CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCT
T ss_pred hc-cCccceEEECCCCcccee-----ChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhc
Confidence 85 779999999999999873 446899999999999999999999888999999999999999999998777899
Q ss_pred CCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCc--EEEcCCCCCCCcCCCccccccccC
Q psy16110 264 GPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIH--ILNLGYNRLNKLNSDTFQGGAFNG 341 (719)
Q Consensus 264 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~~~l~~ 341 (719)
++++|++|++++|.++.+....+..+++|++|++++|.++++.+..|+.+++|+ +|++++|.++.+++..|.
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~------ 200 (606)
T 3t6q_A 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD------ 200 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT------
T ss_pred cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh------
Confidence 999999999999999998766677799999999999999999999999999999 999999999998886443
Q ss_pred CCCCCEEeCCCCCCCccccccccCcccccccccccCCCcc--EEECCCC---CCcCcCC--cchh--ccCCEEEccCCcc
Q psy16110 342 LAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLK--SLDLNGN---FLINLES--TGLE--DTLDNLNVRDNQI 412 (719)
Q Consensus 342 l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~--~L~L~~n---~l~~~~~--~~~~--~~L~~L~l~~n~l 412 (719)
..+|+.|++++|.. ++..+..+.+++ .+.+... ....++. .... ..|+.|++++|.+
T Consensus 201 ~~~L~~L~l~~~~~--------------~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 201 SAVFQSLNFGGTQN--------------LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp TCEEEEEECTTCSC--------------HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred hccccccccCCchh--------------HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 36899999998862 112222233332 3333221 1111111 1111 2688889999988
Q ss_pred cccccCccC-CCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCC-CCCch
Q psy16110 413 TTLSSSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK-SIPQY 490 (719)
Q Consensus 413 ~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~-~~~~~ 490 (719)
+++++..+. +++|+.|++++|.++.++. .+.++++|++|++++| .+..+++..+..+++|+.|++++|.+. .++..
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS
T ss_pred CccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchh
Confidence 888776554 8889999999998887754 5788899999999998 777776666888899999999999877 56666
Q ss_pred hhcCCCCccEEEccCCcCCCCC--hhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCC
Q psy16110 491 QFDELLNLKYLCLAHNHLTEIP--EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKS 568 (719)
Q Consensus 491 ~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 568 (719)
.+..+++|++|++++|.++.+. +..+..+++|++|++++|++.+..+..+..+++|++|++++|+++...+.. .
T Consensus 345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~ 420 (606)
T 3t6q_A 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS----P 420 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC----T
T ss_pred hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch----h
Confidence 7888999999999999988765 556788999999999999999988889999999999999999987654322 1
Q ss_pred CCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCc---ChhhhcCCCCCCEEECCCCCCcccCcccCCCCC
Q psy16110 569 KPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYF---PKELILGLSYLQEIDLSNNQLKTIDDYDYGYLP 645 (719)
Q Consensus 569 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 645 (719)
+..+++|++|++++|.+++..+..+..+++|++|++++|++++. .+..+..+++|++|++++|+++++++..|.+++
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 500 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc
Confidence 23469999999999999999899999999999999999999862 225688899999999999999999888999999
Q ss_pred CCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeeeccCCCccccC
Q psy16110 646 RLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHLSGHRCECA 717 (719)
Q Consensus 646 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~~~~~C~c~ 717 (719)
+|++|++++|++++.++..|.++++| +|++++|+++.+++..|..+++| .+++++||+ .|+|+
T Consensus 501 ~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~c~c~ 564 (606)
T 3t6q_A 501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL--------DCTCS 564 (606)
T ss_dssp TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE--------ECSGG
T ss_pred CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc--------cccCC
Confidence 99999999999999999999999999 99999999999999999999999 999999999 88886
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-56 Score=519.00 Aligned_cols=535 Identities=24% Similarity=0.323 Sum_probs=440.2
Q ss_pred cccccCCcCccccccCCCCcccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEEC
Q psy16110 146 QRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225 (719)
Q Consensus 146 ~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~L 225 (719)
....+++.+|..+. .++++|+|++|.++.++...|. .+++|++|+|++|.+.+. .+.+|+++++|++|+|
T Consensus 11 cs~~~L~~ip~~~~----~~l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L 80 (680)
T 1ziw_A 11 CSHLKLTQVPDDLP----TNITVLNLTHNQLRRLPAANFT-RYSQLTSLDVGFNTISKL-----EPELCQKLPMLKVLNL 80 (680)
T ss_dssp CCSSCCSSCCSCSC----TTCSEEECCSSCCCCCCGGGGG-GGTTCSEEECCSSCCCCC-----CTTHHHHCTTCCEEEC
T ss_pred CCCCCccccccccC----CCCcEEECCCCCCCCcCHHHHh-CCCcCcEEECCCCccCcc-----CHHHHhcccCcCEEEC
Confidence 34556788997654 3699999999999999998885 679999999999999874 3468999999999999
Q ss_pred cCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCccc
Q psy16110 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI 305 (719)
Q Consensus 226 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 305 (719)
++|+++.+++..|+++++|++|++++|.++.+++.+++++++|++|++++|.++...+..+..+++|++|++++|.++++
T Consensus 81 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 99999999998899999999999999999999988899999999999999999999888999999999999999999998
Q ss_pred Cccccc--CcccCcEEEcCCCCCCCcCCCcccccc-c---------------------cCCCCCCEEeCCCCCCCccccc
Q psy16110 306 EGGAFN--GLAKIHILNLGYNRLNKLNSDTFQGGA-F---------------------NGLAKIHILNLGYNRLNKLNSD 361 (719)
Q Consensus 306 ~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~-l---------------------~~l~~L~~L~L~~n~l~~i~~~ 361 (719)
.+..+. .+++|++|++++|.++++.+..+.... + ...++|+.|++++|.++.+..
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~- 239 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN- 239 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT-
T ss_pred CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccCh-
Confidence 877664 568999999999999988776443110 0 011455666666665544333
Q ss_pred cccCcccccccccccCC--CccEEECCCCCCcCcCC--cchhccCCEEEccCCcccccccCcc-CCCCccEEEccCCCCC
Q psy16110 362 TFQGTHITIFSFFQDFQ--KLKSLDLNGNFLINLES--TGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLK 436 (719)
Q Consensus 362 ~f~~~~~~~~~~l~~~~--~L~~L~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~ 436 (719)
..+..++ +|++|++++|.++.+++ +..+++|++|++++|.+.++.+..+ .+++|+.|++++|...
T Consensus 240 ----------~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~ 309 (680)
T 1ziw_A 240 ----------TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309 (680)
T ss_dssp ----------TTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred ----------hHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhh
Confidence 2333343 48888888888877654 4556788888888888887765444 4788888888876433
Q ss_pred ---------CcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCC--CCCCchhhcCC--CCccEEEc
Q psy16110 437 ---------ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL--KSIPQYQFDEL--LNLKYLCL 503 (719)
Q Consensus 437 ---------~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l--~~~~~~~~~~~--~~L~~L~L 503 (719)
.+....|..+++|++|++++| .+..++...|..+++|++|++++|.+ ..++...|..+ ++|+.|++
T Consensus 310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L 388 (680)
T 1ziw_A 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388 (680)
T ss_dssp C------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred cccccccccccChhhcccCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEEC
Confidence 222335777888888888888 67777777788888888888888853 34444444433 57888888
Q ss_pred cCCcCCCCChhhhcCCCCCCEEeCCCCcccccc-CCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcC
Q psy16110 504 AHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR-VGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNN 582 (719)
Q Consensus 504 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 582 (719)
++|+++.+.+.+|..+++|++|++++|++++.. +..+.++++|++|++++|+++.+....|. .+++|++|++++
T Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~~~~L~~L~l~~ 463 (680)
T 1ziw_A 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-----LVPSLQRLMLRR 463 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-----TCTTCCEEECTT
T ss_pred CCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh-----cCcccccchhcc
Confidence 889888888888889999999999999998644 46788999999999999998877766664 459999999999
Q ss_pred CCCC--CcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcc--------cCCCCCCCCEEeC
Q psy16110 583 NELT--YLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDY--------DYGYLPRLRKLNL 652 (719)
Q Consensus 583 n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--------~l~~l~~L~~L~L 652 (719)
|.+. +..|..|..+++|++|++++|+++.+++.++.++++|++|++++|+++++... .+.++++|++|++
T Consensus 464 n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 543 (680)
T 1ziw_A 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543 (680)
T ss_dssp SCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred ccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEEC
Confidence 9987 55788899999999999999999999999999999999999999999986432 3788999999999
Q ss_pred CCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeee
Q psy16110 653 NNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQS 707 (719)
Q Consensus 653 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~ 707 (719)
++|+++.+++..|..+++|+.|++++|+++.+|+..|.++++| .|++++|++...
T Consensus 544 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred CCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence 9999999998889999999999999999999999999999999 999999998664
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.5e-58 Score=537.33 Aligned_cols=536 Identities=22% Similarity=0.184 Sum_probs=419.6
Q ss_pred cccCCcCccccccCCCCcccEEEcCCCCcc-ccCcc-cccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEEC
Q psy16110 148 WVGHQILPMQIFSSSDIPIRRLDFSGNALR-RLSDK-LFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225 (719)
Q Consensus 148 ~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~-~l~~~-~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~L 225 (719)
..++..+|..+... .+|++|||++|.++ .+|.. .+ +.+++|++|+|++|.+.+.+|. ..+.++++|++|+|
T Consensus 86 ~~~~~~l~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~----~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 86 NSHINGSVSGFKCS--ASLTSLDLSRNSLSGPVTTLTSL-GSCSGLKFLNVSSNTLDFPGKV----SGGLKLNSLEVLDL 158 (768)
T ss_dssp TSCEEECCCCCCCC--TTCCEEECCSSEEEEEGGGGGGG-GGCTTCCEEECCSSEEECCSSC----CSCCCCTTCSEEEC
T ss_pred CCCcCCCchhhccC--CCCCEEECCCCcCCCcCCChHHH-hCCCCCCEEECcCCccCCcCCH----HHhccCCCCCEEEC
Confidence 33444444444333 47999999999988 45551 33 5788999999999998876553 23478899999999
Q ss_pred cCCCCcccCcCc---cCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCC
Q psy16110 226 SDNQIKAIEEGI---LKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRL 302 (719)
Q Consensus 226 s~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i 302 (719)
++|+++...+.. +.++++|++|++++|.++...+ +..+++|++|++++|.++...+. ++.+++|++|++++|.+
T Consensus 159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l 235 (768)
T 3rgz_A 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235 (768)
T ss_dssp CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC
T ss_pred CCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcC
Confidence 999998877655 7888999999999998886654 47889999999999998887666 88899999999999999
Q ss_pred cccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCC-ccccccccC-------------ccc
Q psy16110 303 TTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN-KLNSDTFQG-------------THI 368 (719)
Q Consensus 303 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~-~i~~~~f~~-------------~~~ 368 (719)
++..+.+|..+++|++|++++|.+++..+. ..+++|++|++++|+++ .++...+.. +.+
T Consensus 236 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-------~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~ 308 (768)
T 3rgz_A 236 SGDFSRAISTCTELKLLNISSNQFVGPIPP-------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308 (768)
T ss_dssp CSCHHHHTTTCSSCCEEECCSSCCEESCCC-------CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE
T ss_pred CCcccHHHhcCCCCCEEECCCCcccCccCc-------cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC
Confidence 888888889999999999999988754432 15677777888777765 333322211 123
Q ss_pred ccccccccCCCccEEECCCCCCc-CcCC--cchhccCCEEEccCCcccc-cccCccCCC-CccEEEccCCCCCCcCcccc
Q psy16110 369 TIFSFFQDFQKLKSLDLNGNFLI-NLES--TGLEDTLDNLNVRDNQITT-LSSSALNYK-LLTKLDLSHNNLKELEPTAF 443 (719)
Q Consensus 369 ~~~~~l~~~~~L~~L~L~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~-~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~ 443 (719)
.+|..+..+++|++|++++|.++ .++. +..+++|++|++++|.+++ ++.....++ +|+.|++++|.+.+..+..+
T Consensus 309 ~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 388 (768)
T 3rgz_A 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh
Confidence 45667778888888888888776 4443 4556778888888888774 343333454 78888888888776555555
Q ss_pred cC--CCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCC
Q psy16110 444 TN--VPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN 521 (719)
Q Consensus 444 ~~--l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 521 (719)
.. +++|++|++++| .+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 389 ~~~~~~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 467 (768)
T 3rgz_A 389 CQNPKNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467 (768)
T ss_dssp TCSTTCCCCEEECCSS-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred hhcccCCccEEECCCC-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 54 678888888888 444333345778889999999999888777778888999999999999888666667888899
Q ss_pred CCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccE
Q psy16110 522 LTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKT 601 (719)
Q Consensus 522 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 601 (719)
|++|++++|++++..|..+..+++|++|++++|++++..+..+.. +++|++|++++|++++.+|..+..+++|++
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-----LENLAILKLSNNSFSGNIPAELGDCRSLIW 542 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-----CTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc-----CCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence 999999999998888888889999999999999988665555543 588999999999999888888999999999
Q ss_pred EEcCCCCCCC-cChhh----------------------------------------------------------------
Q psy16110 602 LKLAFNKFNY-FPKEL---------------------------------------------------------------- 616 (719)
Q Consensus 602 L~L~~n~l~~-~~~~~---------------------------------------------------------------- 616 (719)
|++++|++++ +|...
T Consensus 543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 9999998773 44322
Q ss_pred -----hcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcC
Q psy16110 617 -----ILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT 691 (719)
Q Consensus 617 -----l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 691 (719)
+..+++|+.||+++|++++..+..++++++|+.|+|++|++++.+|..|.++++|++|||++|+++...+..|.+
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred cCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence 334578999999999999888888999999999999999999998888999999999999999999655567899
Q ss_pred cccc-EEecCCCceee
Q psy16110 692 FLYT-NYDMAPNLVFQ 706 (719)
Q Consensus 692 l~~L-~L~l~~N~l~~ 706 (719)
++.| +|++++|+++.
T Consensus 703 l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCCCSEEECCSSEEEE
T ss_pred CCCCCEEECcCCcccc
Confidence 9999 99999999864
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.1e-56 Score=507.32 Aligned_cols=508 Identities=24% Similarity=0.265 Sum_probs=437.9
Q ss_pred cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110 165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL 244 (719)
Q Consensus 165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 244 (719)
++++|+|++|.++.++...|. .+++|++|+|++|.+.+ +.+.+|.++++|++|+|++|+++.+.+..|+++++|
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~-----i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFS-NFSELQWLDLSRCEIET-----IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CcCEEECCCCCcCEeChhhcc-CCccCcEEeCCCCcccc-----cCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 599999999999999998885 67999999999999987 334689999999999999999999988899999999
Q ss_pred cEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccC-CCcccCCCccCEEEccCCCCcccCcccccCcccCc----EE
Q psy16110 245 LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK-ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIH----IL 319 (719)
Q Consensus 245 ~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~----~L 319 (719)
++|++++|.++.+++..++++++|++|++++|.++.+. |..|+++++|++|++++|.++++.+..|+.+++|+ +|
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L 186 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence 99999999999999878999999999999999998754 78899999999999999999999998898888776 89
Q ss_pred EcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCC----
Q psy16110 320 NLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES---- 395 (719)
Q Consensus 320 ~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~---- 395 (719)
++++|.++.++...+. . .+|+.|++++|.++. ...+..+..+++|+.+++..+.+.....
T Consensus 187 ~l~~n~l~~~~~~~~~-----~-~~L~~L~L~~n~~~~----------~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 187 DMSLNPIDFIQDQAFQ-----G-IKLHELTLRGNFNSS----------NIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp ECTTCCCCEECTTTTT-----T-CEEEEEEEESCCSCH----------HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred eccCCCcceeCccccc-----C-ceeeeeeccCCccch----------hHHHHHhccccccccccccccccccCCccccc
Confidence 9999999998876432 3 389999999998742 2345667788889888876544332211
Q ss_pred -cchh-----ccCCEEEc-cCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCC
Q psy16110 396 -TGLE-----DTLDNLNV-RDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGF 468 (719)
Q Consensus 396 -~~~~-----~~L~~L~l-~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~ 468 (719)
.... -.++.+++ ..+.+.+..+....+++|+.|++++|.+..++ .+..+++|++|++++| .++.+|. +
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n-~l~~lp~--~ 325 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRC-QLKQFPT--L 325 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESC-CCSSCCC--C
T ss_pred ChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh--hccccccCCEEEcccc-cCccccc--C
Confidence 0111 14666777 56677776666556899999999999998886 6889999999999999 6688883 4
Q ss_pred CCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCC--hhhhcCCCCCCEEeCCCCccccccCCccCCCCCC
Q psy16110 469 DPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIP--EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM 546 (719)
Q Consensus 469 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 546 (719)
.+++|+.|++++|...... .+..+++|++|++++|.++.+. +..+..+++|++|++++|.++++ +..+..+++|
T Consensus 326 -~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L 401 (606)
T 3vq2_A 326 -DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEEL 401 (606)
T ss_dssp -CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTC
T ss_pred -CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCC
Confidence 8999999999999544322 5678999999999999998763 45688999999999999999886 4789999999
Q ss_pred CEEEccCCcCCcccC-CcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCC-cChhhhcCCCCCC
Q psy16110 547 KRLDLSFNKLTTFKG-DYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNY-FPKELILGLSYLQ 624 (719)
Q Consensus 547 ~~L~L~~n~l~~~~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~ 624 (719)
++|++++|++.+..+ ..+ ..+++|++|++++|.+++..|..+..+++|++|++++|++++ +.+..+..+++|+
T Consensus 402 ~~L~l~~n~l~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 476 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFSAF-----LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476 (606)
T ss_dssp CEEECTTSEEESTTTTTTT-----TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CeeECCCCccCCccChhhh-----hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence 999999999987755 344 346999999999999999999999999999999999999987 4556689999999
Q ss_pred EEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcc-cc-EEecCCC
Q psy16110 625 EIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL-YT-NYDMAPN 702 (719)
Q Consensus 625 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-~L-~L~l~~N 702 (719)
+|++++|+++++++..+.++++|++|++++|+++++++..|..+++|++|+|++|+++.+|.. |..++ +| ++++++|
T Consensus 477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNN 555 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSC
T ss_pred EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCC
Confidence 999999999999988999999999999999999999888999999999999999999999987 77886 59 9999999
Q ss_pred ceeeeccCCCccccC
Q psy16110 703 LVFQSHLSGHRCECA 717 (719)
Q Consensus 703 ~l~~~~~~~~~C~c~ 717 (719)
|+ .|+|+
T Consensus 556 ~~--------~c~c~ 562 (606)
T 3vq2_A 556 SV--------ACICE 562 (606)
T ss_dssp CC--------CCSST
T ss_pred Cc--------ccCCc
Confidence 99 78886
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-54 Score=506.69 Aligned_cols=525 Identities=21% Similarity=0.186 Sum_probs=419.3
Q ss_pred CcccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCc-cCCCc
Q psy16110 164 IPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGI-LKGCD 242 (719)
Q Consensus 164 ~~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~ 242 (719)
..|+.++++.+.+..+|..+ +.+++|++|+|++|.+.+.+|. ...++++++|++|+|++|.+....+.. +.+++
T Consensus 77 ~~L~~l~~~~~~~~~l~~~~--~~l~~L~~L~Ls~n~l~~~~~~---~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 151 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTT---LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151 (768)
T ss_dssp TTCCEEECTTSCEEECCCCC--CCCTTCCEEECCSSEEEEEGGG---GGGGGGCTTCCEEECCSSEEECCSSCCSCCCCT
T ss_pred CcccccCCcCCCcCCCchhh--ccCCCCCEEECCCCcCCCcCCC---hHHHhCCCCCCEEECcCCccCCcCCHHHhccCC
Confidence 36999999999887777665 4689999999999999886653 237899999999999999988655443 48899
Q ss_pred cCcEEECCCCcCCcCCCCC---CCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEE
Q psy16110 243 NLLELRMDHNRFTSIPSVS---LNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHIL 319 (719)
Q Consensus 243 ~L~~L~L~~n~l~~i~~~~---l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 319 (719)
+|++|++++|.++..++.. +.++++|++|++++|.+++..+ +..+++|++|++++|.+++..+. ++++++|++|
T Consensus 152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L 228 (768)
T 3rgz_A 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHL 228 (768)
T ss_dssp TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEE
T ss_pred CCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEE
Confidence 9999999999999776655 7899999999999999987654 48899999999999999987776 9999999999
Q ss_pred EcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccc-cccccC----------cccccccccccC-CCccEEECCC
Q psy16110 320 NLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLN-SDTFQG----------THITIFSFFQDF-QKLKSLDLNG 387 (719)
Q Consensus 320 ~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~-~~~f~~----------~~~~~~~~l~~~-~~L~~L~L~~ 387 (719)
++++|.+++..+. .+..+++|++|++++|.++... ...+.. +.+.+|..+... ++|++|++++
T Consensus 229 ~Ls~n~l~~~~~~-----~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 229 DISGNKLSGDFSR-----AISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303 (768)
T ss_dssp ECCSSCCCSCHHH-----HTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCS
T ss_pred ECcCCcCCCcccH-----HHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcC
Confidence 9999999865544 5778999999999999886422 111111 122345544443 6777777777
Q ss_pred CCCcCcCC--cchhccCCEEEccCCccc-ccccC-ccCCCCccEEEccCCCCCCcCcccccCCC-cCcEEeCcCCCCCCC
Q psy16110 388 NFLINLES--TGLEDTLDNLNVRDNQIT-TLSSS-ALNYKLLTKLDLSHNNLKELEPTAFTNVP-TLLHLNLSRNAHLSS 462 (719)
Q Consensus 388 n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~~l~~ 462 (719)
|.+++..+ ++.+++|++|++++|.+. .++.. ...+++|++|++++|.+.+..+..+..++ +|++|++++|...+.
T Consensus 304 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~ 383 (768)
T 3rgz_A 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383 (768)
T ss_dssp SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE
T ss_pred CcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCC
Confidence 76664332 445566777777777766 34433 33467777777777777655555566665 777777777744444
Q ss_pred CCCCCCC-CCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccC
Q psy16110 463 LPVGGFD-PLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLY 541 (719)
Q Consensus 463 l~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~ 541 (719)
++..... .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..|..+.
T Consensus 384 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 463 (768)
T 3rgz_A 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463 (768)
T ss_dssp CCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 4433211 267899999999988877777888999999999999999877667788999999999999999988898999
Q ss_pred CCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCC
Q psy16110 542 GLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLS 621 (719)
Q Consensus 542 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 621 (719)
.+++|++|++++|++++..+..+. .+++|++|++++|++++.+|..++.+++|++|++++|++++..+..+..++
T Consensus 464 ~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 464 YVKTLETLILDFNDLTGEIPSGLS-----NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGG-----GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred CCCCceEEEecCCcccCcCCHHHh-----cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 999999999999999866555554 459999999999999999999999999999999999999976667789999
Q ss_pred CCCEEECCCCCCcccCcc--------------------------------------------------------------
Q psy16110 622 YLQEIDLSNNQLKTIDDY-------------------------------------------------------------- 639 (719)
Q Consensus 622 ~L~~L~Ls~n~l~~~~~~-------------------------------------------------------------- 639 (719)
+|+.|++++|++++..|.
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 999999999988743221
Q ss_pred --------cCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceee
Q psy16110 640 --------DYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQ 706 (719)
Q Consensus 640 --------~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~ 706 (719)
.+..+++|++|++++|++++.+|..|.++++|+.|+|++|+++...+..|.+++.| .|||++|++..
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence 24456789999999999999999899999999999999999996555678999999 99999999964
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-52 Score=479.09 Aligned_cols=515 Identities=24% Similarity=0.304 Sum_probs=436.4
Q ss_pred hhhcccccCCcCccccccCCCCcccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCE
Q psy16110 143 TFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRI 222 (719)
Q Consensus 143 ~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~ 222 (719)
.+.+..+.++.+++..|... .+|++|+|++|.++.++...|. .+++|++|+|++|.+.+.. +.+|+++++|++
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~ 109 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRL-INLTFLDLTRCQIYWIHEDTFQ-SQHRLDTLVLTANPLIFMA-----ETALSGPKALKH 109 (606)
T ss_dssp EEECTTCCCSEECTTTSTTC-TTCSEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCSEEC-----TTTTSSCTTCCE
T ss_pred EEEccCCccCcCChhHhccC-ccceEEECCCCccceeChhhcc-CccccCeeeCCCCcccccC-----hhhhcccccccE
Confidence 34445556667766666665 5799999999999999888885 6799999999999998743 457899999999
Q ss_pred EECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccC--EEEccCC
Q psy16110 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLE--RIILRGN 300 (719)
Q Consensus 223 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~--~L~Ls~n 300 (719)
|++++|+++.+.+..|+++++|++|++++|.++.++...+..+++|++|++++|.++.+.+..|..+++|+ .|++++|
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred eeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 99999999999888899999999999999999987644567799999999999999999888899999999 9999999
Q ss_pred CCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCc
Q psy16110 301 RLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKL 380 (719)
Q Consensus 301 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L 380 (719)
.++++.+..|.. .+|++|++++|.. ++. .+..+.+++...+....+.......+ .......+.. .+|
T Consensus 190 ~l~~~~~~~~~~-~~L~~L~l~~~~~--~~~------~~~~l~~~~l~~l~~~~~~~~~~~~i---~~~~~~~l~~-~~L 256 (606)
T 3t6q_A 190 DIAGIEPGAFDS-AVFQSLNFGGTQN--LLV------IFKGLKNSTIQSLWLGTFEDMDDEDI---SPAVFEGLCE-MSV 256 (606)
T ss_dssp CCCEECTTTTTT-CEEEEEECTTCSC--HHH------HHHHTTTCEEEEEECCCCTTSCCCCC---CGGGGGGGGG-SEE
T ss_pred ccCccChhHhhh-ccccccccCCchh--HHH------Hhhhccccchhheechhhcccccccc---ChhHhchhhc-Cce
Confidence 999999887765 6899999999862 211 23444444443333332222211111 1111111222 279
Q ss_pred cEEECCCCCCcCcCC--cchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCC
Q psy16110 381 KSLDLNGNFLINLES--TGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNA 458 (719)
Q Consensus 381 ~~L~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 458 (719)
+.|++++|.++.+++ +..+++|++|++++|.++.++.....+++|++|++++|.+.++.+..+..+++|++|++++|.
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC
Confidence 999999999998876 566789999999999999998887789999999999999999988899999999999999996
Q ss_pred CCCCCCCCCCCCCCCccEEEcCCCCCCCCC--chhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcccccc
Q psy16110 459 HLSSLPVGGFDPLKKLEVLDLAATGLKSIP--QYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR 536 (719)
Q Consensus 459 ~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~ 536 (719)
..+.++...+..+++|++|++++|.+..+. +..+..+++|++|++++|.+..+++..|..+++|++|++++|++.+..
T Consensus 337 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT
T ss_pred cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc
Confidence 666888888999999999999999999876 567889999999999999999988888999999999999999998875
Q ss_pred C-CccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCc---CcCcccCCCCccEEEcCCCCCCCc
Q psy16110 537 V-GSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYL---FPSSFTIHSKLKTLKLAFNKFNYF 612 (719)
Q Consensus 537 ~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~ 612 (719)
+ ..+..+++|++|++++|.++...+..+. .+++|++|++++|.+++. .+..+..+++|++|++++|+++++
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFD-----GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCCCBTTCTTTTT-----TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred cchhhhCcccCCEEECCCCccCCcCHHHHh-----CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 5 4589999999999999999887766654 459999999999999873 236688999999999999999999
Q ss_pred ChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCC
Q psy16110 613 PKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEK 683 (719)
Q Consensus 613 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 683 (719)
++..+.++++|++|++++|++++..+..+.+++.| +|++++|+++++++..|..+++|++|++++|++.+
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 88889999999999999999999998899999999 99999999999999888889999999999999985
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.9e-53 Score=498.23 Aligned_cols=509 Identities=25% Similarity=0.297 Sum_probs=427.0
Q ss_pred cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110 165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL 244 (719)
Q Consensus 165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 244 (719)
++++|||++|.|+.++...|. .+++|++|+|++|...+.+ .+++|.++++|++|+|++|.+..+.++.|.++++|
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~-~l~~L~~LdLs~n~~~~~i----~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFP-FLEQLQLLELGSQYTPLTI----DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCS-SCCSCSEEEECTTCCCCEE----CTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CcCEEECCCCcCCccChhHCc-ccccCeEEeCCCCCCcccc----CHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 699999999999999888885 7799999999999765543 34689999999999999999999999999999999
Q ss_pred cEEECCCCcCCc-CC-CCCCCCCCCCcEEEcCCCcCcccCC-CcccCCCccCEEEccCCCCcccCcccccCc--ccCcEE
Q psy16110 245 LELRMDHNRFTS-IP-SVSLNGPRALRILSMAYNRIGTLKA-DSFLSQRWLERIILRGNRLTTIEGGAFNGL--AKIHIL 319 (719)
Q Consensus 245 ~~L~L~~n~l~~-i~-~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L 319 (719)
++|+|++|.+++ ++ ...++++++|++|++++|.++++.+ ..|+++++|++|++++|.++++.+..+..+ ++|+.|
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 999999999986 33 3358999999999999999998865 578999999999999999999988888887 899999
Q ss_pred EcCCCCCCCcCCCccccccccCCC------CCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCC---
Q psy16110 320 NLGYNRLNKLNSDTFQGGAFNGLA------KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFL--- 390 (719)
Q Consensus 320 ~L~~n~l~~~~~~~~~~~~l~~l~------~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l--- 390 (719)
+++.|.+....+.. +..+. .|+.|++++|.++......+.. . ....+++.+.++.+..
T Consensus 180 ~L~~n~l~~~~~~~-----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-------~-l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 180 SLAANSLYSRVSVD-----WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN-------A-ISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp EECCSBSCCCCCCC-----CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG-------T-SCSCCBSEEECCSSCCBCS
T ss_pred ECCCCccccccccc-----hhhcCCccccCceeEEecCCCcCchhHHHHHHh-------h-cCcccccceeccccccccc
Confidence 99999998755543 22333 4999999999875433222211 1 1235678888774322
Q ss_pred ------cCcCC--c-c-hhccCCEEEccCCcccccccCccC-CCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCC
Q psy16110 391 ------INLES--T-G-LEDTLDNLNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAH 459 (719)
Q Consensus 391 ------~~~~~--~-~-~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 459 (719)
..... + + ..++|+.|++++|.+.++.+..+. +++|+.|++++|.+.++.+..|.++++|++|++++| .
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~ 325 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-L 325 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC-C
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC-C
Confidence 22211 1 1 136899999999999988766655 899999999999999998889999999999999999 7
Q ss_pred CCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCc
Q psy16110 460 LSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539 (719)
Q Consensus 460 l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 539 (719)
++.+++..|..+++|+.|++++|.+..+++..|..+++|++|++++|.++.++. +++|+.|++++|+++.+..
T Consensus 326 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-----~~~L~~L~l~~N~l~~l~~-- 398 (844)
T 3j0a_A 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVTLPK-- 398 (844)
T ss_dssp CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-----CCSCSEEEEESCCCCCCCC--
T ss_pred CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC-----CCCcchhccCCCCcccccc--
Confidence 888877889999999999999999999998889999999999999999987754 7899999999999986632
Q ss_pred cCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcC-cccCCCCccEEEcCCCCCCC-----cC
Q psy16110 540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPS-SFTIHSKLKTLKLAFNKFNY-----FP 613 (719)
Q Consensus 540 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~-----~~ 613 (719)
...+++.|++++|+++.++...+. ..+++|++|++++|++++..+. .+..+++|++|++++|.++. ..
T Consensus 399 --~~~~l~~L~ls~N~l~~l~~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 399 --INLTANLIHLSENRLENLDILYFL----LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp --CCTTCCEEECCSCCCCSSTTHHHH----TTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred --cccccceeecccCccccCchhhhh----hcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc
Confidence 256899999999999876543221 2468999999999999976443 46678999999999999974 34
Q ss_pred hhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcc
Q psy16110 614 KELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL 693 (719)
Q Consensus 614 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 693 (719)
+..|.++++|++|+|++|+++++++..|.++++|+.|+|++|+++++++..+. ++|+.|||++|+++.+++..| .
T Consensus 473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~ 547 (844)
T 3j0a_A 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---V 547 (844)
T ss_dssp SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---S
T ss_pred hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---C
Confidence 45688899999999999999999998999999999999999999999988776 899999999999999888665 4
Q ss_pred cc-EEecCCCceeeeccCCCccccCC
Q psy16110 694 YT-NYDMAPNLVFQSHLSGHRCECAQ 718 (719)
Q Consensus 694 ~L-~L~l~~N~l~~~~~~~~~C~c~~ 718 (719)
+| .+++++||+ .|+|+-
T Consensus 548 ~L~~l~l~~Np~--------~C~c~~ 565 (844)
T 3j0a_A 548 SLSVLDITHNKF--------ICECEL 565 (844)
T ss_dssp SCCEEEEEEECC--------CCSSSC
T ss_pred CcCEEEecCCCc--------cccccc
Confidence 79 999999999 898863
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-51 Score=466.41 Aligned_cols=491 Identities=22% Similarity=0.279 Sum_probs=311.8
Q ss_pred cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110 165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL 244 (719)
Q Consensus 165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 244 (719)
++++|++++|.++.++...|. .+++|++|+|++|.+.+ +.+.+|+++++|++|+|++|+++.+++..|.++++|
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~-----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQT-----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTT-TCSSCCEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred cccEEEccCCccCccChhHhh-CCCCceEEECCCCcCCc-----cCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 599999999999999988885 67999999999999886 344679999999999999999999998899999999
Q ss_pred cEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccC-CCcccCCCccCEEEccCCCCcccCcccccCcccC----cEE
Q psy16110 245 LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK-ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKI----HIL 319 (719)
Q Consensus 245 ~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L----~~L 319 (719)
++|++++|.++.++...++++++|++|++++|.++.+. |..|.++++|++|++++|.++++.+..++.+++| ++|
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence 99999999999999878999999999999999998854 7889999999999999999999998889999998 899
Q ss_pred EcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchh
Q psy16110 320 NLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLE 399 (719)
Q Consensus 320 ~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~ 399 (719)
++++|.++.+++..|. .. +|+.|++++|.... ..++..+..+++++.+.+....+.....
T Consensus 183 ~l~~n~l~~~~~~~~~-----~~-~L~~L~l~~n~~~~----------~~~~~~~~~l~~l~~~~l~~~~~~~~~~---- 242 (570)
T 2z63_A 183 DLSLNPMNFIQPGAFK-----EI-RLHKLTLRNNFDSL----------NVMKTCIQGLAGLEVHRLVLGEFRNEGN---- 242 (570)
T ss_dssp ECTTCCCCEECTTTTT-----TC-EEEEEEEESCCSCT----------THHHHHHHTTTTCEEEEEEEEECCCCSS----
T ss_pred ccCCCCceecCHHHhc-----cC-cceeEecccccccc----------cchhhhhcCccccceeeeccccccCchh----
Confidence 9999999998876443 33 79999999874321 1234445566666665554322211110
Q ss_pred ccCCEEEccCCcccccccCccCCCCccEEEccCC-CCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEE
Q psy16110 400 DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHN-NLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLD 478 (719)
Q Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ 478 (719)
++ .+....+.+.. --.++.++++++ .+.+..+..+..+++|+.|++++| .+..+|.. +..+ +|+.|+
T Consensus 243 --l~--~~~~~~~~~l~-----~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l~~~-~~~~-~L~~L~ 310 (570)
T 2z63_A 243 --LE--KFDKSALEGLC-----NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKDF-SYNF-GWQHLE 310 (570)
T ss_dssp --CE--ECCTTTTGGGG-----GSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC-EECSCCBC-CSCC-CCSEEE
T ss_pred --hh--hcchhhhcccc-----ccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc-cchhhhhh-hccC-CccEEe
Confidence 00 00000010000 011333444443 333333444444555555555555 34444433 2333 555555
Q ss_pred cCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcccccc--CCccCCCCCCCEEEccCCcC
Q psy16110 479 LAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR--VGSLYGLPSMKRLDLSFNKL 556 (719)
Q Consensus 479 ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~l~~l~~L~~L~L~~n~l 556 (719)
+++|.+..++. ..+++|++|++++|.+...... ..+++|++|++++|++++.. +..+..+++|++|++++|.+
T Consensus 311 l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l 385 (570)
T 2z63_A 311 LVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385 (570)
T ss_dssp EESCBCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE
T ss_pred eccCcccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc
Confidence 55555554443 2344555555555544433221 34455555555555555432 33444555555555555555
Q ss_pred CcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCc-CcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCc-
Q psy16110 557 TTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFP-SSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLK- 634 (719)
Q Consensus 557 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~- 634 (719)
+.++.. +. .+++|++|++++|.+.+..+ ..+..+++|++|++++|++....+..+.++++|++|++++|.++
T Consensus 386 ~~~~~~-~~-----~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 459 (570)
T 2z63_A 386 ITMSSN-FL-----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459 (570)
T ss_dssp EEEEEE-EE-----TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred cccccc-cc-----ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc
Confidence 544433 21 23555555555555555433 34555555666666665555555555555566666666666554
Q ss_pred ccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCce
Q psy16110 635 TIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLV 704 (719)
Q Consensus 635 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l 704 (719)
+..+..+..+++|++|++++|+++++.+..|..+++|++|++++|+++.+++..|.++++| .+++++|++
T Consensus 460 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 2233355556666666666666665555555555666666666666665555555556666 666666665
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1e-50 Score=463.56 Aligned_cols=505 Identities=22% Similarity=0.265 Sum_probs=427.7
Q ss_pred ccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCc
Q psy16110 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLL 245 (719)
Q Consensus 166 L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 245 (719)
-++++.+++.++.+|..+ .+++++|+|++|.+.+. .+.+|.++++|++|+|++|+++.+++.+|.++++|+
T Consensus 13 ~~~~~c~~~~l~~ip~~~----~~~l~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~ 83 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI----PSSTKNIDLSFNPLKIL-----KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83 (606)
T ss_dssp TTEEECTTSCCSSCCTTS----CTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCceEccCCCcccCCCCC----CCCcCEEECCCCCcCEe-----ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence 467999999999999865 37999999999999873 345899999999999999999999998999999999
Q ss_pred EEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccC-cccccCcccCcEEEcCCC
Q psy16110 246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE-GGAFNGLAKIHILNLGYN 324 (719)
Q Consensus 246 ~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n 324 (719)
+|++++|.++.+++.+|+++++|++|++++|.++.+++..++++++|++|++++|.++++. |..|+++++|++|++++|
T Consensus 84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred EeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 9999999999997778999999999999999999999888999999999999999998754 788999999999999999
Q ss_pred CCCCcCCCccccccccCCCC-CCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCc--CC-cchhc
Q psy16110 325 RLNKLNSDTFQGGAFNGLAK-IHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL--ES-TGLED 400 (719)
Q Consensus 325 ~l~~~~~~~~~~~~l~~l~~-L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~--~~-~~~~~ 400 (719)
.++.+++..+. .+..++. +++|++++|.++.++...|. ..+|+.|++++|.+... +. ...++
T Consensus 164 ~l~~~~~~~~~--~l~~L~~~l~~L~l~~n~l~~~~~~~~~------------~~~L~~L~L~~n~~~~~~~~~~~~~l~ 229 (606)
T 3vq2_A 164 YIQTITVNDLQ--FLRENPQVNLSLDMSLNPIDFIQDQAFQ------------GIKLHELTLRGNFNSSNIMKTCLQNLA 229 (606)
T ss_dssp CCCEECTTTTH--HHHHCTTCCCEEECTTCCCCEECTTTTT------------TCEEEEEEEESCCSCHHHHHHHHHTTT
T ss_pred cceecChhhhh--hhhccccccceeeccCCCcceeCccccc------------CceeeeeeccCCccchhHHHHHhcccc
Confidence 99998776443 1223332 55899999999877665543 23799999999987632 11 34456
Q ss_pred cCCEEEccCCcccc------cccCccC---CCCccEEEc-cCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCC
Q psy16110 401 TLDNLNVRDNQITT------LSSSALN---YKLLTKLDL-SHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP 470 (719)
Q Consensus 401 ~L~~L~l~~n~l~~------~~~~~~~---~~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~ 470 (719)
.++.+++..+.+.. +....+. --.++.+++ ..+.+.+..+. +..+++|+.|++++| .+..++ .+..
T Consensus 230 ~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~-~~~~l~--~l~~ 305 (606)
T 3vq2_A 230 GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGV-SIKYLE--DVPK 305 (606)
T ss_dssp TCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESC-CCCCCC--CCCT
T ss_pred ccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCc-cchhhh--hccc
Confidence 67777665443322 1111111 124677777 66777777665 889999999999999 778888 4788
Q ss_pred CCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcccccc--CCccCCCCCCCE
Q psy16110 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR--VGSLYGLPSMKR 548 (719)
Q Consensus 471 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~l~~l~~L~~ 548 (719)
+++|++|++++|.+..++ .+ .+++|++|++++|...... .+..+++|++|++++|++++.. +..+..+++|++
T Consensus 306 ~~~L~~L~l~~n~l~~lp--~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~ 380 (606)
T 3vq2_A 306 HFKWQSLSIIRCQLKQFP--TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380 (606)
T ss_dssp TCCCSEEEEESCCCSSCC--CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCE
T ss_pred cccCCEEEcccccCcccc--cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccE
Confidence 999999999999998887 34 8999999999999543222 4678999999999999998874 677889999999
Q ss_pred EEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCc-CcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEE
Q psy16110 549 LDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFP-SSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEID 627 (719)
Q Consensus 549 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 627 (719)
|++++|.++.++ ..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|+++...+..+.++++|++|+
T Consensus 381 L~L~~n~l~~~~-~~~-----~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 381 LDLSFNGAIIMS-ANF-----MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp EECCSCSEEEEC-CCC-----TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred eECCCCccccch-hhc-----cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence 999999998776 333 346999999999999999877 6899999999999999999998888899999999999
Q ss_pred CCCCCCcc-cCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCcee
Q psy16110 628 LSNNQLKT-IDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVF 705 (719)
Q Consensus 628 Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~ 705 (719)
+++|.+++ +.+..+..+++|++|++++|+++++++..|..+++|++|++++|+++.+++..|.++++| +|++++|++.
T Consensus 455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 99999997 466689999999999999999999999999999999999999999999988899999999 9999999997
Q ss_pred eec
Q psy16110 706 QSH 708 (719)
Q Consensus 706 ~~~ 708 (719)
..+
T Consensus 535 ~~p 537 (606)
T 3vq2_A 535 TSK 537 (606)
T ss_dssp CEE
T ss_pred ccC
Confidence 544
No 11
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.2e-50 Score=459.23 Aligned_cols=530 Identities=22% Similarity=0.283 Sum_probs=422.9
Q ss_pred cccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCcccccchhccccEEEc
Q psy16110 117 QLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRL 196 (719)
Q Consensus 117 ~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~L 196 (719)
...++|.+.+++ +||.++ | .++++|||++|+|+.++...|. .+++|++|+|
T Consensus 33 ~~~~~c~~~~l~-----~vP~~l---------------p--------~~~~~LdLs~N~i~~l~~~~f~-~l~~L~~L~L 83 (635)
T 4g8a_A 33 NITYQCMELNFY-----KIPDNL---------------P--------FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDL 83 (635)
T ss_dssp TTEEECTTSCCS-----SCCSSS---------------C--------TTCCEEECTTSCCCEECTTTTT-TCTTCCEEEC
T ss_pred CCEEECCCCCcC-----ccCCCC---------------C--------cCCCEEEeeCCCCCCCCHHHHh-CCCCCCEEEC
Confidence 367899987776 455433 2 2599999999999999999996 6799999999
Q ss_pred CCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCC
Q psy16110 197 ADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276 (719)
Q Consensus 197 s~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n 276 (719)
++|.|++ +++++|.++++|++|+|++|+++.+++++|.++++|++|++++|+++++++.+|+++++|++|++++|
T Consensus 84 s~N~i~~-----i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 84 SRCEIQT-----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 158 (635)
T ss_dssp TTCCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred CCCcCCC-----cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC
Confidence 9999986 45578999999999999999999999999999999999999999999999988999999999999999
Q ss_pred cCcccC-CCcccCCCccCEEEccCCCCcccCcccccCcccCc----EEEcCCCCCCCcCCCccccccccCCCCCCEEeCC
Q psy16110 277 RIGTLK-ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIH----ILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLG 351 (719)
Q Consensus 277 ~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~ 351 (719)
.++.+. +..+..+++|++|++++|+++++.+..|..+.+++ .++++.|.++.++...+ ....++.+++.
T Consensus 159 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~------~~~~~~~l~l~ 232 (635)
T 4g8a_A 159 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF------KEIRLHKLTLR 232 (635)
T ss_dssp CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT------TTCEEEEEEEE
T ss_pred ccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc------cchhhhhhhhh
Confidence 998764 56788999999999999999999988887776654 78899999988877543 23456778887
Q ss_pred CCCCCccccccccCcccccccccccCCCccEEECCCCCC------cCcCC--cchhccCCEEEccCCccc----ccccCc
Q psy16110 352 YNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFL------INLES--TGLEDTLDNLNVRDNQIT----TLSSSA 419 (719)
Q Consensus 352 ~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l------~~~~~--~~~~~~L~~L~l~~n~l~----~~~~~~ 419 (719)
+|.... ...+..+..+..++...+..+.. ..... ......+....+..+... ......
T Consensus 233 ~n~~~~----------~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 302 (635)
T 4g8a_A 233 NNFDSL----------NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLF 302 (635)
T ss_dssp SCCSSH----------HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTT
T ss_pred cccccc----------cccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhh
Confidence 775421 01122344455555554432211 11111 222334444444433322 222222
Q ss_pred cCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCcc
Q psy16110 420 LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLK 499 (719)
Q Consensus 420 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~ 499 (719)
....+++.+++.++.+..+.. +....+|+.|++.+| .+..++. ..+..|+.+++..|....... ...+++|+
T Consensus 303 ~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~-~~~~~~~---~~l~~L~~l~l~~n~~~~~~~--~~~l~~L~ 374 (635)
T 4g8a_A 303 NCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNC-KFGQFPT---LKLKSLKRLTFTSNKGGNAFS--EVDLPSLE 374 (635)
T ss_dssp GGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEEESC-EESSCCC---CBCTTCCEEEEESCCSCCBCC--CCBCTTCC
T ss_pred hhhcccccccccccccccccc--cccchhhhhhhcccc-cccCcCc---ccchhhhhcccccccCCCCcc--cccccccc
Confidence 336788999998888776643 566788999999999 6666664 346788999999988776553 45789999
Q ss_pred EEEccCCcCCCC--ChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcE
Q psy16110 500 YLCLAHNHLTEI--PEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEE 577 (719)
Q Consensus 500 ~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~ 577 (719)
.+++++|.+... ....+..+.+|+++++..+.+... +..+..+++|+.+++.++......... .+..+++++.
T Consensus 375 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~----~~~~l~~l~~ 449 (635)
T 4g8a_A 375 FLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFS----VFLSLRNLIY 449 (635)
T ss_dssp EEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSC----TTTTCTTCCE
T ss_pred cchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhcccccccccc----cccccccccc
Confidence 999999988632 334566789999999999988776 456888999999999998766543321 2235699999
Q ss_pred EECcCCCCCCcCcCcccCCCCccEEEcCCCCC-CCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCc
Q psy16110 578 LNLNNNELTYLFPSSFTIHSKLKTLKLAFNKF-NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNN 656 (719)
Q Consensus 578 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 656 (719)
+++++|.+.+..+..+..++.|++|++++|++ ..+.+..+..+++|++|+|++|+++++++..|.++++|++|+|++|+
T Consensus 450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~ 529 (635)
T 4g8a_A 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529 (635)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence 99999999999999999999999999999974 45666778999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCc-ccc-EEecCCCceeeeccCCCccccC
Q psy16110 657 IDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTF-LYT-NYDMAPNLVFQSHLSGHRCECA 717 (719)
Q Consensus 657 l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l-~~L-~L~l~~N~l~~~~~~~~~C~c~ 717 (719)
|+++++..|..+++|++|||++|+++.+++..|.++ ++| +|+|++||+ .|+|+
T Consensus 530 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~--------~C~C~ 584 (635)
T 4g8a_A 530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF--------ACTCE 584 (635)
T ss_dssp CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB--------CCSGG
T ss_pred CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC--------cccCC
Confidence 999999999999999999999999999999999988 689 999999999 99997
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-49 Score=468.83 Aligned_cols=505 Identities=22% Similarity=0.251 Sum_probs=421.7
Q ss_pred cEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCC-CcccCcCccCCCccCc
Q psy16110 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQ-IKAIEEGILKGCDNLL 245 (719)
Q Consensus 167 ~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 245 (719)
+..|.++++++.||. . +++|++|+|++|.+++. .+.+|.++++|++|+|++|. +..+++.+|.++++|+
T Consensus 7 ~~~dcs~~~L~~vP~-l----p~~l~~LdLs~N~i~~i-----~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~ 76 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-V----LNTTERLLLSFNYIRTV-----TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR 76 (844)
T ss_dssp EEEEESCCCSSCCCS-S----CTTCCEEEEESCCCCEE-----CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC
T ss_pred eEEEccCCCCCCCCC-C----CCCcCEEECCCCcCCcc-----ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCC
Confidence 578899999999997 3 47999999999999873 34689999999999999994 5667788899999999
Q ss_pred EEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCC--CcccCCCccCEEEccCCCCcccCc-ccccCcccCcEEEcC
Q psy16110 246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKA--DSFLSQRWLERIILRGNRLTTIEG-GAFNGLAKIHILNLG 322 (719)
Q Consensus 246 ~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~ 322 (719)
+|+|++|.++.+++.+|+++++|++|++++|.+++..+ ..|..+++|++|++++|.++++.+ ..|+++++|++|+++
T Consensus 77 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 99999999999977799999999999999999987444 348999999999999999998865 579999999999999
Q ss_pred CCCCCCcCCCccccccccCC--CCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcc---
Q psy16110 323 YNRLNKLNSDTFQGGAFNGL--AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG--- 397 (719)
Q Consensus 323 ~n~l~~~~~~~~~~~~l~~l--~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~--- 397 (719)
+|.++.+.+..+ ..+ ++|+.|++++|.+.......+.. .+..+.. ..|+.|++++|.+....+..
T Consensus 157 ~N~i~~~~~~~l-----~~l~~~~L~~L~L~~n~l~~~~~~~~~~----~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~ 226 (844)
T 3j0a_A 157 SNQIFLVCEHEL-----EPLQGKTLSFFSLAANSLYSRVSVDWGK----CMNPFRN-MVLEILDVSGNGWTVDITGNFSN 226 (844)
T ss_dssp SSCCCCCCSGGG-----HHHHHCSSCCCEECCSBSCCCCCCCCCS----SSCTTTT-CCBSEEBCSSCCSSTTTTSGGGG
T ss_pred CCcCCeeCHHHc-----ccccCCccceEECCCCccccccccchhh----cCCcccc-CceeEEecCCCcCchhHHHHHHh
Confidence 999998776643 334 78999999999886533222211 0111221 25999999999877543311
Q ss_pred --hhccCCEEEccCCc---------ccccccCccC---CCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCC
Q psy16110 398 --LEDTLDNLNVRDNQ---------ITTLSSSALN---YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463 (719)
Q Consensus 398 --~~~~L~~L~l~~n~---------l~~~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l 463 (719)
....++.+.++.+. +.......+. .++|+.|++++|.+.++.+..|..+++|+.|++++| .+..+
T Consensus 227 ~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~ 305 (844)
T 3j0a_A 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKI 305 (844)
T ss_dssp TSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC-CCCEE
T ss_pred hcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCC-cCCCC
Confidence 12457788876332 2222222222 478999999999999999999999999999999999 88888
Q ss_pred CCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCC
Q psy16110 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL 543 (719)
Q Consensus 464 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l 543 (719)
++..|.++++|++|++++|.++.+.+..|..+++|++|++++|.+..++...|..+++|++|++++|.++++. .+
T Consensus 306 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~ 380 (844)
T 3j0a_A 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FI 380 (844)
T ss_dssp CTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SC
T ss_pred ChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CC
Confidence 8888999999999999999999998889999999999999999999999888999999999999999988653 37
Q ss_pred CCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCc-CcccCCCCccEEEcCCCCCCCcChh-hhcCCC
Q psy16110 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFP-SSFTIHSKLKTLKLAFNKFNYFPKE-LILGLS 621 (719)
Q Consensus 544 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~ 621 (719)
++|+.|++++|+++.++.. ..+++.|++++|.+++... ..+..+++|++|++++|+++.++.. .+..++
T Consensus 381 ~~L~~L~l~~N~l~~l~~~---------~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 451 (844)
T 3j0a_A 381 PSIPDIFLSGNKLVTLPKI---------NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP 451 (844)
T ss_dssp CSCSEEEEESCCCCCCCCC---------CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT
T ss_pred CCcchhccCCCCccccccc---------ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCC
Confidence 8999999999999876543 2679999999999998632 2355899999999999999976543 356689
Q ss_pred CCCEEECCCCCCcc-----cCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-
Q psy16110 622 YLQEIDLSNNQLKT-----IDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT- 695 (719)
Q Consensus 622 ~L~~L~Ls~n~l~~-----~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L- 695 (719)
+|+.|++++|.++. ..+..|.++++|++|+|++|+++++++..|..+++|+.|+|++|+++.+|+..|. ++|
T Consensus 452 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~ 529 (844)
T 3j0a_A 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLE 529 (844)
T ss_dssp TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCC
T ss_pred ccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--cccc
Confidence 99999999999974 3445688999999999999999999999999999999999999999999988776 789
Q ss_pred EEecCCCceeeec
Q psy16110 696 NYDMAPNLVFQSH 708 (719)
Q Consensus 696 ~L~l~~N~l~~~~ 708 (719)
.|++++|++....
T Consensus 530 ~L~Ls~N~l~~~~ 542 (844)
T 3j0a_A 530 ILDISRNQLLAPN 542 (844)
T ss_dssp EEEEEEECCCCCC
T ss_pred EEECCCCcCCCCC
Confidence 9999999997643
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-48 Score=440.32 Aligned_cols=482 Identities=20% Similarity=0.287 Sum_probs=311.8
Q ss_pred EEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEE
Q psy16110 169 LDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELR 248 (719)
Q Consensus 169 L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 248 (719)
.|.+++.++.+|..++ ++|++|+|++|.+++.. +.+|.++++|++|+|++|+++.+++++|.++++|++|+
T Consensus 10 c~~~~~~l~~ip~~~~----~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT----AAMKSLDLSFNKITYIG-----HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp EECTTSCCSSCCSCCC----TTCCEEECCSSCCCEEC-----SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred EECCCCccccccccCC----CCccEEECcCCccCccC-----hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 4555555555555432 45566666666555422 23455566666666666666655555555666666666
Q ss_pred CCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccC-CCcccCCCccCEEEccCCC-CcccCcccccCcccCcEEEcCCCCC
Q psy16110 249 MDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK-ADSFLSQRWLERIILRGNR-LTTIEGGAFNGLAKIHILNLGYNRL 326 (719)
Q Consensus 249 L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l 326 (719)
+++|.++++++..++++++|++|++++|.++.+. +..+.++++|++|++++|. +..+++.+|.++++|++|++++|.+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 6666666555544555666666666666655432 2445556666666666655 4444445555566666666666655
Q ss_pred CCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCC-----cchhcc
Q psy16110 327 NKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES-----TGLEDT 401 (719)
Q Consensus 327 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-----~~~~~~ 401 (719)
++..+. .+..+++|++|++++|.+..++.. .+..+++|++|++++|.+++.+. ....+.
T Consensus 161 ~~~~~~-----~l~~l~~L~~L~l~~n~~~~~~~~-----------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 224 (549)
T 2z81_A 161 RNYQSQ-----SLKSIRDIHHLTLHLSESAFLLEI-----------FADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224 (549)
T ss_dssp CEECTT-----TTTTCSEEEEEEEECSBSTTHHHH-----------HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred cccChh-----hhhccccCceEecccCcccccchh-----------hHhhcccccEEEccCCccccccccccchhhhhhc
Confidence 554333 344455566666655554332211 11234556666666665554321 223345
Q ss_pred CCEEEccCCcccccc-----cCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccE
Q psy16110 402 LDNLNVRDNQITTLS-----SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEV 476 (719)
Q Consensus 402 L~~L~l~~n~l~~~~-----~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~ 476 (719)
|+.|++++|.+++.. .....+++|+.+++++|.+.++.... ......+..+.+++.
T Consensus 225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~-------------------~~~~~~~~~l~~L~~ 285 (549)
T 2z81_A 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN-------------------PSESDVVSELGKVET 285 (549)
T ss_dssp CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC-------------------CCTTTCCCCCTTCCE
T ss_pred ccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc-------------------ccchhhhhhhccccc
Confidence 566666665544321 11123556666666666554432100 000011233455555
Q ss_pred EEcCCCCCCCCC-----chhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcccccc---CCccCCCCCCCE
Q psy16110 477 LDLAATGLKSIP-----QYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR---VGSLYGLPSMKR 548 (719)
Q Consensus 477 L~ls~n~l~~~~-----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~---~~~l~~l~~L~~ 548 (719)
|++.++.+.... ...+....+|++|++++|.+..+|...+..+++|++|++++|++++.. +..+..+++|++
T Consensus 286 L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~ 365 (549)
T 2z81_A 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365 (549)
T ss_dssp EEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCE
T ss_pred ccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcE
Confidence 555555443321 112334578999999999999999887778899999999999998755 345778899999
Q ss_pred EEccCCcCCcccC--CcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEE
Q psy16110 549 LDLSFNKLTTFKG--DYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEI 626 (719)
Q Consensus 549 L~L~~n~l~~~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 626 (719)
|++++|++++++. ..+. .+++|++|++++|+++++ |..+..+++|++|++++|+++.++... .++|++|
T Consensus 366 L~Ls~N~l~~~~~~~~~~~-----~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~l~~l~~~~---~~~L~~L 436 (549)
T 2z81_A 366 LVLSQNHLRSMQKTGEILL-----TLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCI---PQTLEVL 436 (549)
T ss_dssp EECTTSCCCCHHHHHHHGG-----GCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTSCCSCCCTTS---CTTCSEE
T ss_pred EEccCCcccccccchhhhh-----cCCCCCEEECCCCCCccC-ChhhcccccccEEECCCCCcccccchh---cCCceEE
Confidence 9999999987653 3333 358999999999999865 778888999999999999999887543 3689999
Q ss_pred ECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCcee
Q psy16110 627 DLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVF 705 (719)
Q Consensus 627 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~ 705 (719)
++++|++++++ ..+++|++|++++|+++.++.. ..+++|++|+|++|+++.+++..|..+++| .+++++|++
T Consensus 437 ~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~ip~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~- 509 (549)
T 2z81_A 437 DVSNNNLDSFS----LFLPRLQELYISRNKLKTLPDA--SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW- 509 (549)
T ss_dssp ECCSSCCSCCC----CCCTTCCEEECCSSCCSSCCCG--GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB-
T ss_pred ECCCCChhhhc----ccCChhcEEECCCCccCcCCCc--ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc-
Confidence 99999998764 4788999999999999987763 457899999999999999999889999999 999999998
Q ss_pred eeccCCCccccC
Q psy16110 706 QSHLSGHRCECA 717 (719)
Q Consensus 706 ~~~~~~~~C~c~ 717 (719)
.|+|.
T Consensus 510 -------~~~~~ 514 (549)
T 2z81_A 510 -------DCSCP 514 (549)
T ss_dssp -------CCCHH
T ss_pred -------cCCCc
Confidence 78775
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.1e-47 Score=430.82 Aligned_cols=460 Identities=19% Similarity=0.239 Sum_probs=311.9
Q ss_pred cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110 165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL 244 (719)
Q Consensus 165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 244 (719)
++++|++++|+++.++...|. .+++|++|+|++|.+.+. .+++|.++++|++|+|++|+++.+++..|+++++|
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLR-ACANLQVLILKSSRINTI-----EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTS-SCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CccEEECcCCccCccChhhhh-cCCcccEEECCCCCcCcc-----ChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 599999999999999877775 679999999999999873 34679999999999999999999999889999999
Q ss_pred cEEECCCCcCCcCC-CCCCCCCCCCcEEEcCCCc-CcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcC
Q psy16110 245 LELRMDHNRFTSIP-SVSLNGPRALRILSMAYNR-IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLG 322 (719)
Q Consensus 245 ~~L~L~~n~l~~i~-~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 322 (719)
++|++++|.++.++ +..++++++|++|++++|. +..+++..|..+++|++|++++|.+++..+..++.+++|++|+++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 99999999999653 2368999999999999998 677777889999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCC------c
Q psy16110 323 YNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES------T 396 (719)
Q Consensus 323 ~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~------~ 396 (719)
.|.+..++.. .+..+++|++|++++|+++.++.... .....+++|+.|++++|.+++... .
T Consensus 181 ~n~~~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 247 (549)
T 2z81_A 181 LSESAFLLEI-----FADILSSVRYLELRDTNLARFQFSPL--------PVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247 (549)
T ss_dssp CSBSTTHHHH-----HHHSTTTBSEEEEESCBCTTCCCCCC--------SSCCCCCCCCEEEEESCEEEHHHHHHHHGGG
T ss_pred cCcccccchh-----hHhhcccccEEEccCCcccccccccc--------chhhhhhcccceeccccccchhHHHHHHHHh
Confidence 9998776543 24568999999999999876532111 112347899999999998775322 2
Q ss_pred chhccCCEEEccCCcccccccC-------ccCCCCccEEEccCCCCCCcC-----cccccCCCcCcEEeCcCCCCCCCCC
Q psy16110 397 GLEDTLDNLNVRDNQITTLSSS-------ALNYKLLTKLDLSHNNLKELE-----PTAFTNVPTLLHLNLSRNAHLSSLP 464 (719)
Q Consensus 397 ~~~~~L~~L~l~~n~l~~~~~~-------~~~~~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~~l~~l~ 464 (719)
...+.|+.+++++|.+.++... ...+++|+.|++.++.+.... +..+...++|+.|+++
T Consensus 248 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~--------- 318 (549)
T 2z81_A 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE--------- 318 (549)
T ss_dssp GGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEE---------
T ss_pred hhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEec---------
Confidence 4457899999999988765422 122556666666666554321 0111222344445554
Q ss_pred CCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCCh---hhhcCCCCCCEEeCCCCccccccC--Cc
Q psy16110 465 VGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE---MMFKNLLNLTYLDLSNNNIVNLRV--GS 539 (719)
Q Consensus 465 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~i~~~~~--~~ 539 (719)
+|.+..++...+..+++|++|++++|++++... ..+..+++|++|++++|+++++.+ ..
T Consensus 319 ----------------~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 382 (549)
T 2z81_A 319 ----------------NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382 (549)
T ss_dssp ----------------SSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHH
T ss_pred ----------------cCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhh
Confidence 444444444333344455555555554443211 113344455555555555544321 23
Q ss_pred cCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcC
Q psy16110 540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILG 619 (719)
Q Consensus 540 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 619 (719)
+..+++|++|++++|+++.++... ..+++|++|++++|.++++. ..+ .++|++|++++|++++++ ..
T Consensus 383 ~~~l~~L~~L~Ls~N~l~~lp~~~------~~~~~L~~L~Ls~N~l~~l~-~~~--~~~L~~L~Ls~N~l~~~~----~~ 449 (549)
T 2z81_A 383 LLTLKNLTSLDISRNTFHPMPDSC------QWPEKMRFLNLSSTGIRVVK-TCI--PQTLEVLDVSNNNLDSFS----LF 449 (549)
T ss_dssp GGGCTTCCEEECTTCCCCCCCSCC------CCCTTCCEEECTTSCCSCCC-TTS--CTTCSEEECCSSCCSCCC----CC
T ss_pred hhcCCCCCEEECCCCCCccCChhh------cccccccEEECCCCCccccc-chh--cCCceEEECCCCChhhhc----cc
Confidence 444555555555555554433221 12345555555555554432 111 145666666666665543 34
Q ss_pred CCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCC
Q psy16110 620 LSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEK 683 (719)
Q Consensus 620 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 683 (719)
+++|++|++++|+++.++. ...+++|++|++++|+++++++..|..+++|+.|++++|++.+
T Consensus 450 l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 450 LPRLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CTTCCEEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred CChhcEEECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 5666667777776666554 2456677777777777777766666667777777777777663
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-45 Score=418.16 Aligned_cols=518 Identities=21% Similarity=0.281 Sum_probs=380.5
Q ss_pred ccccccCCCCcccccccccccCCCCCC-CCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCccccc
Q psy16110 107 PCRCKKMSESQLAMDCDNVAFPNGEYP-TLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFS 185 (719)
Q Consensus 107 ~C~c~~~~~~~~~~~c~~~~l~~~~~~-~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~f~ 185 (719)
.|+|.. ....++|.+.+++ .+| .+|.. +..+.+..+.++.++...|... .+|++|+|++|+++.++...|.
T Consensus 2 ~c~~~~---~~~~~~c~~~~l~--~ip~~l~~~--l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~ 73 (570)
T 2z63_A 2 PCVEVV---PNITYQCMELNFY--KIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQ 73 (570)
T ss_dssp CSEEEE---TTTEEECCSSCCS--SCCSSSCSS--CCEEECCSCCCCEECTTTTTTC-SSCCEEECTTCCCCEECTTTTT
T ss_pred CccccC---CCcEEEeCCCCcc--ccCCCcccc--ccEEEccCCccCccChhHhhCC-CCceEEECCCCcCCccCccccc
Confidence 355542 2467999987776 333 24433 3455666777888887777665 5799999999999999988885
Q ss_pred chhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCC-CCCCCC
Q psy16110 186 PHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIP-SVSLNG 264 (719)
Q Consensus 186 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~-~~~l~~ 264 (719)
.+++|++|+|++|.+.+. .+.+|+++++|++|++++|+++.+++..|+++++|++|++++|.++.++ +..+++
T Consensus 74 -~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~ 147 (570)
T 2z63_A 74 -SLSHLSTLILTGNPIQSL-----ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147 (570)
T ss_dssp -TCTTCCEEECTTCCCCEE-----CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGG
T ss_pred -CchhCCEEeCcCCcCCcc-----CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcc
Confidence 679999999999999863 3468999999999999999999998878999999999999999999742 337999
Q ss_pred CCCCcEEEcCCCcCcccCCCcccCCCcc----CEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCcccccccc
Q psy16110 265 PRALRILSMAYNRIGTLKADSFLSQRWL----ERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFN 340 (719)
Q Consensus 265 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L----~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 340 (719)
+++|++|++++|.++.+.+..++.+.+| +.|++++|.++++.+.+|..+ +|++|++++|...... +. ..+.
T Consensus 148 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~---~~-~~~~ 222 (570)
T 2z63_A 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV---MK-TCIQ 222 (570)
T ss_dssp CTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTH---HH-HHHH
T ss_pred cCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccc---hh-hhhc
Confidence 9999999999999999988888888888 899999999999999888876 8999999988543211 11 1355
Q ss_pred CCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCC-cccccccCc
Q psy16110 341 GLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDN-QITTLSSSA 419 (719)
Q Consensus 341 ~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~ 419 (719)
.+++++.+.+....+... ..++ .+....+..+.. -.++.++++++ .+.+..+..
T Consensus 223 ~l~~l~~~~l~~~~~~~~-------------------~~l~--~~~~~~~~~l~~----l~l~~l~l~~~~~~~~~~~~~ 277 (570)
T 2z63_A 223 GLAGLEVHRLVLGEFRNE-------------------GNLE--KFDKSALEGLCN----LTIEEFRLAYLDYYLDDIIDL 277 (570)
T ss_dssp TTTTCEEEEEEEEECCCC-------------------SSCE--ECCTTTTGGGGG----SEEEEEEEEETTEEESCSTTT
T ss_pred CccccceeeeccccccCc-------------------hhhh--hcchhhhccccc----cchhhhhhhcchhhhhhchhh
Confidence 666776665543322110 0111 001111111100 02333444433 222222222
Q ss_pred -cCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCc
Q psy16110 420 -LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNL 498 (719)
Q Consensus 420 -~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L 498 (719)
..+++|+.|++++|.+.+++. .+..+ +|++|++++| .+..+|. ..+++|+.|++++|.+...... ..+++|
T Consensus 278 ~~~l~~L~~L~l~~~~l~~l~~-~~~~~-~L~~L~l~~n-~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L 349 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVTIERVKD-FSYNF-GWQHLELVNC-KFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSL 349 (570)
T ss_dssp TGGGTTCSEEEEESCEECSCCB-CCSCC-CCSEEEEESC-BCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTC
T ss_pred hcCcCcccEEEecCccchhhhh-hhccC-CccEEeeccC-cccccCc---ccccccCEEeCcCCcccccccc--ccCCCC
Confidence 225666666666666665433 34445 6666666666 5555554 3456677777777765554432 567778
Q ss_pred cEEEccCCcCCCCC--hhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccC-CcCCCCCCCCCCCC
Q psy16110 499 KYLCLAHNHLTEIP--EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKG-DYFNTKSKPNTSSL 575 (719)
Q Consensus 499 ~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~l~~L 575 (719)
++|++++|.++... +..+..+++|++|++++|++.+..+. +..+++|++|++++|.+....+ ..+ ..+++|
T Consensus 350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~l~~L 423 (570)
T 2z63_A 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF-----LSLRNL 423 (570)
T ss_dssp CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTT-----TTCTTC
T ss_pred CEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhh-----hcCCCC
Confidence 88888888777653 34567788888888888888877554 7888888888888888776543 233 346889
Q ss_pred cEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCC-C-cChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCC
Q psy16110 576 EELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFN-Y-FPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLN 653 (719)
Q Consensus 576 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 653 (719)
++|++++|.+.+..+..+..+++|++|++++|+++ + +| ..+..+++|++|++++|+++++.+..+.++++|++|+++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch-hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 99999999998888888999999999999999887 2 44 557889999999999999999888889999999999999
Q ss_pred CCcCCCCCcccCCCCCCCcEEECCCCcCCC
Q psy16110 654 NNNIDAISETCFFNSSQLQIINLSFNRLEK 683 (719)
Q Consensus 654 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 683 (719)
+|+++++++..|..+++|+.|++++|++++
T Consensus 503 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 999999988889999999999999999884
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.1e-45 Score=406.75 Aligned_cols=461 Identities=19% Similarity=0.221 Sum_probs=322.8
Q ss_pred cEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcE
Q psy16110 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLE 246 (719)
Q Consensus 167 ~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 246 (719)
++||+++|+++.+|..++ ++|++|+|++|.+.+ +.+.+|.++++|++|+|++|+++.+.+..|.++++|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~----~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 73 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS----QKTTILNISQNYISE-----LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEY 73 (520)
T ss_dssp CEEECTTSCCSSCCCSCC----TTCSEEECCSSCCCC-----CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCE
T ss_pred ceEecCCCCccccccccc----ccccEEECCCCcccc-----cChhhccccccccEEecCCCccCCcChHHhhcccCCCE
Confidence 679999999999998664 799999999999986 44568999999999999999999998888999999999
Q ss_pred EECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccC-CCcccCCCccCEEEccCCCCcccCcccccCcccC--cEEEcCC
Q psy16110 247 LRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK-ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKI--HILNLGY 323 (719)
Q Consensus 247 L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L--~~L~L~~ 323 (719)
|++++|+++++|.. .+++|++|++++|.++.+. |..|+.+++|++|++++|.+++ ..+..+++| ++|++++
T Consensus 74 L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 74 LDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp EECCSSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred EecCCCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence 99999999999874 8999999999999998853 5789999999999999999876 356777777 9999999
Q ss_pred CCC--CCcCCCccccccccCCC-CCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhc
Q psy16110 324 NRL--NKLNSDTFQGGAFNGLA-KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED 400 (719)
Q Consensus 324 n~l--~~~~~~~~~~~~l~~l~-~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~ 400 (719)
|.+ ....+.. +..+. +...+++++|.+... .....+..+++|+.+++++|.....-.
T Consensus 148 n~l~~~~~~~~~-----l~~l~~~~l~l~l~~n~~~~~----------~~~~~~~~l~~L~~L~l~~n~~~~~~~----- 207 (520)
T 2z7x_B 148 GETYGEKEDPEG-----LQDFNTESLHIVFPTNKEFHF----------ILDVSVKTVANLELSNIKCVLEDNKCS----- 207 (520)
T ss_dssp CTTTTSSCCTTT-----TTTCCEEEEEEECCSSSCCCC----------CCCCCCTTCSEEEECCEEECCSTTTTH-----
T ss_pred cccccccccccc-----ccccccceEEEEeccCcchhh----------hhhhhhhcccceeeccccccccccccc-----
Confidence 988 5544432 22222 233567777765321 112234456777777777764100000
Q ss_pred cCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccc---cCCCcCcEEeCcCCCCCCCCCCCCC----CCCCC
Q psy16110 401 TLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAF---TNVPTLLHLNLSRNAHLSSLPVGGF----DPLKK 473 (719)
Q Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~~l~~l~~~~~----~~l~~ 473 (719)
.+.+..+....+++|+.|++++|.+.+.....+ ...++|++|++++|...+.+|...| ..+++
T Consensus 208 ----------~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~ 277 (520)
T 2z7x_B 208 ----------YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277 (520)
T ss_dssp ----------HHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCE
T ss_pred ----------eeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCce
Confidence 011111112223444444444443332110000 0123555555555522224444332 55667
Q ss_pred ccEEEcCCCCCCCCCchhhcCC---CCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEE
Q psy16110 474 LEVLDLAATGLKSIPQYQFDEL---LNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLD 550 (719)
Q Consensus 474 L~~L~ls~n~l~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 550 (719)
|+.+++++|.+ .++...+..+ .+|+.|++++|.+..++. +..+++|++|++++|++++..|..+..+++|++|+
T Consensus 278 L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 354 (520)
T 2z7x_B 278 LSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354 (520)
T ss_dssp EEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEE
T ss_pred eEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEE
Confidence 77777777766 5553333333 568888888887766542 25678888888888888887777788888888888
Q ss_pred ccCCcCCcccC--CcCCCCCCCCCCCCcEEECcCCCCCC-cCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEE
Q psy16110 551 LSFNKLTTFKG--DYFNTKSKPNTSSLEELNLNNNELTY-LFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEID 627 (719)
Q Consensus 551 L~~n~l~~~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 627 (719)
+++|++++++. ..+. .+++|++|++++|.+++ +.+..+..+++|++|++++|++++..+..+. ++|++|+
T Consensus 355 L~~N~l~~l~~~~~~~~-----~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~ 427 (520)
T 2z7x_B 355 LQMNQLKELSKIAEMTT-----QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLD 427 (520)
T ss_dssp CCSSCCCBHHHHHHHHT-----TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEE
T ss_pred ccCCccCccccchHHHh-----hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEE
Confidence 88888875432 2232 35788888888888887 4444577888888888888888764443332 6888899
Q ss_pred CCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCC
Q psy16110 628 LSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEK 683 (719)
Q Consensus 628 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 683 (719)
+++|+++.++.. +..+++|++|++++|+++++++..|..+++|++|++++|++++
T Consensus 428 Ls~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 428 LHSNKIKSIPKQ-VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcccccchh-hhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 998888877764 4488889999999998888877668888899999999998885
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.3e-45 Score=407.14 Aligned_cols=453 Identities=18% Similarity=0.196 Sum_probs=344.0
Q ss_pred cEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEE
Q psy16110 192 QELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRIL 271 (719)
Q Consensus 192 ~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L 271 (719)
++|++++|.++. +|. .+. ++|++|+|++|+++.+++..|.++++|++|++++|+++.+++.+|+++++|++|
T Consensus 3 ~~l~ls~n~l~~-ip~-----~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPK-----DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCCSS-CCC-----SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred ceEecCCCCccc-ccc-----ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence 578888888874 443 222 788888888888888887778888888888888888888766678888888888
Q ss_pred EcCCCcCcccCCCcccCCCccCEEEccCCCCccc-CcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCC--CEE
Q psy16110 272 SMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI-EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI--HIL 348 (719)
Q Consensus 272 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L--~~L 348 (719)
++++|.++.++.. .+++|++|++++|.++++ .|..|+++++|++|++++|.++.. .+..+++| ++|
T Consensus 75 ~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~--------~~~~l~~L~L~~L 143 (520)
T 2z7x_B 75 DLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS--------SVLPIAHLNISKV 143 (520)
T ss_dssp ECCSSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG--------GGGGGTTSCEEEE
T ss_pred ecCCCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh--------hccccccceeeEE
Confidence 8888888877544 688888888888888875 356788888888888888877652 34556666 778
Q ss_pred eCCCCCC--CccccccccCcccccccccccCC-CccEEECCCCCCcCcCCcchhccCCEEEccCCccccc-ccCc-cCCC
Q psy16110 349 NLGYNRL--NKLNSDTFQGTHITIFSFFQDFQ-KLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTL-SSSA-LNYK 423 (719)
Q Consensus 349 ~L~~n~l--~~i~~~~f~~~~~~~~~~l~~~~-~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~-~~~~ 423 (719)
++++|.+ .... |..+..+. +...+ ++++|.+.+. +... ..++
T Consensus 144 ~l~~n~l~~~~~~-----------~~~l~~l~~~~l~l----------------------~l~~n~~~~~~~~~~~~~l~ 190 (520)
T 2z7x_B 144 LLVLGETYGEKED-----------PEGLQDFNTESLHI----------------------VFPTNKEFHFILDVSVKTVA 190 (520)
T ss_dssp EEEECTTTTSSCC-----------TTTTTTCCEEEEEE----------------------ECCSSSCCCCCCCCCCTTCS
T ss_pred Eeecccccccccc-----------cccccccccceEEE----------------------EeccCcchhhhhhhhhhccc
Confidence 8877776 2221 11222221 12223 3444443322 1212 2377
Q ss_pred CccEEEccCCC-------CCCcCcccccCCCcCcEEeCcCCCCCCCC-CCCCC--CCCCCccEEEcCCCCCCCCCchhh-
Q psy16110 424 LLTKLDLSHNN-------LKELEPTAFTNVPTLLHLNLSRNAHLSSL-PVGGF--DPLKKLEVLDLAATGLKSIPQYQF- 492 (719)
Q Consensus 424 ~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~n~~l~~l-~~~~~--~~l~~L~~L~ls~n~l~~~~~~~~- 492 (719)
+|+.+++++|. +.+..+ .+..+++|+.|++++| .+... ..... ...++|++|++++|++.+..+..+
T Consensus 191 ~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 268 (520)
T 2z7x_B 191 NLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNI-ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268 (520)
T ss_dssp EEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEE-EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCC
T ss_pred ceeeccccccccccccceeecchh-hhccccchhhcccccc-ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchh
Confidence 88888888886 444433 6788999999999988 33211 10000 114589999999999984333344
Q ss_pred ----cCCCCccEEEccCCcCCCCChhhhcCC---CCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCC
Q psy16110 493 ----DELLNLKYLCLAHNHLTEIPEMMFKNL---LNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFN 565 (719)
Q Consensus 493 ----~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 565 (719)
..+++|+.+++++|.+ .++...+..+ .+|++|++++|++.... .+..+++|++|++++|++++..+..+.
T Consensus 269 ~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 345 (520)
T 2z7x_B 269 DYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG 345 (520)
T ss_dssp CCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred hcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc
Confidence 8899999999999999 7774444433 68999999999987653 236889999999999999875544443
Q ss_pred CCCCCCCCCCcEEECcCCCCCC--cCcCcccCCCCccEEEcCCCCCCC-cChhhhcCCCCCCEEECCCCCCcccCcccCC
Q psy16110 566 TKSKPNTSSLEELNLNNNELTY--LFPSSFTIHSKLKTLKLAFNKFNY-FPKELILGLSYLQEIDLSNNQLKTIDDYDYG 642 (719)
Q Consensus 566 ~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 642 (719)
.+++|++|++++|++++ ..|..+..+++|++|++++|++++ ++...+..+++|++|++++|++++..+..+.
T Consensus 346 -----~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 420 (520)
T 2z7x_B 346 -----HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420 (520)
T ss_dssp -----CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC
T ss_pred -----cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc
Confidence 46999999999999997 345778999999999999999998 8877788999999999999999876654554
Q ss_pred CCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeeeccCCCccccC
Q psy16110 643 YLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHLSGHRCECA 717 (719)
Q Consensus 643 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~~~~~C~c~ 717 (719)
++|++|++++|+++.+++..+ .+++|++|++++|+++.+|...|..+++| ++++++|++ .|+|+
T Consensus 421 --~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~--------~c~c~ 485 (520)
T 2z7x_B 421 --PRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW--------DCSCP 485 (520)
T ss_dssp --TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB--------CCCHH
T ss_pred --ccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC--------cccCC
Confidence 799999999999998777544 89999999999999999999889999999 999999999 88885
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.3e-43 Score=397.13 Aligned_cols=457 Identities=19% Similarity=0.203 Sum_probs=291.9
Q ss_pred ccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCc
Q psy16110 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLL 245 (719)
Q Consensus 166 L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 245 (719)
.+++|+++|+++.+|..++ ++|++|+|++|.+.+ +.+.+|.++++|++|+|++|+++.+++++|.++++|+
T Consensus 33 ~~~l~ls~~~L~~ip~~~~----~~L~~L~Ls~N~i~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP----PRTKALSLSQNSISE-----LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC----TTCCEEECCSSCCCC-----CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred CcEEEcCCCCCccCCCCCC----CCcCEEECCCCCccc-----cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 5899999999999998653 799999999999987 4456899999999999999999999988999999999
Q ss_pred EEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccC-CCcccCCCccCEEEccCCCCcccCcccccCcccC--cEEEcC
Q psy16110 246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK-ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKI--HILNLG 322 (719)
Q Consensus 246 ~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L--~~L~L~ 322 (719)
+|++++|.++++|.. .+++|++|++++|.++.++ +..|+++++|++|++++|.++... +..+++| ++|+++
T Consensus 104 ~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 104 YLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLD 177 (562)
T ss_dssp EEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEE
T ss_pred EEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEee
Confidence 999999999999974 8999999999999999876 478999999999999999988643 4555555 999999
Q ss_pred CCCC--CCcCCCccccccccCCC-CCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchh
Q psy16110 323 YNRL--NKLNSDTFQGGAFNGLA-KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLE 399 (719)
Q Consensus 323 ~n~l--~~~~~~~~~~~~l~~l~-~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~ 399 (719)
+|.+ +...+..+. .+. ..-.+++++|.+.... ....+..+++|+.+++++|.....
T Consensus 178 ~n~l~~~~~~~~~l~-----~l~~~~l~l~l~~n~~~~~~----------~~~~~~~l~~L~~L~l~~n~~~~~------ 236 (562)
T 3a79_B 178 LVSYHIKGGETESLQ-----IPNTTVLHLVFHPNSLFSVQ----------VNMSVNALGHLQLSNIKLNDENCQ------ 236 (562)
T ss_dssp ESSCCCCSSSCCEEE-----ECCEEEEEEEECSSSCCCCC----------CEEEESSEEEEEEEEEECCSTTHH------
T ss_pred cccccccccCccccc-----ccCcceEEEEecCccchhhh----------hhhcccccceEEEecccccccccc------
Confidence 9988 666554332 222 1114566766653211 112234456666777666631100
Q ss_pred ccCCEEEccCCcccccccCccCCCCccEEEccCCCCCC-----cCcccccCCCcCcEEeCcCCCCCCCCCCCCC----CC
Q psy16110 400 DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKE-----LEPTAFTNVPTLLHLNLSRNAHLSSLPVGGF----DP 470 (719)
Q Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~----~~ 470 (719)
.+.+..+....++.|+.++++++.+.+ +++. ...++|++|++++|...+.+|...| ..
T Consensus 237 -----------~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~ 303 (562)
T 3a79_B 237 -----------RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF--FWPRPVEYLNIYNLTITERIDREEFTYSETA 303 (562)
T ss_dssp -----------HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH--HTTSSEEEEEEEEEEECSCCCCCCCCCCSCS
T ss_pred -----------hHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh--hhcccccEEEEeccEeeccccchhhhccccc
Confidence 011111112223445555554443332 1111 1223566666666633335554433 34
Q ss_pred CCCccEEEcCCCCCCCCCchhhcC---CCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCC
Q psy16110 471 LKKLEVLDLAATGLKSIPQYQFDE---LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK 547 (719)
Q Consensus 471 l~~L~~L~ls~n~l~~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 547 (719)
++.|+.++++.+.+ .++...+.. ..+|++|++++|.+..+.. ...+++|++|++++|++++..+..+..+++|+
T Consensus 304 L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 380 (562)
T 3a79_B 304 LKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380 (562)
T ss_dssp CCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCC
T ss_pred chheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCC
Confidence 45555555555555 444222221 2467777777777655432 24567777777777777776666677777777
Q ss_pred EEEccCCcCCcccC--CcCCCCCCCCCCCCcEEECcCCCCCC-cCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCC
Q psy16110 548 RLDLSFNKLTTFKG--DYFNTKSKPNTSSLEELNLNNNELTY-LFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQ 624 (719)
Q Consensus 548 ~L~L~~n~l~~~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 624 (719)
+|++++|++++++. ..+ ..+++|++|++++|.+++ +.+..+..+++|++|++++|++++..+..+. ++|+
T Consensus 381 ~L~L~~N~l~~~~~~~~~~-----~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~ 453 (562)
T 3a79_B 381 TLILQRNGLKNFFKVALMT-----KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVK 453 (562)
T ss_dssp EEECCSSCCCBTTHHHHTT-----TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCS
T ss_pred EEECCCCCcCCcccchhhh-----cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCC
Confidence 77777777665432 112 234666666666666666 3333456666666666666666543322221 4666
Q ss_pred EEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCC
Q psy16110 625 EIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE 682 (719)
Q Consensus 625 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 682 (719)
+|++++|+++.+++..+ ++++|++|++++|+++++++..|..+++|+.|++++|++.
T Consensus 454 ~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 454 VLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp EEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred EEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 66666666665555333 5666666666666666655554566666666666666665
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.1e-42 Score=395.73 Aligned_cols=516 Identities=21% Similarity=0.250 Sum_probs=377.4
Q ss_pred CCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccc
Q psy16110 135 LPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEF 214 (719)
Q Consensus 135 ~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 214 (719)
+|..+.. +.+....++.+|+..|... ++|++|||++|+|+.|++.+|. .+++|++|+|++|++++ +.+..|
T Consensus 50 lp~~~~~--LdLs~N~i~~l~~~~f~~l-~~L~~L~Ls~N~i~~i~~~~f~-~L~~L~~L~Ls~N~l~~-----l~~~~f 120 (635)
T 4g8a_A 50 LPFSTKN--LDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQS-----LALGAF 120 (635)
T ss_dssp SCTTCCE--EECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCE-----ECGGGG
T ss_pred CCcCCCE--EEeeCCCCCCCCHHHHhCC-CCCCEEECCCCcCCCcChhHhc-CCCCCCEEEccCCcCCC-----CCHHHh
Confidence 4555543 4445567889998888876 5899999999999999999996 67999999999999986 445789
Q ss_pred cCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCC-CCCCCCCCCCcEEEcCCCcCcccCCCcccCCCcc-
Q psy16110 215 HGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIP-SVSLNGPRALRILSMAYNRIGTLKADSFLSQRWL- 292 (719)
Q Consensus 215 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~-~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L- 292 (719)
.++++|++|+|++|+++.+++..|+++++|++|++++|.++.++ +..++.+++|++|++++|.++.+.+..|..+.++
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence 99999999999999999999999999999999999999998653 3367889999999999999999988877665544
Q ss_pred ---CEEEccCCCCcccCcccccCcccCcEEEcCCCCCCC-cCCCccccccccCCCCCCEEeCCCCCCCccccccccCccc
Q psy16110 293 ---ERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNK-LNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHI 368 (719)
Q Consensus 293 ---~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~ 368 (719)
..++++.|.+..+.+..+.. ..++.+++.+|.... +... .+..+..++...+..+....... ...
T Consensus 201 ~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~-----~~~~l~~l~~~~l~~~~~~~~~~-----l~~ 269 (635)
T 4g8a_A 201 LLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKT-----CIQGLAGLEVHRLVLGEFRNEGN-----LEK 269 (635)
T ss_dssp TCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHH-----HHHTTTTCEEEEEEEECCTTSCC-----CSC
T ss_pred hhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccch-----hhcCCcccccccccccccccccc-----ccc
Confidence 47899999999988876654 456788888775432 1111 34556666665554332211100 000
Q ss_pred ccccccccCCCccEEECCCCCCcC----c-CCcchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccc
Q psy16110 369 TIFSFFQDFQKLKSLDLNGNFLIN----L-ESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAF 443 (719)
Q Consensus 369 ~~~~~l~~~~~L~~L~L~~n~l~~----~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 443 (719)
.....+.....+...++..+.... . ........++.+.+.++.+..+.. ......|+.|++.+|.+.++...
T Consensus 270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~-- 346 (635)
T 4g8a_A 270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTL-- 346 (635)
T ss_dssp CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSCCCCSEEEEESCEESSCCCC--
T ss_pred ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc-cccchhhhhhhcccccccCcCcc--
Confidence 111223334444444443332211 1 113445677788888777766543 22356788888888877766543
Q ss_pred cCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCC--CchhhcCCCCccEEEccCCcCCCCChhhhcCCCC
Q psy16110 444 TNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI--PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN 521 (719)
Q Consensus 444 ~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 521 (719)
.++.|+.+++..| .....+. +..+++|+.+++++|.+... .+..+..+.+|+++++..+....++. .+..+++
T Consensus 347 -~l~~L~~l~l~~n-~~~~~~~--~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~-~~~~l~~ 421 (635)
T 4g8a_A 347 -KLKSLKRLTFTSN-KGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS-NFLGLEQ 421 (635)
T ss_dssp -BCTTCCEEEEESC-CSCCBCC--CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS-CCTTCTT
T ss_pred -cchhhhhcccccc-cCCCCcc--cccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc-ccccccc
Confidence 4567778888877 4444332 34678888888888877643 23455567788888888887665554 3567788
Q ss_pred CCEEeCCCCcccccc-CCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCC-CCcCcCcccCCCCc
Q psy16110 522 LTYLDLSNNNIVNLR-VGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNEL-TYLFPSSFTIHSKL 599 (719)
Q Consensus 522 L~~L~Ls~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L 599 (719)
|+.++++.+...... ...+..+++++.++++.|.+.......+.. ++.+++|++++|.+ .+..|..|..+++|
T Consensus 422 L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~-----~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L 496 (635)
T 4g8a_A 422 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-----LSSLEVLKMAGNSFQENFLPDIFTELRNL 496 (635)
T ss_dssp CCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT-----CTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred ccchhhhhcccccccccccccccccccccccccccccccccccccc-----chhhhhhhhhhcccccccCchhhhhcccc
Confidence 888888887766543 356778888888888888887766655543 48888888888864 44567788888888
Q ss_pred cEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCC-CCCcEEECCC
Q psy16110 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNS-SQLQIINLSF 678 (719)
Q Consensus 600 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~ 678 (719)
++|+|++|+++++++..|.++++|++|+|++|+++++++..|.++++|++|+|++|+++++++..|..+ ++|++|+|++
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 888888888888888888888888888888888888888788888888888888888888888888777 5788888888
Q ss_pred CcCCC
Q psy16110 679 NRLEK 683 (719)
Q Consensus 679 N~l~~ 683 (719)
|++.+
T Consensus 577 Np~~C 581 (635)
T 4g8a_A 577 NDFAC 581 (635)
T ss_dssp CCBCC
T ss_pred CCCcc
Confidence 88874
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.7e-42 Score=399.11 Aligned_cols=296 Identities=21% Similarity=0.263 Sum_probs=181.3
Q ss_pred CccEEECCCCCCcCcCC---cchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCc-CcEEeC
Q psy16110 379 KLKSLDLNGNFLINLES---TGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPT-LLHLNL 454 (719)
Q Consensus 379 ~L~~L~L~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L 454 (719)
+|+.|++++|.++.+|. +..+++|+.|++++|.++.++ ....+++|+.|++++|.+..++ ..+.++++ |+.|++
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp-~~l~~l~~~L~~L~L 626 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIP-EDFCAFTDQVEGLGF 626 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCC-TTSCEECTTCCEEEC
T ss_pred CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccch-HHHhhccccCCEEEC
Confidence 44444444444443333 233344444444444444333 2333555666666666555333 33555555 666666
Q ss_pred cCCCCCCCCCCCCCCCCC--CccEEEcCCCCCCCCCchh---hc--CCCCccEEEccCCcCCCCChhhhcCCCCCCEEeC
Q psy16110 455 SRNAHLSSLPVGGFDPLK--KLEVLDLAATGLKSIPQYQ---FD--ELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDL 527 (719)
Q Consensus 455 ~~n~~l~~l~~~~~~~l~--~L~~L~ls~n~l~~~~~~~---~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 527 (719)
++| .++.+|.. +..+. +|+.|++++|.+.+..+.. +. ..++|+.|++++|.++.++...+..+++|++|++
T Consensus 627 s~N-~L~~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~L 704 (876)
T 4ecn_A 627 SHN-KLKYIPNI-FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704 (876)
T ss_dssp CSS-CCCSCCSC-CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEEC
T ss_pred cCC-CCCcCchh-hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEEC
Confidence 666 44555532 33332 3667777777665533211 11 2347888888888888888777777888888888
Q ss_pred CCCccccccCCccCCC-------CCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCcc
Q psy16110 528 SNNNIVNLRVGSLYGL-------PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLK 600 (719)
Q Consensus 528 s~n~i~~~~~~~l~~l-------~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 600 (719)
++|+++.+.+..+... ++|+.|+|++|+++.++...+. ..+++|+.|+|++|.++++ |..+..+++|+
T Consensus 705 s~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~----~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~ 779 (876)
T 4ecn_A 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA----TTLPYLSNMDVSYNCFSSF-PTQPLNSSQLK 779 (876)
T ss_dssp CSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST----TTCTTCCEEECCSSCCSSC-CCGGGGCTTCC
T ss_pred CCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh----ccCCCcCEEEeCCCCCCcc-chhhhcCCCCC
Confidence 8888776544443322 2666666666666655433320 1246666666666666663 55566666666
Q ss_pred EEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCc
Q psy16110 601 TLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNR 680 (719)
Q Consensus 601 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 680 (719)
+|+|++|+ ++++|++.+..+..+.++++|+.|+|++|++..++.. +. ++|+.|||++|+
T Consensus 780 ~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~-l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 780 AFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK-LT--PQLYILDIADNP 838 (876)
T ss_dssp EEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-CC--SSSCEEECCSCT
T ss_pred EEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCCCccCHh-hc--CCCCEEECCCCC
Confidence 66666654 4556888877777888899999999999999666554 43 689999999999
Q ss_pred CCCcChHhhcCcccc-EEecCCCce
Q psy16110 681 LEKLPERLFNTFLYT-NYDMAPNLV 704 (719)
Q Consensus 681 l~~i~~~~~~~l~~L-~L~l~~N~l 704 (719)
+..+....|.....+ .+.|.+|++
T Consensus 839 l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 839 NISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp TCEEECGGGHHHHHTTCCEEECCTT
T ss_pred CCccChHHccccccchheeecCCCc
Confidence 988877666655566 777777776
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.6e-42 Score=394.11 Aligned_cols=440 Identities=22% Similarity=0.287 Sum_probs=282.2
Q ss_pred cccEEEcCCCCcc-ccCcccccchhccccEEEcCCCcCCCcCCC--------CCCcccccCCCCCCEEECcCCCCcccCc
Q psy16110 165 PIRRLDFSGNALR-RLSDKLFSPHRDTLQELRLADNLFGDSLNP--------IFSTSEFHGLVNLRILDLSDNQIKAIEE 235 (719)
Q Consensus 165 ~L~~L~Ls~n~i~-~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~--------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 235 (719)
+++.|+|+++.+. .+|..+ +.+++|++|+|++|.+...... .+..+ . +..|+ +++++|.+....+
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l--~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~-~--~~~l~-l~l~~~~l~~~~~ 155 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAI--GQLTELEVLALGSHGEKVNERLFGPKGISANMSDE-Q--KQKMR-MHYQKTFVDYDPR 155 (636)
T ss_dssp CEEEEECTTSCCEEEECGGG--GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHH-H--HHHHH-THHHHHHTCCCGG
T ss_pred CEEEEEecCcccCCcCChHH--hcCccceEEECcCCccccCCccccccccccCchHH-H--HHHHH-hhHHHhhhccCch
Confidence 6999999999998 677654 5789999999999975211000 01011 0 23333 4444443333222
Q ss_pred CccC-------------------CCccCcEEECC--CCcCCcCCCCCCCCCCCCcEEEcCCCcCccc-------------
Q psy16110 236 GILK-------------------GCDNLLELRMD--HNRFTSIPSVSLNGPRALRILSMAYNRIGTL------------- 281 (719)
Q Consensus 236 ~~~~-------------------~l~~L~~L~L~--~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~------------- 281 (719)
..+. ....++.+.+. +|+++++|. .++++++|++|++++|.+++.
T Consensus 156 ~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 234 (636)
T 4eco_A 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEY 234 (636)
T ss_dssp GGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred hhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCH-HHhcccCCCEEECcCCccccccccccccccccch
Confidence 1111 01122222222 456666665 477777777777777777662
Q ss_pred ----CCCccc--CCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCC-CCC--cCCCccccc-cccCCCCCCEEeCC
Q psy16110 282 ----KADSFL--SQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR-LNK--LNSDTFQGG-AFNGLAKIHILNLG 351 (719)
Q Consensus 282 ----~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~--~~~~~~~~~-~l~~l~~L~~L~L~ 351 (719)
.|..+. ++++|++|++++|.+.+..|..|+++++|++|++++|+ +++ ++.. +... .+..+++|++|+++
T Consensus 235 ~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp HHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECC
T ss_pred hcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECC
Confidence 355566 77777777777777777667777777777777777776 654 3321 1000 01223677777777
Q ss_pred CCCCCccccccccCccccccc--ccccCCCccEEECCCCCCc-CcCCcchhccCCEEEccCCcccccccCccCCCC-ccE
Q psy16110 352 YNRLNKLNSDTFQGTHITIFS--FFQDFQKLKSLDLNGNFLI-NLESTGLEDTLDNLNVRDNQITTLSSSALNYKL-LTK 427 (719)
Q Consensus 352 ~n~l~~i~~~~f~~~~~~~~~--~l~~~~~L~~L~L~~n~l~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~ 427 (719)
+|+++.+ |. .+..+++|++|++++|.++ .++.+..+++|++|++++|.++.++..+..+++ |+.
T Consensus 314 ~n~l~~i------------p~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~ 381 (636)
T 4eco_A 314 YNNLKTF------------PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381 (636)
T ss_dssp SSCCSSC------------CCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCE
T ss_pred CCcCCcc------------CchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcE
Confidence 7776533 33 4556777777777777777 666555567778888888877777666666777 888
Q ss_pred EEccCCCCCCcCcccccCCC--cCcEEeCcCCCCCCCCCCCCCC-------CCCCccEEEcCCCCCCCCCchhhcCCCCc
Q psy16110 428 LDLSHNNLKELEPTAFTNVP--TLLHLNLSRNAHLSSLPVGGFD-------PLKKLEVLDLAATGLKSIPQYQFDELLNL 498 (719)
Q Consensus 428 L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~~l~~l~~~~~~-------~l~~L~~L~ls~n~l~~~~~~~~~~~~~L 498 (719)
|++++|.++.++ ..+...+ +|++|++++| .+....+..+. .+++|+.|++++|.++.++...+..+++|
T Consensus 382 L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L 459 (636)
T 4eco_A 382 LSFAHNKLKYIP-NIFDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459 (636)
T ss_dssp EECCSSCCSSCC-SCCCTTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCC
T ss_pred EEccCCcCcccc-hhhhhcccCccCEEECcCC-cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCC
Confidence 888888887654 3444433 7888888888 44443333344 56788889999998888888777788889
Q ss_pred cEEEccCCcCCCCChhhhcCCC-------CCCEEeCCCCccccccCCccC--CCCCCCEEEccCCcCCcccCCcCCCCCC
Q psy16110 499 KYLCLAHNHLTEIPEMMFKNLL-------NLTYLDLSNNNIVNLRVGSLY--GLPSMKRLDLSFNKLTTFKGDYFNTKSK 569 (719)
Q Consensus 499 ~~L~L~~n~l~~~~~~~~~~l~-------~L~~L~Ls~n~i~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 569 (719)
++|++++|+++.++...+.... +|++|++++|+++.+ |..+. .+++|++|+|++|++++++....
T Consensus 460 ~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----- 533 (636)
T 4eco_A 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSKFPTQPL----- 533 (636)
T ss_dssp SEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSSCCSSCCCGGG-----
T ss_pred CEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCCCCCCcChhhh-----
Confidence 9999999988888876665443 899999999998865 55554 88888888888888887654432
Q ss_pred CCCCCCcEEECcC------CCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCccc
Q psy16110 570 PNTSSLEELNLNN------NELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTI 636 (719)
Q Consensus 570 ~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 636 (719)
.+++|++|++++ |++.+..|..+..+++|++|++++|+++.+|... . ++|++|++++|++..+
T Consensus 534 -~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~-~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 534 -NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI-T--PNISVLDIKDNPNISI 602 (636)
T ss_dssp -GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC-C--TTCCEEECCSCTTCEE
T ss_pred -cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhH-h--CcCCEEECcCCCCccc
Confidence 257888888854 4555555555555555666655555555555431 1 4555555555555443
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.4e-42 Score=400.61 Aligned_cols=444 Identities=21% Similarity=0.277 Sum_probs=278.3
Q ss_pred cccEEEcCCCCcc-ccCcccccchhccccEEEc-CCCcCCCcCCCCCCccccc-CCCCCC--EE---------EC-cCCC
Q psy16110 165 PIRRLDFSGNALR-RLSDKLFSPHRDTLQELRL-ADNLFGDSLNPIFSTSEFH-GLVNLR--IL---------DL-SDNQ 229 (719)
Q Consensus 165 ~L~~L~Ls~n~i~-~l~~~~f~~~~~~L~~L~L-s~n~i~~~~~~~~~~~~~~-~l~~L~--~L---------~L-s~n~ 229 (719)
+++.|+|++|.+. .+|+.+ +.+++|++|+| ++|.+.+..+. ...... .+...+ .+ +. ....
T Consensus 324 ~V~~L~Ls~~~L~G~ip~~l--~~L~~L~~LdLss~N~lsG~~~~--~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~ 399 (876)
T 4ecn_A 324 RVTGLSLAGFGAKGRVPDAI--GQLTELKVLSFGTHSETVSGRLF--GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399 (876)
T ss_dssp CEEEEECTTTCCEEEECGGG--GGCTTCCEEESCCTTHHHHTTCB--TTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred CEEEEECccCCCCCcCchHH--hccccceEeeecccccccccccc--cccccccccchhHHHHHHHhhhhhhhccCcchh
Confidence 5888888888887 666554 46788888888 77776654221 100000 000000 00 00 0000
Q ss_pred Ccc-----------cCcCccCCCccCcEEECCC--CcCCcCCCCCCCCCCCCcEEEcCCCcCcc----------------
Q psy16110 230 IKA-----------IEEGILKGCDNLLELRMDH--NRFTSIPSVSLNGPRALRILSMAYNRIGT---------------- 280 (719)
Q Consensus 230 l~~-----------~~~~~~~~l~~L~~L~L~~--n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~---------------- 280 (719)
+.. ..+........++.+.+.. |+++.+|. .++++++|++|+|++|.+++
T Consensus 400 ~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~ 478 (876)
T 4ecn_A 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478 (876)
T ss_dssp SCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred hhHHHHHHhhhCccccccccccccchhhceeccccCcccchhH-HHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence 000 0000001122333333333 56666665 46677777777777777766
Q ss_pred -cCCCccc--CCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCC-CCC--cCCCccccc--cccCCCCCCEEeCCC
Q psy16110 281 -LKADSFL--SQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR-LNK--LNSDTFQGG--AFNGLAKIHILNLGY 352 (719)
Q Consensus 281 -~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~--~~~~~~~~~--~l~~l~~L~~L~L~~ 352 (719)
..|..++ ++++|++|++++|.+.+..|..|+++++|++|++++|+ +++ ++.. +... .+..+++|++|++++
T Consensus 479 g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp HHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCS
T ss_pred ccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeC
Confidence 1344444 77777777777777776666777777777777777776 654 3321 1100 123445777777777
Q ss_pred CCCCccccccccCccccccc--ccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCC-ccEEE
Q psy16110 353 NRLNKLNSDTFQGTHITIFS--FFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKL-LTKLD 429 (719)
Q Consensus 353 n~l~~i~~~~f~~~~~~~~~--~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~ 429 (719)
|+++.+ |. .+..+++|+.|++++|.++.+|.+..+++|+.|++++|.++.++.....+++ |+.|+
T Consensus 558 N~L~~i------------p~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~ 625 (876)
T 4ecn_A 558 NNLEEF------------PASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG 625 (876)
T ss_dssp SCCCBC------------CCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEE
T ss_pred CcCCcc------------CChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEE
Confidence 777533 33 4566777888888888777777666667788888888888777666666777 88888
Q ss_pred ccCCCCCCcCcccccCCC--cCcEEeCcCCCCCCCCCCC--CCC--CCCCccEEEcCCCCCCCCCchhhcCCCCccEEEc
Q psy16110 430 LSHNNLKELEPTAFTNVP--TLLHLNLSRNAHLSSLPVG--GFD--PLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCL 503 (719)
Q Consensus 430 Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~~l~~l~~~--~~~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L 503 (719)
+++|.+..++ ..+..++ +|+.|++++|...+.+|.- .+. .+++|+.|++++|.++.++...+..+++|+.|++
T Consensus 626 Ls~N~L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~L 704 (876)
T 4ecn_A 626 FSHNKLKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704 (876)
T ss_dssp CCSSCCCSCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEEC
T ss_pred CcCCCCCcCc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEEC
Confidence 8888888654 4555554 3888888888433333311 011 3458999999999999998877888999999999
Q ss_pred cCCcCCCCChhhhcCC-------CCCCEEeCCCCccccccCCccC--CCCCCCEEEccCCcCCcccCCcCCCCCCCCCCC
Q psy16110 504 AHNHLTEIPEMMFKNL-------LNLTYLDLSNNNIVNLRVGSLY--GLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSS 574 (719)
Q Consensus 504 ~~n~l~~~~~~~~~~l-------~~L~~L~Ls~n~i~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~ 574 (719)
++|.++.++...+... ++|++|++++|+++.+ |..+. .+++|+.|+|++|++++++.... .+++
T Consensus 705 s~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~------~L~~ 777 (876)
T 4ecn_A 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYNCFSSFPTQPL------NSSQ 777 (876)
T ss_dssp CSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSSCCSSCCCGGG------GCTT
T ss_pred CCCcCCccChHHhccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCCCCCccchhhh------cCCC
Confidence 9999998888766543 3899999999999965 55665 89999999999999988654433 3589
Q ss_pred CcEEECcCC------CCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccC
Q psy16110 575 LEELNLNNN------ELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTID 637 (719)
Q Consensus 575 L~~L~Ls~n------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 637 (719)
|+.|+|++| .+.+.+|..+..+++|++|+|++|++..+|... . ++|+.|||++|++..+.
T Consensus 778 L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l-~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL-T--PQLYILDIADNPNISID 843 (876)
T ss_dssp CCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC-C--SSSCEEECCSCTTCEEE
T ss_pred CCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhh-c--CCCCEEECCCCCCCccC
Confidence 999999875 444444444444555555555555444444331 1 34444444444444433
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.7e-41 Score=387.40 Aligned_cols=443 Identities=18% Similarity=0.248 Sum_probs=258.1
Q ss_pred ccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccC-----------CCccCcEEECCCCcCCcC
Q psy16110 189 DTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILK-----------GCDNLLELRMDHNRFTSI 257 (719)
Q Consensus 189 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----------~l~~L~~L~L~~n~l~~i 257 (719)
.+++.|+|+++.+.|.+| .+++++++|++|+|++|.+...+ ..++ .+..|+ ++++++.+...
T Consensus 81 ~~V~~L~L~~~~l~g~lp-----~~l~~L~~L~~L~Ls~N~~~~~~-~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~ 153 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVP-----DAIGQLTELEVLALGSHGEKVNE-RLFGPKGISANMSDEQKQKMR-MHYQKTFVDYD 153 (636)
T ss_dssp CCEEEEECTTSCCEEEEC-----GGGGGCTTCCEEESCCGGGGGTC-CSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCC
T ss_pred CCEEEEEecCcccCCcCC-----hHHhcCccceEEECcCCccccCC-ccccccccccCchHHHHHHHH-hhHHHhhhccC
Confidence 479999999999999776 47899999999999999763211 0111 134455 56666555433
Q ss_pred CCCCCC-------------------CCCCCcEEEcC--CCcCcccCCCcccCCCccCEEEccCCCCccc-----------
Q psy16110 258 PSVSLN-------------------GPRALRILSMA--YNRIGTLKADSFLSQRWLERIILRGNRLTTI----------- 305 (719)
Q Consensus 258 ~~~~l~-------------------~l~~L~~L~Ls--~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~----------- 305 (719)
++..+. ....++.+.+. .|+++++ |..++++++|++|++++|.+++.
T Consensus 154 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 232 (636)
T 4eco_A 154 PREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENS 232 (636)
T ss_dssp GGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred chhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccC-CHHHhcccCCCEEECcCCcccccccccccccccc
Confidence 322222 11112222222 4566663 55677777777777777777763
Q ss_pred ------Cccccc--CcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCC-CCccccccccCccccccccccc
Q psy16110 306 ------EGGAFN--GLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNR-LNKLNSDTFQGTHITIFSFFQD 376 (719)
Q Consensus 306 ------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~i~~~~f~~~~~~~~~~l~~ 376 (719)
.|..++ ++++|++|++++|.+.+..+. .+.++++|++|++++|+ ++. ..+|..+..
T Consensus 233 ~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-----~l~~l~~L~~L~Ls~n~~l~~----------~~lp~~~~~ 297 (636)
T 4eco_A 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-----FLKALPEMQLINVACNRGISG----------EQLKDDWQA 297 (636)
T ss_dssp HHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-----TTTTCSSCCEEECTTCTTSCH----------HHHHHHHHH
T ss_pred chhcccCchhhhhcccCCCCEEEecCCcCCccChH-----HHhcCCCCCEEECcCCCCCcc----------ccchHHHHh
Confidence 445566 677777777777766554333 35566677777777775 531 023333333
Q ss_pred C------CCccEEECCCCCCcCcCC---cchhccCCEEEccCCccc-ccccCccCCCCccEEEccCCCCCCcCcccccCC
Q psy16110 377 F------QKLKSLDLNGNFLINLES---TGLEDTLDNLNVRDNQIT-TLSSSALNYKLLTKLDLSHNNLKELEPTAFTNV 446 (719)
Q Consensus 377 ~------~~L~~L~L~~n~l~~~~~---~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 446 (719)
+ ++|++|++++|.++.+|. +..+++|++|++++|.++ .++ ....+++|+.|++++|.+..++ ..+.++
T Consensus 298 L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp-~~l~~l 375 (636)
T 4eco_A 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIP-ANFCGF 375 (636)
T ss_dssp HHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECC-TTSEEE
T ss_pred hhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccccc-Hhhhhh
Confidence 3 666666666666665554 344456666666666666 343 3333556666666666655433 335555
Q ss_pred Cc-CcEEeCcCCCCCCCCCCCCCCCC--CCccEEEcCCCCCCCCCchhhc-------CCCCccEEEccCCcCCCCChhhh
Q psy16110 447 PT-LLHLNLSRNAHLSSLPVGGFDPL--KKLEVLDLAATGLKSIPQYQFD-------ELLNLKYLCLAHNHLTEIPEMMF 516 (719)
Q Consensus 447 ~~-L~~L~L~~n~~l~~l~~~~~~~l--~~L~~L~ls~n~l~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~ 516 (719)
++ |++|++++| .++.+|.. +... ++|+.|++++|.+.+..+..+. .+++|++|++++|.++.++...+
T Consensus 376 ~~~L~~L~Ls~N-~l~~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~ 453 (636)
T 4eco_A 376 TEQVENLSFAHN-KLKYIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF 453 (636)
T ss_dssp CTTCCEEECCSS-CCSSCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHH
T ss_pred cccCcEEEccCC-cCcccchh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHH
Confidence 55 666666666 44455542 2322 2566666666665554444444 44455555555555555555555
Q ss_pred cCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCccc--
Q psy16110 517 KNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFT-- 594 (719)
Q Consensus 517 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-- 594 (719)
..+++|++|++++|+++.+.+..+.... ....++++|++|++++|+++.+ |..+.
T Consensus 454 ~~l~~L~~L~Ls~N~l~~i~~~~~~~~~----------------------~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~ 510 (636)
T 4eco_A 454 STGSPLSSINLMGNMLTEIPKNSLKDEN----------------------ENFKNTYLLTSIDLRFNKLTKL-SDDFRAT 510 (636)
T ss_dssp HTTCCCSEEECCSSCCSBCCSSSSEETT----------------------EECTTGGGCCEEECCSSCCCBC-CGGGSTT
T ss_pred ccCCCCCEEECCCCCCCCcCHHHhcccc----------------------ccccccCCccEEECcCCcCCcc-Chhhhhc
Confidence 5555555555555555543332222211 0001122555555555555533 34443
Q ss_pred CCCCccEEEcCCCCCCCcChhhhcCCCCCCEEEC------CCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCC
Q psy16110 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDL------SNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNS 668 (719)
Q Consensus 595 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L------s~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 668 (719)
.+++|++|++++|+++++|.. +..+++|++|++ ++|++.+..+..+.++++|++|++++|++..++.. +.
T Consensus 511 ~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~-~~-- 586 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSKFPTQ-PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK-IT-- 586 (636)
T ss_dssp TCTTCCEEECCSSCCSSCCCG-GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-CC--
T ss_pred cCCCcCEEECCCCCCCCcChh-hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHh-Hh--
Confidence 555666666666665554433 445566666666 56777777777888899999999999999766654 43
Q ss_pred CCCcEEECCCCcCCCcC
Q psy16110 669 SQLQIINLSFNRLEKLP 685 (719)
Q Consensus 669 ~~L~~L~Ls~N~l~~i~ 685 (719)
++|+.|||++|++.+++
T Consensus 587 ~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 587 PNISVLDIKDNPNISID 603 (636)
T ss_dssp TTCCEEECCSCTTCEEE
T ss_pred CcCCEEECcCCCCcccc
Confidence 78999999999887655
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-41 Score=384.61 Aligned_cols=439 Identities=22% Similarity=0.216 Sum_probs=279.3
Q ss_pred cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110 165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL 244 (719)
Q Consensus 165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 244 (719)
++++|++++|.|+.++...|. .+++|++|+|++|.+++ +.+++|.++++|++|+|++|+++.++.. .+++|
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L 123 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDIS-FLSELRVLRLSHNRIRS-----LDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASL 123 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTT-TCTTCCEEECCSCCCCE-----ECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTC
T ss_pred CcCEEECCCCCccccChhhhc-cCCCccEEECCCCCCCc-----CCHHHhCCCCCCCEEECCCCcCCccCcc---ccccC
Confidence 599999999999999988885 67999999999999987 3446899999999999999999998875 79999
Q ss_pred cEEECCCCcCCcCCC-CCCCCCCCCcEEEcCCCcCcccCCCcccCCCcc--CEEEccCCCC--cccCcccccCcc--cCc
Q psy16110 245 LELRMDHNRFTSIPS-VSLNGPRALRILSMAYNRIGTLKADSFLSQRWL--ERIILRGNRL--TTIEGGAFNGLA--KIH 317 (719)
Q Consensus 245 ~~L~L~~n~l~~i~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L--~~L~Ls~n~i--~~~~~~~~~~l~--~L~ 317 (719)
++|++++|+++.++. ..++++++|++|++++|.++... +..+++| ++|++++|.+ ++..+..|..+. .+
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l- 199 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL- 199 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-
T ss_pred CEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccccccccCcccccccCcceE-
Confidence 999999999998763 57999999999999999998743 4555555 9999999999 888888887654 33
Q ss_pred EEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcC---
Q psy16110 318 ILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLE--- 394 (719)
Q Consensus 318 ~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~--- 394 (719)
.++++.|.+...... ..+..+++|+.+++++|+...- .+ ......+..+++|+.++++++.+....
T Consensus 200 ~l~l~~n~~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~---~l----~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~ 268 (562)
T 3a79_B 200 HLVFHPNSLFSVQVN----MSVNALGHLQLSNIKLNDENCQ---RL----MTFLSELTRGPTLLNVTLQHIETTWKCSVK 268 (562)
T ss_dssp EEEECSSSCCCCCCE----EEESSEEEEEEEEEECCSTTHH---HH----HHHHHHHHSCSSCEEEEEEEEEECHHHHHH
T ss_pred EEEecCccchhhhhh----hcccccceEEEecccccccccc---hH----HHHHHHHhccCcceEEEecCCcCcHHHHHH
Confidence 568888887663322 1466789999999999863110 00 112234566788888887776544321
Q ss_pred --CcchhccCCEEEccCCccc-ccccCc-----cCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCC
Q psy16110 395 --STGLEDTLDNLNVRDNQIT-TLSSSA-----LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVG 466 (719)
Q Consensus 395 --~~~~~~~L~~L~l~~n~l~-~~~~~~-----~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~ 466 (719)
......+|++|++++|.++ .++... ..++.|+.++++.+.+ .++...+..+
T Consensus 269 ~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~-------------------- 327 (562)
T 3a79_B 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSV-------------------- 327 (562)
T ss_dssp HHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHH--------------------
T ss_pred HHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhh--------------------
Confidence 1111125556666655555 333332 1233333333333333 2221111111
Q ss_pred CCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcccccc--CCccCCCC
Q psy16110 467 GFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR--VGSLYGLP 544 (719)
Q Consensus 467 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~l~~l~ 544 (719)
....+|+.|++++|.+..... ...+++|++|++++|.+++..+..+..+++|++|++++|+++++. |..+..++
T Consensus 328 --~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 403 (562)
T 3a79_B 328 --FAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403 (562)
T ss_dssp --HHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT
T ss_pred --hccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC
Confidence 001234444444444433221 134455555555555555443344455555555555555555432 23455555
Q ss_pred CCCEEEccCCcCCc-ccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCC
Q psy16110 545 SMKRLDLSFNKLTT-FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYL 623 (719)
Q Consensus 545 ~L~~L~L~~n~l~~-~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 623 (719)
+|++|++++|++++ ++...+. .+++|++|++++|++++..|..+. ++|++|++++|+++.+|...+ .+++|
T Consensus 404 ~L~~L~l~~N~l~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~L 475 (562)
T 3a79_B 404 SLETLDVSLNSLNSHAYDRTCA-----WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQAL 475 (562)
T ss_dssp TCCEEECTTSCCBSCCSSCCCC-----CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCCC
T ss_pred CCCEEECCCCcCCCccChhhhc-----CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc-CCCCC
Confidence 56666666655554 4333332 235666666666666555444333 566677777776666666543 66677
Q ss_pred CEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCC
Q psy16110 624 QEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAI 660 (719)
Q Consensus 624 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 660 (719)
++|++++|+++++++..+..+++|++|++++|++.+.
T Consensus 476 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 476 QELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 7777777777766665566677777777777776653
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.9e-39 Score=353.68 Aligned_cols=368 Identities=26% Similarity=0.322 Sum_probs=247.0
Q ss_pred cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110 165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL 244 (719)
Q Consensus 165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 244 (719)
++++|+|++|.|+.++...|. .+++|++|+|++|.+.+.++ +..|.++++|++|+|++|++..+.+..|.++++|
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~i~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIR----NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL 105 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTS-SCTTCCEEECCCCSTTCEEC----TTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred ccCEEEecCCccCcCChhHhc-cCccccEEECcCCcccceEC----cccccccccCCEEeCCCCccCccChhhccCcccC
Confidence 599999999999998777774 67899999999998876543 4678999999999999999999888889999999
Q ss_pred cEEECCCCcCCc--CCCCCCCCCCCCcEEEcCCCcCcccCCCc-ccCCCccCEEEccCCCCcccCcccccCc--ccCcEE
Q psy16110 245 LELRMDHNRFTS--IPSVSLNGPRALRILSMAYNRIGTLKADS-FLSQRWLERIILRGNRLTTIEGGAFNGL--AKIHIL 319 (719)
Q Consensus 245 ~~L~L~~n~l~~--i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L 319 (719)
++|++++|.+++ .+...+..+++|++|++++|.++.+.+.. +..+++|++|++++|.++++.+..+..+ .+|+.|
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 999999999986 33445888999999999999999887765 7889999999999999998888777766 678899
Q ss_pred EcCCCCCCCcCCCccccc---cccCCCCCCEEeCCCCCCCccccccccCcccccccccc---cCCCccEEECCCCCCcCc
Q psy16110 320 NLGYNRLNKLNSDTFQGG---AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQ---DFQKLKSLDLNGNFLINL 393 (719)
Q Consensus 320 ~L~~n~l~~~~~~~~~~~---~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~---~~~~L~~L~L~~n~l~~~ 393 (719)
++++|.+..++...+... .+..+++|++|++++|+++... +..+. ..++|+.|++++|.....
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-----------~~~~~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM-----------AKRFFDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH-----------HHHHHHHTTTCCEEEEECTTCTTTSC
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccc-----------hhhhhccccccceeeEeecccccccc
Confidence 999998888766433210 1234567788888887765322 22221 125677777776644332
Q ss_pred CCcchhccCCEEEccCCcccccccCc---cCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCC
Q psy16110 394 ESTGLEDTLDNLNVRDNQITTLSSSA---LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP 470 (719)
Q Consensus 394 ~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~ 470 (719)
.. ..+.+....... ...++|+.|++++|.+.++.+.. |..
T Consensus 255 ~~------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-------------------------~~~ 297 (455)
T 3v47_A 255 SF------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV-------------------------FSH 297 (455)
T ss_dssp CT------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT-------------------------TTT
T ss_pred cc------------chhhhccCcccccccccccCceEEEecCccccccchhh-------------------------ccc
Confidence 11 001111111000 01234444555544444444444 444
Q ss_pred CCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEE
Q psy16110 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLD 550 (719)
Q Consensus 471 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 550 (719)
+++|++|++++|.++++++..|..+++|++|++++|.++++++..|..+++|++|++++|+++++.+..+..+++|++|+
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 377 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence 55555555555555555555555566666666666666666555566666666666666666666666666666666666
Q ss_pred ccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCc
Q psy16110 551 LSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFP 590 (719)
Q Consensus 551 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 590 (719)
+++|++++++...+. .+++|++|++++|++++..|
T Consensus 378 L~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 378 LDTNQLKSVPDGIFD-----RLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSSCCSCCCTTTTT-----TCTTCCEEECCSSCBCCCTT
T ss_pred CCCCccccCCHhHhc-----cCCcccEEEccCCCcccCCC
Confidence 666666665554443 23666666666666665543
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.9e-39 Score=351.98 Aligned_cols=382 Identities=24% Similarity=0.334 Sum_probs=179.3
Q ss_pred EEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCc-ccCcccccCcccCcEEEcCCC
Q psy16110 246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLT-TIEGGAFNGLAKIHILNLGYN 324 (719)
Q Consensus 246 ~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n 324 (719)
.++.++++++.+|. -.++|++|++++|.++.+.+..|.++++|++|++++|.+. .+.+.+|.++++|++|++++|
T Consensus 14 ~~~c~~~~l~~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLHQVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCSSCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcccCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 34455555555553 1245555555555555555555555555555555555554 333445555555555555555
Q ss_pred CCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCE
Q psy16110 325 RLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDN 404 (719)
Q Consensus 325 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~ 404 (719)
.++.+.+. .+.++++|++|++++|+++.... ....+..+++|++|++++|.++.+.+...
T Consensus 90 ~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------ 149 (455)
T 3v47_A 90 QFLQLETG-----AFNGLANLEVLTLTQCNLDGAVL---------SGNFFKPLTSLEMLVLRDNNIKKIQPASF------ 149 (455)
T ss_dssp TTCEECTT-----TTTTCTTCCEEECTTSCCBTHHH---------HSSTTTTCTTCCEEECCSSBCCSCCCCGG------
T ss_pred ccCccChh-----hccCcccCCEEeCCCCCCCcccc---------CcccccCcccCCEEECCCCccCccCcccc------
Confidence 55554333 23445555555555555432000 00112334444444444444433321100
Q ss_pred EEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCC--CcCcEEeCcCCCCCCCCCCCCC--------CCCCCc
Q psy16110 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNV--PTLLHLNLSRNAHLSSLPVGGF--------DPLKKL 474 (719)
Q Consensus 405 L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~~l~~l~~~~~--------~~l~~L 474 (719)
...+++|++|++++|.+.++.+..+..+ .+|+.|++++| .+..++...+ ..+++|
T Consensus 150 --------------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~~~~L 214 (455)
T 3v47_A 150 --------------FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI-TLQDMNEYWLGWEKCGNPFKNTSI 214 (455)
T ss_dssp --------------GGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC-BCTTCSTTCTTHHHHCCTTTTCEE
T ss_pred --------------cCCCCcccEEeCCCCcccccChhhhhccccccccccccccC-cccccchhhcccccccccccccee
Confidence 2235677778888887777766666554 56777777777 5555543321 123344
Q ss_pred cEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCC
Q psy16110 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554 (719)
Q Consensus 475 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 554 (719)
++|++++|.+.+..+..+... ...++|+.|++++|.+.+... ..+
T Consensus 215 ~~L~Ls~n~l~~~~~~~~~~~---------------------~~~~~L~~L~l~~~~~~~~~~--------------~~~ 259 (455)
T 3v47_A 215 TTLDLSGNGFKESMAKRFFDA---------------------IAGTKIQSLILSNSYNMGSSF--------------GHT 259 (455)
T ss_dssp EEEECTTSCCCHHHHHHHHHH---------------------TTTCCEEEEECTTCTTTSCCT--------------TCC
T ss_pred eeEecCCCcccccchhhhhcc---------------------ccccceeeEeecccccccccc--------------chh
Confidence 444444444443322222211 011444444444443322100 000
Q ss_pred cCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCc
Q psy16110 555 KLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLK 634 (719)
Q Consensus 555 ~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 634 (719)
.+.......+... ..++|++|++++|.+++..|..+..+++|++|++++|+++++++..+.++++|++|++++|.++
T Consensus 260 ~~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 336 (455)
T 3v47_A 260 NFKDPDNFTFKGL---EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336 (455)
T ss_dssp SSCCCCTTTTGGG---TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred hhccCcccccccc---cccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC
Confidence 0110000000000 1134455555555555444444555555555555555555444444444555555555555555
Q ss_pred ccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCce
Q psy16110 635 TIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLV 704 (719)
Q Consensus 635 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l 704 (719)
++++..|.++++|++|++++|+++++++..|..+++|++|++++|+++.+|+..|.++++| +|++++|++
T Consensus 337 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 4444444455555555555555555444444445555555555555555554444455555 555555555
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.3e-38 Score=342.98 Aligned_cols=407 Identities=23% Similarity=0.271 Sum_probs=240.0
Q ss_pred cccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCC-cCCCCCCCCCCCC-------------cEEEcCCC
Q psy16110 211 TSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFT-SIPSVSLNGPRAL-------------RILSMAYN 276 (719)
Q Consensus 211 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~i~~~~l~~l~~L-------------~~L~Ls~n 276 (719)
|..+ ..++|++|++++|.+..++. .++++++|++|++++|.++ .+|. .++.+++| ++|++++|
T Consensus 5 p~~~-~~~~L~~L~l~~n~l~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNLTEMPV-EAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred cccc-ccccchhhhcccCchhhCCh-hHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhhccCCCEEEecCC
Confidence 3444 36899999999999977766 5899999999999999988 4555 68887765 88888888
Q ss_pred cCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCC
Q psy16110 277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356 (719)
Q Consensus 277 ~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 356 (719)
.+++++. -.++|++|++++|.+++++. .+++|++|++++|.+++++.. .++|++|++++|+++
T Consensus 82 ~l~~lp~----~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~---------~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 82 GLSSLPE----LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL---------PPLLEYLGVSNNQLE 144 (454)
T ss_dssp CCSCCCS----CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC---------CTTCCEEECCSSCCS
T ss_pred ccccCCC----CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCC---------CCCCCEEECcCCCCC
Confidence 8888754 24688888888888888653 247888888888888776531 267888888888876
Q ss_pred ccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCC
Q psy16110 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLK 436 (719)
Q Consensus 357 ~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~ 436 (719)
.++ .+..+++|++|++++|.++.++.. ..+|++|++++|.+++++ ....+++|+.|++++|.++
T Consensus 145 ~lp-------------~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 145 KLP-------------ELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp SCC-------------CCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred CCc-------------ccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC
Confidence 543 255678888888888888876642 247888888888888765 3555788888888888887
Q ss_pred CcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhh
Q psy16110 437 ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMF 516 (719)
Q Consensus 437 ~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 516 (719)
+++.. .++|++|++++| .++.+|. +..+++|++|++++|++++++. ..++|++|++++|++++++..
T Consensus 209 ~l~~~----~~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~~-- 275 (454)
T 1jl5_A 209 KLPDL----PLSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPEL-- 275 (454)
T ss_dssp SCCCC----CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCCC--
T ss_pred cCCCC----cCcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCcc--
Confidence 76431 257888888888 6667773 6778888888888888877664 246788888888887776642
Q ss_pred cCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCC
Q psy16110 517 KNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIH 596 (719)
Q Consensus 517 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 596 (719)
.++|++|++++|+++++.. ..++|++|++++|++++++.. .++|++|++++|+++++ |.. +
T Consensus 276 --~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i~~~---------~~~L~~L~Ls~N~l~~l-p~~---~ 336 (454)
T 1jl5_A 276 --PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSLCDL---------PPSLEELNVSNNKLIEL-PAL---P 336 (454)
T ss_dssp --CTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEECCC---------CTTCCEEECCSSCCSCC-CCC---C
T ss_pred --cCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcccCC---------cCcCCEEECCCCccccc-ccc---C
Confidence 3678888888888777421 125778888888877754310 14678888888887774 332 4
Q ss_pred CCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccC--cccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEE
Q psy16110 597 SKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTID--DYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQII 674 (719)
Q Consensus 597 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 674 (719)
++|++|++++|+++.+|. .+++|++|++++|++++++ +..+ ..| +.|.+.+..+. .+++|++|
T Consensus 337 ~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l------~~L--~~n~~~~~i~~---~~~~L~~L 401 (454)
T 1jl5_A 337 PRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESV------EDL--RMNSHLAEVPE---LPQNLKQL 401 (454)
T ss_dssp TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTC------CEE--ECCC------------------
T ss_pred CcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChHHH------Hhh--hhccccccccc---ccCcCCEE
Confidence 778888888888777765 3577888888888777743 2222 222 22333333332 13678888
Q ss_pred ECCCCcCCCcChHhhcCcccc-EEecCCCce
Q psy16110 675 NLSFNRLEKLPERLFNTFLYT-NYDMAPNLV 704 (719)
Q Consensus 675 ~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l 704 (719)
|+++|+++.+|. + -..+ .+.+++|.+
T Consensus 402 ~ls~N~l~~~~~--i--P~sl~~L~~~~~~~ 428 (454)
T 1jl5_A 402 HVETNPLREFPD--I--PESVEDLRMNSERV 428 (454)
T ss_dssp -------------------------------
T ss_pred ECCCCcCCcccc--c--hhhHhheeCcCccc
Confidence 888888875431 1 0245 666667665
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.7e-37 Score=339.00 Aligned_cols=407 Identities=22% Similarity=0.281 Sum_probs=203.8
Q ss_pred CcccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCC-------------CEEECcCCCC
Q psy16110 164 IPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNL-------------RILDLSDNQI 230 (719)
Q Consensus 164 ~~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L-------------~~L~Ls~n~l 230 (719)
.++++|++++|.+..+|..+ +.+++|++|++++|.+.+.+|. .++++++| ++|++++|.+
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i--~~L~~L~~L~l~~n~~~~~~p~-----~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEA--ENVKSKTEYYNAWSEWERNAPP-----GNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCT-----TSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred ccchhhhcccCchhhCChhH--hcccchhhhhccCCcccccCCc-----ccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 36999999999999999876 5788999999999998877664 56666654 7777777777
Q ss_pred cccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccc
Q psy16110 231 KAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAF 310 (719)
Q Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 310 (719)
+.++.. .++|++|++++|.++++|. .+++|++|++++|.+++++.. .++|++|++++|.+++++ +|
T Consensus 84 ~~lp~~----~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp--~~ 149 (454)
T 1jl5_A 84 SSLPEL----PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP--EL 149 (454)
T ss_dssp SCCCSC----CTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC--CC
T ss_pred ccCCCC----cCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc--cc
Confidence 766541 3567777777777777664 236677777777777665321 256777777777777654 36
Q ss_pred cCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCC
Q psy16110 311 NGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFL 390 (719)
Q Consensus 311 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l 390 (719)
+++++|++|++++|++++++.. ..+|++|++++|+++.++ .+..+++|++|++++|.+
T Consensus 150 ~~l~~L~~L~l~~N~l~~lp~~---------~~~L~~L~L~~n~l~~l~-------------~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKKLPDL---------PPSLEFIAAGNNQLEELP-------------ELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp TTCTTCCEEECCSSCCSCCCCC---------CTTCCEEECCSSCCSSCC-------------CCTTCTTCCEEECCSSCC
T ss_pred CCCCCCCEEECCCCcCcccCCC---------cccccEEECcCCcCCcCc-------------cccCCCCCCEEECCCCcC
Confidence 7777777777777776665431 236667777766665432 134456666666666665
Q ss_pred cCcCCcchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCC
Q psy16110 391 INLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP 470 (719)
Q Consensus 391 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~ 470 (719)
++++.. .++|+.|++++|.+..++ .+..+++|++|++++| .+..+|..
T Consensus 208 ~~l~~~-------------------------~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N-~l~~l~~~---- 255 (454)
T 1jl5_A 208 KKLPDL-------------------------PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNN-LLKTLPDL---- 255 (454)
T ss_dssp SSCCCC-------------------------CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSS-CCSSCCSC----
T ss_pred CcCCCC-------------------------cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCC-cCCccccc----
Confidence 554431 124555555555555443 2455555555555555 44444431
Q ss_pred CCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEE
Q psy16110 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLD 550 (719)
Q Consensus 471 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 550 (719)
+++|+.|++++|.+++++.. .++|++|++++|.+++++.. .++|++|++++|+++++.. ..++|++|+
T Consensus 256 ~~~L~~L~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~l~~~----~~~L~~L~l~~N~l~~i~~----~~~~L~~L~ 323 (454)
T 1jl5_A 256 PPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSGLSEL----PPNLYYLNASSNEIRSLCD----LPPSLEELN 323 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSEESCC----CTTCCEEECCSSCCSEECC----CCTTCCEEE
T ss_pred ccccCEEECCCCcccccCcc----cCcCCEEECcCCccCcccCc----CCcCCEEECcCCcCCcccC----CcCcCCEEE
Confidence 24566666666666555431 25666666666666654321 2567777777776665421 114677777
Q ss_pred ccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCC
Q psy16110 551 LSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSN 630 (719)
Q Consensus 551 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 630 (719)
+++|++++++.. +++|++|++++|+++++ |. .+++|++|++++|++++++.- ...+..|. .
T Consensus 324 Ls~N~l~~lp~~---------~~~L~~L~L~~N~l~~l-p~---~l~~L~~L~L~~N~l~~l~~i----p~~l~~L~--~ 384 (454)
T 1jl5_A 324 VSNNKLIELPAL---------PPRLERLIASFNHLAEV-PE---LPQNLKQLHVEYNPLREFPDI----PESVEDLR--M 384 (454)
T ss_dssp CCSSCCSCCCCC---------CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCCC----CTTCCEEE--C
T ss_pred CCCCcccccccc---------CCcCCEEECCCCccccc-cc---hhhhccEEECCCCCCCcCCCC----hHHHHhhh--h
Confidence 777777654432 26677777777777764 33 357777777777777764320 12333333 2
Q ss_pred CCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCC
Q psy16110 631 NQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEK 683 (719)
Q Consensus 631 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 683 (719)
|.+.+..+. .+++|++|++++|++++++. + .++++.|++.+|.+..
T Consensus 385 n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~--i--P~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 385 NSHLAEVPE---LPQNLKQLHVETNPLREFPD--I--PESVEDLRMNSERVVD 430 (454)
T ss_dssp CC---------------------------------------------------
T ss_pred ccccccccc---ccCcCCEEECCCCcCCcccc--c--hhhHhheeCcCcccCC
Confidence 444433221 24678888888888776432 1 1466777777776653
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-37 Score=341.30 Aligned_cols=323 Identities=24% Similarity=0.365 Sum_probs=279.3
Q ss_pred ccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCcc-CCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCC
Q psy16110 380 LKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNA 458 (719)
Q Consensus 380 L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 458 (719)
-+.++.+++.++.+|. ...+.++.|++++|.++++++..+ .+++|++|++++|.+.++.+..|.++++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n- 90 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN- 90 (477)
T ss_dssp TTEEECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CCEEEeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-
Confidence 3567777777777765 344678888888888888866544 4888999999999998888888889999999999998
Q ss_pred CCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCC
Q psy16110 459 HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVG 538 (719)
Q Consensus 459 ~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 538 (719)
.++.++...|..+++|++|++++|.+..+.+..|..+++|++|++++|.++.+....|..+++|++|++++|+++++.+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 78888888888899999999999999888888888899999999999998888887888899999999999998888777
Q ss_pred ccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhc
Q psy16110 539 SLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL 618 (719)
Q Consensus 539 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 618 (719)
.+..+++|+.|++++|.+..++...+. .+++|++|++++|...+..+.......+|++|++++|+++.++...+.
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 245 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFK-----RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSC-----SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcc-----cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc
Confidence 788899999999999998877665554 458899999999887776666666667999999999999999988899
Q ss_pred CCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EE
Q psy16110 619 GLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NY 697 (719)
Q Consensus 619 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L 697 (719)
.+++|+.|+|++|.++++++..|.++++|++|+|++|+++++.+..|..+++|++|+|++|+++.+++..|..+++| .|
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE
T ss_pred CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE
Confidence 99999999999999999988889999999999999999999988889999999999999999999999999999999 99
Q ss_pred ecCCCceeeeccCCCccccC
Q psy16110 698 DMAPNLVFQSHLSGHRCECA 717 (719)
Q Consensus 698 ~l~~N~l~~~~~~~~~C~c~ 717 (719)
++++|++ .|+|.
T Consensus 326 ~l~~N~l--------~c~c~ 337 (477)
T 2id5_A 326 ILDSNPL--------ACDCR 337 (477)
T ss_dssp ECCSSCE--------ECSGG
T ss_pred EccCCCc--------cCccc
Confidence 9999999 67775
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=334.47 Aligned_cols=333 Identities=27% Similarity=0.396 Sum_probs=207.8
Q ss_pred CCCcccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCcc
Q psy16110 103 DFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDK 182 (719)
Q Consensus 103 ~~~~~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~ 182 (719)
.||..|+|... ...++|.+..++ .+|.+ ++ .++++|+|++|+|+.++..
T Consensus 2 ~Cp~~C~C~~~---~~~v~c~~~~l~-----~ip~~-------------------~~----~~l~~L~L~~n~l~~~~~~ 50 (477)
T 2id5_A 2 GCPPRCECSAQ---DRAVLCHRKRFV-----AVPEG-------------------IP----TETRLLDLGKNRIKTLNQD 50 (477)
T ss_dssp CCSTTCEEETT---TTEEECCSCCCS-----SCCSC-------------------CC----TTCSEEECCSSCCCEECTT
T ss_pred cccCCCeECCC---CCEEEeCCCCcC-----cCCCC-------------------CC----CCCcEEECCCCccceECHh
Confidence 46779999732 357888876554 33332 22 2588999999998888766
Q ss_pred cccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCC
Q psy16110 183 LFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSL 262 (719)
Q Consensus 183 ~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l 262 (719)
.|. .+++|++|+|++|.+.+. .+.+|.++++|++|+|++|+++.+++..|.++++|++|++++|.++.+++..+
T Consensus 51 ~~~-~l~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 124 (477)
T 2id5_A 51 EFA-SFPHLEELELNENIVSAV-----EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF 124 (477)
T ss_dssp TTT-TCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT
T ss_pred Hcc-CCCCCCEEECCCCccCEe-----ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHc
Confidence 664 456666666666666542 23456666666666666666666666556666666666666666665555556
Q ss_pred CCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCC
Q psy16110 263 NGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGL 342 (719)
Q Consensus 263 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l 342 (719)
..+++|++|++++|.++.+.+..|..+++|++|++++|.++++.+..|..+++|+.|++++|.+..++.. .+..+
T Consensus 125 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~-----~~~~l 199 (477)
T 2id5_A 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY-----SFKRL 199 (477)
T ss_dssp TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT-----CSCSC
T ss_pred cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh-----hcccC
Confidence 6666666666666666655555555666666666666665555555555555555555555555444332 22333
Q ss_pred CCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCC
Q psy16110 343 AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNY 422 (719)
Q Consensus 343 ~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 422 (719)
+ +|+.|++++|.... .+++..+..
T Consensus 200 ~-----------------------------------~L~~L~l~~~~~~~---------------------~~~~~~~~~ 223 (477)
T 2id5_A 200 Y-----------------------------------RLKVLEISHWPYLD---------------------TMTPNCLYG 223 (477)
T ss_dssp T-----------------------------------TCCEEEEECCTTCC---------------------EECTTTTTT
T ss_pred c-----------------------------------ccceeeCCCCcccc---------------------ccCcccccC
Confidence 4 44444444432211 111222233
Q ss_pred CCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEE
Q psy16110 423 KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLC 502 (719)
Q Consensus 423 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ 502 (719)
.+|+.|++++|.+++++...+..+++|+.|++++| .++.++...|..+++|+.|++++|+++.+.+..|..+++|++|+
T Consensus 224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302 (477)
T ss_dssp CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEE
T ss_pred ccccEEECcCCcccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEE
Confidence 45667777777777666666677777777777777 56666666677777777777777777777666777777777777
Q ss_pred ccCCcCCCCChhhhcCCCCCCEEeCCCCcccc
Q psy16110 503 LAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534 (719)
Q Consensus 503 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~ 534 (719)
+++|+++.++...|..+++|++|++++|++..
T Consensus 303 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 303 VSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 77777777777777777777777777777653
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.1e-35 Score=323.79 Aligned_cols=343 Identities=22% Similarity=0.379 Sum_probs=210.7
Q ss_pred cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110 165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL 244 (719)
Q Consensus 165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 244 (719)
+++.|+++++.++.+|. + ..+++|++|+|++|.+.+. . .+.++++|++|++++|++..+++ +.++++|
T Consensus 47 ~l~~L~l~~~~i~~l~~--~-~~l~~L~~L~Ls~n~l~~~-----~--~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 114 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDG--V-EYLNNLTQINFSNNQLTDI-----T--PLKNLTKLVDILMNNNQIADITP--LANLTNL 114 (466)
T ss_dssp TCCEEECCSSCCCCCTT--G-GGCTTCCEEECCSSCCCCC-----G--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred cccEEecCCCCCccCcc--h-hhhcCCCEEECCCCccCCc-----h--hhhccccCCEEECCCCccccChh--hcCCCCC
Confidence 48888888888887774 3 3567888888888877652 1 26778888888888888777765 7778888
Q ss_pred cEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCC
Q psy16110 245 LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324 (719)
Q Consensus 245 ~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 324 (719)
++|++++|.++.+++ +..+++|++|++++|.++.+. .+..+++|++|+++ |.+.++. .+.++++|++|++++|
T Consensus 115 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN 187 (466)
T ss_dssp CEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence 888888888877764 677788888888888777654 36777778888775 3444443 2677777777777777
Q ss_pred CCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCE
Q psy16110 325 RLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDN 404 (719)
Q Consensus 325 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~ 404 (719)
.++.++ .+..+++|++|++++|.++.+.. +..+++|++|++++|.+++++....+++|+.
T Consensus 188 ~l~~~~-------~l~~l~~L~~L~l~~n~l~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~ 247 (466)
T 1o6v_A 188 KVSDIS-------VLAKLTNLESLIATNNQISDITP-------------LGILTNLDELSLNGNQLKDIGTLASLTNLTD 247 (466)
T ss_dssp CCCCCG-------GGGGCTTCSEEECCSSCCCCCGG-------------GGGCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred cCCCCh-------hhccCCCCCEEEecCCccccccc-------------ccccCCCCEEECCCCCcccchhhhcCCCCCE
Confidence 776653 25566777777777776654321 3346667777777776666555445555666
Q ss_pred EEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCC
Q psy16110 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484 (719)
Q Consensus 405 L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l 484 (719)
|++++|.+++.++ ...+++|+.|++++|.+.++++ +..+++|+.|++++| .+..++. +..+++|+.|++++|.+
T Consensus 248 L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~L~~n~l 321 (466)
T 1o6v_A 248 LDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN-QLEDISP--ISNLKNLTYLTLYFNNI 321 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS-CCSCCGG--GGGCTTCSEEECCSSCC
T ss_pred EECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCC-cccCchh--hcCCCCCCEEECcCCcC
Confidence 6666665555443 3335555555555555555433 445555555555555 3444333 34455555555555555
Q ss_pred CCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCc
Q psy16110 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558 (719)
Q Consensus 485 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 558 (719)
+++++ +..+++|++|++++|.+++++ .+..+++|++|++++|++++..| +..+++|+.|++++|+++.
T Consensus 322 ~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 322 SDISP--VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SCCGG--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCchh--hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 54443 344455555555555554442 24445555555555555544433 4444555555555554443
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.9e-35 Score=325.62 Aligned_cols=302 Identities=27% Similarity=0.430 Sum_probs=182.8
Q ss_pred hhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCC
Q psy16110 187 HRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPR 266 (719)
Q Consensus 187 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~ 266 (719)
.++++++|+++++.+.. +| .+..+++|++|+|++|.++.+++ +.++++|++|++++|.++.+++ +.+++
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~------~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~ 112 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID------GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLT 112 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT------TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCT
T ss_pred HhccccEEecCCCCCcc-Cc------chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCC
Confidence 45788999998888764 22 46778888999999888888776 7888888888888888888775 78888
Q ss_pred CCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCC
Q psy16110 267 ALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIH 346 (719)
Q Consensus 267 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~ 346 (719)
+|++|++++|.++.+.+ +..+++|++|++++|.+.++. .+..+++|++|+++ |.+..+. .+..+++|+
T Consensus 113 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~-------~~~~l~~L~ 180 (466)
T 1o6v_A 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK-------PLANLTTLE 180 (466)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG-------GGTTCTTCC
T ss_pred CCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch-------hhccCCCCC
Confidence 88888888888887754 778888888888888877754 47778888888875 3443332 255666777
Q ss_pred EEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCCcc
Q psy16110 347 ILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLT 426 (719)
Q Consensus 347 ~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~ 426 (719)
+|++++|.++.++ .+..+++|++|++++|.+.+.++.+. +++|+
T Consensus 181 ~L~l~~n~l~~~~-------------~l~~l~~L~~L~l~~n~l~~~~~~~~-----------------------l~~L~ 224 (466)
T 1o6v_A 181 RLDISSNKVSDIS-------------VLAKLTNLESLIATNNQISDITPLGI-----------------------LTNLD 224 (466)
T ss_dssp EEECCSSCCCCCG-------------GGGGCTTCSEEECCSSCCCCCGGGGG-----------------------CTTCC
T ss_pred EEECcCCcCCCCh-------------hhccCCCCCEEEecCCcccccccccc-----------------------cCCCC
Confidence 7777776654331 13345555555555555544433322 34444
Q ss_pred EEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCC
Q psy16110 427 KLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506 (719)
Q Consensus 427 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n 506 (719)
.|++++|.+.++. .+..+++|+.|++++| .+..++. +..+++|+.|++++|.++.+++ +..+++|++|++++|
T Consensus 225 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 225 ELSLNGNQLKDIG--TLASLTNLTDLDLANN-QISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 297 (466)
T ss_dssp EEECCSSCCCCCG--GGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred EEECCCCCcccch--hhhcCCCCCEEECCCC-ccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCC
Confidence 4444444444431 2344445555555554 3333332 3444445555555554444433 444555555555555
Q ss_pred cCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCc
Q psy16110 507 HLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558 (719)
Q Consensus 507 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 558 (719)
+++++++ +..+++|++|++++|++++..+ +..+++|++|++++|++++
T Consensus 298 ~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 298 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp CCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred cccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence 5544433 3444555555555555444432 3344444444444444443
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-35 Score=324.83 Aligned_cols=355 Identities=26% Similarity=0.285 Sum_probs=236.1
Q ss_pred cccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCC
Q psy16110 211 TSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQR 290 (719)
Q Consensus 211 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 290 (719)
+..++++++|++|++++|.+++++ .+..+++|++|++++|.+++++ ++.+++|++|++++|.+++++ ++.++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~ 106 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLT 106 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCT
T ss_pred ccChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCC
Confidence 346788999999999999999885 4888999999999999999985 788999999999999998873 88899
Q ss_pred ccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCC-CCccccccccCcccc
Q psy16110 291 WLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNR-LNKLNSDTFQGTHIT 369 (719)
Q Consensus 291 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~i~~~~f~~~~~~ 369 (719)
+|++|++++|.+++++ ++.+++|++|++++|++++++ +..+++|++|++++|+ +..+
T Consensus 107 ~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~--------l~~l~~L~~L~l~~n~~~~~~----------- 164 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID--------VSHNTQLTELDCHLNKKITKL----------- 164 (457)
T ss_dssp TCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC--------CTTCTTCCEEECTTCSCCCCC-----------
T ss_pred cCCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec--------cccCCcCCEEECCCCCccccc-----------
Confidence 9999999999998873 788999999999999988863 4567889999998884 3222
Q ss_pred cccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcC
Q psy16110 370 IFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTL 449 (719)
Q Consensus 370 ~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 449 (719)
.+..+++|++|++++|.++.++ ...+++|+.|++++|.+++++ ...+++|+.|++++|++++++ +..+++|
T Consensus 165 ---~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L 235 (457)
T 3bz5_A 165 ---DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID---VTPLTQL 235 (457)
T ss_dssp ---CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTC
T ss_pred ---ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC---ccccCCC
Confidence 2445677888888888777765 444556666666666666552 334566666666666666543 4555566
Q ss_pred cEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCC-CCChhhhcCCCCCCEEeCC
Q psy16110 450 LHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLS 528 (719)
Q Consensus 450 ~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls 528 (719)
+.|++++| .++.++ +..+++|+.|+++.| +|+.|++++|.+. .++ +..+++|++|+++
T Consensus 236 ~~L~l~~N-~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls 294 (457)
T 3bz5_A 236 TYFDCSVN-PLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ---AEGCRKIKELDVT 294 (457)
T ss_dssp SEEECCSS-CCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE---CTTCTTCCCCCCT
T ss_pred CEEEeeCC-cCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc---ccccccCCEEECC
Confidence 66666665 444444 233445555555443 2333444444322 111 2345556666666
Q ss_pred CCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCC
Q psy16110 529 NNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNK 608 (719)
Q Consensus 529 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 608 (719)
+|+..+..|. ..++|+.|+++ .+++|++|++++|+++++ + +..+++|++|++++|+
T Consensus 295 ~n~~l~~l~~---~~~~L~~L~l~------------------~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 295 HNTQLYLLDC---QAAGITELDLS------------------QNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TCTTCCEEEC---TTCCCSCCCCT------------------TCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSC
T ss_pred CCcccceecc---CCCcceEechh------------------hcccCCEEECCCCccccc-c--cccCCcCcEEECCCCC
Confidence 5554433332 22333333332 235677777777777764 2 6667777777777777
Q ss_pred CCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCc
Q psy16110 609 FNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE 662 (719)
Q Consensus 609 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 662 (719)
++++ +.|+.|++++|.+.+.+ .+..|+.+++++|++++.+|
T Consensus 351 l~~l--------~~L~~L~l~~n~l~g~~-----~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 351 IQDF--------SSVGKIPALNNNFEAEG-----QTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp CCBC--------TTGGGSSGGGTSEEEEE-----EEEECCCBCCBTTBEEEECC
T ss_pred CCCc--------cccccccccCCcEEecc-----eeeecCccccccCcEEEEcC
Confidence 6653 34455566667666552 33456667777777776443
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.7e-35 Score=319.28 Aligned_cols=365 Identities=22% Similarity=0.253 Sum_probs=290.6
Q ss_pred chhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCC
Q psy16110 186 PHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP 265 (719)
Q Consensus 186 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l 265 (719)
+.+++|++|++++|.+++. | .+..+++|++|++++|+++.++ ++++++|++|++++|.++.++ ++++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~-~------~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l 105 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDM-T------GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPL 105 (457)
T ss_dssp HHHTTCCEEECCSSCCCCC-T------TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTC
T ss_pred hHcCCCCEEEccCCCcccC-h------hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCC
Confidence 4678999999999999862 2 5889999999999999999974 788999999999999999985 7899
Q ss_pred CCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCC-CCCcCCCccccccccCCCC
Q psy16110 266 RALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR-LNKLNSDTFQGGAFNGLAK 344 (719)
Q Consensus 266 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~l~~ 344 (719)
++|++|++++|.++.++ +..+++|++|++++|.+++++ ++.+++|++|++++|. +..+ .+..+++
T Consensus 106 ~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--------~~~~l~~ 171 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--------DVTPQTQ 171 (457)
T ss_dssp TTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--------CCTTCTT
T ss_pred CcCCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--------ccccCCc
Confidence 99999999999999873 889999999999999999873 7889999999999994 4443 2567899
Q ss_pred CCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCC
Q psy16110 345 IHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKL 424 (719)
Q Consensus 345 L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 424 (719)
|++|++++|+++.++ +..+++|+.|++++|.++.++ +..+++|++|++++|++++++ ...+++
T Consensus 172 L~~L~ls~n~l~~l~--------------l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip--~~~l~~ 234 (457)
T 3bz5_A 172 LTTLDCSFNKITELD--------------VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEID--VTPLTQ 234 (457)
T ss_dssp CCEEECCSSCCCCCC--------------CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTT
T ss_pred CCEEECCCCccceec--------------cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccccC--ccccCC
Confidence 999999999987653 446789999999999999884 666789999999999999976 556899
Q ss_pred ccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEcc
Q psy16110 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLA 504 (719)
Q Consensus 425 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~ 504 (719)
|+.|++++|++++++ ++.+++|+.|++++| +|+.|++++|...+..+ ++.+++|+.|+++
T Consensus 235 L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls 294 (457)
T 3bz5_A 235 LTYFDCSVNPLTELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVT 294 (457)
T ss_dssp CSEEECCSSCCSCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCT
T ss_pred CCEEEeeCCcCCCcC---HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECC
Confidence 999999999999986 456788999998776 45677788886544322 4678899999999
Q ss_pred CCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCC
Q psy16110 505 HNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNE 584 (719)
Q Consensus 505 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 584 (719)
+|...+..+ ...++|+.|++++| ++|++|++++|++++++ +..+++|++|++++|+
T Consensus 295 ~n~~l~~l~---~~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l~--------l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 295 HNTQLYLLD---CQAAGITELDLSQN-------------PKLVYLYLNNTELTELD--------VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TCTTCCEEE---CTTCCCSCCCCTTC-------------TTCCEEECTTCCCSCCC--------CTTCTTCSEEECCSSC
T ss_pred CCcccceec---cCCCcceEechhhc-------------ccCCEEECCCCcccccc--------cccCCcCcEEECCCCC
Confidence 996433221 13355666655544 68999999999998752 2356899999999999
Q ss_pred CCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCc-ccCCCCCCCCEEe
Q psy16110 585 LTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDD-YDYGYLPRLRKLN 651 (719)
Q Consensus 585 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~ 651 (719)
++++ +.|..|.+++|.+.+.+ .+..|+.+++++|++++..| ..+....++....
T Consensus 351 l~~l--------~~L~~L~l~~n~l~g~~-----~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~ 405 (457)
T 3bz5_A 351 IQDF--------SSVGKIPALNNNFEAEG-----QTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE 405 (457)
T ss_dssp CCBC--------TTGGGSSGGGTSEEEEE-----EEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEE
T ss_pred CCCc--------cccccccccCCcEEecc-----eeeecCccccccCcEEEEcChhHhcccCceeecc
Confidence 8873 46677788888887652 34578889999999996544 3333334444433
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.4e-34 Score=307.30 Aligned_cols=306 Identities=25% Similarity=0.310 Sum_probs=231.2
Q ss_pred CCCccEEECCCCCCcCcCC--cchhccCCEEEccCCcccccccCcc-CCCCccEEEccCCCCCCcCcccccCCCcCcEEe
Q psy16110 377 FQKLKSLDLNGNFLINLES--TGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLN 453 (719)
Q Consensus 377 ~~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 453 (719)
+++++.|+++++.++.++. +..+++|++|++++|.++.+++..+ .+++|++|++++|.+.++++..|.++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 4566666666666666665 3344667777777777766665443 377888888888888888777788888888888
Q ss_pred CcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccc
Q psy16110 454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIV 533 (719)
Q Consensus 454 L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~ 533 (719)
+++| .++.+|...|..+++|++|++++|.+..+++..+..+++|++|++++|.++.++ +..+++|++|++++|.++
T Consensus 124 L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 124 LERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred CCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccccc
Confidence 8888 777888777778888888888888888887777888888888888888887765 345678888888888776
Q ss_pred cccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcC
Q psy16110 534 NLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFP 613 (719)
Q Consensus 534 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 613 (719)
++. ..++|++|++++|.+..++... .++|++|++++|.+++. ..+..+++|++|++++|++++++
T Consensus 200 ~~~-----~~~~L~~L~l~~n~l~~~~~~~--------~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~ 264 (390)
T 3o6n_A 200 TLA-----IPIAVEELDASHNSINVVRGPV--------NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM 264 (390)
T ss_dssp EEE-----CCSSCSEEECCSSCCCEEECCC--------CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred ccC-----CCCcceEEECCCCeeeeccccc--------cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC
Confidence 642 2357888888888887765433 26788888888888775 46778888888888888888877
Q ss_pred hhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcc
Q psy16110 614 KELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL 693 (719)
Q Consensus 614 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 693 (719)
+..+..+++|++|++++|++++++. .+..+++|++|++++|+++++++. +..+++|++|++++|+++.++ +..++
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~---~~~~~ 339 (390)
T 3o6n_A 265 YHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHH 339 (390)
T ss_dssp SGGGTTCSSCCEEECCSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CCTTC
T ss_pred hhHccccccCCEEECCCCcCcccCc-ccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeC---chhhc
Confidence 7778888888888888888887765 456778888888888888876553 566788888888888888776 56777
Q ss_pred cc-EEecCCCceee
Q psy16110 694 YT-NYDMAPNLVFQ 706 (719)
Q Consensus 694 ~L-~L~l~~N~l~~ 706 (719)
.| +|++++|++..
T Consensus 340 ~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 340 TLKNLTLSHNDWDC 353 (390)
T ss_dssp CCSEEECCSSCEEH
T ss_pred cCCEEEcCCCCccc
Confidence 88 88888888843
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.8e-33 Score=302.61 Aligned_cols=308 Identities=24% Similarity=0.340 Sum_probs=193.5
Q ss_pred cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110 165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL 244 (719)
Q Consensus 165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 244 (719)
+++.|++++|.++.+|..+|. .+++|++|+|++|.+.+ +.+.+|.++++|++|+|++|.+..+++..|+++++|
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~-~l~~L~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLD-SFRQVELLNLNDLQIEE-----IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp CCSEEEEESCEESEECTHHHH-HCCCCSEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CceEEEecCCchhhCChhHhc-ccccCcEEECCCCcccc-----cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 589999999999999887774 56778888888887765 233467777777788887777777777777777777
Q ss_pred cEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCC
Q psy16110 245 LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324 (719)
Q Consensus 245 ~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 324 (719)
++|++++|.++.+|...+.++++|++|++++|.++.+.+..|..+++|++|++++|.++++. +..+++|++|++++|
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN 196 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSS
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccc
Confidence 77777777777777766677777777777777777776666777777777777777766553 344556666666666
Q ss_pred CCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCE
Q psy16110 325 RLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDN 404 (719)
Q Consensus 325 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~ 404 (719)
.++.++ ..++|++|++++|.++.++.. ..++ |+.
T Consensus 197 ~l~~~~----------~~~~L~~L~l~~n~l~~~~~~--------------~~~~----------------------L~~ 230 (390)
T 3o6n_A 197 LLSTLA----------IPIAVEELDASHNSINVVRGP--------------VNVE----------------------LTI 230 (390)
T ss_dssp CCSEEE----------CCSSCSEEECCSSCCCEEECC--------------CCSS----------------------CCE
T ss_pred cccccC----------CCCcceEEECCCCeeeecccc--------------cccc----------------------ccE
Confidence 655432 124555666665555433211 0123 444
Q ss_pred EEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCC
Q psy16110 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484 (719)
Q Consensus 405 L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l 484 (719)
|++++|.+++. +....+++|+.|++++|.+.++.+..|..+++|++|++++| .++.++.. +..+++|++|++++|.+
T Consensus 231 L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~l~~L~~L~L~~n~l 307 (390)
T 3o6n_A 231 LKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLY-GQPIPTLKVLDLSHNHL 307 (390)
T ss_dssp EECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECS-SSCCTTCCEEECCSSCC
T ss_pred EECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcc-cCCCCCCCEEECCCCcc
Confidence 44444444333 12233556666666666666665566666666666666666 55555432 34456666666666666
Q ss_pred CCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcccc
Q psy16110 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534 (719)
Q Consensus 485 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~ 534 (719)
+.++. .+..+++|++|++++|.++.++ +..+++|++|++++|++..
T Consensus 308 ~~~~~-~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 308 LHVER-NQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCCGG-GHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred eecCc-cccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence 65543 2445556666666666665554 3445566666666665554
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.1e-33 Score=294.13 Aligned_cols=304 Identities=24% Similarity=0.350 Sum_probs=220.1
Q ss_pred cCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCc
Q psy16110 376 DFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455 (719)
Q Consensus 376 ~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 455 (719)
.+++|++|+++++.+..++.+..+++|++|++++|.++++++ ...+++|++|++++|.+++++ .+.++++|++|+++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLN 118 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECT
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch--HHcCCCcCCEEECc
Confidence 455666666666666666655556666677776666666654 444677777777777776653 46677777777777
Q ss_pred CCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccc
Q psy16110 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL 535 (719)
Q Consensus 456 ~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 535 (719)
+| .+..++. +..+++|+.|++++|....... .+..+++|++|++++|.+..++. +..+++|++|++++|++.++
T Consensus 119 ~n-~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 119 ED-NISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp TS-CCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred CC-cccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence 77 5666654 5667777777777774333332 36677778888888877776665 66777888888888877766
Q ss_pred cCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChh
Q psy16110 536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKE 615 (719)
Q Consensus 536 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 615 (719)
.+ +..+++|+.|++++|.+++++. + ..+++|++|++++|.+++..+ +..+++|++|++++|.++.++
T Consensus 193 ~~--~~~l~~L~~L~l~~n~l~~~~~--~-----~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-- 259 (347)
T 4fmz_A 193 SP--LASLTSLHYFTAYVNQITDITP--V-----ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN-- 259 (347)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCCGG--G-----GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--
T ss_pred cc--ccCCCccceeecccCCCCCCch--h-----hcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--
Confidence 43 6677788888888887776544 2 234788888888888877644 778888888888888888763
Q ss_pred hhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc
Q psy16110 616 LILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT 695 (719)
Q Consensus 616 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 695 (719)
.+..+++|++|++++|++++++ .+..+++|++|++++|++++..+..|..+++|++|++++|+++.+++ +..+++|
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 335 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred hHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc
Confidence 4678888888888888888773 47778888888888888888887778888888888888888888776 6788888
Q ss_pred -EEecCCCcee
Q psy16110 696 -NYDMAPNLVF 705 (719)
Q Consensus 696 -~L~l~~N~l~ 705 (719)
++++++|++.
T Consensus 336 ~~L~l~~N~i~ 346 (347)
T 4fmz_A 336 DSADFANQVIK 346 (347)
T ss_dssp SEESSSCC---
T ss_pred ceeehhhhccc
Confidence 8888888874
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.7e-32 Score=290.20 Aligned_cols=304 Identities=22% Similarity=0.360 Sum_probs=171.0
Q ss_pred hhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCC
Q psy16110 187 HRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPR 266 (719)
Q Consensus 187 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~ 266 (719)
.+++|++|+++++.+.. + ..+..+++|++|++++|+++.+++ +.++++|++|++++|.++.++ ++..++
T Consensus 42 ~l~~L~~L~l~~~~i~~-----~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~ 110 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS-----I--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLT 110 (347)
T ss_dssp HHTTCSEEECCSSCCCC-----C--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCT
T ss_pred hcccccEEEEeCCcccc-----c--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCC
Confidence 45677777777777654 1 236667777777777777777665 677777777777777777765 366777
Q ss_pred CCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCC
Q psy16110 267 ALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIH 346 (719)
Q Consensus 267 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~ 346 (719)
+|++|++++|.++.+.+ +..+++|++|++++|......+ .+..+++|++|++++|.+..++. +..+++|+
T Consensus 111 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-------~~~l~~L~ 180 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-------IANLTDLY 180 (347)
T ss_dssp TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-------GGGCTTCS
T ss_pred cCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-------hccCCCCC
Confidence 77777777777766644 6666777777777664433322 25666666666666666655432 34455555
Q ss_pred EEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCCcc
Q psy16110 347 ILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLT 426 (719)
Q Consensus 347 ~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~ 426 (719)
+|++++|.++.++. +..+++|+.+++++|.++..+... .+++|+
T Consensus 181 ~L~l~~n~l~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~~~-----------------------~~~~L~ 224 (347)
T 4fmz_A 181 SLSLNYNQIEDISP-------------LASLTSLHYFTAYVNQITDITPVA-----------------------NMTRLN 224 (347)
T ss_dssp EEECTTSCCCCCGG-------------GGGCTTCCEEECCSSCCCCCGGGG-----------------------GCTTCC
T ss_pred EEEccCCccccccc-------------ccCCCccceeecccCCCCCCchhh-----------------------cCCcCC
Confidence 66665555543221 223444444444444444333322 244455
Q ss_pred EEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCC
Q psy16110 427 KLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506 (719)
Q Consensus 427 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n 506 (719)
+|++++|.++++++ +..+++|++|++++| .++.++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|
T Consensus 225 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 225 SLKIGNNKITDLSP--LANLSQLTWLEIGTN-QISDIN--AVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNN 297 (347)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSS
T ss_pred EEEccCCccCCCcc--hhcCCCCCEEECCCC-ccCCCh--hHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEEECcCC
Confidence 55555555554433 445555555555555 344332 2444555555555555555542 3445555555555555
Q ss_pred cCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcC
Q psy16110 507 HLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556 (719)
Q Consensus 507 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l 556 (719)
.++..+...+..+++|++|++++|++++..+ +..+++|++|++++|++
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred cCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 5555555555555555555555555555433 44555555555555544
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.3e-33 Score=314.24 Aligned_cols=305 Identities=25% Similarity=0.305 Sum_probs=244.4
Q ss_pred CCCccEEECCCCCCcCcCC--cchhccCCEEEccCCcccccccCcc-CCCCccEEEccCCCCCCcCcccccCCCcCcEEe
Q psy16110 377 FQKLKSLDLNGNFLINLES--TGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLN 453 (719)
Q Consensus 377 ~~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 453 (719)
+.+++.+++++|.+..+|+ +..++.|++|++++|.++++++..+ .+++|+.|++++|.++++++..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 4566777777777766665 3345677777777777777766444 488888888888888888888888888888888
Q ss_pred CcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccc
Q psy16110 454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIV 533 (719)
Q Consensus 454 L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~ 533 (719)
+++| .++.+|...|..+++|++|++++|.++++++..|..+++|++|++++|.++.++. ..+++|+.|++++|.++
T Consensus 130 L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 130 LERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL---SLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG---GGCTTCSEEECCSSCCS
T ss_pred eeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh---hhhhhhhhhhcccCccc
Confidence 8888 7888888878888888999999888888888788888889999999888887763 45688889999888877
Q ss_pred cccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcC
Q psy16110 534 NLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFP 613 (719)
Q Consensus 534 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 613 (719)
++. ..++|+.|++++|.++.+++... ++|+.|++++|.+++. ..+..+++|++|++++|.+++++
T Consensus 206 ~l~-----~~~~L~~L~ls~n~l~~~~~~~~--------~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~ 270 (597)
T 3oja_B 206 TLA-----IPIAVEELDASHNSINVVRGPVN--------VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM 270 (597)
T ss_dssp EEE-----CCTTCSEEECCSSCCCEEECSCC--------SCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred ccc-----CCchhheeeccCCcccccccccC--------CCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCC
Confidence 642 34578899999998887765432 6788999999988874 56888889999999999988887
Q ss_pred hhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcc
Q psy16110 614 KELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL 693 (719)
Q Consensus 614 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 693 (719)
+..+..+++|+.|+|++|.+++++. .+..+++|+.|+|++|+++++++. +..+++|++|+|++|+++.++ +..++
T Consensus 271 ~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~~-~~~l~~L~~L~L~~N~l~~~~---~~~~~ 345 (597)
T 3oja_B 271 YHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHH 345 (597)
T ss_dssp SGGGTTCSSCCEEECTTSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CCTTC
T ss_pred HHHhcCccCCCEEECCCCCCCCCCc-ccccCCCCcEEECCCCCCCccCcc-cccCCCCCEEECCCCCCCCcC---hhhcC
Confidence 7778888999999999999888765 456788999999999998876653 567889999999999988886 56778
Q ss_pred cc-EEecCCCcee
Q psy16110 694 YT-NYDMAPNLVF 705 (719)
Q Consensus 694 ~L-~L~l~~N~l~ 705 (719)
.| .|++++|++.
T Consensus 346 ~L~~L~l~~N~~~ 358 (597)
T 3oja_B 346 TLKNLTLSHNDWD 358 (597)
T ss_dssp CCSEEECCSSCEE
T ss_pred CCCEEEeeCCCCC
Confidence 88 9999999984
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5.3e-32 Score=284.10 Aligned_cols=288 Identities=24% Similarity=0.339 Sum_probs=236.3
Q ss_pred cCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcC
Q psy16110 401 TLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLA 480 (719)
Q Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls 480 (719)
.++.++++++.++.++... .+.++.|++++|.++++++..|.++++|++|++++| .++.+.+..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECC
Confidence 4566666666666555332 356778888888888877777788888888888888 6777766667788888888888
Q ss_pred CCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcccc--ccCCccCCCCCCCEEEccCCcCCc
Q psy16110 481 ATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN--LRVGSLYGLPSMKRLDLSFNKLTT 558 (719)
Q Consensus 481 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~ 558 (719)
+|.++.++...+ ++|++|++++|.++.++...|..+++|++|++++|.+.. ..+..+.++++|++|++++|.++.
T Consensus 109 ~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 888887776443 688999999999998888888889999999999998864 667788889999999999999987
Q ss_pred ccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCc
Q psy16110 559 FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDD 638 (719)
Q Consensus 559 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 638 (719)
++...+ ++|++|++++|.+++..+..+..+++|++|++++|+++++++..+..+++|++|++++|+++.++.
T Consensus 186 l~~~~~--------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 257 (330)
T 1xku_A 186 IPQGLP--------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257 (330)
T ss_dssp CCSSCC--------TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred CCcccc--------ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh
Confidence 765432 689999999999999988899999999999999999999988888999999999999999997766
Q ss_pred ccCCCCCCCCEEeCCCCcCCCCCcccCCC------CCCCcEEECCCCcCC--CcChHhhcCcccc-EEecCCCc
Q psy16110 639 YDYGYLPRLRKLNLNNNNIDAISETCFFN------SSQLQIINLSFNRLE--KLPERLFNTFLYT-NYDMAPNL 703 (719)
Q Consensus 639 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~--~i~~~~~~~l~~L-~L~l~~N~ 703 (719)
.+..+++|++|++++|+++++++..|.. .++|+.|++++|++. .+++..|..+..+ .+++++|+
T Consensus 258 -~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 258 -GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp -TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred -hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 6888999999999999999998877753 378999999999987 4788889999999 99999985
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.4e-32 Score=308.78 Aligned_cols=308 Identities=24% Similarity=0.343 Sum_probs=201.1
Q ss_pred cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110 165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL 244 (719)
Q Consensus 165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 244 (719)
+++.|++++|.++.+|..+|. .+++|++|+|++|.+.+. .+..|+++++|++|+|++|.+..+++..|+++++|
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~-~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLD-SFRQVELLNLNDLQIEEI-----DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp CCSEEEESSCEESEECTHHHH-HCCCCSEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CceEEEeeCCCCCCcCHHHHc-cCCCCcEEECCCCCCCCC-----ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 588999999999999887774 567788888888877753 23467777888888888887777777777777777
Q ss_pred cEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCC
Q psy16110 245 LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324 (719)
Q Consensus 245 ~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 324 (719)
++|+|++|.++.+|+..|+++++|++|++++|.++.+.+..|..+++|++|++++|.++++. ++.+++|+.|++++|
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccC
Confidence 77777777777777766677777777777777777777666777777777777777776654 344556666666666
Q ss_pred CCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCE
Q psy16110 325 RLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDN 404 (719)
Q Consensus 325 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~ 404 (719)
.++.++ ...+|+.|++++|.++.++.. ..++|+.
T Consensus 203 ~l~~l~----------~~~~L~~L~ls~n~l~~~~~~------------------------------------~~~~L~~ 236 (597)
T 3oja_B 203 LLSTLA----------IPIAVEELDASHNSINVVRGP------------------------------------VNVELTI 236 (597)
T ss_dssp CCSEEE----------CCTTCSEEECCSSCCCEEECS------------------------------------CCSCCCE
T ss_pred cccccc----------CCchhheeeccCCcccccccc------------------------------------cCCCCCE
Confidence 655432 234556666666655433211 1123444
Q ss_pred EEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCC
Q psy16110 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484 (719)
Q Consensus 405 L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l 484 (719)
|++++|.+++. +....+++|+.|++++|.+.++.+..|..+++|+.|++++| .+..+|.. +..+++|+.|++++|.+
T Consensus 237 L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~-~~~l~~L~~L~Ls~N~l 313 (597)
T 3oja_B 237 LKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLY-GQPIPTLKVLDLSHNHL 313 (597)
T ss_dssp EECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECS-SSCCTTCCEEECCSSCC
T ss_pred EECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcc-cccCCCCcEEECCCCCC
Confidence 44444444432 22334566777777777777666666667777777777776 55555433 34566666666666666
Q ss_pred CCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcccc
Q psy16110 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534 (719)
Q Consensus 485 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~ 534 (719)
..++. .+..+++|++|++++|.++.++ +..+++|++|++++|++..
T Consensus 314 ~~i~~-~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 314 LHVER-NQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCCGG-GHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred CccCc-ccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence 66554 3455666666666666666654 3445666666666666554
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.8e-32 Score=285.43 Aligned_cols=287 Identities=25% Similarity=0.328 Sum_probs=219.8
Q ss_pred cCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcC
Q psy16110 401 TLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLA 480 (719)
Q Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls 480 (719)
.++.++++++.++.++... .++|+.|++++|.+.++++..|.++++|++|++++| .++.+++..|..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECC
Confidence 3555555555555554332 246666777777776666666677777777777777 5666655556677777777777
Q ss_pred CCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcccc--ccCCccCCCCCCCEEEccCCcCCc
Q psy16110 481 ATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN--LRVGSLYGLPSMKRLDLSFNKLTT 558 (719)
Q Consensus 481 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~ 558 (719)
+|.++.++...+ ++|++|++++|.++.++...|..+++|++|++++|.++. ..+..+..+ +|++|++++|+++.
T Consensus 111 ~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 777776665433 678888888888888877777888888888888888864 556777777 88899999998887
Q ss_pred ccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCc
Q psy16110 559 FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDD 638 (719)
Q Consensus 559 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 638 (719)
++...+ ++|++|++++|.+++..+..+..+++|++|++++|+++++++..+..+++|++|++++|+++.++.
T Consensus 187 l~~~~~--------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 258 (332)
T 2ft3_A 187 IPKDLP--------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA 258 (332)
T ss_dssp CCSSSC--------SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT
T ss_pred cCcccc--------CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh
Confidence 765432 678899999999998888889999999999999999999888788889999999999999987766
Q ss_pred ccCCCCCCCCEEeCCCCcCCCCCcccCCC------CCCCcEEECCCCcCC--CcChHhhcCcccc-EEecCCCc
Q psy16110 639 YDYGYLPRLRKLNLNNNNIDAISETCFFN------SSQLQIINLSFNRLE--KLPERLFNTFLYT-NYDMAPNL 703 (719)
Q Consensus 639 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~--~i~~~~~~~l~~L-~L~l~~N~ 703 (719)
.+..+++|++|++++|+++++++..|.. .++|+.|++++|+++ .+++..|..++.| .+++++|+
T Consensus 259 -~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 259 -GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 5788899999999999999888777754 367899999999888 7888889999999 99999885
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.3e-30 Score=273.49 Aligned_cols=288 Identities=24% Similarity=0.344 Sum_probs=248.1
Q ss_pred CccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCcc-CCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCC
Q psy16110 379 KLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457 (719)
Q Consensus 379 ~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 457 (719)
+++.++++++.++.+|. ...+.++.|++++|.++++++..+ .+++|++|++++|.++++.+..|.++++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCc-cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 67788888887777764 234688899999999888877544 4899999999999999998889999999999999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCC--CChhhhcCCCCCCEEeCCCCccccc
Q psy16110 458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE--IPEMMFKNLLNLTYLDLSNNNIVNL 535 (719)
Q Consensus 458 ~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~~ 535 (719)
.++.+|...+ ++|++|++++|.++.++...+.++++|++|++++|.+.. +....+..+++|++|++++|.++.+
T Consensus 111 -~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 111 -QLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp -CCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred -cCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 7888887654 799999999999999999899999999999999999864 5666789999999999999999886
Q ss_pred cCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChh
Q psy16110 536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKE 615 (719)
Q Consensus 536 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 615 (719)
... + .++|++|++++|+++++.+..+. .+++|++|++++|.+++..+..+..+++|++|++++|+++.+|..
T Consensus 187 ~~~-~--~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 258 (330)
T 1xku_A 187 PQG-L--PPSLTELHLDGNKITKVDAASLK-----GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258 (330)
T ss_dssp CSS-C--CTTCSEEECTTSCCCEECTGGGT-----TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT
T ss_pred Ccc-c--cccCCEEECCCCcCCccCHHHhc-----CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh
Confidence 443 3 28999999999999988766665 359999999999999999888999999999999999999988865
Q ss_pred hhcCCCCCCEEECCCCCCcccCcccCCC------CCCCCEEeCCCCcCCC--CCcccCCCCCCCcEEECCCCc
Q psy16110 616 LILGLSYLQEIDLSNNQLKTIDDYDYGY------LPRLRKLNLNNNNIDA--ISETCFFNSSQLQIINLSFNR 680 (719)
Q Consensus 616 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~ 680 (719)
+..+++|++|++++|+++++++..|.. .+.|+.|++++|++.. +.+..|..+++++.++|++|+
T Consensus 259 -l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 259 -LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp -TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred -hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 788999999999999999998877754 3789999999999975 677889999999999999985
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.4e-30 Score=273.39 Aligned_cols=287 Identities=21% Similarity=0.327 Sum_probs=243.6
Q ss_pred CccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCcc-CCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCC
Q psy16110 379 KLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457 (719)
Q Consensus 379 ~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 457 (719)
+++.++++++.++.+|.. ..+.++.|++++|.++++++..+ .+++|++|++++|.++++.+..|.++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKE-ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCC-CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 577777777777776642 23678888888888888866444 5899999999999999998889999999999999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCC--CChhhhcCCCCCCEEeCCCCccccc
Q psy16110 458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE--IPEMMFKNLLNLTYLDLSNNNIVNL 535 (719)
Q Consensus 458 ~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~~ 535 (719)
.++.+|...+ ++|++|++++|.++.++...|..+++|++|++++|.++. +....+..+ +|++|++++|+++++
T Consensus 113 -~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 113 -HLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp -CCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred -cCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 7888887654 799999999999999998889999999999999999864 556667777 999999999999986
Q ss_pred cCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChh
Q psy16110 536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKE 615 (719)
Q Consensus 536 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 615 (719)
.. .+. ++|++|++++|.+++++...+. .+++|++|++++|.+++..+..+..+++|++|++++|+++.+|..
T Consensus 188 ~~-~~~--~~L~~L~l~~n~i~~~~~~~l~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 259 (332)
T 2ft3_A 188 PK-DLP--ETLNELHLDHNKIQAIELEDLL-----RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG 259 (332)
T ss_dssp CS-SSC--SSCSCCBCCSSCCCCCCTTSST-----TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT
T ss_pred Cc-ccc--CCCCEEECCCCcCCccCHHHhc-----CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh
Confidence 44 332 7899999999999988766654 459999999999999999888999999999999999999998875
Q ss_pred hhcCCCCCCEEECCCCCCcccCcccCCCC------CCCCEEeCCCCcCC--CCCcccCCCCCCCcEEECCCCc
Q psy16110 616 LILGLSYLQEIDLSNNQLKTIDDYDYGYL------PRLRKLNLNNNNID--AISETCFFNSSQLQIINLSFNR 680 (719)
Q Consensus 616 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l------~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~ 680 (719)
+..+++|++|++++|+++++++..|... +.|+.|++++|++. ++.+..|..+++|+.+++++|+
T Consensus 260 -l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 -LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 7889999999999999999988777653 67999999999998 6788889999999999999985
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=275.90 Aligned_cols=251 Identities=29% Similarity=0.409 Sum_probs=204.4
Q ss_pred CcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCC
Q psy16110 449 LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLS 528 (719)
Q Consensus 449 L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 528 (719)
...++.++. .++.+|... .++++.|++++|+++.++...|.++++|++|++++|.++.++...|..+++|++|+++
T Consensus 45 ~~~v~c~~~-~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRK-NLREVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSC-CCSSCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCC-CcCcCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 345555555 566666543 2567777777777777777777777778888888877777777777777888888888
Q ss_pred CCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcC-CCCCCcCcCcccCCCCccEEEcCCC
Q psy16110 529 NNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNN-NELTYLFPSSFTIHSKLKTLKLAFN 607 (719)
Q Consensus 529 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n 607 (719)
+|+++.+.+..|..+++|++|+|++|+++.++...|. .+++|++|++++ +.+..+.+..|..+++|++|++++|
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-----~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN-----RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTT-----TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhh-----hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence 8887777777777888888888888887777665554 347888888887 4556666667888999999999999
Q ss_pred CCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChH
Q psy16110 608 KFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPER 687 (719)
Q Consensus 608 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~ 687 (719)
+++.++. +..+++|++|+|++|+++++.+..|.++++|+.|++++|+++++.+..|..+++|++|+|++|+++.+++.
T Consensus 196 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 273 (440)
T 3zyj_A 196 NLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273 (440)
T ss_dssp CCSSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT
T ss_pred cCccccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh
Confidence 9998874 78889999999999999999888999999999999999999999988899999999999999999999999
Q ss_pred hhcCcccc-EEecCCCceeeeccCCCccccCC
Q psy16110 688 LFNTFLYT-NYDMAPNLVFQSHLSGHRCECAQ 718 (719)
Q Consensus 688 ~~~~l~~L-~L~l~~N~l~~~~~~~~~C~c~~ 718 (719)
.|..+++| .|+|++||+ .|+|+.
T Consensus 274 ~~~~l~~L~~L~L~~Np~--------~CdC~l 297 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHNPW--------NCNCDI 297 (440)
T ss_dssp TTSSCTTCCEEECCSSCE--------ECSSTT
T ss_pred HhccccCCCEEEcCCCCc--------cCCCCc
Confidence 99999999 999999999 899963
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=3e-29 Score=274.85 Aligned_cols=250 Identities=26% Similarity=0.389 Sum_probs=198.2
Q ss_pred cEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCC
Q psy16110 450 LHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN 529 (719)
Q Consensus 450 ~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 529 (719)
..++.++. .++.+|... .++++.|++++|+++.+++..|.++++|++|++++|.++.++...|..+++|++|++++
T Consensus 57 ~~v~c~~~-~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRR-GLSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCSS-CCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECCC-CcCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 44555555 556666432 25677777777777777766777777777777777777777777777777788888888
Q ss_pred CccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcC-CCCCCcCcCcccCCCCccEEEcCCCC
Q psy16110 530 NNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNN-NELTYLFPSSFTIHSKLKTLKLAFNK 608 (719)
Q Consensus 530 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~ 608 (719)
|+++.+.+..|..+++|++|+|++|+++.++...|. .+++|++|++++ +.+..+.+..|..+++|++|++++|+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN-----RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTT-----TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHh-----cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 777777777777778888888888877776665554 347888888887 45566656678888888888888888
Q ss_pred CCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHh
Q psy16110 609 FNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERL 688 (719)
Q Consensus 609 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 688 (719)
++.++. +..+++|++|++++|.++++.+..|.++++|++|++++|+++++.+..|..+++|+.|+|++|+++.+++..
T Consensus 208 l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 208 IKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp CSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred cccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 888764 678889999999999999888888999999999999999999988888888999999999999999999888
Q ss_pred hcCcccc-EEecCCCceeeeccCCCccccCC
Q psy16110 689 FNTFLYT-NYDMAPNLVFQSHLSGHRCECAQ 718 (719)
Q Consensus 689 ~~~l~~L-~L~l~~N~l~~~~~~~~~C~c~~ 718 (719)
|..+++| .|+|++||+ .|+|+.
T Consensus 286 ~~~l~~L~~L~L~~Np~--------~CdC~~ 308 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPW--------NCDCDI 308 (452)
T ss_dssp STTCTTCCEEECCSSCE--------ECSTTT
T ss_pred hccccCCCEEEccCCCc--------CCCCCc
Confidence 8999999 999999999 898873
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=4.1e-30 Score=272.34 Aligned_cols=279 Identities=20% Similarity=0.268 Sum_probs=220.0
Q ss_pred CCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEE
Q psy16110 422 YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYL 501 (719)
Q Consensus 422 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L 501 (719)
++.....+.+++.++.++.... ++|++|++++| .++.++...|..+++|++|++++|.++++++..|.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC---TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCccccccccc---ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 4445556777777777754322 46777788777 6777777667778888888888888888777778888888888
Q ss_pred EccCCcCCCCChhhhcCCCCCCEEeCCCCccccccC-CccCCCCCCCEEEccCC-cCCcccCCcCCCCCCCCCCCCcEEE
Q psy16110 502 CLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRV-GSLYGLPSMKRLDLSFN-KLTTFKGDYFNTKSKPNTSSLEELN 579 (719)
Q Consensus 502 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~l~~L~~L~ 579 (719)
++++|+++.++...|..+++|++|++++|+++.+.+ ..+..+++|++|++++| .++.++...+. .+++|++|+
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----~l~~L~~L~ 180 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-----GLTFLEELE 180 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-----TCCEEEEEE
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc-----CCCCCCEEE
Confidence 888888888888778888888888888888887755 57888888888888888 46666555553 358899999
Q ss_pred CcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCC---CCCCCCEEeCCCCc
Q psy16110 580 LNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYG---YLPRLRKLNLNNNN 656 (719)
Q Consensus 580 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~Ls~N~ 656 (719)
+++|.+++..|..+..+++|++|++++|+++.++...+..+++|++|++++|.+++.+...+. ..+.++.++++++.
T Consensus 181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred CCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc
Confidence 999999888888899999999999999999888877777788999999999998876554332 35678888888888
Q ss_pred CCCC----CcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeeeccCCCccccC
Q psy16110 657 IDAI----SETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHLSGHRCECA 717 (719)
Q Consensus 657 l~~~----~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~~~~~C~c~ 717 (719)
+++. .+..+..+++|++|++++|+++.+|..+|.++++| +|++++|++ .|+|.
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~--------~~~~~ 318 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW--------DCSCP 318 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB--------CCCHH
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc--------cCcCC
Confidence 7763 34457788999999999999999999888899999 999999998 77774
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=5.5e-33 Score=305.95 Aligned_cols=393 Identities=19% Similarity=0.137 Sum_probs=208.1
Q ss_pred CCCcEEEcCCCcCcccCCCc-ccCCCccCEEEccCCCCcccC----cccccCcccCcEEEcCCCCCCCcCCCcccccccc
Q psy16110 266 RALRILSMAYNRIGTLKADS-FLSQRWLERIILRGNRLTTIE----GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFN 340 (719)
Q Consensus 266 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 340 (719)
++|++|++++|.++...... +..+++|++|++++|.++... +.++..+++|++|++++|.++......+.. .+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ-GLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH-TTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH-HHh
Confidence 34566666666665543322 556666777777777666432 344556677777777777665433222111 011
Q ss_pred CC-CCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCc
Q psy16110 341 GL-AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSA 419 (719)
Q Consensus 341 ~l-~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 419 (719)
.. ++|++|++++|+++..+. ..++..+..+++|++|++++|.+++........ ..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~-------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-----------------~l 137 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGC-------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE-----------------GL 137 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGH-------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH-----------------HH
T ss_pred hCCCceeEEEccCCCCCHHHH-------HHHHHHHccCCceeEEECCCCcCchHHHHHHHH-----------------HH
Confidence 11 157777777776653221 123455566677777777777655432211000 00
Q ss_pred c-CCCCccEEEccCCCCCCcC----cccccCCCcCcEEeCcCCCCCCCCCCCCC-----CCCCCccEEEcCCCCCCCCC-
Q psy16110 420 L-NYKLLTKLDLSHNNLKELE----PTAFTNVPTLLHLNLSRNAHLSSLPVGGF-----DPLKKLEVLDLAATGLKSIP- 488 (719)
Q Consensus 420 ~-~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~~l~~l~~~~~-----~~l~~L~~L~ls~n~l~~~~- 488 (719)
. ..++|++|++++|.+++.. +..+..+++|++|++++| .++......+ ...++|++|++++|.++...
T Consensus 138 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 216 (461)
T 1z7x_W 138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216 (461)
T ss_dssp TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred hcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence 0 1223444444444444322 223334455555555555 2322111111 12345666666666665532
Q ss_pred ---chhhcCCCCccEEEccCCcCCCCC-----hhhhcCCCCCCEEeCCCCccccc----cCCccCCCCCCCEEEccCCcC
Q psy16110 489 ---QYQFDELLNLKYLCLAHNHLTEIP-----EMMFKNLLNLTYLDLSNNNIVNL----RVGSLYGLPSMKRLDLSFNKL 556 (719)
Q Consensus 489 ---~~~~~~~~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~l 556 (719)
+..+..+++|++|++++|.++... ...+..+++|++|++++|.+++. .+..+..+++|++|++++|.+
T Consensus 217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 234455667777777777665432 22223466777777777776653 234455567777777777766
Q ss_pred CcccCCcCCCCCCCCCCCCcEEECcCCCCCCc----CcCcccCCCCccEEEcCCCCCCCcChhhhcC-----CCCCCEEE
Q psy16110 557 TTFKGDYFNTKSKPNTSSLEELNLNNNELTYL----FPSSFTIHSKLKTLKLAFNKFNYFPKELILG-----LSYLQEID 627 (719)
Q Consensus 557 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~ 627 (719)
++.....+........++|++|++++|.+++. ++..+..+++|++|++++|+++......+.. .++|++|+
T Consensus 297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence 54322221111001125677777777777654 2444556677777777777776544333321 56777777
Q ss_pred CCCCCCcc----cCcccCCCCCCCCEEeCCCCcCCCCCccc----C-CCCCCCcEEECCCCcCCCc
Q psy16110 628 LSNNQLKT----IDDYDYGYLPRLRKLNLNNNNIDAISETC----F-FNSSQLQIINLSFNRLEKL 684 (719)
Q Consensus 628 Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~----~-~~l~~L~~L~Ls~N~l~~i 684 (719)
+++|.+++ ..+..+..+++|++|++++|++++..... + ....+|+.|++.++.+...
T Consensus 377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 77777764 22334556677777777777776542211 1 1234677777777666543
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=4.7e-33 Score=306.45 Aligned_cols=374 Identities=18% Similarity=0.158 Sum_probs=161.3
Q ss_pred ccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccC----cCccCCCccCcEEECCCCcCCcCCCCC-CC
Q psy16110 189 DTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIE----EGILKGCDNLLELRMDHNRFTSIPSVS-LN 263 (719)
Q Consensus 189 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~i~~~~-l~ 263 (719)
++|++|+|++|.+++... ...+..+++|++|+|++|.+.... +..+..+++|++|++++|.++...... ..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~----~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARW----AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEEEESCCCCHHHH----HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred ccceehhhhhcccCchhH----HHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 567777777777654210 122556677777777777766431 223455566666666666554311100 11
Q ss_pred CCC----CCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccc
Q psy16110 264 GPR----ALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339 (719)
Q Consensus 264 ~l~----~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 339 (719)
.++ +|++|++++|.++.... ...+.++..+++|++|++++|.++......+.....
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~--------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGC--------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGH--------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred HHhhCCCceeEEEccCCCCCHHHH--------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence 111 34444444444442110 011334444555555555555544322222111112
Q ss_pred cCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCc
Q psy16110 340 NGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSA 419 (719)
Q Consensus 340 ~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 419 (719)
...++|++|++++|+++.... ..++..+..+++|++|++++|.+++.........+ .
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~-------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l----------------~ 195 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASC-------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGL----------------K 195 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGH-------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHH----------------H
T ss_pred cCCCcceEEECCCCCCCHHHH-------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHH----------------h
Confidence 223456666666665543221 11233344455666666666655432211110000 0
Q ss_pred cCCCCccEEEccCCCCCCcC----cccccCCCcCcEEeCcCCCCCCCCC-----CCCCCCCCCccEEEcCCCCCCCCC--
Q psy16110 420 LNYKLLTKLDLSHNNLKELE----PTAFTNVPTLLHLNLSRNAHLSSLP-----VGGFDPLKKLEVLDLAATGLKSIP-- 488 (719)
Q Consensus 420 ~~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~~l~~l~-----~~~~~~l~~L~~L~ls~n~l~~~~-- 488 (719)
...++|+.|++++|.+++.. +..+..+++|++|++++| .++... ...+..+++|++|++++|.++...
T Consensus 196 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~ 274 (461)
T 1z7x_W 196 DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG 274 (461)
T ss_dssp HSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred cCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH
Confidence 01234444555555444321 223344455555555554 222211 111223445555555555554421
Q ss_pred --chhhcCCCCccEEEccCCcCCCCChhhh-----cCCCCCCEEeCCCCccccc----cCCccCCCCCCCEEEccCCcCC
Q psy16110 489 --QYQFDELLNLKYLCLAHNHLTEIPEMMF-----KNLLNLTYLDLSNNNIVNL----RVGSLYGLPSMKRLDLSFNKLT 557 (719)
Q Consensus 489 --~~~~~~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~ 557 (719)
+..+..+++|++|++++|.++......+ ...++|++|++++|.+++. .+..+..+++|++|++++|+++
T Consensus 275 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 275 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 1234445556666666655543222111 1224555555555555543 1233334455555555555544
Q ss_pred cccCCcCCCCCCCCCCCCcEEECcCCCCCC----cCcCcccCCCCccEEEcCCCCCC
Q psy16110 558 TFKGDYFNTKSKPNTSSLEELNLNNNELTY----LFPSSFTIHSKLKTLKLAFNKFN 610 (719)
Q Consensus 558 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~ 610 (719)
+.....+........++|++|++++|.+++ .++..+..+++|++|++++|+++
T Consensus 355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred cccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 322211110000002345555555555543 23334444444444554444444
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.4e-28 Score=255.17 Aligned_cols=247 Identities=26% Similarity=0.351 Sum_probs=137.5
Q ss_pred cEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCC--chhhcCCCCccEEEc
Q psy16110 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP--QYQFDELLNLKYLCL 503 (719)
Q Consensus 426 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~~~~L~~L~L 503 (719)
+.++.+++.++.++... .++|++|++++| .++.++...|..+++|++|++++|.++.+. +..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI---PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCCCC---CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 35666666666665422 245666666666 555666655666666666666666665432 233445566666666
Q ss_pred cCCcCCCCChhhhcCCCCCCEEeCCCCccccccC-CccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcC
Q psy16110 504 AHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRV-GSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNN 582 (719)
Q Consensus 504 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 582 (719)
++|.++.++.. +..+++|++|++++|++++..+ ..+..+++|++|++++|.+.......+. .+++|++|++++
T Consensus 86 s~n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~ 159 (306)
T 2z66_A 86 SFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-----GLSSLEVLKMAG 159 (306)
T ss_dssp CSCSEEEEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-----TCTTCCEEECTT
T ss_pred CCCccccChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-----cCcCCCEEECCC
Confidence 66665554432 4555666666666666555443 3455555666666666555544433332 235555666655
Q ss_pred CCCCC-cCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCC
Q psy16110 583 NELTY-LFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAIS 661 (719)
Q Consensus 583 n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 661 (719)
|.+++ ..|..+..+++|++|++++|+++++++..+..+++|++|++++|+++++++..+..+++|++|++++|++++..
T Consensus 160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence 55554 34555555555555555555555555555555555555555555555555545555555555555555555555
Q ss_pred cccCCCCC-CCcEEECCCCcCC
Q psy16110 662 ETCFFNSS-QLQIINLSFNRLE 682 (719)
Q Consensus 662 ~~~~~~l~-~L~~L~Ls~N~l~ 682 (719)
+..+..++ +|++|++++|+++
T Consensus 240 ~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 240 KQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SSSCCCCCTTCCEEECTTCCEE
T ss_pred HHHHHhhhccCCEEEccCCCee
Confidence 55555542 5555555555554
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=6.5e-28 Score=247.37 Aligned_cols=227 Identities=23% Similarity=0.334 Sum_probs=184.0
Q ss_pred cEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCC
Q psy16110 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554 (719)
Q Consensus 475 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 554 (719)
+.++.++++++.+|.. -.++|++|++++|.++.++...|..+++|++|++++|.++++.+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 5677777777777642 2457888888888888777777778888888888888888877778888888888888888
Q ss_pred c-CCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCC
Q psy16110 555 K-LTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQL 633 (719)
Q Consensus 555 ~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 633 (719)
+ ++.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|+++.+++..+..+++|++|++++|++
T Consensus 91 ~~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 91 AQLRSVDPATFH-----GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp TTCCCCCTTTTT-----TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCccccCHHHhc-----CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence 6 7766555544 358888888888888888778888888888888888888888887788888888888888888
Q ss_pred cccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeeeccCCC
Q psy16110 634 KTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHLSGH 712 (719)
Q Consensus 634 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~~~~ 712 (719)
+++++..+.++++|++|++++|+++++.+..|..+++|++|++++|+++.+++..|..+++| +|++++|++
T Consensus 166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~-------- 237 (285)
T 1ozn_A 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW-------- 237 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE--------
T ss_pred cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc--------
Confidence 88887778888888888888888888877788888888888888888888888888888888 888888888
Q ss_pred ccccC
Q psy16110 713 RCECA 717 (719)
Q Consensus 713 ~C~c~ 717 (719)
.|+|+
T Consensus 238 ~c~~~ 242 (285)
T 1ozn_A 238 VCDCR 242 (285)
T ss_dssp ECSGG
T ss_pred cCCCC
Confidence 67775
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=260.46 Aligned_cols=274 Identities=19% Similarity=0.269 Sum_probs=188.7
Q ss_pred EEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCC
Q psy16110 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484 (719)
Q Consensus 405 L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l 484 (719)
.+.+++.++.+|... .++|++|++++|.++++++..|.++++|++|++++| .++.++...|..+++|++|++++|.+
T Consensus 36 c~~~~~~l~~iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCSSCCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCcccccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcC
Confidence 444444454444322 235666666666666666656666777777777777 56666656666777777777777777
Q ss_pred CCCCchhhcCCCCccEEEccCCcCCCCCh-hhhcCCCCCCEEeCCCC-ccccccCCccCCCCCCCEEEccCCcCCcccCC
Q psy16110 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPE-MMFKNLLNLTYLDLSNN-NIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGD 562 (719)
Q Consensus 485 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 562 (719)
+.++...+.++++|++|++++|+++.++. ..|..+++|++|++++| .++.+.+..+.++++|++|++++|+++++.+.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 77776667777777777777777777766 55677777777777777 46666666777777777777777777766544
Q ss_pred cCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhh---cCCCCCCEEECCCCCCccc---
Q psy16110 563 YFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELI---LGLSYLQEIDLSNNQLKTI--- 636 (719)
Q Consensus 563 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~Ls~n~l~~~--- 636 (719)
.+. .+++|++|++++|.++...+..+..+++|++|++++|++++++...+ ...+.++.++++++.+++.
T Consensus 193 ~l~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 193 SLK-----SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp TTT-----TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred HHh-----ccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence 443 34777777777777766644445557778888888877776554332 2356778888888877652
Q ss_pred -CcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcCh
Q psy16110 637 -DDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPE 686 (719)
Q Consensus 637 -~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~ 686 (719)
.+..+..+++|++|++++|+++.+++..|..+++|++|++++|++.+-++
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 22356778889999999999888887777888899999999998886543
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=4.7e-28 Score=248.40 Aligned_cols=238 Identities=26% Similarity=0.420 Sum_probs=201.5
Q ss_pred CCcccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCccc
Q psy16110 104 FPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKL 183 (719)
Q Consensus 104 ~~~~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~ 183 (719)
||..|+|... ....++|.+..++ .+ |..++ .++++|++++|.++.++...
T Consensus 2 CP~~C~C~~~--~~~~~~c~~~~l~-----~i-------------------p~~~~----~~l~~L~l~~n~i~~~~~~~ 51 (285)
T 1ozn_A 2 CPGACVCYNE--PKVTTSCPQQGLQ-----AV-------------------PVGIP----AASQRIFLHGNRISHVPAAS 51 (285)
T ss_dssp CCTTCEEECS--SSCEEECCSSCCS-----SC-------------------CTTCC----TTCSEEECTTSCCCEECTTT
T ss_pred cCCCceECCC--CCeEEEcCcCCcc-----cC-------------------CcCCC----CCceEEEeeCCcCCccCHHH
Confidence 5668999642 2367889876555 33 32222 25999999999999999888
Q ss_pred ccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCC-CcccCcCccCCCccCcEEECCCCcCCcCCCCCC
Q psy16110 184 FSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQ-IKAIEEGILKGCDNLLELRMDHNRFTSIPSVSL 262 (719)
Q Consensus 184 f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l 262 (719)
|. .+++|++|++++|.+.+. .+..|.++++|++|++++|. +..+++..|.++++|++|++++|.++.+++..+
T Consensus 52 ~~-~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 125 (285)
T 1ozn_A 52 FR-ACRNLTILWLHSNVLARI-----DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF 125 (285)
T ss_dssp TT-TCTTCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cc-cCCCCCEEECCCCcccee-----CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh
Confidence 85 679999999999999863 34578999999999999997 888888889999999999999999999988789
Q ss_pred CCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCC
Q psy16110 263 NGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGL 342 (719)
Q Consensus 263 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l 342 (719)
.++++|++|++++|.++.+++..|..+++|++|++++|.++++++.+|..+++|++|++++|.++++.+. .+..+
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l 200 (285)
T 1ozn_A 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH-----AFRDL 200 (285)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-----TTTTC
T ss_pred hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh-----HccCc
Confidence 9999999999999999999888899999999999999999999988899999999999999999988665 46678
Q ss_pred CCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCc
Q psy16110 343 AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL 393 (719)
Q Consensus 343 ~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~ 393 (719)
++|+.|++++|+++.++. ..+..+++|+.|++++|.+...
T Consensus 201 ~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 201 GRLMTLYLFANNLSALPT-----------EALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTCCEEECCSSCCSCCCH-----------HHHTTCTTCCEEECCSSCEECS
T ss_pred ccccEeeCCCCcCCcCCH-----------HHcccCcccCEEeccCCCccCC
Confidence 999999999999876543 3355688999999999987743
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3.6e-27 Score=257.48 Aligned_cols=247 Identities=25% Similarity=0.401 Sum_probs=141.5
Q ss_pred CCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCC
Q psy16110 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA 481 (719)
Q Consensus 402 L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~ 481 (719)
...++.++..++.+|... .++++.|++++|++.++.+..|.++++|++|++++| .+..++...|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCC
Confidence 445666666666666433 255666666666666666666666666666666666 55555555556666666666666
Q ss_pred CCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCC-CccccccCCccCCCCCCCEEEccCCcCCccc
Q psy16110 482 TGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN-NNIVNLRVGSLYGLPSMKRLDLSFNKLTTFK 560 (719)
Q Consensus 482 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 560 (719)
|+++.++...|..+++|++|++++|.++.++...|..+++|++|++++ +.+..+.+..|.++++|++|++++|+++.++
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 666666555556666666666666666655555555666666666665 3344444445555566666666666555443
Q ss_pred CCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCccc
Q psy16110 561 GDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYD 640 (719)
Q Consensus 561 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 640 (719)
. +..+++|++|+|++|.+++..+..|..+++|++|++++|+++.+++..|.++++|+.|+|++|+++++++..
T Consensus 202 ~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 274 (440)
T 3zyj_A 202 N-------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274 (440)
T ss_dssp C-------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred c-------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence 1 122355555555555555555555555555555555555555555555555555555555555555555545
Q ss_pred CCCCCCCCEEeCCCCcCC
Q psy16110 641 YGYLPRLRKLNLNNNNID 658 (719)
Q Consensus 641 l~~l~~L~~L~Ls~N~l~ 658 (719)
|..+++|+.|+|++|++.
T Consensus 275 ~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 275 FTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TSSCTTCCEEECCSSCEE
T ss_pred hccccCCCEEEcCCCCcc
Confidence 555555555555555544
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.6e-27 Score=257.55 Aligned_cols=247 Identities=26% Similarity=0.388 Sum_probs=133.2
Q ss_pred CCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCC
Q psy16110 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA 481 (719)
Q Consensus 402 L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~ 481 (719)
...++.++..++.++... .++++.|++++|+++++.+..|.++++|++|++++| .+..++...|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCC
Confidence 345666666666665432 246666666666666666666666666666666666 55555555566666666666666
Q ss_pred CCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCC-CccccccCCccCCCCCCCEEEccCCcCCccc
Q psy16110 482 TGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN-NNIVNLRVGSLYGLPSMKRLDLSFNKLTTFK 560 (719)
Q Consensus 482 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 560 (719)
|.++.++...|..+++|++|++++|.++.++...|..+++|++|++++ +.+..+.+..|.++++|++|++++|++++++
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 666666555555566666666666666655555555556666666655 3344444444555555555555555554432
Q ss_pred CCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCccc
Q psy16110 561 GDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYD 640 (719)
Q Consensus 561 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 640 (719)
. +..+++|++|++++|.+++..|..|..+++|++|++++|+++.+++..|.++++|+.|+|++|+++++++..
T Consensus 213 ~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 213 N-------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp C-------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred c-------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 1 112344555555555544444444444444444444444444444444444444444444444444444444
Q ss_pred CCCCCCCCEEeCCCCcCC
Q psy16110 641 YGYLPRLRKLNLNNNNID 658 (719)
Q Consensus 641 l~~l~~L~~L~Ls~N~l~ 658 (719)
|..+++|+.|+|++|++.
T Consensus 286 ~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp STTCTTCCEEECCSSCEE
T ss_pred hccccCCCEEEccCCCcC
Confidence 444444444444444443
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2e-27 Score=246.49 Aligned_cols=280 Identities=26% Similarity=0.323 Sum_probs=167.0
Q ss_pred CEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCC--CCCCCCCCCccEEEcC
Q psy16110 403 DNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLP--VGGFDPLKKLEVLDLA 480 (719)
Q Consensus 403 ~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~--~~~~~~l~~L~~L~ls 480 (719)
+.++.+++.++.++... .++|++|++++|.++++++..|.++++|++|++++| .++.++ ...+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECC
Confidence 45666666666665432 256666777766666666666666666777777666 444332 1123345666677777
Q ss_pred CCCCCCCCchhhcCCCCccEEEccCCcCCCCCh-hhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCc-
Q psy16110 481 ATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE-MMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT- 558 (719)
Q Consensus 481 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~- 558 (719)
+|.+..++. .+..+++|++|++++|.++.++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 87 ~n~i~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEEEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccccChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 666666554 35566667777777666666554 445666667777777666666666666666667777776666654
Q ss_pred ccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCc
Q psy16110 559 FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDD 638 (719)
Q Consensus 559 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 638 (719)
..+..+. .+++|++|++++|.+++..|..+..+++|++|++++|+++++++..+..+++|++|++++|++++..+
T Consensus 166 ~~~~~~~-----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 166 FLPDIFT-----ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp EECSCCT-----TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred cchhHHh-----hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 2222222 34666677777776666666666666667777777766666666556666667777777776666666
Q ss_pred ccCCCCC-CCCEEeCCCCcCCCCCc--ccCCCCCCCcEEECCCCcCCCcChHhhcC
Q psy16110 639 YDYGYLP-RLRKLNLNNNNIDAISE--TCFFNSSQLQIINLSFNRLEKLPERLFNT 691 (719)
Q Consensus 639 ~~l~~l~-~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 691 (719)
..+..++ +|++|++++|++++..+ .....+...+.+.+..+.+.+..+..+++
T Consensus 241 ~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp SSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred HHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 5666663 66677777766665422 11111233334444555555433333343
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=1.8e-28 Score=254.77 Aligned_cols=252 Identities=23% Similarity=0.259 Sum_probs=170.1
Q ss_pred CCccEEEccCCCCCC--cCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccE
Q psy16110 423 KLLTKLDLSHNNLKE--LEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKY 500 (719)
Q Consensus 423 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 500 (719)
.+++.|++++|.+.+ ..+..+.++++|++|++++ .|.+.+..+..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~------------------------~n~l~~~~p~~l~~l~~L~~ 105 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG------------------------INNLVGPIPPAIAKLTQLHY 105 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEE------------------------ETTEESCCCGGGGGCTTCSE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCC------------------------CCcccccCChhHhcCCCCCE
Confidence 356666666666665 4445555555666665553 13333333334555555555
Q ss_pred EEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCC-CCcEEE
Q psy16110 501 LCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTS-SLEELN 579 (719)
Q Consensus 501 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~-~L~~L~ 579 (719)
|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+.. ++ .|++|+
T Consensus 106 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-----l~~~L~~L~ 180 (313)
T 1ogq_A 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-----FSKLFTSMT 180 (313)
T ss_dssp EEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-----CCTTCCEEE
T ss_pred EECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-----hhhcCcEEE
Confidence 555555555333334555666666666666666555556666666666666666665322222221 24 677777
Q ss_pred CcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCC
Q psy16110 580 LNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDA 659 (719)
Q Consensus 580 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 659 (719)
+++|.+++..|..+..++ |++|++++|++++..+..+..+++|++|++++|.+++..+. +..+++|++|++++|++++
T Consensus 181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE
T ss_pred CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC
Confidence 777777777777777776 88888888888877777788888888888888888876663 7778889999999998887
Q ss_pred CCcccCCCCCCCcEEECCCCcCC-CcChHhhcCcccc-EEecCCCceeee
Q psy16110 660 ISETCFFNSSQLQIINLSFNRLE-KLPERLFNTFLYT-NYDMAPNLVFQS 707 (719)
Q Consensus 660 ~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L-~L~l~~N~l~~~ 707 (719)
..|..|..+++|++|+|++|+++ .+|.. ..++.| .+++++|+...+
T Consensus 259 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSSEEES
T ss_pred cCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCCCccC
Confidence 77777888889999999999888 55542 678888 889999986444
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=1.8e-28 Score=254.68 Aligned_cols=247 Identities=21% Similarity=0.248 Sum_probs=143.1
Q ss_pred ccCCEEEccCCcccc---cccCccCCCCccEEEccC-CCCCCcCcccccCCCcCcEEeCcCCCCCC-CCCCCCCCCCCCc
Q psy16110 400 DTLDNLNVRDNQITT---LSSSALNYKLLTKLDLSH-NNLKELEPTAFTNVPTLLHLNLSRNAHLS-SLPVGGFDPLKKL 474 (719)
Q Consensus 400 ~~L~~L~l~~n~l~~---~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~~l~-~l~~~~~~~l~~L 474 (719)
..++.|++++|.+++ ++..+..+++|++|++++ |.+.+..+..|.++++|++|++++| .+. .+|. .|..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~-~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPD-FLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCG-GGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCH-HHhCCCCC
Confidence 479999999999985 555566699999999995 8888877888888888888888888 444 4443 35666667
Q ss_pred cEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCC-CCCEEeCCCCccccccCCccCCCCCCCEEEccC
Q psy16110 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLL-NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSF 553 (719)
Q Consensus 475 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 553 (719)
++|++++|.+++..+..+..+++|++|++++|++++..+..+..++ +|++|++++|++++..|..+..++ |++|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 7777776666654444566666666666666666532223344454 566666666666555555555544 55555555
Q ss_pred CcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCC
Q psy16110 554 NKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQL 633 (719)
Q Consensus 554 n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 633 (719)
|++++..+..+. .+++|++|++++|.+++..+. +..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus 207 N~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 207 NMLEGDASVLFG-----SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp SEEEECCGGGCC-----TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred CcccCcCCHHHh-----cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 555443333332 224455555555554444332 44444444444444444433333344444444444444444
Q ss_pred cccCcccCCCCCCCCEEeCCCCc
Q psy16110 634 KTIDDYDYGYLPRLRKLNLNNNN 656 (719)
Q Consensus 634 ~~~~~~~l~~l~~L~~L~Ls~N~ 656 (719)
++..+.. ..+++|+.+++++|+
T Consensus 281 ~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 281 CGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEECCCS-TTGGGSCGGGTCSSS
T ss_pred cccCCCC-ccccccChHHhcCCC
Confidence 4333321 344444444444444
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=6.6e-26 Score=254.79 Aligned_cols=267 Identities=26% Similarity=0.277 Sum_probs=179.8
Q ss_pred CccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCC
Q psy16110 379 KLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNA 458 (719)
Q Consensus 379 ~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 458 (719)
+++.|++++|.++.+|... .++|+.|++++|.++.++. .+++|++|++++|++++++. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l-~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N- 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN- 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCC-CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-
T ss_pred CCcEEEecCCCcCccChhh-CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-
Confidence 3556666666655555421 2456666666666665554 35666777777776666543 4566777777776
Q ss_pred CCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCC
Q psy16110 459 HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVG 538 (719)
Q Consensus 459 ~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 538 (719)
.+..+|. .+++|+.|++++|+++.++.. +++|++|++++|.++.++. .+++|+.|++++|+++.+.
T Consensus 112 ~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~-- 177 (622)
T 3g06_A 112 PLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP-- 177 (622)
T ss_dssp CCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC--
T ss_pred cCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCc--
Confidence 5666654 346677777777777766642 3677777777777776653 2467777777777777653
Q ss_pred ccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhc
Q psy16110 539 SLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL 618 (719)
Q Consensus 539 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 618 (719)
..+++|+.|++++|.+++++.. .++|+.|++++|.++.+. . .+++|++|++++|+++.+| .
T Consensus 178 --~~~~~L~~L~Ls~N~l~~l~~~---------~~~L~~L~L~~N~l~~l~-~---~~~~L~~L~Ls~N~L~~lp----~ 238 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQLASLPTL---------PSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSLP----V 238 (622)
T ss_dssp --CCCTTCCEEECCSSCCSCCCCC---------CTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCSCCC----C
T ss_pred --ccCCCCcEEECCCCCCCCCCCc---------cchhhEEECcCCcccccC-C---CCCCCCEEEccCCccCcCC----C
Confidence 3457777777777777765431 267788888888777653 2 2467888888888888776 3
Q ss_pred CCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCc
Q psy16110 619 GLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTF 692 (719)
Q Consensus 619 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 692 (719)
.+++|+.|++++|+++.++. .+++|+.|++++|+++.+++ .|.++++|+.|+|++|+++..++..|..+
T Consensus 239 ~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCG-GGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCH-HHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 45778888888888887665 45778888888888886654 47778888888888888886666555533
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.4e-25 Score=252.07 Aligned_cols=258 Identities=28% Similarity=0.325 Sum_probs=225.6
Q ss_pred ccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEc
Q psy16110 400 DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479 (719)
Q Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~l 479 (719)
..++.|++++|.++.++.... ++|+.|++++|.++.++. .+++|++|++++| .++.+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC----CCTTCCEEEE
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC----CCCCCCEEEC
Confidence 469999999999998886554 899999999999998865 5789999999999 7888886 5799999999
Q ss_pred CCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcc
Q psy16110 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTF 559 (719)
Q Consensus 480 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~ 559 (719)
++|.++.++. .+++|++|++++|+++.++.. +++|++|++++|+++++.. ..++|+.|++++|.++.+
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCC
Confidence 9999999876 578999999999999998863 5899999999999988632 357899999999999987
Q ss_pred cCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcc
Q psy16110 560 KGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDY 639 (719)
Q Consensus 560 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 639 (719)
+ . .+++|+.|++++|.++++ |. ..++|+.|++++|.++.++. .+++|+.|++++|++++++
T Consensus 177 ~-~--------~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp-- 237 (622)
T 3g06_A 177 P-M--------LPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP-- 237 (622)
T ss_dssp C-C--------CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC--
T ss_pred c-c--------cCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC--
Confidence 6 1 248899999999999986 33 35899999999999999884 3589999999999999877
Q ss_pred cCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceee
Q psy16110 640 DYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQ 706 (719)
Q Consensus 640 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~ 706 (719)
..+++|+.|++++|+|+.+++ .+++|+.|+|++|+|+.+|.. |.++++| .|+|++|++..
T Consensus 238 --~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 238 --VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp --CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGG-GGGSCTTCEEECCSCCCCH
T ss_pred --CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHH-HhhccccCEEEecCCCCCC
Confidence 456899999999999998876 468999999999999999874 7899999 99999999975
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=8.8e-26 Score=229.39 Aligned_cols=204 Identities=25% Similarity=0.383 Sum_probs=134.8
Q ss_pred ccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcE
Q psy16110 498 LKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEE 577 (719)
Q Consensus 498 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~ 577 (719)
.++++++++.++.+|... .+++++|++++|+++.+.+..|.++++|++|++++|+++.++...|.. +++|++
T Consensus 18 ~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~-----l~~L~~ 89 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE-----LKNLET 89 (270)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSS-----CTTCCE
T ss_pred CCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcC-----CCCCCE
Confidence 445555555555554321 145566666666666555555666666666666666666555444432 366666
Q ss_pred EECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcC
Q psy16110 578 LNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNI 657 (719)
Q Consensus 578 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 657 (719)
|++++|.++++.+..|..+++|++|++++|+++.+++..+..+++|++|++++|.++++++..|..+++|++|++++|++
T Consensus 90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence 66666666666566666677777777777777777666667777777777777777777666667777777777777777
Q ss_pred CCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeeeccCCCccccC
Q psy16110 658 DAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHLSGHRCECA 717 (719)
Q Consensus 658 ~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~~~~~C~c~ 717 (719)
+++++..|..+++|++|++++|+++.+++..|..+++| .|++++||+ .|+|.
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~c~c~ 222 (270)
T 2o6q_A 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW--------DCTCN 222 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB--------CCSSS
T ss_pred cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe--------eCCCc
Confidence 77776667777777777777777777777777777777 777777777 66665
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=6.1e-26 Score=231.47 Aligned_cols=215 Identities=25% Similarity=0.335 Sum_probs=106.5
Q ss_pred CCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCC
Q psy16110 459 HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVG 538 (719)
Q Consensus 459 ~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 538 (719)
.+.++|... .++|++|++++|+++.++...|.++++|++|++++|.++.++...|..+++|++|++++|+++++.+.
T Consensus 18 ~l~~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 18 NFYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp CCSSCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CccccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 444455432 23456666666666555555555555666666666655555555555555555555555555555555
Q ss_pred ccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCc-CcCcccCCCCccEEEcCCCCCCCcChhhh
Q psy16110 539 SLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYL-FPSSFTIHSKLKTLKLAFNKFNYFPKELI 617 (719)
Q Consensus 539 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 617 (719)
.+.++++|++|++++|.++.++...+. .+++|++|++++|.+++. .|..+..+++|++|++++|+++++++..+
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIG-----HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCT-----TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred hhcCCccccEEECCCCCccccCchhcc-----cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 555555555555555555544332222 235555555555555443 24444455555555555555554444434
Q ss_pred cCCCCCC----EEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCC
Q psy16110 618 LGLSYLQ----EIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE 682 (719)
Q Consensus 618 ~~l~~L~----~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 682 (719)
..+++|+ +|++++|.++++++..+.. .+|++|++++|+++++++..|..+++|++|++++|+++
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred hhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 3333333 4444444444444433222 24444444444444444444444444444444444444
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=4.8e-27 Score=244.59 Aligned_cols=266 Identities=21% Similarity=0.225 Sum_probs=207.7
Q ss_pred CccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEc
Q psy16110 424 LLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCL 503 (719)
Q Consensus 424 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L 503 (719)
+++..+++.+.+.......+..+++|++|++++| .++.+++..|..+++|++|++++|.++++++ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 3566677777777666666677788999999988 7777776667888889999999998887664 778888999999
Q ss_pred cCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCC
Q psy16110 504 AHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583 (719)
Q Consensus 504 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n 583 (719)
++|.+++++. .++|++|++++|++++..+.. +++|++|++++|+++.+++..+.. +++|++|++++|
T Consensus 88 s~n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~-----l~~L~~L~Ls~N 154 (317)
T 3o53_A 88 NNNYVQELLV-----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGC-----RSRVQYLDLKLN 154 (317)
T ss_dssp CSSEEEEEEE-----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGG-----GSSEEEEECTTS
T ss_pred cCCccccccC-----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhc-----cCCCCEEECCCC
Confidence 9888876653 378889999988888875543 577888899988888776655543 488888999988
Q ss_pred CCCCcCcCccc-CCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCc
Q psy16110 584 ELTYLFPSSFT-IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE 662 (719)
Q Consensus 584 ~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 662 (719)
.+++..+..+. .+++|++|++++|+++.++.. ..+++|++|++++|+++++++. +..+++|++|++++|+++++++
T Consensus 155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~ 231 (317)
T 3o53_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK 231 (317)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT
T ss_pred CCCcccHHHHhhccCcCCEEECCCCcCcccccc--cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhh
Confidence 88887666664 678888999988888887543 3578888999998888888774 7788888899998888887755
Q ss_pred ccCCCCCCCcEEECCCCcCC-CcChHhhcCcccc-EEecCCCceeeecc
Q psy16110 663 TCFFNSSQLQIINLSFNRLE-KLPERLFNTFLYT-NYDMAPNLVFQSHL 709 (719)
Q Consensus 663 ~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L-~L~l~~N~l~~~~~ 709 (719)
.+..+++|+.|++++|+++ ...+.++..++.| .+++++|+-..+..
T Consensus 232 -~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 232 -ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp -TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred -HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 4777888889999888888 5555677888888 88888665544443
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1e-27 Score=249.65 Aligned_cols=260 Identities=23% Similarity=0.250 Sum_probs=202.8
Q ss_pred cCCEEEccCCcccccccCccC-CCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEc
Q psy16110 401 TLDNLNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479 (719)
Q Consensus 401 ~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~l 479 (719)
.++..+++.+.+.......+. +++|++|++++|.++++.+..|.++++|++|++++| .+..+++ |..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh--hhhcCCCCEEEC
Confidence 355556666666655444443 678889999999888888888888889999999888 5655554 778888999999
Q ss_pred CCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcc
Q psy16110 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTF 559 (719)
Q Consensus 480 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~ 559 (719)
++|.+++++. .++|++|++++|.++.++.. .+++|++|++++|+++++.+..+..+++|++|++++|.++++
T Consensus 88 s~n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEEE-----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCccccccC-----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 9888877653 37888999999888877653 357888999999988888777888888899999999888876
Q ss_pred cCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcc
Q psy16110 560 KGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDY 639 (719)
Q Consensus 560 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 639 (719)
+...+.. .+++|++|++++|.+++... ...+++|++|++++|+++++++. +..+++|++|++++|++++++.
T Consensus 160 ~~~~~~~----~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~- 231 (317)
T 3o53_A 160 NFAELAA----SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK- 231 (317)
T ss_dssp EGGGGGG----GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-
T ss_pred cHHHHhh----ccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhh-
Confidence 6554421 24788999999998887732 33588899999999988888876 7788889999999998888765
Q ss_pred cCCCCCCCCEEeCCCCcCC-CCCcccCCCCCCCcEEECCCC
Q psy16110 640 DYGYLPRLRKLNLNNNNID-AISETCFFNSSQLQIINLSFN 679 (719)
Q Consensus 640 ~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N 679 (719)
.+..+++|+.|++++|++. +..+..+..+++|+.+++++|
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 5788888999999999888 555666777888888888754
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=3.3e-25 Score=227.14 Aligned_cols=198 Identities=26% Similarity=0.312 Sum_probs=96.6
Q ss_pred CCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCC
Q psy16110 495 LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSS 574 (719)
Q Consensus 495 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~ 574 (719)
++++++++++++.++.+|... .+++++|++++|.++++.+..|..+++|++|++++|.++.++.. ..+++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~l~~ 78 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-------GTLPV 78 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-------SCCTT
T ss_pred cCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-------CCCCc
Confidence 334444444444444443321 13444444444444444444444444444444444444443321 12344
Q ss_pred CcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCC
Q psy16110 575 LEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN 654 (719)
Q Consensus 575 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 654 (719)
|++|++++|+++.+ |..+..+++|++|++++|+++.+++..|.++++|++|++++|+++++++..|..+++|+.|++++
T Consensus 79 L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 55555555555433 33444555555555555555555544455555555555555555555554455555555555555
Q ss_pred CcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCce
Q psy16110 655 NNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLV 704 (719)
Q Consensus 655 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l 704 (719)
|+++++++..|..+++|++|+|++|+++.+|..+| .++.| .+++++||+
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPW 207 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCB
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhc-ccccCCeEEeCCCCc
Confidence 55555555545555555555555555555555443 23355 555555555
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=9.6e-29 Score=281.02 Aligned_cols=385 Identities=16% Similarity=0.118 Sum_probs=171.0
Q ss_pred CCCCCcEEEcCCCcCcccCCCcccC-C-CccCEEEccCCC-CcccC-cccccCcccCcEEEcCCCCCCCcCCCccccccc
Q psy16110 264 GPRALRILSMAYNRIGTLKADSFLS-Q-RWLERIILRGNR-LTTIE-GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339 (719)
Q Consensus 264 ~l~~L~~L~Ls~n~i~~~~~~~~~~-l-~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 339 (719)
.+++|++|++++|.++......+.. + .+|++|++++|. ++... +.....+++|++|++++|.+++.+...+.. ..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE-LA 188 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH-HH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH-HH
Confidence 3455555555555544333333332 2 236666666554 11100 111124556666666666554432211111 22
Q ss_pred cCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCC-cchhccCCEEEccCCccc----c
Q psy16110 340 NGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES-TGLEDTLDNLNVRDNQIT----T 414 (719)
Q Consensus 340 ~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~L~~L~l~~n~l~----~ 414 (719)
..+++|++|++++|.++.+.. ..++..+..+++|++|++++|.+..++. ....++|++|+++..... .
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~-------~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 261 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISP-------KDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPE 261 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCH-------HHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred hcCCCccEEEeeccCCCccCH-------HHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHH
Confidence 345566666666665543221 1223334455666666666665554432 233345555555532211 1
Q ss_pred cccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCC-CCCCCCCCccEEEcCCCCCCC-CCchhh
Q psy16110 415 LSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPV-GGFDPLKKLEVLDLAATGLKS-IPQYQF 492 (719)
Q Consensus 415 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~-~~~~~l~~L~~L~ls~n~l~~-~~~~~~ 492 (719)
.......+++|+.++++++....+ +..+..+++|++|++++|. ++.... ..+..+++|+.|+++++ +.. ......
T Consensus 262 ~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~ 338 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYMGPNEM-PILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLA 338 (592)
T ss_dssp SSSCCCCCTTCCEEEETTCCTTTG-GGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHH
T ss_pred HHHHhhccccccccCccccchhHH-HHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHH
Confidence 111222355566666655433222 3344555666666666652 221111 11344556666666522 221 111122
Q ss_pred cCCCCccEEEccC-----------CcCCCCCh-hhhcCCCCCCEEeCCCCccccccCCccCC-CCCCCEEEcc----CCc
Q psy16110 493 DELLNLKYLCLAH-----------NHLTEIPE-MMFKNLLNLTYLDLSNNNIVNLRVGSLYG-LPSMKRLDLS----FNK 555 (719)
Q Consensus 493 ~~~~~L~~L~L~~-----------n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~-l~~L~~L~L~----~n~ 555 (719)
..+++|++|++++ +.++.... ..+..+++|++|+++.|.+++..+..+.. +++|++|+++ .|.
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~ 418 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER 418 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence 3455666666662 23332111 11234566666666555555543333333 5566666664 334
Q ss_pred CCcccCCc-CCCCCCCCCCCCcEEECcCCC--CCCcCcCccc-CCCCccEEEcCCCCCCCcC-hhhhcCCCCCCEEECCC
Q psy16110 556 LTTFKGDY-FNTKSKPNTSSLEELNLNNNE--LTYLFPSSFT-IHSKLKTLKLAFNKFNYFP-KELILGLSYLQEIDLSN 630 (719)
Q Consensus 556 l~~~~~~~-~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~ 630 (719)
+++.+.+. +. ..+..+++|++|++++|. +++.....+. .+++|++|++++|++++.. +..+.++++|++|++++
T Consensus 419 l~~~p~~~~~~-~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 419 ITDLPLDNGVR-SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497 (592)
T ss_dssp CSSCCCHHHHH-HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES
T ss_pred ccCchHHHHHH-HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC
Confidence 44322110 00 000123556666665432 3333222222 2555666666555554321 22234555566666666
Q ss_pred CCCccc-CcccCCCCCCCCEEeCCCCcCCCC
Q psy16110 631 NQLKTI-DDYDYGYLPRLRKLNLNNNNIDAI 660 (719)
Q Consensus 631 n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~ 660 (719)
|.+++. .+..+..+++|++|++++|+++..
T Consensus 498 n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 498 CCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 555432 111223455555556655555543
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=7.5e-28 Score=273.65 Aligned_cols=398 Identities=14% Similarity=0.068 Sum_probs=277.0
Q ss_pred cCCCccCEEEccCCCCcccCcccccC-c-ccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCcccccccc
Q psy16110 287 LSQRWLERIILRGNRLTTIEGGAFNG-L-AKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQ 364 (719)
Q Consensus 287 ~~l~~L~~L~Ls~n~i~~~~~~~~~~-l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~ 364 (719)
..+++|++|++++|.+++.....+.. + .+|++|++++|.- +....+.. ....+++|++|++++|.++..+..
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~--~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~--- 182 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG--FTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGK--- 182 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE--EEHHHHHH-HHHHCTTCSEEECTTCEEECCCSH---
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC--cCHHHHHH-HHhhCCCCCEEECccccccCcchh---
Confidence 37899999999999888766666665 3 4499999998862 22111111 234689999999999987543211
Q ss_pred CcccccccccccCCCccEEECCCCCCcCcCC------cchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCC--
Q psy16110 365 GTHITIFSFFQDFQKLKSLDLNGNFLINLES------TGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLK-- 436 (719)
Q Consensus 365 ~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~-- 436 (719)
.++..+..+++|++|++++|.++.+.. ...+++|+.|++++|.+.+++.....+++|+.|+++.....
T Consensus 183 ----~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 258 (592)
T 3ogk_B 183 ----WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIG 258 (592)
T ss_dssp ----HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTT
T ss_pred ----HHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccc
Confidence 133345578999999999999874432 23467899999999999887765556899999999864322
Q ss_pred -CcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCc-hhhcCCCCccEEEccCCcCCC-CCh
Q psy16110 437 -ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQ-YQFDELLNLKYLCLAHNHLTE-IPE 513 (719)
Q Consensus 437 -~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~-~~~ 513 (719)
......+..+++|+.++++++ ....++. .+..+++|++|++++|.++.... ..+..+++|++|+++++ +.. ...
T Consensus 259 ~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~-~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~ 335 (592)
T 3ogk_B 259 MPEKYMNLVFPRKLCRLGLSYM-GPNEMPI-LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLE 335 (592)
T ss_dssp CTTSSSCCCCCTTCCEEEETTC-CTTTGGG-GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHH
T ss_pred hHHHHHHhhccccccccCcccc-chhHHHH-HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHH
Confidence 222345677889999999886 5555554 36678899999999998665333 34678999999999833 332 222
Q ss_pred hhhcCCCCCCEEeCCC-----------CccccccC-CccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECc
Q psy16110 514 MMFKNLLNLTYLDLSN-----------NNIVNLRV-GSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLN 581 (719)
Q Consensus 514 ~~~~~l~~L~~L~Ls~-----------n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls 581 (719)
..+..+++|++|++++ +.+++... .....+++|++|+++.|.+++.....+.. .+++|++|+++
T Consensus 336 ~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~----~~~~L~~L~l~ 411 (592)
T 3ogk_B 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT----YLKNLCDFRLV 411 (592)
T ss_dssp HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH----HCCSCCEEEEE
T ss_pred HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh----hCCCCcEEEEe
Confidence 3346689999999993 56665322 22446899999999888877543322221 25889999996
Q ss_pred ----CCCCCCc-----CcCcccCCCCccEEEcCCCC--CCCcChhhh-cCCCCCCEEECCCCCCcccC-cccCCCCCCCC
Q psy16110 582 ----NNELTYL-----FPSSFTIHSKLKTLKLAFNK--FNYFPKELI-LGLSYLQEIDLSNNQLKTID-DYDYGYLPRLR 648 (719)
Q Consensus 582 ----~n~l~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~ 648 (719)
.|.+++. .+..+..+++|++|++++|. ++......+ ..+++|+.|++++|++++.. +..+.++++|+
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ 491 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCC
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccC
Confidence 5677764 23336678999999997654 554333333 45889999999999988532 33457889999
Q ss_pred EEeCCCCcCCCC-CcccCCCCCCCcEEECCCCcCCCcChHhh-cCcccc-EEecCC
Q psy16110 649 KLNLNNNNIDAI-SETCFFNSSQLQIINLSFNRLEKLPERLF-NTFLYT-NYDMAP 701 (719)
Q Consensus 649 ~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~-~~l~~L-~L~l~~ 701 (719)
+|++++|++++. .+..+..+++|++|+|++|+++......+ ..++.+ ...+..
T Consensus 492 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred eeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 999999998654 23334568999999999999886543333 456777 444443
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2e-24 Score=220.17 Aligned_cols=225 Identities=25% Similarity=0.332 Sum_probs=195.3
Q ss_pred EEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCc
Q psy16110 476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK 555 (719)
Q Consensus 476 ~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 555 (719)
.++..+.++..+|... .++|++|++++|.++.++...|..+++|++|++++|+++++.+..+..+++|++|++++|+
T Consensus 11 ~~~c~~~~l~~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCSSCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCccccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 4666777777777632 3579999999999999888788999999999999999999888889999999999999999
Q ss_pred CCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcC-hhhhcCCCCCCEEECCCCCCc
Q psy16110 556 LTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFP-KELILGLSYLQEIDLSNNQLK 634 (719)
Q Consensus 556 l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~ 634 (719)
++.++...+. .+++|++|++++|.+++..+..+..+++|++|++++|+++.+. +..+.++++|++|++++|+++
T Consensus 88 l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 88 IQSLALGAFS-----GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp CCEECTTTTT-----TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCccChhhhc-----CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 9888766654 4599999999999999988778999999999999999998854 566889999999999999999
Q ss_pred ccCcccCCCCCCCC----EEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeeecc
Q psy16110 635 TIDDYDYGYLPRLR----KLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHL 709 (719)
Q Consensus 635 ~~~~~~l~~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~ 709 (719)
++++..+..+++|+ .|++++|+++++++..+.. .+|++|++++|+++.+|+..|.++++| +|++++|++
T Consensus 163 ~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~----- 236 (276)
T 2z62_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW----- 236 (276)
T ss_dssp EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB-----
T ss_pred cCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcc-----
Confidence 98877777777777 8999999999988876654 589999999999999999999999999 999999999
Q ss_pred CCCccccC
Q psy16110 710 SGHRCECA 717 (719)
Q Consensus 710 ~~~~C~c~ 717 (719)
.|+|.
T Consensus 237 ---~c~c~ 241 (276)
T 2z62_A 237 ---DCSCP 241 (276)
T ss_dssp ---CCCTT
T ss_pred ---cccCC
Confidence 78886
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=4.1e-24 Score=217.06 Aligned_cols=203 Identities=30% Similarity=0.438 Sum_probs=141.0
Q ss_pred CccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEcc
Q psy16110 473 KLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS 552 (719)
Q Consensus 473 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 552 (719)
..+.+++++++++.+|... .+++++|++++|.++.++...|..+++|++|++++|+++.+.+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3455566666555555321 2456666666666666665556666666666666666666655556666666666666
Q ss_pred CCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCC
Q psy16110 553 FNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632 (719)
Q Consensus 553 ~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 632 (719)
+|+++.++...+. .+++|++|++++|.+++..+..|..+++|++|++++|+++.+++..+..+++|++|++++|.
T Consensus 94 ~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 94 DNKLQALPIGVFD-----QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp SSCCCCCCTTTTT-----TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCcCCHhHcc-----cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence 6666665554443 24677777777777777766677777778888888877777777777777888888888888
Q ss_pred CcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCC
Q psy16110 633 LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEK 683 (719)
Q Consensus 633 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 683 (719)
++++++..|.++++|++|++++|+++++++..|..+++|+.|++++|++.+
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 887777677778888888888888887777777777888888888887764
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=9.1e-27 Score=241.94 Aligned_cols=246 Identities=20% Similarity=0.202 Sum_probs=169.4
Q ss_pred cCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCC-chhhc-------CCCCccEEEccCCcCCC-CChh
Q psy16110 444 TNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP-QYQFD-------ELLNLKYLCLAHNHLTE-IPEM 514 (719)
Q Consensus 444 ~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~-------~~~~L~~L~L~~n~l~~-~~~~ 514 (719)
...++|+.|++++| .+ .+|..... .|+.|++++|.+.... +..+. ++++|++|++++|.+++ ++..
T Consensus 40 ~~~~~L~~l~l~~n-~l-~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVD-TE-ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCC-TT-CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccc-cc-ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34445555666665 33 44432221 2566666666654321 11121 46777777777777764 3333
Q ss_pred hh-cCCCCCCEEeCCCCccccccCCccCCC-----CCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCc
Q psy16110 515 MF-KNLLNLTYLDLSNNNIVNLRVGSLYGL-----PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYL 588 (719)
Q Consensus 515 ~~-~~l~~L~~L~Ls~n~i~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 588 (719)
.| ..+++|++|++++|++++. |..+..+ ++|++|++++|+++.+++..+. .+++|++|++++|++.+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-----VFPALSTLDLSDNPELGE 188 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-----CCSSCCEEECCSCTTCHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-----cCCCCCEEECCCCCcCcc
Confidence 22 6677777777777777776 5555555 7788888888887776655554 347888888888877654
Q ss_pred --CcCc--ccCCCCccEEEcCCCCCCC---cChhhhcCCCCCCEEECCCCCCcccCc-ccCCCCCCCCEEeCCCCcCCCC
Q psy16110 589 --FPSS--FTIHSKLKTLKLAFNKFNY---FPKELILGLSYLQEIDLSNNQLKTIDD-YDYGYLPRLRKLNLNNNNIDAI 660 (719)
Q Consensus 589 --~~~~--~~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~ 660 (719)
.+.. +..+++|++|++++|+++. ++...+.++++|++|++++|++++..+ ..+..+++|++|++++|+++.+
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i 268 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC
T ss_pred hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh
Confidence 1222 3778888888888888884 444555678899999999999988653 4566788999999999999877
Q ss_pred CcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCcee
Q psy16110 661 SETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVF 705 (719)
Q Consensus 661 ~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~ 705 (719)
+.. +. ++|++||+++|+++.+|. |..+++| +|++++|++.
T Consensus 269 p~~-~~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 269 PKG-LP--AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CSS-CC--SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTT
T ss_pred hhh-cc--CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCC
Confidence 654 33 789999999999998865 7889999 9999999884
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.4e-25 Score=244.10 Aligned_cols=235 Identities=23% Similarity=0.251 Sum_probs=172.0
Q ss_pred CCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEE
Q psy16110 446 VPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYL 525 (719)
Q Consensus 446 l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 525 (719)
+++|+.|++++| .++.+++..|..+++|++|++++|.++++++ +..+++|++|++++|.+++++. .++|++|
T Consensus 33 ~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp GGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred CCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 347888888888 6777776667778888888888888776654 6777888888888887776653 2778888
Q ss_pred eCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCccc-CCCCccEEEc
Q psy16110 526 DLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFT-IHSKLKTLKL 604 (719)
Q Consensus 526 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L 604 (719)
++++|.++++.+. .+++|++|++++|.++++++..+. .+++|++|++++|.+++..|..+. .+++|++|+|
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-----CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-----GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-----CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 8888888776554 346788888888887776555443 247788888888888877666665 6788888888
Q ss_pred CCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCC-C
Q psy16110 605 AFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE-K 683 (719)
Q Consensus 605 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 683 (719)
++|.++++++ ...+++|+.|++++|.++++++. +..+++|+.|++++|+++++++. +..+++|+.|++++|++. .
T Consensus 177 s~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 177 QYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp TTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBCHH
T ss_pred CCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCcCc
Confidence 8888877754 34577888888888888877763 77778888888888888876553 667778888888888777 3
Q ss_pred cChHhhcCcccc-EEecC
Q psy16110 684 LPERLFNTFLYT-NYDMA 700 (719)
Q Consensus 684 i~~~~~~~l~~L-~L~l~ 700 (719)
..+.++..++.| .++++
T Consensus 253 ~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 253 TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHhCCCCcEEecc
Confidence 334456777777 77775
No 72
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.2e-24 Score=227.26 Aligned_cols=206 Identities=21% Similarity=0.219 Sum_probs=104.7
Q ss_pred CCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCcc---------C
Q psy16110 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSL---------Y 541 (719)
Q Consensus 471 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l---------~ 541 (719)
+++|++|++++|.++.++. .++.+++|++|++++|.++.++. .+..+++|++|++++|++.+..|..+ .
T Consensus 103 l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180 (328)
T ss_dssp GTTCSEEEEESSCCCCCCS-CGGGGTTCSEEEEESCCCCCCCG-GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred CCCCCEEECCCCCccchhH-HHhccCCCCEEECCCCccccCcH-HHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence 4444444444444443332 34445555555555555554443 24455555555555554444434333 2
Q ss_pred CCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCC
Q psy16110 542 GLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLS 621 (719)
Q Consensus 542 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 621 (719)
++++|++|++++|+++.++.. +. .+++|++|++++|.++++ |..+..+++|++|++++|.+.+..+..+..++
T Consensus 181 ~l~~L~~L~L~~n~l~~lp~~-l~-----~l~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 253 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIRSLPAS-IA-----NLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253 (328)
T ss_dssp ESTTCCEEEEEEECCCCCCGG-GG-----GCTTCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC
T ss_pred cCCCCCEEECcCCCcCcchHh-hc-----CCCCCCEEEccCCCCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCC
Confidence 355555555555555544322 11 235555555555555543 33455555555555555555544444455555
Q ss_pred CCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcC
Q psy16110 622 YLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLP 685 (719)
Q Consensus 622 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 685 (719)
+|++|++++|++.+..+..+.++++|++|++++|++.+..|..+.++++|+.+++..+.+..++
T Consensus 254 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence 5666666555555544445555556666666665555555555555566666655555444433
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=7.9e-26 Score=249.13 Aligned_cols=237 Identities=24% Similarity=0.273 Sum_probs=143.3
Q ss_pred CCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEE
Q psy16110 422 YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYL 501 (719)
Q Consensus 422 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L 501 (719)
+++|+.|++++|.+.++++..|..+++|++|++++| .+...++ |..+++|++|++++|.+++++. .++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 346666666666666666666666666666666666 4443333 5566666666666666665543 2566666
Q ss_pred EccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECc
Q psy16110 502 CLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLN 581 (719)
Q Consensus 502 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls 581 (719)
++++|.++.++.. .+++|++|++++|.+++..+..+..+++|++|+|++|.+++..+..+.. .+++|++|+|+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~----~l~~L~~L~Ls 177 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA----SSDTLEHLNLQ 177 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG----GTTTCCEEECT
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh----hCCcccEEecC
Confidence 6666666665542 3456666666666666666666666666666666666666544433321 23666666666
Q ss_pred CCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCC-CC
Q psy16110 582 NNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID-AI 660 (719)
Q Consensus 582 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~ 660 (719)
+|.+++..+ +..+++|++|+|++|.++++++. +..+++|+.|++++|.+++++. .+..+++|+.|++++|++. +.
T Consensus 178 ~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 178 YNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp TSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCBCHHH
T ss_pred CCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccch-hhccCCCCCEEEcCCCCCcCcc
Confidence 666666522 23466666666666666666655 5566666666666666666554 3566666666666666666 23
Q ss_pred CcccCCCCCCCcEEECC
Q psy16110 661 SETCFFNSSQLQIINLS 677 (719)
Q Consensus 661 ~~~~~~~l~~L~~L~Ls 677 (719)
.+..+..++.|+.++++
T Consensus 254 ~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 254 LRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred hHHHHHhCCCCcEEecc
Confidence 33445555566555554
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=1.5e-24 Score=215.99 Aligned_cols=196 Identities=20% Similarity=0.341 Sum_probs=162.0
Q ss_pred cccEEEcCCCCccccCcccccchhccccEEEcCCCc-CCCcCCCCCCcccccCCCCCCEEECcC-CCCcccCcCccCCCc
Q psy16110 165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNL-FGDSLNPIFSTSEFHGLVNLRILDLSD-NQIKAIEEGILKGCD 242 (719)
Q Consensus 165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~ 242 (719)
++++|++++|+++.++...|. .+++|++|++++|. ++. +.+.+|.++++|++|++++ |+++.+++..|.+++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~-~l~~L~~L~l~~n~~l~~-----i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFS-NLPNISRIYVSIDVTLQQ-----LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTT-TCTTCCEEEEECCSSCCE-----ECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred cccEEEEeCCcceEECHHHcc-CCCCCcEEeCCCCCCcce-----eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 599999999999999998885 67899999999997 765 3445788999999999998 999999888889999
Q ss_pred cCcEEECCCCcCCcCCCCCCCCCCCCc---EEEcCCC-cCcccCCCcccCCCccC-EEEccCCCCcccCcccccCcccCc
Q psy16110 243 NLLELRMDHNRFTSIPSVSLNGPRALR---ILSMAYN-RIGTLKADSFLSQRWLE-RIILRGNRLTTIEGGAFNGLAKIH 317 (719)
Q Consensus 243 ~L~~L~L~~n~l~~i~~~~l~~l~~L~---~L~Ls~n-~i~~~~~~~~~~l~~L~-~L~Ls~n~i~~~~~~~~~~l~~L~ 317 (719)
+|++|++++|.++.+|. +..+++|+ +|++++| .++.+++..|..+++|+ +|++++|.++.+++.+|.. ++|+
T Consensus 106 ~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~ 182 (239)
T 2xwt_C 106 LLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLD 182 (239)
T ss_dssp TCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEE
T ss_pred CCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCC
Confidence 99999999999998885 77888888 9999999 88888888888888898 9999999888887777766 7888
Q ss_pred EEEcCCCC-CCCcCCCccccccccCC-CCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCC
Q psy16110 318 ILNLGYNR-LNKLNSDTFQGGAFNGL-AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN 388 (719)
Q Consensus 318 ~L~L~~n~-l~~~~~~~~~~~~l~~l-~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n 388 (719)
+|++++|+ ++.++.. .|..+ ++|+.|++++|+++.++.. .+++|+.|+++++
T Consensus 183 ~L~L~~n~~l~~i~~~-----~~~~l~~~L~~L~l~~N~l~~l~~~--------------~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 183 AVYLNKNKYLTVIDKD-----AFGGVYSGPSLLDVSQTSVTALPSK--------------GLEHLKELIARNT 236 (239)
T ss_dssp EEECTTCTTCCEECTT-----TTTTCSBCCSEEECTTCCCCCCCCT--------------TCTTCSEEECTTC
T ss_pred EEEcCCCCCcccCCHH-----HhhccccCCcEEECCCCccccCChh--------------HhccCceeeccCc
Confidence 88888884 8877765 35566 7888888888888766533 2556777777765
No 75
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=2.9e-24 Score=224.41 Aligned_cols=230 Identities=20% Similarity=0.203 Sum_probs=195.8
Q ss_pred CCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEE
Q psy16110 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLD 550 (719)
Q Consensus 471 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 550 (719)
.+.++.|++++|.++.++.. +..+++|++|++++|.++.++. .+..+++|++|++++|+++.+ |..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLRAL-PASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCCCCS-CGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccchhH-HHhccCCCCEEECCCCccccC-cHHHhcCcCCCEEE
Confidence 36788888888888888764 5669999999999999998875 478899999999999999954 77899999999999
Q ss_pred ccCCcCCcccCCcCCC----CCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEE
Q psy16110 551 LSFNKLTTFKGDYFNT----KSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEI 626 (719)
Q Consensus 551 L~~n~l~~~~~~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 626 (719)
+++|++.+..+..+.. ..+..+++|++|++++|.++. +|..+..+++|++|++++|+++++++. +..+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEE
Confidence 9997655433332211 112236999999999999995 477899999999999999999999875 8899999999
Q ss_pred ECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCC-CcChHhhcCcccc-EEecCCCce
Q psy16110 627 DLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE-KLPERLFNTFLYT-NYDMAPNLV 704 (719)
Q Consensus 627 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L-~L~l~~N~l 704 (719)
++++|++.+..+..+.++++|++|++++|++.+..|..+..+++|++|+|++|++. .+|. .|.+++.| .+++..|.+
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG-GGGGSCTTCEEECCGGGS
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH-HHhhccCceEEeCCHHHH
Confidence 99999999888888999999999999999999988888999999999999999766 5554 67899999 999998877
Q ss_pred ee
Q psy16110 705 FQ 706 (719)
Q Consensus 705 ~~ 706 (719)
..
T Consensus 314 ~~ 315 (328)
T 4fcg_A 314 AQ 315 (328)
T ss_dssp CC
T ss_pred HH
Confidence 44
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=8.3e-26 Score=234.69 Aligned_cols=206 Identities=20% Similarity=0.177 Sum_probs=100.4
Q ss_pred CCcCcEEeCcCCCCCCCCCCCCC-CCCCCccEEEcCCCCCCCCCchhhcCC-----CCccEEEccCCcCCCCChhhhcCC
Q psy16110 446 VPTLLHLNLSRNAHLSSLPVGGF-DPLKKLEVLDLAATGLKSIPQYQFDEL-----LNLKYLCLAHNHLTEIPEMMFKNL 519 (719)
Q Consensus 446 l~~L~~L~L~~n~~l~~l~~~~~-~~l~~L~~L~ls~n~l~~~~~~~~~~~-----~~L~~L~L~~n~l~~~~~~~~~~l 519 (719)
+++|++|++++|...+.+|...| ..+++|++|++++|++++++ ..+..+ ++|++|++++|+++.+++..|..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 44555555555522223333322 44455555555555555442 233333 455555555555555554445555
Q ss_pred CCCCEEeCCCCccccc--cCC--ccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccC
Q psy16110 520 LNLTYLDLSNNNIVNL--RVG--SLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTI 595 (719)
Q Consensus 520 ~~L~~L~Ls~n~i~~~--~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 595 (719)
++|++|++++|++.+. .+. .+..+++|++|++++|+++.++ ......+..
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------------------~~~~~~~~~ 226 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS--------------------------GVCSALAAA 226 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH--------------------------HHHHHHHHT
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH--------------------------HHHHHHHhc
Confidence 5555555555554332 111 1234444444444444444221 111122234
Q ss_pred CCCccEEEcCCCCCCCcC-hhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEE
Q psy16110 596 HSKLKTLKLAFNKFNYFP-KELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQII 674 (719)
Q Consensus 596 l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 674 (719)
+++|++|++++|++++.+ ...+..+++|++|++++|+++.++.. +. ++|++|++++|++++++. +..+++|++|
T Consensus 227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~-~~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L 301 (312)
T 1wwl_A 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG-LP--AKLSVLDLSYNRLDRNPS--PDELPQVGNL 301 (312)
T ss_dssp TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSS-CC--SEEEEEECCSSCCCSCCC--TTTSCEEEEE
T ss_pred CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhh-cc--CCceEEECCCCCCCCChh--HhhCCCCCEE
Confidence 455555555555555433 12334455666666666666655442 22 566666666666666632 5566666666
Q ss_pred ECCCCcCCC
Q psy16110 675 NLSFNRLEK 683 (719)
Q Consensus 675 ~Ls~N~l~~ 683 (719)
++++|+++.
T Consensus 302 ~L~~N~l~~ 310 (312)
T 1wwl_A 302 SLKGNPFLD 310 (312)
T ss_dssp ECTTCTTTC
T ss_pred eccCCCCCC
Confidence 666666654
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=5.7e-23 Score=210.50 Aligned_cols=204 Identities=24% Similarity=0.246 Sum_probs=151.0
Q ss_pred CCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCC
Q psy16110 468 FDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK 547 (719)
Q Consensus 468 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 547 (719)
+..+++++++++++++++.++... .++++.|++++|.++.++...|..+++|++|++++|.++++.+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 344556666666666666666432 24667777777777766666677777777777777777766443 5677788
Q ss_pred EEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEE
Q psy16110 548 RLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEID 627 (719)
Q Consensus 548 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 627 (719)
+|++++|+++.++... ..+++|++|++++|+++++.+..|..+++|++|++++|+++.+++..|..+++|+.|+
T Consensus 81 ~L~Ls~N~l~~l~~~~------~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLG------QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp EEECCSSCCSSCCCCT------TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEECCCCcCCcCchhh------ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 8888888777665322 2357888888888888888777788888888888888888888887778888888888
Q ss_pred CCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCC
Q psy16110 628 LSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEK 683 (719)
Q Consensus 628 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 683 (719)
+++|+++++++..|.++++|++|++++|+++.++.. +...++|+.|+|++|++.+
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~-~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCBCC
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh-hcccccCCeEEeCCCCccC
Confidence 888888888877778888888888888888877665 4456788888888888764
No 78
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.1e-27 Score=272.28 Aligned_cols=33 Identities=6% Similarity=0.109 Sum_probs=20.4
Q ss_pred ccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCC
Q psy16110 191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQ 229 (719)
Q Consensus 191 L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 229 (719)
-+.++++.+... .....+..+++|++|+++++.
T Consensus 45 ~~~l~~~~~~~~------~~~~~~~~~~~L~~L~L~~~~ 77 (594)
T 2p1m_B 45 RRKVFIGNCYAV------SPATVIRRFPKVRSVELKGKP 77 (594)
T ss_dssp CCEEEESSTTSS------CHHHHHHHCTTCCEEEEECSC
T ss_pred ceEEeecccccc------CHHHHHhhCCCceEEeccCCC
Confidence 346666654322 112346677888888888875
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.90 E-value=2.5e-23 Score=219.56 Aligned_cols=247 Identities=21% Similarity=0.269 Sum_probs=186.6
Q ss_pred CCc-ccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCcc
Q psy16110 104 FPY-PCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDK 182 (719)
Q Consensus 104 ~~~-~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~ 182 (719)
||. .|+|.. ..|+|.+..++ +||. .++ .++++|+|++|+|+.||..
T Consensus 2 Cp~~~C~C~~-----~~v~C~~~~Lt-----~iP~-------------------~l~----~~l~~L~Ls~N~i~~i~~~ 48 (350)
T 4ay9_X 2 CHHRICHCSN-----RVFLCQESKVT-----EIPS-------------------DLP----RNAIELRFVLTKLRVIQKG 48 (350)
T ss_dssp CCCSSSEEET-----TEEEEESTTCC-----SCCT-------------------TCC----TTCSEEEEESCCCSEECTT
T ss_pred CCCCccEeeC-----CEEEecCCCCC-----ccCc-------------------CcC----CCCCEEEccCCcCCCcCHH
Confidence 454 499973 57899876665 3443 332 2599999999999999999
Q ss_pred cccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCE-EECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCC
Q psy16110 183 LFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRI-LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS 261 (719)
Q Consensus 183 ~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~ 261 (719)
+|. .+++|++|+|++|.+.+.++ ..+|.++++++. +.+++|+++.+++++|.++++|++|++++|+++.+++..
T Consensus 49 ~f~-~l~~L~~L~Ls~N~i~~~i~----~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~ 123 (350)
T 4ay9_X 49 AFS-GFGDLEKIEISQNDVLEVIE----ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH 123 (350)
T ss_dssp SST-TCTTCCEEEEECCTTCCEEC----TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCT
T ss_pred HHc-CCCCCCEEECcCCCCCCccC----hhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchh
Confidence 996 67899999999999876544 367889988875 667778999999989999999999999999999998877
Q ss_pred CCCCCCCcEEEcCC-CcCcccCCCcccCCC-ccCEEEccCCCCcccCcccccCcccCcEEEcC-CCCCCCcCCCcccccc
Q psy16110 262 LNGPRALRILSMAY-NRIGTLKADSFLSQR-WLERIILRGNRLTTIEGGAFNGLAKIHILNLG-YNRLNKLNSDTFQGGA 338 (719)
Q Consensus 262 l~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~~ 338 (719)
+....++..|++.+ +.+..+.+..|..+. .++.|++++|+++.+.+.+|. ..+|++|++. +|.++.++.+ +
T Consensus 124 ~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~-----~ 197 (350)
T 4ay9_X 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPND-----V 197 (350)
T ss_dssp TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTT-----T
T ss_pred hcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHH-----H
Confidence 77788888888865 678888877777764 588899999999988877665 4578888886 5778888776 4
Q ss_pred ccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCC-CCcCcCCcchhccCCEEEcc
Q psy16110 339 FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN-FLINLESTGLEDTLDNLNVR 408 (719)
Q Consensus 339 l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n-~l~~~~~~~~~~~L~~L~l~ 408 (719)
|..+++|++|++++|+++.++...| .+|+.|.+.++ .+..+|....+++|+.+++.
T Consensus 198 f~~l~~L~~LdLs~N~l~~lp~~~~--------------~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 198 FHGASGPVILDISRTRIHSLPSYGL--------------ENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp TTTEECCSEEECTTSCCCCCCSSSC--------------TTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred hccCcccchhhcCCCCcCccChhhh--------------ccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 5667888888888888887765433 34555655443 44555544444455555544
No 80
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=5.7e-27 Score=266.50 Aligned_cols=178 Identities=11% Similarity=0.098 Sum_probs=95.0
Q ss_pred CEEECcCCCCcccCcCccCCCccCcEEECCCCcC-CcC---CCC-----------CCCCCCCCcEEEcCCCcCcccCCCc
Q psy16110 221 RILDLSDNQIKAIEEGILKGCDNLLELRMDHNRF-TSI---PSV-----------SLNGPRALRILSMAYNRIGTLKADS 285 (719)
Q Consensus 221 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~i---~~~-----------~l~~l~~L~~L~Ls~n~i~~~~~~~ 285 (719)
+.++++++... .+...+..+++|++|+++++.. ..+ |.. ....+++|++|++++|.++......
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 45666554322 2333466788899999988752 222 111 0124567777777777766554444
Q ss_pred cc-CCCccCEEEccCC-CCcccC-cccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCcccccc
Q psy16110 286 FL-SQRWLERIILRGN-RLTTIE-GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDT 362 (719)
Q Consensus 286 ~~-~l~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~ 362 (719)
+. .+++|++|++++| .++... +..+.++++|++|++++|.+++.....+.. ....+++|++|++++|. ..++..
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~-~~~~~~~L~~L~l~~~~-~~~~~~- 201 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH-FPDTYTSLVSLNISCLA-SEVSFS- 201 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG-SCTTCCCCCEEECTTCC-SCCCHH-
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH-HhhcCCcCcEEEecccC-CcCCHH-
Confidence 43 5677777777777 343321 222345677777777777766544433322 22355677777777665 222211
Q ss_pred ccCcccccccccccCCCccEEECCCC-CCcCcCC-cchhccCCEEEcc
Q psy16110 363 FQGTHITIFSFFQDFQKLKSLDLNGN-FLINLES-TGLEDTLDNLNVR 408 (719)
Q Consensus 363 f~~~~~~~~~~l~~~~~L~~L~L~~n-~l~~~~~-~~~~~~L~~L~l~ 408 (719)
.+......+++|++|++++| .+..++. ...+++|++|+++
T Consensus 202 ------~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 202 ------ALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp ------HHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred ------HHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 11222234566777777666 2222222 2233455555543
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=2.6e-23 Score=207.10 Aligned_cols=196 Identities=23% Similarity=0.320 Sum_probs=115.6
Q ss_pred CccEEEcCCCCCCCCCchhhcCCCCccEEEccCCc-CCCCChhhhcCCCCCCEEeCCC-CccccccCCccCCCCCCCEEE
Q psy16110 473 KLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNH-LTEIPEMMFKNLLNLTYLDLSN-NNIVNLRVGSLYGLPSMKRLD 550 (719)
Q Consensus 473 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~ 550 (719)
++++|++++|+++.++...|.++++|++|++++|. ++.++...|..+++|++|++++ |+++.+.+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666666666566666666666666664 6666665566666666666666 666666555666666666666
Q ss_pred ccCCcCCcccCCcCCCCCCCCCCCCc---EEECcCC-CCCCcCcCcccCCCCcc-EEEcCCCCCCCcChhhhcCCCCCCE
Q psy16110 551 LSFNKLTTFKGDYFNTKSKPNTSSLE---ELNLNNN-ELTYLFPSSFTIHSKLK-TLKLAFNKFNYFPKELILGLSYLQE 625 (719)
Q Consensus 551 L~~n~l~~~~~~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~ 625 (719)
+++|++++++. +. .+++|+ +|++++| .++++.+..|..+++|+ +|++++|+++.++...+.. ++|+.
T Consensus 112 l~~n~l~~lp~--~~-----~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~ 183 (239)
T 2xwt_C 112 IFNTGLKMFPD--LT-----KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDA 183 (239)
T ss_dssp EEEECCCSCCC--CT-----TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEE
T ss_pred CCCCCCccccc--cc-----cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCE
Confidence 66666655443 21 224444 6666666 56655555556666666 6666666666555554444 55666
Q ss_pred EECCCCC-CcccCcccCCCC-CCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCC
Q psy16110 626 IDLSNNQ-LKTIDDYDYGYL-PRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679 (719)
Q Consensus 626 L~Ls~n~-l~~~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 679 (719)
|++++|+ ++++++..|.++ ++|++|++++|+++++++. .+++|+.|+++++
T Consensus 184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred EEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 6666663 555555555555 5666666666666555543 2445555555544
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.6e-23 Score=212.83 Aligned_cols=206 Identities=27% Similarity=0.359 Sum_probs=102.2
Q ss_pred cCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCC
Q psy16110 444 TNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523 (719)
Q Consensus 444 ~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 523 (719)
..+++|+.|++++| .++.++. +..+++|++|++++|.+++++ .+..+++|++|++++|.++.++...|..+++|+
T Consensus 38 ~~l~~L~~L~l~~~-~i~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNS-DIKSVQG--IQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTS-CCCCCTT--GGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCC-Ccccccc--cccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34445555555555 3443332 344455555555555554432 344555555555555555555554455555555
Q ss_pred EEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEE
Q psy16110 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603 (719)
Q Consensus 524 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 603 (719)
+|++++|+++++.+..+..+++|++|++++|++++++...+. .+++|++|++++|.+++..+..+..+++|++|+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD-----KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhc-----cCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 555555555555444455555555555555555544433332 234555555555555554444445555555555
Q ss_pred cCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCC
Q psy16110 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFF 666 (719)
Q Consensus 604 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 666 (719)
+++|+++++++..+..+++|+.|++++|.+. +.++.|+.++++.|.+++..|..++
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCccc
Confidence 5555555555444455555555555555443 1233444555555555544443333
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=2.5e-22 Score=201.44 Aligned_cols=181 Identities=26% Similarity=0.376 Sum_probs=159.6
Q ss_pred CCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCC
Q psy16110 496 LNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSL 575 (719)
Q Consensus 496 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L 575 (719)
...++++++++.++.+|... .+++++|++++|+++++.+..|.++++|++|++++|.++++++..+. .+++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L 85 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD-----DLTEL 85 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-----TCTTC
T ss_pred CCCeEEecCCCCccccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc-----cCCcC
Confidence 45788999999999988743 36899999999999998888899999999999999999887766654 35899
Q ss_pred cEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCC
Q psy16110 576 EELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655 (719)
Q Consensus 576 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N 655 (719)
++|++++|.+++..+..|..+++|++|++++|+++.+++..+..+++|++|++++|+++++++..|.++++|++|+|++|
T Consensus 86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence 99999999999988888899999999999999999999888888999999999999999988878889999999999999
Q ss_pred cCCCCCcccCCCCCCCcEEECCCCcCCCc
Q psy16110 656 NIDAISETCFFNSSQLQIINLSFNRLEKL 684 (719)
Q Consensus 656 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i 684 (719)
+++++++..|..+++|++|++++|++++-
T Consensus 166 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 166 QLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999888888899999999999998864
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.4e-22 Score=205.92 Aligned_cols=212 Identities=26% Similarity=0.391 Sum_probs=161.8
Q ss_pred CCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCC
Q psy16110 468 FDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK 547 (719)
Q Consensus 468 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 547 (719)
...+++|+.|++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++++.+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 345678888888888887765 3677888888888888887764 467788888888888888887777788888888
Q ss_pred EEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEE
Q psy16110 548 RLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEID 627 (719)
Q Consensus 548 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 627 (719)
+|++++|+++.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|+++++++..+..+++|++|+
T Consensus 113 ~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFD-----KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp EEECTTSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEECCCCcCCccCHHHhc-----cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 888888888877665554 347888888888888887777778888888888888888888877777888888888
Q ss_pred CCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc
Q psy16110 628 LSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT 695 (719)
Q Consensus 628 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 695 (719)
+++|+++++++..+..+++|++|++++|++.+. +++|+.++++.|.++...+..+..+...
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 888888888777778888888888888876643 4577888888887773333334444433
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.9e-22 Score=208.76 Aligned_cols=210 Identities=22% Similarity=0.328 Sum_probs=140.4
Q ss_pred EccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcC
Q psy16110 429 DLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHL 508 (719)
Q Consensus 429 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l 508 (719)
.+..+.+.++. .+..+++|++|++++| .+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.+
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~-~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL 97 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCC-CccCchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC
Confidence 34444444432 2345677888888887 6666653 6677778888888877777765 67777777777777777
Q ss_pred CCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCc
Q psy16110 509 TEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYL 588 (719)
Q Consensus 509 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 588 (719)
+.++ .+..+++|++|++++|+++++. .+..+++|++|++++|++++++. + ..+++|++|++++|.+++.
T Consensus 98 ~~~~--~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l-----~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 98 KNVS--AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--L-----AGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp SCCG--GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--G-----GGCTTCCEEECCSSCCCCC
T ss_pred CCch--hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--c-----cCCCCccEEEccCCcCCCC
Confidence 7764 3667777777777777777653 26677777777777777766543 2 2346677777777777665
Q ss_pred CcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCc
Q psy16110 589 FPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE 662 (719)
Q Consensus 589 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 662 (719)
.+ +..+++|++|++++|+++++++ +..+++|++|++++|+++++++ +..+++|+.|++++|++++.+.
T Consensus 167 ~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 167 TP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp GG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred hh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence 33 6666777777777777766654 5666677777777777666653 5666677777777776665543
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.6e-21 Score=195.54 Aligned_cols=181 Identities=27% Similarity=0.398 Sum_probs=160.3
Q ss_pred CCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEc
Q psy16110 472 KKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDL 551 (719)
Q Consensus 472 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 551 (719)
...++++++++.++.++... .++++.|++++|.++.++...|..+++|++|++++|+++++.+..|..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45778999999999888643 268999999999999998888899999999999999999988888999999999999
Q ss_pred cCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCC
Q psy16110 552 SFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN 631 (719)
Q Consensus 552 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 631 (719)
++|+++.++...+.. +++|++|++++|.++++.+..|..+++|++|++++|+++.+++..+..+++|++|++++|
T Consensus 91 ~~n~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 91 ANNQLASLPLGVFDH-----LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp TTSCCCCCCTTTTTT-----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcccccChhHhcc-----cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence 999999887766643 589999999999999988888899999999999999999999888899999999999999
Q ss_pred CCcccCcccCCCCCCCCEEeCCCCcCCCC
Q psy16110 632 QLKTIDDYDYGYLPRLRKLNLNNNNIDAI 660 (719)
Q Consensus 632 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 660 (719)
+++++++..+..+++|++|++++|++++.
T Consensus 166 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 166 QLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999888889999999999999999876
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=5.6e-22 Score=205.12 Aligned_cols=201 Identities=28% Similarity=0.399 Sum_probs=175.7
Q ss_pred CCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCC
Q psy16110 468 FDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK 547 (719)
Q Consensus 468 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 547 (719)
+..+++|+.|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|++++.. .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCC
Confidence 355789999999999999886 47889999999999999998887 888999999999999998863 688999999
Q ss_pred EEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEE
Q psy16110 548 RLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEID 627 (719)
Q Consensus 548 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 627 (719)
+|++++|++++++. + ..+++|++|++++|.+++..+ +..+++|++|++++|+++.+++ +..+++|++|+
T Consensus 111 ~L~l~~n~l~~~~~--l-----~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~ 179 (308)
T 1h6u_A 111 TLDLTSTQITDVTP--L-----AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179 (308)
T ss_dssp EEECTTSCCCCCGG--G-----TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred EEECCCCCCCCchh--h-----cCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEE
Confidence 99999999987653 2 346999999999999998754 8899999999999999998876 78999999999
Q ss_pred CCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhh
Q psy16110 628 LSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689 (719)
Q Consensus 628 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 689 (719)
+++|.++++++ +..+++|++|++++|+++++++ +..+++|+.|++++|+++..|....
T Consensus 180 l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~~~~ 237 (308)
T 1h6u_A 180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYN 237 (308)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCEECC
T ss_pred CCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCeeec
Confidence 99999998876 7889999999999999998874 7889999999999999988776443
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=2.5e-22 Score=211.98 Aligned_cols=240 Identities=23% Similarity=0.298 Sum_probs=158.9
Q ss_pred CEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccE-EEcCC
Q psy16110 403 DNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEV-LDLAA 481 (719)
Q Consensus 403 ~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~-L~ls~ 481 (719)
+.++.++++++.+|..+ .+++++|+|++|+|+.+++.+|.++++|++|+|++|...+.++..+|.+++++++ +.++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 34455555555555433 3467777777777777776677777777777777774445666666777776654 45556
Q ss_pred CCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCC-CccccccCCccCCCC-CCCEEEccCCcCCcc
Q psy16110 482 TGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN-NNIVNLRVGSLYGLP-SMKRLDLSFNKLTTF 559 (719)
Q Consensus 482 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~-~L~~L~L~~n~l~~~ 559 (719)
|+++.+++..|..+++|++|++++|+++.++...+....++..+++.+ +++..+.+..|..+. .++.|++++|+++.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 777777777777777777777777777777766666666677777754 566666666666654 577777777777777
Q ss_pred cCCcCCCCCCCCCCCCcEEECcC-CCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCC-CCcccC
Q psy16110 560 KGDYFNTKSKPNTSSLEELNLNN-NELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN-QLKTID 637 (719)
Q Consensus 560 ~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~ 637 (719)
+...|.. .+|++|++++ |.++.+.+.+|..+++|++|++++|+++.+|+..+ .+|+.|.+.++ .+..++
T Consensus 170 ~~~~f~~------~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 170 HNSAFNG------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp CTTSSTT------EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC
T ss_pred Chhhccc------cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC
Confidence 6666542 5677777764 56666666677777778888888877777776544 44555554443 344554
Q ss_pred cccCCCCCCCCEEeCCCC
Q psy16110 638 DYDYGYLPRLRKLNLNNN 655 (719)
Q Consensus 638 ~~~l~~l~~L~~L~Ls~N 655 (719)
+ +.++++|+.++++++
T Consensus 241 ~--l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 241 T--LEKLVALMEASLTYP 256 (350)
T ss_dssp C--TTTCCSCCEEECSCH
T ss_pred C--chhCcChhhCcCCCC
Confidence 3 677777777777654
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.4e-23 Score=222.81 Aligned_cols=254 Identities=17% Similarity=0.170 Sum_probs=139.9
Q ss_pred EEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCC----CCCCCCC-CccEEEcCCCCCCCCCchhhcCC-----CC
Q psy16110 428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPV----GGFDPLK-KLEVLDLAATGLKSIPQYQFDEL-----LN 497 (719)
Q Consensus 428 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~----~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~~-----~~ 497 (719)
++++.|.+++..+..+...++|++|++++| .++..+. ..|..++ +|++|++++|.++......+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 344555555544444444444555555555 4444443 3344444 56666666666555544444432 66
Q ss_pred ccEEEccCCcCCCCChhh----hcCC-CCCCEEeCCCCccccccCCc----cCC-CCCCCEEEccCCcCCcccCCcCCCC
Q psy16110 498 LKYLCLAHNHLTEIPEMM----FKNL-LNLTYLDLSNNNIVNLRVGS----LYG-LPSMKRLDLSFNKLTTFKGDYFNTK 567 (719)
Q Consensus 498 L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~Ls~n~i~~~~~~~----l~~-l~~L~~L~L~~n~l~~~~~~~~~~~ 567 (719)
|++|++++|.++...... +..+ ++|++|++++|++++..+.. +.. .++|++|+|++|.+++.....+...
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 666666666666555432 3333 56666666666666544332 223 2466666666666654322211000
Q ss_pred CCCCC-CCCcEEECcCCCCCCcCcCc----ccCC-CCccEEEcCCCCCCCcChh----hhcC-CCCCCEEECCCCCCccc
Q psy16110 568 SKPNT-SSLEELNLNNNELTYLFPSS----FTIH-SKLKTLKLAFNKFNYFPKE----LILG-LSYLQEIDLSNNQLKTI 636 (719)
Q Consensus 568 ~~~~l-~~L~~L~Ls~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~----~l~~-l~~L~~L~Ls~n~l~~~ 636 (719)
+..+ ++|++|++++|++++..+.. +..+ ++|++|+|++|.++..... .+.. .++|++|++++|.+++.
T Consensus 162 -l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 162 -LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp -HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred -HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 0011 36777777777776654433 3334 4777777777777763222 2222 45777777777777654
Q ss_pred Cc----ccCCCCCCCCEEeCCCCcCCCCCcc-------cCCCCCCCcEEECCCCcCCC
Q psy16110 637 DD----YDYGYLPRLRKLNLNNNNIDAISET-------CFFNSSQLQIINLSFNRLEK 683 (719)
Q Consensus 637 ~~----~~l~~l~~L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~Ls~N~l~~ 683 (719)
+. ..+..+++|++|++++|++.++.+. .+..+++|+.||+++|++..
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 43 2346667777777777775555432 45666777777777777764
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.8e-22 Score=209.36 Aligned_cols=202 Identities=20% Similarity=0.186 Sum_probs=140.6
Q ss_pred CCCccEEEccCCcCCCCChhhh--cCCCCCCEEeCCCCccccccC----CccCCCCCCCEEEccCCcCCcccCCcCCCCC
Q psy16110 495 LLNLKYLCLAHNHLTEIPEMMF--KNLLNLTYLDLSNNNIVNLRV----GSLYGLPSMKRLDLSFNKLTTFKGDYFNTKS 568 (719)
Q Consensus 495 ~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~i~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 568 (719)
.++|++|++++|.+.+..+..+ ..+++|++|++++|++++..+ ..+..+++|++|++++|+++.+++..+.
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~--- 166 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR--- 166 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC---
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc---
Confidence 3457777777777665554444 666777777777777665332 2334667777777777777666655543
Q ss_pred CCCCCCCcEEECcCCCCCCc---C-cCcccCCCCccEEEcCCCCCCCcChh---hhcCCCCCCEEECCCCCCcccCcccC
Q psy16110 569 KPNTSSLEELNLNNNELTYL---F-PSSFTIHSKLKTLKLAFNKFNYFPKE---LILGLSYLQEIDLSNNQLKTIDDYDY 641 (719)
Q Consensus 569 ~~~l~~L~~L~Ls~n~l~~~---~-~~~~~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~l 641 (719)
.+++|++|++++|++.+. . +..+..+++|++|++++|+++.++.. .+.++++|++|++++|++++..+..+
T Consensus 167 --~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 167 --AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp --CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred --cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence 347777777777776542 1 22346778888888888888765542 34677888888888888888754455
Q ss_pred CCC---CCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceee
Q psy16110 642 GYL---PRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQ 706 (719)
Q Consensus 642 ~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~ 706 (719)
..+ ++|++|++++|+++.++.. +. ++|++|||++|+++.+|. +..++.| .|++++|++.+
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~~lp~~-~~--~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLEQVPKG-LP--AKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCCSCCSC-CC--SCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTSC
T ss_pred HhccCcCcCCEEECCCCCCCchhhh-hc--CCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCCC
Confidence 555 6888888888888877554 32 788888888888888765 6778888 88888888843
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=2e-23 Score=221.52 Aligned_cols=254 Identities=20% Similarity=0.168 Sum_probs=196.6
Q ss_pred EEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCc----hhhcCCC-CccEEEccCCcCCCCChhhhcCC-----C
Q psy16110 451 HLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQ----YQFDELL-NLKYLCLAHNHLTEIPEMMFKNL-----L 520 (719)
Q Consensus 451 ~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~----~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l-----~ 520 (719)
.++++.| .+....+..+...++|++|++++|.++..+. ..+..++ +|++|++++|.++......+..+ +
T Consensus 2 ~~~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLH-PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCC-TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccc-cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 3567777 4444433444556679999999999999887 7788888 89999999999998877666654 9
Q ss_pred CCCEEeCCCCccccccCCc----cCCC-CCCCEEEccCCcCCcccCCcCCCCCCCC-CCCCcEEECcCCCCCCcCc----
Q psy16110 521 NLTYLDLSNNNIVNLRVGS----LYGL-PSMKRLDLSFNKLTTFKGDYFNTKSKPN-TSSLEELNLNNNELTYLFP---- 590 (719)
Q Consensus 521 ~L~~L~Ls~n~i~~~~~~~----l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~---- 590 (719)
+|++|++++|++++..+.. +..+ ++|++|++++|++++.+...+... +.. .++|++|++++|.+++...
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA-FSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH-HTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH-HHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 9999999999998876553 4444 899999999999987665433210 111 2689999999999986533
Q ss_pred CcccCCC-CccEEEcCCCCCCCcChhh----hcCC-CCCCEEECCCCCCcccCcc----cCCC-CCCCCEEeCCCCcCCC
Q psy16110 591 SSFTIHS-KLKTLKLAFNKFNYFPKEL----ILGL-SYLQEIDLSNNQLKTIDDY----DYGY-LPRLRKLNLNNNNIDA 659 (719)
Q Consensus 591 ~~~~~l~-~L~~L~L~~n~l~~~~~~~----l~~l-~~L~~L~Ls~n~l~~~~~~----~l~~-l~~L~~L~Ls~N~l~~ 659 (719)
..+..++ +|++|++++|+++...+.. +..+ ++|++|||++|.+++.... .+.. .++|++|+|++|++++
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 3345555 9999999999999887643 3445 6999999999999973221 3333 4699999999999998
Q ss_pred CCc----ccCCCCCCCcEEECCCCcCCCcChH-------hhcCcccc-EEecCCCceee
Q psy16110 660 ISE----TCFFNSSQLQIINLSFNRLEKLPER-------LFNTFLYT-NYDMAPNLVFQ 706 (719)
Q Consensus 660 ~~~----~~~~~l~~L~~L~Ls~N~l~~i~~~-------~~~~l~~L-~L~l~~N~l~~ 706 (719)
... ..+..+++|++|++++|.+..+.+. .+..+++| .+++++|++..
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 765 3457789999999999997766654 46678889 99999999854
No 92
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=7.4e-21 Score=186.36 Aligned_cols=155 Identities=22% Similarity=0.359 Sum_probs=128.3
Q ss_pred CEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEE
Q psy16110 547 KRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEI 626 (719)
Q Consensus 547 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 626 (719)
+.++++++.++.+|.... +++++|++++|.++++.+..|..+++|++|+|++|+++.+.+..|.++++|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--------~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L 85 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--------ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL 85 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--------TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEE
T ss_pred CEEEcCCCCcCcCCCccC--------cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEE
Confidence 567777777777765432 568888888888888877788888888888888888888877778888888888
Q ss_pred ECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCcee
Q psy16110 627 DLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVF 705 (719)
Q Consensus 627 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~ 705 (719)
+|++|+++.+++..|.++++|++|+|++|+++++++..|..+++|++|+|++|+++.+++..|..+++| +|++++|++
T Consensus 86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~- 164 (220)
T 2v9t_B 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF- 164 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE-
T ss_pred ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc-
Confidence 888888888888778888888888888888888888888888888888888888888888888888888 888888888
Q ss_pred eeccCCCccccC
Q psy16110 706 QSHLSGHRCECA 717 (719)
Q Consensus 706 ~~~~~~~~C~c~ 717 (719)
.|+|+
T Consensus 165 -------~c~c~ 169 (220)
T 2v9t_B 165 -------ICDCH 169 (220)
T ss_dssp -------ECSGG
T ss_pred -------CCCCc
Confidence 77775
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=203.09 Aligned_cols=201 Identities=25% Similarity=0.244 Sum_probs=101.8
Q ss_pred CcCcEEeCcCCCCCCCCCCCCC-CCCCCccEEEcCCCCCCCCCc----hhhcCCCCccEEEccCCcCCCCChhhhcCCCC
Q psy16110 447 PTLLHLNLSRNAHLSSLPVGGF-DPLKKLEVLDLAATGLKSIPQ----YQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN 521 (719)
Q Consensus 447 ~~L~~L~L~~n~~l~~l~~~~~-~~l~~L~~L~ls~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 521 (719)
++|++|++++|...+..+...+ ..+++|++|++++|.+....+ ..+..+++|++|++++|.+..++...|..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 4456666666522223332222 555666666666666654221 23345666777777777776666666666677
Q ss_pred CCEEeCCCCcccc---cc-CCccCCCCCCCEEEccCCcCCcccCC---cCCCCCCCCCCCCcEEECcCCCCCCcCcCccc
Q psy16110 522 LTYLDLSNNNIVN---LR-VGSLYGLPSMKRLDLSFNKLTTFKGD---YFNTKSKPNTSSLEELNLNNNELTYLFPSSFT 594 (719)
Q Consensus 522 L~~L~Ls~n~i~~---~~-~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 594 (719)
|++|++++|++.+ .. +..+..+++|++|++++|+++.++.. .+. .+++|++|++++|++++..|..+.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~-----~l~~L~~L~Ls~N~l~~~~p~~~~ 245 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA-----AGVQPHSLDLSHNSLRATVNPSAP 245 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH-----HTCCCSSEECTTSCCCCCCCSCCS
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh-----cCCCCCEEECCCCCCCccchhhHH
Confidence 7777777776543 21 12234566666666666666543321 111 135566666666666555444444
Q ss_pred CC---CCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcC
Q psy16110 595 IH---SKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNI 657 (719)
Q Consensus 595 ~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 657 (719)
.+ ++|++|++++|+++.+|... .++|++|++++|++++++. +..+++|+.|++++|++
T Consensus 246 ~~~~~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAGLEQVPKGL---PAKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCCCCTTCCCEECCSSCCCSCCSCC---CSCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTT
T ss_pred hccCcCcCCEEECCCCCCCchhhhh---cCCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCC
Confidence 33 34555555555554444321 1344444444444444322 33344444444444444
No 94
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=1.1e-20 Score=200.03 Aligned_cols=161 Identities=25% Similarity=0.403 Sum_probs=131.0
Q ss_pred CCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCC
Q psy16110 545 SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQ 624 (719)
Q Consensus 545 ~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 624 (719)
.++.|+|++|+++.++...+.. .+++|++|+|++|+++++.+..|..+++|++|+|++|+++.+++..|.++++|+
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~----~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPT----RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSS----CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCEEECCCCCCCccChhhhhh----cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 3555666666655555444430 246777777777777777777788888888888888888888888888899999
Q ss_pred EEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccC---CCCCCCcEEECCCCcCCCcChHhhcCccc--c-EEe
Q psy16110 625 EIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCF---FNSSQLQIINLSFNRLEKLPERLFNTFLY--T-NYD 698 (719)
Q Consensus 625 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~--L-~L~ 698 (719)
+|+|++|+++++.+..|.++++|+.|+|++|+++.+++..| ..+++|+.|||++|+|+.+|...|..++. + .|+
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEE
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEE
Confidence 99999999999888889999999999999999999888777 56899999999999999999988988887 5 899
Q ss_pred cCCCceeeeccCCCccccC
Q psy16110 699 MAPNLVFQSHLSGHRCECA 717 (719)
Q Consensus 699 l~~N~l~~~~~~~~~C~c~ 717 (719)
|++||+ .|+|+
T Consensus 196 l~~N~~--------~C~C~ 206 (361)
T 2xot_A 196 LHNNPL--------ECDCK 206 (361)
T ss_dssp CCSSCE--------ECCHH
T ss_pred ecCCCc--------cCCcC
Confidence 999999 89985
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=183.58 Aligned_cols=150 Identities=25% Similarity=0.331 Sum_probs=97.1
Q ss_pred CEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCc-CcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCE
Q psy16110 547 KRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFP-SSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE 625 (719)
Q Consensus 547 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 625 (719)
+.+++++|.++.++.... ..+++|++++|.+++..+ ..|..+++|++|++++|+++.+++..|.++++|++
T Consensus 14 ~~l~~s~n~l~~iP~~~~--------~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--------QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--------TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CEeEeCCCCcccCccCCC--------CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence 356666666665554332 345666666666666633 34566666666666666666666666666666666
Q ss_pred EECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCce
Q psy16110 626 IDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLV 704 (719)
Q Consensus 626 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l 704 (719)
|+|++|.++++++..|.++++|++|+|++|+++++++..|..+++|++|+|++|+++.+++..|..+++| .|++++|++
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 6666666666666666666666666666666666666666666666777776666666666666666666 667777766
No 96
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=1e-20 Score=200.36 Aligned_cols=187 Identities=24% Similarity=0.320 Sum_probs=126.0
Q ss_pred CCCcccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCcc
Q psy16110 103 DFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDK 182 (719)
Q Consensus 103 ~~~~~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~ 182 (719)
.||..|.|.. ..++|.+..++ .+|. .++. .++.|+|++|+|+.++..
T Consensus 11 ~Cp~~C~C~~-----~~l~c~~~~l~-----~iP~-------------------~~~~----~l~~L~Ls~N~l~~l~~~ 57 (361)
T 2xot_A 11 SCPANCLCAS-----NILSCSKQQLP-----NVPQ-------------------SLPS----YTALLDLSHNNLSRLRAE 57 (361)
T ss_dssp TCCTTCEEET-----TEEECCSSCCS-----SCCS-------------------SCCT----TCSEEECCSSCCCEECTT
T ss_pred CCCCCCEECC-----CEEEeCCCCcC-----ccCc-------------------cCCC----CCCEEECCCCCCCccChh
Confidence 4566899973 46888776554 3332 2222 488999999999988887
Q ss_pred cccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCC
Q psy16110 183 LFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSL 262 (719)
Q Consensus 183 ~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l 262 (719)
.|...+++|++|+|++|.+++ +.+.+|.++++|++|+|++|+++.+++..|.++++|++|+|++|.++.+++..|
T Consensus 58 ~~~~~l~~L~~L~L~~N~i~~-----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~ 132 (361)
T 2xot_A 58 WTPTRLTNLHSLLLSHNHLNF-----ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF 132 (361)
T ss_dssp SSSSCCTTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred hhhhcccccCEEECCCCcCCc-----cChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh
Confidence 774345777777777777765 333467777777777777777777777667777777777777777777666667
Q ss_pred CCCCCCcEEEcCCCcCcccCCCcc---cCCCccCEEEccCCCCcccCcccccCccc--CcEEEcCCCCCC
Q psy16110 263 NGPRALRILSMAYNRIGTLKADSF---LSQRWLERIILRGNRLTTIEGGAFNGLAK--IHILNLGYNRLN 327 (719)
Q Consensus 263 ~~l~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~--L~~L~L~~n~l~ 327 (719)
.++++|++|+|++|.++.++...| ..+++|++|++++|.++.+++..|..++. ++.|++++|++.
T Consensus 133 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 133 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 777777777777777777665555 45666666666666666666555555554 355666666553
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=3.2e-20 Score=180.45 Aligned_cols=182 Identities=23% Similarity=0.370 Sum_probs=133.4
Q ss_pred CCcccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCccc
Q psy16110 104 FPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKL 183 (719)
Q Consensus 104 ~~~~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~ 183 (719)
||..|+|. ...++|.+..+. . +|..++ .++++|++++|.++.++...
T Consensus 1 Cp~~C~C~-----~~~v~c~~~~l~-----~-------------------~p~~~~----~~l~~L~l~~n~l~~~~~~~ 47 (208)
T 2o6s_A 1 CPSRCSCS-----GTTVECYSQGRT-----S-------------------VPTGIP----AQTTYLDLETNSLKSLPNGV 47 (208)
T ss_dssp CCTTCEEE-----TTEEECCSSCCS-----S-------------------CCSCCC----TTCSEEECCSSCCCCCCTTT
T ss_pred CcCCCEEC-----CCEEEecCCCcc-----C-------------------CCCCCC----CCCcEEEcCCCccCcCChhh
Confidence 45688996 357888765544 2 332222 25899999999999888877
Q ss_pred ccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCC
Q psy16110 184 FSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLN 263 (719)
Q Consensus 184 f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~ 263 (719)
|. .+++|++|++++|.+++ +.+..|.++++|++|+|++|+++.+++..|.++++|++|++++|.++.+++..+.
T Consensus 48 ~~-~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 121 (208)
T 2o6s_A 48 FD-ELTSLTQLYLGGNKLQS-----LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD 121 (208)
T ss_dssp TT-TCTTCSEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred hc-ccccCcEEECCCCccCc-----cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhc
Confidence 74 56788888888888775 3334577788888888888888887777777888888888888888887776677
Q ss_pred CCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCC
Q psy16110 264 GPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNS 331 (719)
Q Consensus 264 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 331 (719)
.+++|++|++++|.++.+++..|..+++|++|++++|.+. ..+++|++|+++.|++++.-+
T Consensus 122 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 122 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBB
T ss_pred cCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceee
Confidence 7888888888888887777767777788888888877654 345567777777777765433
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=7.6e-20 Score=179.14 Aligned_cols=162 Identities=21% Similarity=0.410 Sum_probs=97.9
Q ss_pred CCCcccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCcc
Q psy16110 103 DFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDK 182 (719)
Q Consensus 103 ~~~~~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~ 182 (719)
.||..|+|.. ..++|.+..++ .+ |..++ .+++.|++++|.|+.++..
T Consensus 4 ~CP~~C~C~~-----~~v~c~~~~l~-----~i-------------------P~~l~----~~l~~L~l~~n~i~~i~~~ 50 (220)
T 2v9t_B 4 HCPAACTCSN-----NIVDCRGKGLT-----EI-------------------PTNLP----ETITEIRLEQNTIKVIPPG 50 (220)
T ss_dssp CSCTTSEEET-----TEEECTTSCCS-----SC-------------------CSSCC----TTCCEEECCSSCCCEECTT
T ss_pred CCCCCCEECC-----CEEEcCCCCcC-----cC-------------------CCccC----cCCCEEECCCCcCCCcCHh
Confidence 4667899973 46788765554 33 32222 2488888888888888876
Q ss_pred cccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCC
Q psy16110 183 LFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSL 262 (719)
Q Consensus 183 ~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l 262 (719)
.|. .+++|++|+|++|.+++ +.+.+|.++++|++|+|++|+++.+++..|.++++|++|+|++|.++.+++..|
T Consensus 51 ~~~-~l~~L~~L~Ls~N~i~~-----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~ 124 (220)
T 2v9t_B 51 AFS-PYKKLRRIDLSNNQISE-----LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF 124 (220)
T ss_dssp SST-TCTTCCEEECCSSCCCE-----ECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred Hhh-CCCCCCEEECCCCcCCC-----cCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHc
Confidence 664 44566666666666654 223455566666666666666666655555556666666666666665555555
Q ss_pred CCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCc
Q psy16110 263 NGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLT 303 (719)
Q Consensus 263 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~ 303 (719)
..+++|++|++++|.++.+.+..|..+++|++|++++|.+.
T Consensus 125 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 55555555555555555555555555555555555555543
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=8.2e-20 Score=202.69 Aligned_cols=210 Identities=25% Similarity=0.334 Sum_probs=126.2
Q ss_pred CccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEcc
Q psy16110 473 KLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS 552 (719)
Q Consensus 473 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 552 (719)
+++.|++++|++++++... .++|++|++++|.++.++ ..+++|++|++++|+++++ |. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECC
Confidence 4555555555555544322 245666666666666555 2346666666666666663 33 333 67777777
Q ss_pred CCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCC
Q psy16110 553 FNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632 (719)
Q Consensus 553 ~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 632 (719)
+|+++.++. .+++|+.|++++|.++++ |. .+++|++|++++|+++.+|. +. ++|+.|+|++|+
T Consensus 129 ~N~l~~lp~---------~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 129 NNQLTMLPE---------LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNL 191 (571)
T ss_dssp SSCCSCCCC---------CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSC
T ss_pred CCcCCCCCC---------cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCC
Confidence 776666544 136677777777777764 33 45677777777777777665 44 777888888887
Q ss_pred CcccCcccCCCCCCC-------CEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCccc-------c-EE
Q psy16110 633 LKTIDDYDYGYLPRL-------RKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLY-------T-NY 697 (719)
Q Consensus 633 l~~~~~~~l~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~-------L-~L 697 (719)
|+.++. +.. +| +.|+|++|+|+.+++. +..+++|+.|+|++|+++...+..|..++. - ++
T Consensus 192 L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~~~~~~ 266 (571)
T 3cvr_A 192 LESLPA--VPV--RNHHSEETEIFFRCRENRITHIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266 (571)
T ss_dssp CSSCCC--CC----------CCEEEECCSSCCCCCCGG-GGGSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---CEEEC
T ss_pred CCchhh--HHH--hhhcccccceEEecCCCcceecCHH-HhcCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccCCeeEE
Confidence 776665 433 56 8899999999887765 445889999999999988665555555432 1 45
Q ss_pred ecCCCceeeeccCCCccccC
Q psy16110 698 DMAPNLVFQSHLSGHRCECA 717 (719)
Q Consensus 698 ~l~~N~l~~~~~~~~~C~c~ 717 (719)
++++|.+...+-+ .|+|.
T Consensus 267 ~l~~~~~~~~~~p--~~~~~ 284 (571)
T 3cvr_A 267 SMSDGQQNTLHRP--LADAV 284 (571)
T ss_dssp CC----------C--CSHHH
T ss_pred eeccccccccccc--chhhH
Confidence 6666555433333 56663
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=9.7e-20 Score=179.63 Aligned_cols=150 Identities=21% Similarity=0.271 Sum_probs=104.0
Q ss_pred CCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCE
Q psy16110 546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE 625 (719)
Q Consensus 546 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 625 (719)
.+.++++++.++.++.... ++|++|++++|.++++.+..|..+++|++|+|++|+++.+++..|..+++|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 92 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV 92 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEeEccCCCcCccCCCCC--------CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCE
Confidence 4556666666666654332 56777777777777776666777777777777777777777666677777777
Q ss_pred EECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCce
Q psy16110 626 IDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLV 704 (719)
Q Consensus 626 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l 704 (719)
|+|++|+++++++..|..+++|++|++++|+++.++. .+..+++|++|+|++|+++.+++..|..+++| .|++++||+
T Consensus 93 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred EECCCCcCCccChhHhCcchhhCeEeccCCcccccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 7777777777766666777777777777777775543 35666777777777777777776667777777 777777777
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=8.1e-20 Score=178.94 Aligned_cols=132 Identities=23% Similarity=0.387 Sum_probs=71.3
Q ss_pred ccEEEcCCCCccccC-cccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110 166 IRRLDFSGNALRRLS-DKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL 244 (719)
Q Consensus 166 L~~L~Ls~n~i~~l~-~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 244 (719)
+++|+|++|.|+.++ ..+|. .+++|++|+|++|.+++ +.+.+|.++++|++|+|++|+++.+++..|.++++|
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~-~l~~L~~L~L~~N~i~~-----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 107 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFK-KLPQLRKINFSNNKITD-----IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL 107 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGG-GCTTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC
T ss_pred CCEEEcCCCcCCccCchhhhc-cCCCCCEEECCCCcCCE-----ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC
Confidence 677777777777663 33442 44555555555555554 222345555555555555555555555555555555
Q ss_pred cEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCc
Q psy16110 245 LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLT 303 (719)
Q Consensus 245 ~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~ 303 (719)
++|+|++|+++.+++..+..+++|++|++++|.++.+.+..|..+++|++|++++|.+.
T Consensus 108 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 55555555555554444555555555555555555554444555555555555555443
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=5.7e-22 Score=212.41 Aligned_cols=260 Identities=16% Similarity=0.139 Sum_probs=178.6
Q ss_pred cccccCCCcCcEEeCcCCCCCCCCCC----CCCCCCCCccEEEcCCCCCCCCC---chh-------hcCCCCccEEEccC
Q psy16110 440 PTAFTNVPTLLHLNLSRNAHLSSLPV----GGFDPLKKLEVLDLAATGLKSIP---QYQ-------FDELLNLKYLCLAH 505 (719)
Q Consensus 440 ~~~~~~l~~L~~L~L~~n~~l~~l~~----~~~~~l~~L~~L~ls~n~l~~~~---~~~-------~~~~~~L~~L~L~~ 505 (719)
...+..+++|++|++++| .++.... ..+..+++|++|++++|.+..+. +.. +..+++|++|++++
T Consensus 25 ~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp SHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 345677889999999999 5554322 22567889999999997665432 212 36788999999999
Q ss_pred CcCCCC----ChhhhcCCCCCCEEeCCCCccccccCCccC----CC---------CCCCEEEccCCcCCcccCCcCCCCC
Q psy16110 506 NHLTEI----PEMMFKNLLNLTYLDLSNNNIVNLRVGSLY----GL---------PSMKRLDLSFNKLTTFKGDYFNTKS 568 (719)
Q Consensus 506 n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~----~l---------~~L~~L~L~~n~l~~~~~~~~~~~~ 568 (719)
|.++.. .+..+..+++|++|++++|.++...+..+. .+ ++|++|++++|+++......+. ..
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA-KT 182 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH-HH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH-HH
Confidence 998873 233567889999999999998754433333 33 8899999999988632211100 00
Q ss_pred CCCCCCCcEEECcCCCCCC-----cCcCcccCCCCccEEEcCCCCCC----CcChhhhcCCCCCCEEECCCCCCccc---
Q psy16110 569 KPNTSSLEELNLNNNELTY-----LFPSSFTIHSKLKTLKLAFNKFN----YFPKELILGLSYLQEIDLSNNQLKTI--- 636 (719)
Q Consensus 569 ~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~--- 636 (719)
+..+++|++|++++|.++. ..+..+..+++|++|+|++|.++ ...+..+..+++|++|+|++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 1234789999999998873 34447788889999999998885 22234577888899999999988765
Q ss_pred -CcccC--CCCCCCCEEeCCCCcCCC-----CCcccCCCCCCCcEEECCCCcCCCcC---hHhhcCcccc-EEecCC
Q psy16110 637 -DDYDY--GYLPRLRKLNLNNNNIDA-----ISETCFFNSSQLQIINLSFNRLEKLP---ERLFNTFLYT-NYDMAP 701 (719)
Q Consensus 637 -~~~~l--~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~i~---~~~~~~l~~L-~L~l~~ 701 (719)
.+..+ ..+++|+.|+|++|++++ ++...+.++++|++|++++|+++... ..+...++.+ .+.+..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 22234 347889999999998887 33332256788999999999888666 3333344554 444433
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=4e-22 Score=213.58 Aligned_cols=240 Identities=16% Similarity=0.120 Sum_probs=149.5
Q ss_pred CCCccEEEccCCCCCCcCc----ccccCCCcCcEEeCcCCCCCCCC----CCC------CCCCCCCccEEEcCCCCCCCC
Q psy16110 422 YKLLTKLDLSHNNLKELEP----TAFTNVPTLLHLNLSRNAHLSSL----PVG------GFDPLKKLEVLDLAATGLKSI 487 (719)
Q Consensus 422 ~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~~l~~l----~~~------~~~~l~~L~~L~ls~n~l~~~ 487 (719)
+++|+.|++++|.+....+ ..+..+++|++|++++| .+..+ |.. .+..+++|++|++++|.+...
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 4555666666665554322 22445566666666665 33322 211 124567777777777777662
Q ss_pred ----CchhhcCCCCccEEEccCCcCCCCChhhh----cCC---------CCCCEEeCCCCccccc-cC---CccCCCCCC
Q psy16110 488 ----PQYQFDELLNLKYLCLAHNHLTEIPEMMF----KNL---------LNLTYLDLSNNNIVNL-RV---GSLYGLPSM 546 (719)
Q Consensus 488 ----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----~~l---------~~L~~L~Ls~n~i~~~-~~---~~l~~l~~L 546 (719)
.+..+..+++|++|++++|.++......+ ..+ ++|++|++++|+++.. .+ ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 23356667778888888877754333222 223 7888888888887632 22 345567788
Q ss_pred CEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCC----CcCcCcccCCCCccEEEcCCCCCCCcC----hhhh-
Q psy16110 547 KRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELT----YLFPSSFTIHSKLKTLKLAFNKFNYFP----KELI- 617 (719)
Q Consensus 547 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l- 617 (719)
++|++++|+++......+....+..+++|++|+|++|.++ ..+|..+..+++|++|+|++|+++... +..+
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 8888888877632100000001123578888888888885 445667788888888888888887642 2334
Q ss_pred -cCCCCCCEEECCCCCCcc-----cCcccCCCCCCCCEEeCCCCcCCCCCc
Q psy16110 618 -LGLSYLQEIDLSNNQLKT-----IDDYDYGYLPRLRKLNLNNNNIDAISE 662 (719)
Q Consensus 618 -~~l~~L~~L~Ls~n~l~~-----~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 662 (719)
..+++|++|+|++|.+++ ++...+.++++|++|++++|++++..+
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 337888888888888887 444222567888888888888887663
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=2.6e-21 Score=203.13 Aligned_cols=106 Identities=15% Similarity=0.142 Sum_probs=44.7
Q ss_pred CcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCC-CchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEE
Q psy16110 447 PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI-PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYL 525 (719)
Q Consensus 447 ~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 525 (719)
++++.|++++| .++..+.. +..+++|++|++++|.+... .+..+..+++|++|++++|.++......+..+++|++|
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCc-cccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 44555555544 33332222 12344455555554444322 22234444455555555544443333334444445555
Q ss_pred eCCCC-ccccc-cCCccCCCCCCCEEEccCC
Q psy16110 526 DLSNN-NIVNL-RVGSLYGLPSMKRLDLSFN 554 (719)
Q Consensus 526 ~Ls~n-~i~~~-~~~~l~~l~~L~~L~L~~n 554 (719)
++++| .+++. .+..+..+++|++|++++|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 55444 33331 2222334444444444444
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=5.5e-19 Score=171.64 Aligned_cols=168 Identities=25% Similarity=0.292 Sum_probs=118.5
Q ss_pred CEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEE
Q psy16110 523 TYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTL 602 (719)
Q Consensus 523 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 602 (719)
+.++.+++.++.+... ..++|++|++++|+++.++...+. .+++|++|++++|+++++.+..|..+++|++|
T Consensus 10 ~~v~c~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG---IPAQTTYLDLETNSLKSLPNGVFD-----ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYL 81 (208)
T ss_dssp TEEECCSSCCSSCCSC---CCTTCSEEECCSSCCCCCCTTTTT-----TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEecCCCccCCCCC---CCCCCcEEEcCCCccCcCChhhhc-----ccccCcEEECCCCccCccChhhcCCCCCcCEE
Confidence 4666777766665322 235777888888777766655543 34777788888777777766667777778888
Q ss_pred EcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCC
Q psy16110 603 KLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE 682 (719)
Q Consensus 603 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 682 (719)
++++|+++.+++..+..+++|++|++++|+++++++..|.++++|++|++++|+++++++..|..+++|++|++++|++.
T Consensus 82 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 82 NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 88777777777776777777888888777777777766777777778888777777777766777777778888777664
Q ss_pred CcChHhhcCcccc-EEecCCCcee
Q psy16110 683 KLPERLFNTFLYT-NYDMAPNLVF 705 (719)
Q Consensus 683 ~i~~~~~~~l~~L-~L~l~~N~l~ 705 (719)
. .++.| ++++++|.+.
T Consensus 162 ~-------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 162 C-------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp C-------CTTTTHHHHHHHHHCT
T ss_pred c-------CCCCHHHHHHHHHhCC
Confidence 3 23455 5566666554
No 106
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.81 E-value=1.1e-18 Score=186.32 Aligned_cols=263 Identities=16% Similarity=0.237 Sum_probs=179.6
Q ss_pred CCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEE
Q psy16110 423 KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLC 502 (719)
Q Consensus 423 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ 502 (719)
..++.+.+.+ .++.+...+|.++ +|+.+.+..+ +..++..+|.++ +|+.+.+.. .++.+...+|.++.+|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 4455555543 4556666666664 5677766654 666666666664 577777764 56666666777777777777
Q ss_pred ccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcC
Q psy16110 503 LAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNN 582 (719)
Q Consensus 503 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 582 (719)
+.+|.++.++..+|. +.+|+.+.+.. .+..+...+|.++++|+.+.+..+ ++.++...|.. .+|+.+++ .
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~------~~L~~i~l-p 256 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE------SGITTVKL-P 256 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT------CCCSEEEE-E
T ss_pred cCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc------CCccEEEe-C
Confidence 777777777776666 46777777763 366666677777777777777653 55555555542 46777777 3
Q ss_pred CCCCCcCcCcccCCCCccEEEcCCCCCC-----CcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcC
Q psy16110 583 NELTYLFPSSFTIHSKLKTLKLAFNKFN-----YFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNI 657 (719)
Q Consensus 583 n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 657 (719)
+.++.+...+|..+++|+++.+.+|.+. .++..+|.+|++|+.+++. +.+..+...+|.++++|+.++|..+ +
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-c
Confidence 4566666677777777777777776554 5777777788888888887 4477777777888888888888544 7
Q ss_pred CCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcc-cc-EEecCCCce
Q psy16110 658 DAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL-YT-NYDMAPNLV 704 (719)
Q Consensus 658 ~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-~L-~L~l~~N~l 704 (719)
+.+...+|.++ +|+.|++++|.+..++...|.+++ .+ .|.+..+.+
T Consensus 335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 77777777777 788888888877777777777774 56 777766654
No 107
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=9.5e-21 Score=198.06 Aligned_cols=264 Identities=17% Similarity=0.195 Sum_probs=169.7
Q ss_pred CCCccEEEccCCCCC--CcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCC--------CCCccEEEcCCCCCCCCCchh
Q psy16110 422 YKLLTKLDLSHNNLK--ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP--------LKKLEVLDLAATGLKSIPQYQ 491 (719)
Q Consensus 422 ~~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~--------l~~L~~L~ls~n~l~~~~~~~ 491 (719)
+++|+.|||++|++. ...... ++.+..+.+..+ .+|..+|.+ +++|+.+++.+ .++.++..+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred hccCeEEecCcceeEEecCcccc---cccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence 455666666666665 222111 122333333333 456666666 77777777777 677777777
Q ss_pred hcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCc----cccccCCccCCCCCCC-EEEccCCcCCcccCCcCCC
Q psy16110 492 FDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNN----IVNLRVGSLYGLPSMK-RLDLSFNKLTTFKGDYFNT 566 (719)
Q Consensus 492 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~ 566 (719)
|.++++|+.+++.+|.+..++..+|..+.++.++....+. ...+...+|.++..|+ .+.+.... .++...+..
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~--~l~~~~~~~ 197 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG--KLEDEIMKA 197 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC--CHHHHHHHT
T ss_pred hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC--cHHHHHhhc
Confidence 7777777777777777777777777776666666655432 2223344555566665 44443221 111111110
Q ss_pred CCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCC
Q psy16110 567 KSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPR 646 (719)
Q Consensus 567 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 646 (719)
. ....++..+.+.++-...........+++|+++++++|+++.++..+|.++++|+.|++.+| +..+++.+|.++++
T Consensus 198 ~--~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~ 274 (329)
T 3sb4_A 198 G--LQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGR 274 (329)
T ss_dssp T--CCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred c--cCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChh
Confidence 0 11245566666554221111111123788888888888888888888888888888888887 88888888888888
Q ss_pred CC-EEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEec
Q psy16110 647 LR-KLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDM 699 (719)
Q Consensus 647 L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l 699 (719)
|+ .+++.+ +++.+.+.+|.+|++|+.|++++|.++.|++.+|.++++| .+..
T Consensus 275 L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 275 LAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 88 888887 7888888888888888888888888888888888888888 7653
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=1.6e-19 Score=184.95 Aligned_cols=174 Identities=29% Similarity=0.375 Sum_probs=97.3
Q ss_pred CCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCE
Q psy16110 469 DPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKR 548 (719)
Q Consensus 469 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 548 (719)
..+++|+.|++++|.+..++ .+..+++|++|++++|++++++. +..+++|++|++++|++++.. .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--hhccCCCCCE
Confidence 34556666666666666554 24556666666666666665554 555666666666666665532 2555566666
Q ss_pred EEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEEC
Q psy16110 549 LDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDL 628 (719)
Q Consensus 549 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 628 (719)
|++++|++++++ .+ ..+++|++|++++|++++. ..+..+++|++|++++|+++++++ +..+++|+.|++
T Consensus 117 L~L~~n~i~~~~--~l-----~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 117 LSLEHNGISDIN--GL-----VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185 (291)
T ss_dssp EECTTSCCCCCG--GG-----GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred EECCCCcCCCCh--hh-----cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEEC
Confidence 666666655442 11 1235566666666655554 345555555555555555555544 455555555555
Q ss_pred CCCCCcccCcccCCCCCCCCEEeCCCCcCCCCC
Q psy16110 629 SNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAIS 661 (719)
Q Consensus 629 s~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 661 (719)
++|.+++++. +..+++|+.|++++|+++..+
T Consensus 186 ~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 186 SKNHISDLRA--LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CSSCCCBCGG--GTTCTTCSEEEEEEEEEECCC
T ss_pred CCCcCCCChh--hccCCCCCEEECcCCcccCCc
Confidence 5555555432 455555555555555555443
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=1.1e-18 Score=193.75 Aligned_cols=177 Identities=23% Similarity=0.352 Sum_probs=154.2
Q ss_pred CccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCc
Q psy16110 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLE 576 (719)
Q Consensus 497 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ 576 (719)
+++.|++++|.++++|... .++|++|++++|+++.+ | ..+++|++|++++|+++.++. +. .+|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~ip~--l~-------~~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLSTLPE--LP-------ASLK 123 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC--CC-------TTCC
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCCcch--hh-------cCCC
Confidence 8999999999999988754 37899999999999976 4 457999999999999998765 32 3899
Q ss_pred EEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCc
Q psy16110 577 ELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNN 656 (719)
Q Consensus 577 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 656 (719)
+|++++|.++++ |. .+++|++|++++|+++++|. .+++|++|++++|++++++. +. ++|+.|+|++|+
T Consensus 124 ~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 124 HLDVDNNQLTML-PE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNL 191 (571)
T ss_dssp EEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSC
T ss_pred EEECCCCcCCCC-CC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCC
Confidence 999999999996 44 68999999999999999886 57899999999999999776 55 899999999999
Q ss_pred CCCCCcccCCCCCCC-------cEEECCCCcCCCcChHhhcCcccc-EEecCCCceee
Q psy16110 657 IDAISETCFFNSSQL-------QIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQ 706 (719)
Q Consensus 657 l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~ 706 (719)
|+.++. |.. +| +.|+|++|+|+.+|..++. +++| .|+|++|++..
T Consensus 192 L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 192 LESLPA--VPV--RNHHSEETEIFFRCRENRITHIPENILS-LDPTCTIILEDNPLSS 244 (571)
T ss_dssp CSSCCC--CC----------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECCSSSCCH
T ss_pred CCchhh--HHH--hhhcccccceEEecCCCcceecCHHHhc-CCCCCEEEeeCCcCCC
Confidence 998776 543 77 9999999999999998765 9999 99999999965
No 110
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=1.6e-20 Score=197.13 Aligned_cols=232 Identities=15% Similarity=0.110 Sum_probs=118.5
Q ss_pred ccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCc-CcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEE
Q psy16110 400 DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKEL-EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLD 478 (719)
Q Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ 478 (719)
+.++.|++++|.+.+..+..+.+++|++|++++|.+.+. .+..+..+++|++|++++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~--------------------- 128 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL--------------------- 128 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC---------------------
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc---------------------
Confidence 344555555555444444444455555555555554432 2333444444444444444
Q ss_pred cCCCCCCCCCchhhcCCCCccEEEccCC-cCCCC-ChhhhcCCCCCCEEeCCCC-ccccc-cCCccCCCC-CCCEEEccC
Q psy16110 479 LAATGLKSIPQYQFDELLNLKYLCLAHN-HLTEI-PEMMFKNLLNLTYLDLSNN-NIVNL-RVGSLYGLP-SMKRLDLSF 553 (719)
Q Consensus 479 ls~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n-~i~~~-~~~~l~~l~-~L~~L~L~~ 553 (719)
.++......+..+++|++|++++| .++.. ....+..+++|++|++++| .+++. .+..+..++ +|++|++++
T Consensus 129 ----~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 129 ----RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp ----BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred ----ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 333333334444555555555555 34321 1222444555566666555 55542 233444555 666666666
Q ss_pred Cc--CCc--ccCCcCCCCCCCCCCCCcEEECcCCC-CCCcCcCcccCCCCccEEEcCCCC-CCCcChhhhcCCCCCCEEE
Q psy16110 554 NK--LTT--FKGDYFNTKSKPNTSSLEELNLNNNE-LTYLFPSSFTIHSKLKTLKLAFNK-FNYFPKELILGLSYLQEID 627 (719)
Q Consensus 554 n~--l~~--~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~ 627 (719)
|. +++ ++ ..+ ..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|+
T Consensus 205 ~~~~~~~~~l~-~~~-----~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 278 (336)
T 2ast_B 205 YRKNLQKSDLS-TLV-----RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278 (336)
T ss_dssp CGGGSCHHHHH-HHH-----HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred CcccCCHHHHH-HHH-----hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEe
Confidence 52 221 11 111 123666677776666 555555566677777777777774 2222222456677777777
Q ss_pred CCCCCCcccCcccCCCC-CCCCEEeCCCCcCCCCCcccCC
Q psy16110 628 LSNNQLKTIDDYDYGYL-PRLRKLNLNNNNIDAISETCFF 666 (719)
Q Consensus 628 Ls~n~l~~~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~ 666 (719)
+++| + +...+..+ ..++.|++++|+++++.+..+.
T Consensus 279 l~~~-i---~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 279 VFGI-V---PDGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CTTS-S---CTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred ccCc-c---CHHHHHHHHhhCcceEEecccCccccCCccc
Confidence 7777 3 22223333 2366666777777777665544
No 111
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.79 E-value=6.2e-18 Score=181.29 Aligned_cols=136 Identities=18% Similarity=0.329 Sum_probs=69.3
Q ss_pred CccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcC
Q psy16110 175 ALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRF 254 (719)
Q Consensus 175 ~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (719)
.++.|+..+|. .+.+|+.+.+..+ +.. |+..+|.+|++|+.+++..+ ++.+...+|.++.+|+.+.+..+ +
T Consensus 58 ~VtsIg~~AF~-~c~~L~~i~lp~~-i~~-----I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l 128 (394)
T 4fs7_A 58 DVVSIGYAAFQ-GCRKVTEIKIPST-VRE-----IGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-L 128 (394)
T ss_dssp EEEEECTTTTT-TCTTEEEEECCTT-CCE-----ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-C
T ss_pred eEeEhHHHHhh-CCCCceEEEeCCC-ccC-----cchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-e
Confidence 45677777775 4466666666543 222 33456666666666666543 55666666666666666555432 4
Q ss_pred CcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcC
Q psy16110 255 TSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLG 322 (719)
Q Consensus 255 ~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 322 (719)
+.+...+|.++..++.... ..+..+...+|.++.+|+.+.+.++ +..+...+|.++.+|+.+++.
T Consensus 129 ~~i~~~aF~~~~~~~~~~~--~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 129 KSIGVEAFKGCDFKEITIP--EGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLP 193 (394)
T ss_dssp CEECTTTTTTCCCSEEECC--TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred eeecceeeecccccccccC--ccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcC
Confidence 4555545555443322221 1223333444555555555555432 233444444444444444443
No 112
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=5.5e-20 Score=192.22 Aligned_cols=266 Identities=14% Similarity=0.132 Sum_probs=194.1
Q ss_pred hccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccC--------CCcCcEEeCcCCCCCCCCCCCCCCC
Q psy16110 399 EDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTN--------VPTLLHLNLSRNAHLSSLPVGGFDP 470 (719)
Q Consensus 399 ~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~L~~n~~l~~l~~~~~~~ 470 (719)
+++|+.|+|++|++.........++.++.+.+..+ .++..+|.+ +++|+.|++.+ .++.++..+|.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhc
Confidence 45677777777777632222222333444555544 455667777 89999999987 578888888999
Q ss_pred CCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCC----cCCCCChhhhcCCCCCC-EEeCCCCcc-ccccCCccCCCC
Q psy16110 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN----HLTEIPEMMFKNLLNLT-YLDLSNNNI-VNLRVGSLYGLP 544 (719)
Q Consensus 471 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n----~l~~~~~~~~~~l~~L~-~L~Ls~n~i-~~~~~~~l~~l~ 544 (719)
+++|+.+++++|.+..++..+|.++.++..+....+ ....+...+|..+..|+ .+.+..... .......-....
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR 202 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence 999999999999888888888888887877776653 23455556677777777 555544321 111111112345
Q ss_pred CCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCC
Q psy16110 545 SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQ 624 (719)
Q Consensus 545 ~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 624 (719)
+++.+.+.++- .......+. ..+++|+.++|++|+++.+.+.+|..+++|++|++.+| ++.++..+|.++++|+
T Consensus 203 ~~~~l~~~~~l-~~~~~~~l~----~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 203 DINFLTIEGKL-DNADFKLIR----DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp GCSEEEEEECC-CHHHHHHHH----HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred ccceEEEeeee-cHHHHHHHH----HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence 66777776542 111111111 12588999999999999998899999999999999998 8899999999999999
Q ss_pred -EEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEEC
Q psy16110 625 -EIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINL 676 (719)
Q Consensus 625 -~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 676 (719)
.+++.+ .++.+.+.+|.+|++|+.+++++|+++.+.+.+|.++++|+.|..
T Consensus 277 ~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 277 GTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999988 889999999999999999999999999999999999999998864
No 113
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=7.8e-19 Score=179.85 Aligned_cols=201 Identities=19% Similarity=0.282 Sum_probs=166.8
Q ss_pred CccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEcc
Q psy16110 473 KLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS 552 (719)
Q Consensus 473 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 552 (719)
++..+.+..+.+..+.. +..+++|++|++++|.+..++. +..+++|++|++++|+++++.+ +..+++|++|+++
T Consensus 25 ~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 34455666666666543 4567889999999999998864 7889999999999999998765 8899999999999
Q ss_pred CCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCC
Q psy16110 553 FNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632 (719)
Q Consensus 553 ~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 632 (719)
+|++++++. + ..+++|++|++++|++++. ..+..+++|++|++++|+++.+ ..+..+++|++|++++|.
T Consensus 99 ~n~l~~~~~--l-----~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 99 ENKVKDLSS--L-----KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp SSCCCCGGG--G-----TTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred CCcCCCChh--h-----ccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCc
Confidence 999987653 2 3468999999999999986 4688899999999999999988 357889999999999999
Q ss_pred CcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCccc
Q psy16110 633 LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLY 694 (719)
Q Consensus 633 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 694 (719)
++++++ +..+++|+.|++++|++++++. +..+++|+.|++++|+++..|...+..+..
T Consensus 168 l~~~~~--l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 225 (291)
T 1h6t_A 168 ISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVV 225 (291)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECCCEECCSEEEE
T ss_pred cccchh--hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCcccCCccccccccEE
Confidence 998876 8889999999999999998753 888999999999999998777654444333
No 114
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.78 E-value=1.1e-17 Score=178.47 Aligned_cols=254 Identities=16% Similarity=0.285 Sum_probs=203.2
Q ss_pred ccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchh
Q psy16110 412 ITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQ 491 (719)
Q Consensus 412 l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 491 (719)
++.+....+.-.+|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+..++..+|.++++|+.+++++|+++.++..+
T Consensus 124 i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a 199 (401)
T 4fdw_A 124 VKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST 199 (401)
T ss_dssp CCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT
T ss_pred cCEehHhhcccCCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhh
Confidence 4555555555446778887665 777777778774 688888875 577788888888888888888888888888888
Q ss_pred hcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCC
Q psy16110 492 FDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPN 571 (719)
Q Consensus 492 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 571 (719)
|. +.+|+.+.+..+ ++.++..+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.++.++...|. +
T Consensus 200 F~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~-----~ 269 (401)
T 4fdw_A 200 FV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFY-----Y 269 (401)
T ss_dssp TT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTT-----T
T ss_pred Ee-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhh-----C
Confidence 87 578888888744 77888888888888888888764 67777778877 788888884 456666666664 4
Q ss_pred CCCCcEEECcCCCCC-----CcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCC
Q psy16110 572 TSSLEELNLNNNELT-----YLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPR 646 (719)
Q Consensus 572 l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 646 (719)
|++|+.+++.+|.+. .+.+.+|..|++|+.+.+. +.++.++..+|.+|++|+.++|..+ ++.+...+|.++ +
T Consensus 270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~ 346 (401)
T 4fdw_A 270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-G 346 (401)
T ss_dssp CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-C
T ss_pred CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-C
Confidence 688888888887665 5677889999999999998 4588999999999999999999654 888988899999 9
Q ss_pred CCEEeCCCCcCCCCCcccCCCCC-CCcEEECCCCcCC
Q psy16110 647 LRKLNLNNNNIDAISETCFFNSS-QLQIINLSFNRLE 682 (719)
Q Consensus 647 L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~ 682 (719)
|+.+++++|.+..+.+..|..++ .++.|.+..+.+.
T Consensus 347 L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 347 IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 99999999999998888888885 7889999887655
No 115
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.78 E-value=1e-17 Score=179.56 Aligned_cols=312 Identities=17% Similarity=0.265 Sum_probs=178.8
Q ss_pred cccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCC
Q psy16110 211 TSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQR 290 (719)
Q Consensus 211 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 290 (719)
..+|.++.+|+.+.+..+ ++.+...+|.+|.+|+.+++.++ ++.++..+|.++.+|+.+.+..+ +..+...+|.++.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 345666666666666533 66666666666666666666543 56666666666666666555433 5555555565554
Q ss_pred ccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCccccc
Q psy16110 291 WLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITI 370 (719)
Q Consensus 291 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~ 370 (719)
.++..... .+..+...+|.++++|+.+.+..+ +..++.. +|.++.+|+.+++..+ ++.++..+|.+
T Consensus 141 ~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~-----~F~~c~~L~~i~l~~~-~~~I~~~~F~~----- 206 (394)
T 4fs7_A 141 FKEITIPE--GVTVIGDEAFATCESLEYVSLPDS-METLHNG-----LFSGCGKLKSIKLPRN-LKIIRDYCFAE----- 206 (394)
T ss_dssp CSEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTT-----TTTTCTTCCBCCCCTT-CCEECTTTTTT-----
T ss_pred ccccccCc--cccccchhhhcccCCCcEEecCCc-cceeccc-----cccCCCCceEEEcCCC-ceEeCchhhcc-----
Confidence 33332222 233444556666666666666543 3334433 3445566666666544 44444444332
Q ss_pred ccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccC-CCCccEEEccCCCCCCcCcccccCCCcC
Q psy16110 371 FSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTL 449 (719)
Q Consensus 371 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 449 (719)
+..|+.+.+..+...--........|+.+.+... ++.+....+. +..++.+.+..+ ...+....|..+..+
T Consensus 207 ------~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l 278 (394)
T 4fs7_A 207 ------CILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGL 278 (394)
T ss_dssp ------CTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTC
T ss_pred ------ccccceeecCCCceEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC-cceeecccccccccc
Confidence 4455555554432221111222345555555432 3333333332 566666666554 334555566677777
Q ss_pred cEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCC
Q psy16110 450 LHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN 529 (719)
Q Consensus 450 ~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 529 (719)
+.+..... .++...|..+.+|+.+.+..+ ++.+...+|.++.+|+.+++..+ ++.+...+|.+|.+|+.+++..
T Consensus 279 ~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 279 KKVIYGSV----IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp CEEEECSS----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred ceeccCce----eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECc
Confidence 76666543 245555677777777777644 66677777777777777777643 6677777777777777777765
Q ss_pred CccccccCCccCCCCCCCEEEccCC
Q psy16110 530 NNIVNLRVGSLYGLPSMKRLDLSFN 554 (719)
Q Consensus 530 n~i~~~~~~~l~~l~~L~~L~L~~n 554 (719)
+ ++.+...+|.++++|+.+++..+
T Consensus 353 ~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 353 S-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp T-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred c-ccEehHHHhhCCCCCCEEEECCC
Confidence 5 66666777777777777777653
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=4.3e-18 Score=167.79 Aligned_cols=153 Identities=25% Similarity=0.314 Sum_probs=129.5
Q ss_pred ccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCc
Q psy16110 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLL 245 (719)
Q Consensus 166 L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 245 (719)
.+.++.+++.++.+|..+ .++|++|+|++|.+.+. .+..|.++++|++|+|++|++..+++..|.++++|+
T Consensus 21 ~~~v~c~~~~l~~ip~~~----~~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 91 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI----PTNAQILYLHDNQITKL-----EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91 (229)
T ss_dssp TTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCEeEccCCCcCccCCCC----CCCCCEEEcCCCccCcc-----CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence 577999999999999855 37899999999998873 335788899999999999999888888888899999
Q ss_pred EEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCC
Q psy16110 246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR 325 (719)
Q Consensus 246 ~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 325 (719)
+|+|++|+++.+++..+..+++|++|++++|.++.+ +..+..+++|++|++++|+++++++..|..+++|++|++++|+
T Consensus 92 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 92 VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 999999999988887788899999999999998877 4557888888888888888888887788888888888888887
Q ss_pred CCC
Q psy16110 326 LNK 328 (719)
Q Consensus 326 l~~ 328 (719)
+..
T Consensus 171 ~~c 173 (229)
T 3e6j_A 171 WDC 173 (229)
T ss_dssp BCT
T ss_pred ccC
Confidence 764
No 117
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=1.5e-18 Score=194.85 Aligned_cols=174 Identities=30% Similarity=0.399 Sum_probs=100.8
Q ss_pred CCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCE
Q psy16110 469 DPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKR 548 (719)
Q Consensus 469 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 548 (719)
..+++|+.|++++|.+..++ .+..+++|+.|+|++|.++.+++ +..+++|++|+|++|.+.++ ..+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence 34566666666666666654 35556666666666666666554 55666666666666666553 24556666666
Q ss_pred EEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEEC
Q psy16110 549 LDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDL 628 (719)
Q Consensus 549 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 628 (719)
|+|++|.+..++. + ..+++|+.|+|++|.++++ ..+..+++|+.|+|++|+++.+++ +..+++|+.|+|
T Consensus 114 L~Ls~N~l~~l~~--l-----~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 114 LSLEHNGISDING--L-----VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp EECTTSCCCCCGG--G-----GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred EEecCCCCCCCcc--c-----cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence 6666666554321 1 2245566666666666554 345555666666666666655544 455566666666
Q ss_pred CCCCCcccCcccCCCCCCCCEEeCCCCcCCCCC
Q psy16110 629 SNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAIS 661 (719)
Q Consensus 629 s~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 661 (719)
++|.+++++ .+..+++|+.|+|++|++.+.+
T Consensus 183 s~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 183 SKNHISDLR--ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CSSCCCBCG--GGTTCTTCSEEECCSEEEECCC
T ss_pred cCCCCCCCh--HHccCCCCCEEEccCCcCcCCc
Confidence 666655543 3555566666666666555543
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.74 E-value=2.1e-17 Score=157.97 Aligned_cols=130 Identities=25% Similarity=0.423 Sum_probs=96.4
Q ss_pred cEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCC
Q psy16110 576 EELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655 (719)
Q Consensus 576 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N 655 (719)
+.+++++|.++.+ |..+ .++|++|++++|+++.++ ..+.++++|++|++++|.++++++..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4566666666655 3322 256777777777777776 45677777778888777777777777777788888888888
Q ss_pred cCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeeeccCCCccccC
Q psy16110 656 NIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHLSGHRCECA 717 (719)
Q Consensus 656 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~~~~~C~c~ 717 (719)
+++++++..|..+++|++|+|++|+++.+++..|..+++| .|++++||+ .|+|+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~--------~C~c~ 143 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL--------YCDCN 143 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE--------ECSGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe--------ecCCc
Confidence 8887777777777888888888888888877777778888 888888887 67775
No 119
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=9.7e-18 Score=188.22 Aligned_cols=192 Identities=22% Similarity=0.335 Sum_probs=116.5
Q ss_pred EEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCc
Q psy16110 428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNH 507 (719)
Q Consensus 428 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~ 507 (719)
+.+..+.+..+.+ +..+++|+.|++++| .+..++. +..+++|+.|++++|.+..+++ +..+++|+.|+|++|.
T Consensus 26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 26 DNLKKKSVTDAVT--QNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHTTCSCTTSEEC--HHHHTTCCCCBCTTC-CCCCCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred HhccCCCcccccc--hhcCCCCCEEECcCC-CCCCChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence 3444444443322 334555555555555 4555442 4556666666666666666554 5566666666666666
Q ss_pred CCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCC
Q psy16110 508 LTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTY 587 (719)
Q Consensus 508 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 587 (719)
+..++ .+..+++|++|+|++|++.++ ..+..+++|+.|+|++|.++++ ..+ ..+++|+.|+|++|.+++
T Consensus 99 l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l-----~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 99 IKDLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVL-----SRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCCCT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGG-----GSCTTCSEEECCSSCCCC
T ss_pred CCCCh--hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhh-----cccCCCCEEECcCCcCCC
Confidence 66654 355666666666666666654 2356666777777777766654 122 234677777777777776
Q ss_pred cCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccC
Q psy16110 588 LFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDY 641 (719)
Q Consensus 588 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 641 (719)
..| +..+++|+.|+|++|+++.++ .+..+++|+.|+|++|++.+.+...+
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~~ 217 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQ 217 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCCCC
T ss_pred chh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCccccc
Confidence 655 667777777777777777764 36677777777777777766554333
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=5.8e-18 Score=170.52 Aligned_cols=172 Identities=22% Similarity=0.269 Sum_probs=113.1
Q ss_pred CCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEE
Q psy16110 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLD 550 (719)
Q Consensus 471 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 550 (719)
+.++..++++++.+++++ .+..+++|++|++++|.++.++ .+..+++|++|++++|+++++.+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344555566666666555 3455666777777777666665 35666777777777777766644 66677777777
Q ss_pred ccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCC
Q psy16110 551 LSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSN 630 (719)
Q Consensus 551 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 630 (719)
+++|++++++... . ++|++|++++|++++. ..+..+++|++|++++|++++++ .+..+++|+.|++++
T Consensus 92 L~~N~l~~l~~~~-------~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 92 VNRNRLKNLNGIP-------S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHG 159 (263)
T ss_dssp CCSSCCSCCTTCC-------C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTT
T ss_pred CCCCccCCcCccc-------c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCC
Confidence 7777766654321 1 5677777777777765 24667777777777777777764 366677777777777
Q ss_pred CCCcccCcccCCCCCCCCEEeCCCCcCCCCCc
Q psy16110 631 NQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE 662 (719)
Q Consensus 631 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 662 (719)
|+++++ ..+..+++|+.|++++|+++..+.
T Consensus 160 N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 160 NEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp SCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred CcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 777766 346677777777777777766644
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=3.2e-18 Score=172.46 Aligned_cols=176 Identities=25% Similarity=0.324 Sum_probs=151.5
Q ss_pred CCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCC
Q psy16110 495 LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSS 574 (719)
Q Consensus 495 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~ 574 (719)
+.++..++++++.+++++ .+..+++|++|++++|.++.+. .+..+++|++|++++|+++++++ + ..+++
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l-----~~l~~ 86 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--L-----KDLTK 86 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--G-----TTCSS
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--h-----ccCCC
Confidence 456778889999998887 3677899999999999998863 68889999999999999998775 3 34699
Q ss_pred CcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCC
Q psy16110 575 LEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN 654 (719)
Q Consensus 575 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 654 (719)
|++|++++|++++..+ +.. ++|++|++++|++++++ .+..+++|+.|++++|++++++ .+..+++|++|++++
T Consensus 87 L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 87 LEELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHG 159 (263)
T ss_dssp CCEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTT
T ss_pred CCEEECCCCccCCcCc--ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCC
Confidence 9999999999998743 333 99999999999999985 3889999999999999999985 588899999999999
Q ss_pred CcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhc
Q psy16110 655 NNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690 (719)
Q Consensus 655 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 690 (719)
|+++++ ..+..+++|+.|++++|+++..|...+.
T Consensus 160 N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~~~~~ 193 (263)
T 1xeu_A 160 NEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQP 193 (263)
T ss_dssp SCCCBC--TTSTTCCCCCEEEEEEEEEECCCEECCS
T ss_pred CcCcch--HHhccCCCCCEEeCCCCcccCCcccccc
Confidence 999998 4588999999999999999877754443
No 122
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.72 E-value=5.9e-16 Score=165.88 Aligned_cols=334 Identities=16% Similarity=0.299 Sum_probs=176.3
Q ss_pred ccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCC---CcccCcCccCCCccCcEEECCCC
Q psy16110 176 LRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQ---IKAIEEGILKGCDNLLELRMDHN 252 (719)
Q Consensus 176 i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n 252 (719)
++.|++.+|.+....|+.+.+..+ ++. |...+|.+|.+|+.+.++.|. ++.+...+|.+|.+|+.+.+..+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~-----Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~ 124 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTE-----IGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS 124 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCE-----ECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeE-----EhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc
Confidence 566777777533345777777654 222 445677778888888777653 66777777877877777776543
Q ss_pred cCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCC
Q psy16110 253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSD 332 (719)
Q Consensus 253 ~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 332 (719)
++.++..+|..+.+|+.+.+.. .+..+...+|..+..|+.+.+..+ ++.+...+|.. .+|+.+.+..+ ++.+...
T Consensus 125 -~~~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~ 199 (394)
T 4gt6_A 125 -VTEIDSEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTN 199 (394)
T ss_dssp -CSEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTT
T ss_pred -cceehhhhhhhhcccccccccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccc
Confidence 6677777777777777777753 356666677777777777777654 56666666654 45777766543 3333333
Q ss_pred ccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcc
Q psy16110 333 TFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQI 412 (719)
Q Consensus 333 ~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l 412 (719)
+|..+.+++...........++...+... ......... ......+..+.+. +.+
T Consensus 200 -----af~~c~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~---------~~~~~~~~~~~ip-~~v 253 (394)
T 4gt6_A 200 -----AFSECFALSTITSDSESYPAIDNVLYEKS-----------ANGDYALIR---------YPSQREDPAFKIP-NGV 253 (394)
T ss_dssp -----TTTTCTTCCEEEECCSSSCBSSSCEEEEC-----------TTSCEEEEE---------CCTTCCCSEEECC-TTE
T ss_pred -----hhhhccccceecccccccccccceeeccc-----------ccccccccc---------cccccccceEEcC-Ccc
Confidence 34556666666555544433322211110 000000000 0000112222221 122
Q ss_pred cccccCccC-CCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchh
Q psy16110 413 TTLSSSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQ 491 (719)
Q Consensus 413 ~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 491 (719)
+.+....+. +..|+.+.+.++ +..+...+|.++++|+.+.+.. .+..++..+|.++.+|+.+++..+ ++.+...+
T Consensus 254 ~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 329 (394)
T 4gt6_A 254 ARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILDDA 329 (394)
T ss_dssp EEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred eEcccceeeecccccEEecccc-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehHhH
Confidence 333333332 455555555432 3344445555566666666543 355555555666666666666532 55555555
Q ss_pred hcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCC
Q psy16110 492 FDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554 (719)
Q Consensus 492 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 554 (719)
|.++.+|+.+.+..+ ++.+...+|.+|++|+.+++.++.... .++..+.+|+.+.+..+
T Consensus 330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 655666666665433 555555556666666666555543221 13344445555554433
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=5.2e-17 Score=155.30 Aligned_cols=129 Identities=27% Similarity=0.307 Sum_probs=107.3
Q ss_pred CEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcC-cccCCCCccEEEcCCCCCCCcChhhhcCCCCCCE
Q psy16110 547 KRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPS-SFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE 625 (719)
Q Consensus 547 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 625 (719)
+++++++|.++.++...+ .++++|++++|.++++.+. .|..+++|++|++++|+++++++..|.++++|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~--------~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE 82 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CEEEcCCCCcCcCccCCC--------CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence 788888888888776443 4788888888888888664 4788888888888888888887777888888888
Q ss_pred EECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCC
Q psy16110 626 IDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEK 683 (719)
Q Consensus 626 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 683 (719)
|++++|+++++++..|.++++|++|++++|+++++++..|..+++|++|++++|++++
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 8888888888888778888888888888888888888788888888888888888874
No 124
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=3.9e-17 Score=156.99 Aligned_cols=150 Identities=21% Similarity=0.235 Sum_probs=84.9
Q ss_pred CCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCc
Q psy16110 520 LNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKL 599 (719)
Q Consensus 520 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 599 (719)
++|++|++++|.++.+. .+..+++|++|++++|.++.++ .+ ..+++|++|++++|.+++..+..+..+++|
T Consensus 44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l-----~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN--PI-----SGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG--GG-----TTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch--hh-----hcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 44555555555554332 3444555555555555444322 11 224566666666666665555566666666
Q ss_pred cEEEcCCCCCCCcChhhhcCCCCCCEEECCCCC-CcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCC
Q psy16110 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ-LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSF 678 (719)
Q Consensus 600 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 678 (719)
++|++++|+++...+..+..+++|++|++++|. ++.++ .+..+++|++|++++|++++++ .+..+++|++|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeC
Confidence 666666666666545556666666667776665 55553 3566666666666666666654 355566666666666
Q ss_pred CcCC
Q psy16110 679 NRLE 682 (719)
Q Consensus 679 N~l~ 682 (719)
|+++
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 6654
No 125
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=6.5e-17 Score=155.44 Aligned_cols=154 Identities=18% Similarity=0.279 Sum_probs=103.9
Q ss_pred cCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCC
Q psy16110 493 DELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT 572 (719)
Q Consensus 493 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l 572 (719)
..+++|++|++++|.++.++ .+..+++|++|++++|.++.. ..+..+++|++|++++|++++.....+. .+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLS-----GL 111 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCT-----TC
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhc-----CC
Confidence 34456666777777666665 256666777777777755443 2566677777777777776653333332 34
Q ss_pred CCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCC-CCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEe
Q psy16110 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNK-FNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLN 651 (719)
Q Consensus 573 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 651 (719)
++|++|++++|.+++..+..+..+++|++|++++|+ ++.++ .+..+++|++|++++|++++++ .+..+++|+.|+
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~ 187 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLY 187 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEE
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEE
Confidence 777777777777777666777778888888888887 76665 3677788888888888887765 467778888888
Q ss_pred CCCCcCCC
Q psy16110 652 LNNNNIDA 659 (719)
Q Consensus 652 Ls~N~l~~ 659 (719)
+++|++.+
T Consensus 188 l~~N~i~~ 195 (197)
T 4ezg_A 188 AFSQTIGG 195 (197)
T ss_dssp ECBC----
T ss_pred eeCcccCC
Confidence 88887654
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=3.7e-16 Score=147.31 Aligned_cols=133 Identities=23% Similarity=0.279 Sum_probs=107.0
Q ss_pred CCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCE
Q psy16110 546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE 625 (719)
Q Consensus 546 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 625 (719)
.+.+++++++++.++.... ++|++|++++|++++..+..|..+++|++|++++|+++.+++..+..+++|++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI 80 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEecCCCCccCCCCCC--------CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE
Confidence 5778888888887764432 57888888888888877777788888888888888888888777788888888
Q ss_pred EECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcCh
Q psy16110 626 IDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPE 686 (719)
Q Consensus 626 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~ 686 (719)
|++++|+++++++..+..+++|++|++++|+++++++..|..+++|++|++++|+++..++
T Consensus 81 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8888888888877777888888888888888888877777778888888888888875543
No 127
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.67 E-value=3.5e-15 Score=159.77 Aligned_cols=309 Identities=13% Similarity=0.265 Sum_probs=189.6
Q ss_pred CCcccccCCC-CCCEEECcCCCCcccCcCccCCCccCcEEECCCC---cCCcCCCCCCCCCCCCcEEEcCCCcCcccCCC
Q psy16110 209 FSTSEFHGLV-NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHN---RFTSIPSVSLNGPRALRILSMAYNRIGTLKAD 284 (719)
Q Consensus 209 ~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n---~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~ 284 (719)
|...+|.++. .|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ .++.|+..+|.++.+|+.+.+..+ ++.+...
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 3446788874 5999999764 88888899999999999998776 377888888888888888877654 7777778
Q ss_pred cccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCcccccccc
Q psy16110 285 SFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQ 364 (719)
Q Consensus 285 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~ 364 (719)
+|..+.+|+.+.+.. .+..+...+|..+.+|+.+.+..+ ++.++..+|. . .+|+.+.+..+ ++.+...+|
T Consensus 132 aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-----~-~~l~~i~ip~~-~~~i~~~af- 201 (394)
T 4gt6_A 132 AFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-----G-TALTQIHIPAK-VTRIGTNAF- 201 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-----T-CCCSEEEECTT-CCEECTTTT-
T ss_pred hhhhhcccccccccc-eeeeecccceecccccccccccce-eeEecccccc-----c-cceeEEEECCc-ccccccchh-
Confidence 888888899888864 466777788888888888888754 6667666443 2 46777777643 344444443
Q ss_pred CcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccc-cCccCCCCccEEEccCCCCCCcCcccc
Q psy16110 365 GTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS-SSALNYKLLTKLDLSHNNLKELEPTAF 443 (719)
Q Consensus 365 ~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 443 (719)
..+..++................+. .+...... ........+..+.+. +.++.+...+|
T Consensus 202 ----------~~c~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF 261 (394)
T 4gt6_A 202 ----------SECFALSTITSDSESYPAIDNVLYE---------KSANGDYALIRYPSQREDPAFKIP-NGVARIETHAF 261 (394)
T ss_dssp ----------TTCTTCCEEEECCSSSCBSSSCEEE---------ECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTT
T ss_pred ----------hhccccceecccccccccccceeec---------ccccccccccccccccccceEEcC-CcceEccccee
Confidence 3355666666555433332221000 00000000 000112233334432 23344445566
Q ss_pred cCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCC
Q psy16110 444 TNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523 (719)
Q Consensus 444 ~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 523 (719)
.++..|+.+.+.++ ...++..+|.++..|+.+.+. +.++.++..+|.++.+|+.+.+..+ ++.+...+|.+|.+|+
T Consensus 262 ~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 262 DSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eecccccEEecccc--cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 66666666666543 345555566666666666664 3455555566666666666666543 5555555666666666
Q ss_pred EEeCCCCccccccCCccCCCCCCCEEEccCC
Q psy16110 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554 (719)
Q Consensus 524 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 554 (719)
.+.+..+ ++.+...+|.++++|+.+++.++
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 6666432 45555555666666666665554
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=5.9e-16 Score=147.90 Aligned_cols=132 Identities=26% Similarity=0.365 Sum_probs=112.5
Q ss_pred CEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCC-cCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccE
Q psy16110 523 TYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGD-YFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKT 601 (719)
Q Consensus 523 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 601 (719)
+++++++|+++.+.. .+. .+|++|++++|+++.++.. .+. .+++|++|+|++|+++++.|.+|..+++|++
T Consensus 11 ~~l~~s~~~l~~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DIP--LHTTELLLNDNELGRISSDGLFG-----RLPHLVKLELKRNQLTGIEPNAFEGASHIQE 82 (192)
T ss_dssp TEEECTTSCCSSCCS-CCC--TTCSEEECCSCCCCSBCCSCSGG-----GCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CEEEcCCCCcCcCcc-CCC--CCCCEEECCCCcCCccCCccccc-----cCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence 789999999877643 332 3899999999999887764 343 3589999999999999998899999999999
Q ss_pred EEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCc
Q psy16110 602 LKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE 662 (719)
Q Consensus 602 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 662 (719)
|+|++|+++++++..|.++++|++|++++|+++++.+..+..+++|++|++++|++.+..+
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9999999999988888899999999999999999888889999999999999999987643
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=3e-19 Score=199.33 Aligned_cols=201 Identities=18% Similarity=0.210 Sum_probs=126.1
Q ss_pred CCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCc-------------CCCCChhhhcCCCCCCEEe-CCCCcccccc
Q psy16110 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNH-------------LTEIPEMMFKNLLNLTYLD-LSNNNIVNLR 536 (719)
Q Consensus 471 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-Ls~n~i~~~~ 536 (719)
++.|+.|++++|+++.+|. .++.+++|+.|++++|. ..+..+..+..+++|+.|+ ++.|.+.
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~-~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~--- 423 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD--- 423 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHH-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH---
T ss_pred CccceeccCChhhHHhhHH-HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc---
Confidence 3455555555555554432 34455555555554332 2233334445555555555 4443321
Q ss_pred CCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhh
Q psy16110 537 VGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKEL 616 (719)
Q Consensus 537 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 616 (719)
.|+.+.+.+|.++.++. ..|+.|++++|.++++ |. +..+++|++|+|++|+++.+|. .
T Consensus 424 --------~L~~l~l~~n~i~~l~~-----------~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~lp~-~ 481 (567)
T 1dce_A 424 --------DLRSKFLLENSVLKMEY-----------ADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRALPP-A 481 (567)
T ss_dssp --------HHHHHHHHHHHHHHHHH-----------TTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCCCCG-G
T ss_pred --------hhhhhhhhcccccccCc-----------cCceEEEecCCCCCCC-cC-ccccccCcEeecCcccccccch-h
Confidence 22333344444443321 2477788888877775 44 7778888888888888887765 4
Q ss_pred hcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCC-cccCCCCCCCcEEECCCCcCCCcChH---hhcCc
Q psy16110 617 ILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAIS-ETCFFNSSQLQIINLSFNRLEKLPER---LFNTF 692 (719)
Q Consensus 617 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~i~~~---~~~~l 692 (719)
+.++++|+.|+|++|.+++++ .+.++++|+.|+|++|++++++ |..|..+++|+.|+|++|+++.+|+. ++..+
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~l 559 (567)
T 1dce_A 482 LAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559 (567)
T ss_dssp GGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHC
T ss_pred hhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHC
Confidence 677888888888888888765 5777888888888888888875 66777788888888888888766542 34456
Q ss_pred ccc-EEec
Q psy16110 693 LYT-NYDM 699 (719)
Q Consensus 693 ~~L-~L~l 699 (719)
++| .|++
T Consensus 560 p~L~~L~l 567 (567)
T 1dce_A 560 PSVSSILT 567 (567)
T ss_dssp TTCSEEEC
T ss_pred cccCccCC
Confidence 777 6653
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=1.2e-15 Score=143.71 Aligned_cols=127 Identities=24% Similarity=0.359 Sum_probs=90.4
Q ss_pred CcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCC
Q psy16110 575 LEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN 654 (719)
Q Consensus 575 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 654 (719)
.+.++++++.++.+. ..+ .++|++|++++|+++++++..+..+++|++|++++|.++++++..|.++++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p-~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-TGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCC-TTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCC-CCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 456777777776653 222 35677777777777777766667777777777777777777766667777777777777
Q ss_pred CcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCce
Q psy16110 655 NNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLV 704 (719)
Q Consensus 655 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l 704 (719)
|+++++++..|..+++|++|++++|+++.+|+..|..+++| +|++++|++
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 77777776666777777777777777777777767777777 777777777
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=146.31 Aligned_cols=128 Identities=23% Similarity=0.313 Sum_probs=98.9
Q ss_pred CEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEE
Q psy16110 547 KRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEI 626 (719)
Q Consensus 547 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 626 (719)
+.+++++|.++.++.... ++|++|++++|.++.+ |..|..+++|++|++++|+++.+++..|.++++|++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--------~~l~~L~L~~n~i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--------RDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--------TTCCEEECCSSCCCSC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCCCcCCCCCC--------CCCCEEECCCCcCchh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE
Confidence 567777777776664432 5677888888887755 5677788888888888888888877777888888888
Q ss_pred ECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCC
Q psy16110 627 DLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEK 683 (719)
Q Consensus 627 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 683 (719)
+|++|+++++++..|.++++|++|+|++|+++.+++..|..+++|+.|++++|++.+
T Consensus 84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 888888888877778888888888888888888777777778888888888887763
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=4.9e-16 Score=145.11 Aligned_cols=134 Identities=26% Similarity=0.242 Sum_probs=67.9
Q ss_pred CCCCEEEccCCcCC--cccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCC
Q psy16110 544 PSMKRLDLSFNKLT--TFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLS 621 (719)
Q Consensus 544 ~~L~~L~L~~n~l~--~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 621 (719)
++|++|++++|.++ .++.. + ..+++|++|++++|.+++. ..+..+++|++|++++|+++...+..+..++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~-----~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-T-----AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-C-----GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCEEECCCCCCChhhHHHH-H-----HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 45555555555554 33221 1 1235555555555555554 4455555555555555555553333344455
Q ss_pred CCCEEECCCCCCcccCc-ccCCCCCCCCEEeCCCCcCCCCCc---ccCCCCCCCcEEECCCCcCCCcC
Q psy16110 622 YLQEIDLSNNQLKTIDD-YDYGYLPRLRKLNLNNNNIDAISE---TCFFNSSQLQIINLSFNRLEKLP 685 (719)
Q Consensus 622 ~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~i~ 685 (719)
+|++|++++|.+++++. ..+..+++|++|++++|+++++++ ..+..+++|++|++++|.+..+|
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 55555555555555432 344555555555555555555544 34445555555555555555444
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=9.4e-19 Score=195.30 Aligned_cols=216 Identities=20% Similarity=0.179 Sum_probs=144.8
Q ss_pred CCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccE
Q psy16110 421 NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKY 500 (719)
Q Consensus 421 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 500 (719)
..+.|+.|++++|.+..+ |..++.+++|+.|++++|..+..++. . +..+...+..+..++.+++|+.
T Consensus 347 ~~~~L~~L~Ls~n~L~~L-p~~i~~l~~L~~L~l~~n~~l~~l~~-------l-----l~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVL-QSELESCKELQELEPENKWCLLTIIL-------L-----MRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp TTTTSSSCCCCHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHH-------H-----HHHHCTGGGHHHHHHHHHHHHH
T ss_pred cCccceeccCChhhHHhh-HHHHHHHHHHHHhccccchhhhhHHH-------H-----HHhcccccCCHHHHHHHHhccc
Confidence 466777788887777655 45567777777777765521111110 0 0111234445566777788888
Q ss_pred EE-ccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEE
Q psy16110 501 LC-LAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELN 579 (719)
Q Consensus 501 L~-L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~ 579 (719)
|+ ++.|.+. .|+.+.+++|.++.+.+. .|+.|+|++|.+++++. +. .+++|+.|+
T Consensus 414 L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~~------~L~~L~Ls~n~l~~lp~--~~-----~l~~L~~L~ 469 (567)
T 1dce_A 414 VDPMRAAYLD-----------DLRSKFLLENSVLKMEYA------DVRVLHLAHKDLTVLCH--LE-----QLLLVTHLD 469 (567)
T ss_dssp HCGGGHHHHH-----------HHHHHHHHHHHHHHHHHT------TCSEEECTTSCCSSCCC--GG-----GGTTCCEEE
T ss_pred Ccchhhcccc-----------hhhhhhhhcccccccCcc------CceEEEecCCCCCCCcC--cc-----ccccCcEee
Confidence 87 5555432 334445556666655332 37778888887777653 32 357888888
Q ss_pred CcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccC-cccCCCCCCCCEEeCCCCcCC
Q psy16110 580 LNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTID-DYDYGYLPRLRKLNLNNNNID 658 (719)
Q Consensus 580 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~N~l~ 658 (719)
|++|.++.+ |..++.+++|++|+|++|+++++| .+.++++|++|+|++|+++++. +..+..+++|+.|+|++|+++
T Consensus 470 Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 470 LSHNRLRAL-PPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred cCccccccc-chhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 888888844 677888888888888888888876 4788888888888888888875 667888888888888888888
Q ss_pred CCCccc---CCCCCCCcEEEC
Q psy16110 659 AISETC---FFNSSQLQIINL 676 (719)
Q Consensus 659 ~~~~~~---~~~l~~L~~L~L 676 (719)
+.++.. +..+++|+.||+
T Consensus 547 ~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 547 QEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GSSSCTTHHHHHCTTCSEEEC
T ss_pred CCccHHHHHHHHCcccCccCC
Confidence 876532 233678888864
No 134
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.6e-15 Score=141.60 Aligned_cols=137 Identities=20% Similarity=0.208 Sum_probs=111.1
Q ss_pred CCCCCEEeCCCCccc-cccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCC
Q psy16110 519 LLNLTYLDLSNNNIV-NLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHS 597 (719)
Q Consensus 519 l~~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 597 (719)
.++|++|++++|.++ +..|..+..+++|++|++++|.++.+ ..+ ..+++|++|++++|.+++..|..+..++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL-----PKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC-----CCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh-----ccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 467888888888887 44466677888888888888888765 222 3468899999999998887677777789
Q ss_pred CccEEEcCCCCCCCcCh-hhhcCCCCCCEEECCCCCCcccCc---ccCCCCCCCCEEeCCCCcCCCCCc
Q psy16110 598 KLKTLKLAFNKFNYFPK-ELILGLSYLQEIDLSNNQLKTIDD---YDYGYLPRLRKLNLNNNNIDAISE 662 (719)
Q Consensus 598 ~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~L~~L~Ls~N~l~~~~~ 662 (719)
+|++|++++|+++.++. ..+..+++|++|++++|+++++++ ..+..+++|++|++++|.+.+++.
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 99999999999988764 568889999999999999998876 568889999999999999887764
No 135
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.59 E-value=1.2e-13 Score=147.08 Aligned_cols=138 Identities=16% Similarity=0.269 Sum_probs=88.9
Q ss_pred CCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEE
Q psy16110 422 YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYL 501 (719)
Q Consensus 422 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L 501 (719)
...|+.+.+..+ +..+...+|.++..|+.+.+..+ +..++..+|.++.+|+.+.+.. .+..++..+|.++.+|+.+
T Consensus 216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEE
T ss_pred ccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc-cceeccccccccccccccc
Confidence 455566655432 44555556666667777766553 5566666677777777777654 3566666667777777777
Q ss_pred EccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCC
Q psy16110 502 CLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFN 565 (719)
Q Consensus 502 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 565 (719)
.+.++.++.++..+|.+|.+|+.+.+..+ ++.+...+|.++++|+.+.+..+ ++.+....|.
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~ 353 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFE 353 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence 77766677777777777777777777543 66666667777777777777543 5555555553
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.3e-15 Score=139.05 Aligned_cols=126 Identities=20% Similarity=0.181 Sum_probs=80.1
Q ss_pred CCCcEEECcCCCCC-CcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEe
Q psy16110 573 SSLEELNLNNNELT-YLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLN 651 (719)
Q Consensus 573 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 651 (719)
++|++|++++|.++ +..|..+..+++|++|++++|+++.+ ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 44455566666666666666666666 3456666677777777666664444455566677777
Q ss_pred CCCCcCCCCC-cccCCCCCCCcEEECCCCcCCCcCh---HhhcCcccc-EEecC
Q psy16110 652 LNNNNIDAIS-ETCFFNSSQLQIINLSFNRLEKLPE---RLFNTFLYT-NYDMA 700 (719)
Q Consensus 652 Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~i~~---~~~~~l~~L-~L~l~ 700 (719)
+++|++++++ +..+..+++|++|++++|+++.+++ ..|..+++| +|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777766653 2456666777777777777766665 556666777 66665
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=4.7e-16 Score=178.99 Aligned_cols=119 Identities=30% Similarity=0.302 Sum_probs=57.1
Q ss_pred CCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCC
Q psy16110 466 GGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS 545 (719)
Q Consensus 466 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~ 545 (719)
..|..++.|+.|+|++|.+..++...+ .+++|++|+|++|.++.+|. .|..+++|++|+|++|.++.+ |..+..+++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~ 294 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTSL-PAELGSCFQ 294 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCG-GGGGGTTCCEEECTTSCCSSC-CSSGGGGTT
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccCh-hhhCCCCCCEEeCcCCcCCcc-ChhhcCCCC
Confidence 334455555555555555555544333 45555555555555554443 244555555555555555533 444555555
Q ss_pred CCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcc
Q psy16110 546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSF 593 (719)
Q Consensus 546 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 593 (719)
|++|+|++|.++.++.. +. .+++|++|+|++|.+++.+|..+
T Consensus 295 L~~L~L~~N~l~~lp~~-~~-----~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWE-FG-----NLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CSEEECCSSCCCCCCSS-TT-----SCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCEEECCCCCCCccChh-hh-----cCCCccEEeCCCCccCCCChHHH
Confidence 55555555555444332 21 23455555555555554444333
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=4e-16 Score=179.57 Aligned_cols=151 Identities=24% Similarity=0.194 Sum_probs=69.1
Q ss_pred hhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcc
Q psy16110 514 MMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSF 593 (719)
Q Consensus 514 ~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 593 (719)
..|..++.|+.|+|++|.+..+. ..+..+++|++|+|++|.++.++..+ . .+++|++|+|++|.++.+ |..|
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~lp~~~-~-----~l~~L~~L~Ls~N~l~~l-p~~~ 289 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLTELPAEI-K-----NLSNLRVLDLSHNRLTSL-PAEL 289 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCSCCCGGG-G-----GGTTCCEEECTTSCCSSC-CSSG
T ss_pred hhhccCCCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCcccChhh-h-----CCCCCCEEeCcCCcCCcc-Chhh
Confidence 33445555555555555555332 22234555555555555555443221 1 235555555555555533 5555
Q ss_pred cCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCC-CCCEEeCCCCcCCCCCcccCCCCCCCc
Q psy16110 594 TIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLP-RLRKLNLNNNNIDAISETCFFNSSQLQ 672 (719)
Q Consensus 594 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 672 (719)
..+++|++|+|++|.++.+|.. |..+++|+.|+|++|.+++.++..+..+. .+..+++++|.+++.+| ..|+
T Consensus 290 ~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~ 362 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERR 362 (727)
T ss_dssp GGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC--
T ss_pred cCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccc
Confidence 5556666666666655555544 55556666666666666554443333221 11234555555555443 2444
Q ss_pred EEECCCC
Q psy16110 673 IINLSFN 679 (719)
Q Consensus 673 ~L~Ls~N 679 (719)
.|++++|
T Consensus 363 ~l~l~~n 369 (727)
T 4b8c_D 363 FIEINTD 369 (727)
T ss_dssp -------
T ss_pred eeEeecc
Confidence 5555554
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=1.1e-14 Score=136.02 Aligned_cols=109 Identities=25% Similarity=0.291 Sum_probs=83.6
Q ss_pred CCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCC
Q psy16110 574 SLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLN 653 (719)
Q Consensus 574 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 653 (719)
+.+.+++++|.++.+ |..+ .++|++|+|++|+++++++..|.++++|++|+|++|+++++++..|.++++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 356788888888776 4333 3777888888888888777777778888888888888888777777778888888888
Q ss_pred CCcCCCCCcccCCCCCCCcEEECCCCcCCCcC
Q psy16110 654 NNNIDAISETCFFNSSQLQIINLSFNRLEKLP 685 (719)
Q Consensus 654 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 685 (719)
+|+++++++..|..+++|++|+|++|+++..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 88888877777777788888888888777554
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=4.2e-15 Score=139.85 Aligned_cols=136 Identities=21% Similarity=0.287 Sum_probs=90.9
Q ss_pred ccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhc
Q psy16110 539 SLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL 618 (719)
Q Consensus 539 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 618 (719)
.+..+++|++|++++|+++.++. ... ..++|++|++++|.+++. ..+..+++|++|++++|+++.+++..+.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~-----~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGA-----TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGG-----GTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhh-----cCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhh
Confidence 34566777788888777776532 111 124777777777777765 4567777777777777777777666566
Q ss_pred CCCCCCEEECCCCCCcccCc-ccCCCCCCCCEEeCCCCcCCCCCcc---cCCCCCCCcEEECCCCcCC
Q psy16110 619 GLSYLQEIDLSNNQLKTIDD-YDYGYLPRLRKLNLNNNNIDAISET---CFFNSSQLQIINLSFNRLE 682 (719)
Q Consensus 619 ~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~ 682 (719)
.+++|++|++++|.++.++. ..+..+++|+.|++++|+++.+++. .+..+++|+.||+++|...
T Consensus 86 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777777777777766554 2466677777777777777666543 3556677777777777654
No 141
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=7.3e-15 Score=134.12 Aligned_cols=111 Identities=21% Similarity=0.212 Sum_probs=50.6
Q ss_pred CCCCEEeCCCCccc-cccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCC
Q psy16110 520 LNLTYLDLSNNNIV-NLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSK 598 (719)
Q Consensus 520 ~~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 598 (719)
++|++|++++|.++ +..|..+..+++|++|++++|.++++ ..+ ..+++|++|++++|.+++..|..+..+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~-----~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANL-----PKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTC-----CCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhh-----hcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 45556666666555 33344455555555555555555443 111 22344455555544444433433334444
Q ss_pred ccEEEcCCCCCCCcC-hhhhcCCCCCCEEECCCCCCcccC
Q psy16110 599 LKTLKLAFNKFNYFP-KELILGLSYLQEIDLSNNQLKTID 637 (719)
Q Consensus 599 L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~ 637 (719)
|++|++++|++++++ +..+..+++|++|++++|++++++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 444444444444432 123344444444444444444433
No 142
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.54 E-value=5e-13 Score=142.33 Aligned_cols=317 Identities=17% Similarity=0.221 Sum_probs=191.2
Q ss_pred cccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCcc
Q psy16110 213 EFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWL 292 (719)
Q Consensus 213 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 292 (719)
.+....+|+.+.+.. .++.|+..+|.+|.+|+.+.+..+ ++.|+..+|.++ +|+.+.+.. .++.+...+|... +|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccC-Cc
Confidence 355667788888865 377888888888888888888644 777777777776 566666653 3666666666554 57
Q ss_pred CEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCccccccc
Q psy16110 293 ERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFS 372 (719)
Q Consensus 293 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~ 372 (719)
+.+.+..+ +..+...+|.+. +|+.+.+.. .++.+... +|..+.+++.+.+..+....+....+
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~-----~f~~~~~l~~~~~~~~~~~~~~~~~~--------- 178 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDG-----IGYKAENLEKIEVSSNNKNYVAENYV--------- 178 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSC-----TTTTCTTCCEEEECTTCSSEEEETTE---------
T ss_pred ccccCCCc-cccccccccccc-eeeeeeccc-eeeccccc-----hhcccccccccccccccceeecccce---------
Confidence 77777553 444555555544 344444332 23333333 23344555555444332211110000
Q ss_pred ccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEE
Q psy16110 373 FFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHL 452 (719)
Q Consensus 373 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 452 (719)
.. +..............+..+.+.. ....+....+..+.+|+.+
T Consensus 179 -------------------------~~----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~f~~~~~l~~i 222 (379)
T 4h09_A 179 -------------------------LY----------NKNKTILESYPAAKTGTEFTIPS-TVKTVTAYGFSYGKNLKKI 222 (379)
T ss_dssp -------------------------EE----------ETTSSEEEECCTTCCCSEEECCT-TCCEECTTTTTTCSSCSEE
T ss_pred -------------------------ec----------ccccceecccccccccccccccc-ceeEEeeccccccccccee
Confidence 00 00000000111233344444433 2233444556667777777
Q ss_pred eCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcc
Q psy16110 453 NLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNI 532 (719)
Q Consensus 453 ~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i 532 (719)
.+..+ +..++...|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +..++..+|.+|++|+.+.+.++.+
T Consensus 223 ~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i 298 (379)
T 4h09_A 223 TITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAI 298 (379)
T ss_dssp ECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTC
T ss_pred eeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccccccc
Confidence 77653 56666677777778888877665 66777777777778888877643 6667777777888888888877777
Q ss_pred ccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCC
Q psy16110 533 VNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSK 598 (719)
Q Consensus 533 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 598 (719)
+.+...+|.++.+|+.+.|..+ ++.++...|. +|++|+.+.+..+ ++.+...+|.++..
T Consensus 299 ~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~-----~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 299 ETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFK-----NCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-----TCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred ceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhh-----CCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 7777777888888888887643 5656555553 4677777777643 66666677776643
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=2.4e-14 Score=134.16 Aligned_cols=109 Identities=24% Similarity=0.275 Sum_probs=92.4
Q ss_pred CcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCC
Q psy16110 575 LEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN 654 (719)
Q Consensus 575 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 654 (719)
-+.+++++|.++.+ |..+. ++|++|++++|+++++++..|.++++|++|+|++|+++++++..|.++++|++|+|++
T Consensus 14 ~~~l~~~~n~l~~i-P~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASV-PAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSC-CSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCcc-CCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 46889999988776 44443 7889999999999988888888889999999999999988887788889999999999
Q ss_pred CcCCCCCcccCCCCCCCcEEECCCCcCCCcCh
Q psy16110 655 NNIDAISETCFFNSSQLQIINLSFNRLEKLPE 686 (719)
Q Consensus 655 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~ 686 (719)
|+|+++++..|..+++|++|+|++|++...+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99998888778888999999999998887664
No 144
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=7.5e-15 Score=138.16 Aligned_cols=129 Identities=15% Similarity=0.145 Sum_probs=57.3
Q ss_pred CCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeC
Q psy16110 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNL 652 (719)
Q Consensus 573 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 652 (719)
++|++|++++|.++.+ +......++|++|++++|+++++ ..+..+++|++|++++|.++++++..+..+++|++|++
T Consensus 19 ~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 4444444544444433 22111222444455544444444 22444444445555444444444333344444444555
Q ss_pred CCCcCCCCCc-ccCCCCCCCcEEECCCCcCCCcChH---hhcCcccc-EEecCCCce
Q psy16110 653 NNNNIDAISE-TCFFNSSQLQIINLSFNRLEKLPER---LFNTFLYT-NYDMAPNLV 704 (719)
Q Consensus 653 s~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~~---~~~~l~~L-~L~l~~N~l 704 (719)
++|+++.+++ ..+..+++|+.|++++|+++.+|.. ++..+++| .+++++|+.
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 4444444332 2344444444455544444444433 34444444 444444444
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=2.3e-13 Score=126.99 Aligned_cols=108 Identities=27% Similarity=0.330 Sum_probs=79.8
Q ss_pred CCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCE
Q psy16110 546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE 625 (719)
Q Consensus 546 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 625 (719)
.+++++++|.++.++.... ++|++|+|++|+++++.|..|..+++|++|+|++|+++.+++..|..+++|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--------~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEeCCCCcCccCccCC--------CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 4677777777777665432 56777777777777777777777777777777777777777777777777777
Q ss_pred EECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCC
Q psy16110 626 IDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAIS 661 (719)
Q Consensus 626 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 661 (719)
|+|++|+++++++..|.++++|++|+|++|++....
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 777777777777766777777777777777776654
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=3.2e-13 Score=126.41 Aligned_cols=109 Identities=27% Similarity=0.337 Sum_probs=87.6
Q ss_pred CCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCE
Q psy16110 546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE 625 (719)
Q Consensus 546 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 625 (719)
-+.+++++|+++.++.... ++|++|+|++|+++++.|..|..+++|++|+|++|+++++++..|..+++|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CcEEEeCCCCCCccCCCcC--------CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence 3678888888887765442 67888888888888887888888888888888888888888877788888888
Q ss_pred EECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCc
Q psy16110 626 IDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE 662 (719)
Q Consensus 626 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 662 (719)
|+|++|+++++++..|..+++|++|+|++|++...+.
T Consensus 86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred EECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 8888888888887678888888888888888876653
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.38 E-value=7.6e-13 Score=139.08 Aligned_cols=106 Identities=23% Similarity=0.266 Sum_probs=81.0
Q ss_pred EEECcCC-CCCCcCcCcccCCCCccEEEcCC-CCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCC
Q psy16110 577 ELNLNNN-ELTYLFPSSFTIHSKLKTLKLAF-NKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN 654 (719)
Q Consensus 577 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 654 (719)
.++++++ .++++ |. +..+++|++|+|++ |+++.+++..|.++++|+.|+|++|+|+++++..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677777 77775 55 77778888888875 888888877778888888888888888887777777788888888888
Q ss_pred CcCCCCCcccCCCCCCCcEEECCCCcCCCcC
Q psy16110 655 NNIDAISETCFFNSSQLQIINLSFNRLEKLP 685 (719)
Q Consensus 655 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 685 (719)
|+|+++++..|..++ |+.|+|++|++.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCC
Confidence 888877777666555 888888888777544
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=1e-15 Score=147.10 Aligned_cols=41 Identities=32% Similarity=0.415 Sum_probs=19.8
Q ss_pred hcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCc
Q psy16110 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558 (719)
Q Consensus 516 ~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 558 (719)
+..+++|++|++++|+++++ | .+..+++|++|++++|.++.
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~ 84 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKK 84 (198)
T ss_dssp HHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECS
T ss_pred HhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCccc
Confidence 44455555555555555443 2 44444455555555544443
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=5.6e-14 Score=148.34 Aligned_cols=116 Identities=18% Similarity=0.196 Sum_probs=56.6
Q ss_pred CCcEEECcCCCCCCcCcCcc-----cCCCCccEEEcCCCCCCCcCh----hhhcCCCCCCEEECCCCCCcccC----ccc
Q psy16110 574 SLEELNLNNNELTYLFPSSF-----TIHSKLKTLKLAFNKFNYFPK----ELILGLSYLQEIDLSNNQLKTID----DYD 640 (719)
Q Consensus 574 ~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~~~~----~~~ 640 (719)
+|++|+|++|.++......+ ...++|++|+|++|.++.... .++..+++|++|+|++|.+++.. ...
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 45555555555543322222 124455555555555544222 12244555666666666655322 223
Q ss_pred CCCCCCCCEEeCCCCcCCCCCc----ccCCCCCCCcEEECCCCcCCCcChHhh
Q psy16110 641 YGYLPRLRKLNLNNNNIDAISE----TCFFNSSQLQIINLSFNRLEKLPERLF 689 (719)
Q Consensus 641 l~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 689 (719)
+...++|+.|+|++|+|+.... ..+..+++|++|||++|.|+......+
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 4445566666666666654322 122334566666666666654443333
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=1.1e-14 Score=139.90 Aligned_cols=152 Identities=17% Similarity=0.191 Sum_probs=92.6
Q ss_pred CCCCCEEeCCCCccccccCC------ccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCc
Q psy16110 519 LLNLTYLDLSNNNIVNLRVG------SLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSS 592 (719)
Q Consensus 519 l~~L~~L~Ls~n~i~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 592 (719)
...++.++++.+.+.+..+. .+..+++|++|++++|.++.++ .+ ..+++|++|++++|.++.+ |..
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~-----~~l~~L~~L~l~~n~l~~l-~~~ 88 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SL-----SGMENLRILSLGRNLIKKI-ENL 88 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CH-----HHHTTCCEEEEEEEEECSC-SSH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--cc-----ccCCCCCEEECCCCCcccc-cch
Confidence 34445555555555444343 5666667777777777666644 22 2346677777777776644 455
Q ss_pred ccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCc-ccCCCCCCCCEEeCCCCcCCCCCcc--------
Q psy16110 593 FTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDD-YDYGYLPRLRKLNLNNNNIDAISET-------- 663 (719)
Q Consensus 593 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~-------- 663 (719)
+..+++|++|++++|++++++ .+..+++|++|++++|++++++. ..+..+++|++|++++|++++.++.
T Consensus 89 ~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 166 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166 (198)
T ss_dssp HHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHH
T ss_pred hhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHH
Confidence 555667777777777776654 35666677777777777765543 3466677777777777776655432
Q ss_pred --cCCCCCCCcEEECCCCcCC
Q psy16110 664 --CFFNSSQLQIINLSFNRLE 682 (719)
Q Consensus 664 --~~~~l~~L~~L~Ls~N~l~ 682 (719)
.+..+++|+.|| +|.++
T Consensus 167 ~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 167 IEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHhCCCcEEEC--CcccC
Confidence 255667777776 55554
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=9.7e-12 Score=130.58 Aligned_cols=105 Identities=19% Similarity=0.234 Sum_probs=71.6
Q ss_pred EEEccCC-cCCcccCCcCCCCCCCCCCCCcEEECcC-CCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCE
Q psy16110 548 RLDLSFN-KLTTFKGDYFNTKSKPNTSSLEELNLNN-NELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE 625 (719)
Q Consensus 548 ~L~L~~n-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 625 (719)
.++++++ .++.+|. +. .+++|++|+|++ |.++++.+..|..+++|++|+|++|+|+++++..|.++++|+.
T Consensus 12 ~v~~~~~n~l~~ip~--l~-----~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 84 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LP-----GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (347)
T ss_dssp CEECCSSCCCTTTTT--SC-----SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred EEEcCCCCCCCccCC--CC-----CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE
Confidence 4566666 6666654 32 236677777775 7777776667777777777777777777777766777777777
Q ss_pred EECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCC
Q psy16110 626 IDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAI 660 (719)
Q Consensus 626 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 660 (719)
|+|++|+|+++++..|..++ |+.|+|++|++...
T Consensus 85 L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 85 LNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp EECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred EeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 77777777777666565555 77777777777654
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=5.2e-13 Score=140.91 Aligned_cols=134 Identities=16% Similarity=0.115 Sum_probs=102.3
Q ss_pred CCCcEEECcCCCCCCcCcCcc-cCCCCccEEEcCCCCCCCcChhhh-----cCCCCCCEEECCCCCCcccCc----ccCC
Q psy16110 573 SSLEELNLNNNELTYLFPSSF-TIHSKLKTLKLAFNKFNYFPKELI-----LGLSYLQEIDLSNNQLKTIDD----YDYG 642 (719)
Q Consensus 573 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~----~~l~ 642 (719)
++|++|+|++|.++......+ ..+++|++|+|++|.++......+ ...++|++|+|++|.++.... ..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 578888888887765433233 245789999999999987555444 457899999999999986332 2346
Q ss_pred CCCCCCEEeCCCCcCCCCC----cccCCCCCCCcEEECCCCcCCCcChH----hhcCcccc-EEecCCCceee
Q psy16110 643 YLPRLRKLNLNNNNIDAIS----ETCFFNSSQLQIINLSFNRLEKLPER----LFNTFLYT-NYDMAPNLVFQ 706 (719)
Q Consensus 643 ~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~i~~~----~~~~l~~L-~L~l~~N~l~~ 706 (719)
.+++|++|+|++|++++.. ...+..+++|++|+|++|.++..... .+..++.| +|+|++|++..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 7889999999999998643 34566778999999999999865433 34567899 99999999965
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=8.9e-09 Score=107.55 Aligned_cols=84 Identities=13% Similarity=0.235 Sum_probs=52.2
Q ss_pred CCCCCCEEECCCCCCcccCcccC---CCCCCCCEEeCCCCcCCCCCc----ccCCCCCCCcEEECCCCcCCCcChHhhcC
Q psy16110 619 GLSYLQEIDLSNNQLKTIDDYDY---GYLPRLRKLNLNNNNIDAISE----TCFFNSSQLQIINLSFNRLEKLPERLFNT 691 (719)
Q Consensus 619 ~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 691 (719)
.+++|++|++++|.+.+.....+ ..+++|++|+|+.|.+.+... ..+.++++|+.|+|++|.++..-...+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 46778888888877764221111 246788888888888776422 22234678888888888776433333332
Q ss_pred cccc-EEecCCCc
Q psy16110 692 FLYT-NYDMAPNL 703 (719)
Q Consensus 692 l~~L-~L~l~~N~ 703 (719)
.- . .+++++++
T Consensus 330 al-g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL-PMKIDVSDSQ 341 (362)
T ss_dssp HC-CSEEECCSBC
T ss_pred Hc-CCEEEecCCc
Confidence 10 3 78888877
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.55 E-value=2.6e-08 Score=103.97 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=29.2
Q ss_pred hhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCcc--CCCCCCCEEEcc
Q psy16110 491 QFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSL--YGLPSMKRLDLS 552 (719)
Q Consensus 491 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l--~~l~~L~~L~L~ 552 (719)
.+..+++|+.|++++|.-..++. +. +++|++|++..|.+.......+ ..+++|+.|+|+
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 34455666666666652112222 22 4566666666665544322222 245666666654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=6.1e-08 Score=91.24 Aligned_cols=89 Identities=10% Similarity=0.086 Sum_probs=43.4
Q ss_pred cCCCCccEEEcCCCCCCCcC----hhhhcCCCCCCEEECCCCCCcccC----cccCCCCCCCCEEeC--CCCcCCCCC--
Q psy16110 594 TIHSKLKTLKLAFNKFNYFP----KELILGLSYLQEIDLSNNQLKTID----DYDYGYLPRLRKLNL--NNNNIDAIS-- 661 (719)
Q Consensus 594 ~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L--s~N~l~~~~-- 661 (719)
...++|++|+|++|.+.... ..++...++|++|+|++|.|+... ...+...+.|++|+| ++|.+....
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 33445555555555544311 122333455666666666555321 223444455666666 556555431
Q ss_pred --cccCCCCCCCcEEECCCCcCC
Q psy16110 662 --ETCFFNSSQLQIINLSFNRLE 682 (719)
Q Consensus 662 --~~~~~~l~~L~~L~Ls~N~l~ 682 (719)
...+...++|++|+|++|.++
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 122334456666666666554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.35 E-value=1.1e-07 Score=89.41 Aligned_cols=116 Identities=9% Similarity=0.020 Sum_probs=88.5
Q ss_pred cCcccCCCCccEEEcCCC-CCCCc----ChhhhcCCCCCCEEECCCCCCcccC----cccCCCCCCCCEEeCCCCcCCCC
Q psy16110 590 PSSFTIHSKLKTLKLAFN-KFNYF----PKELILGLSYLQEIDLSNNQLKTID----DYDYGYLPRLRKLNLNNNNIDAI 660 (719)
Q Consensus 590 ~~~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~N~l~~~ 660 (719)
...+...++|++|+|++| .+... -...+...++|++|+|++|.+.... ...+...+.|++|+|++|+|...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345667788889999888 77752 2344677899999999999998532 22345568999999999999874
Q ss_pred ----CcccCCCCCCCcEEEC--CCCcCCCcC----hHhhcCcccc-EEecCCCcee
Q psy16110 661 ----SETCFFNSSQLQIINL--SFNRLEKLP----ERLFNTFLYT-NYDMAPNLVF 705 (719)
Q Consensus 661 ----~~~~~~~l~~L~~L~L--s~N~l~~i~----~~~~~~l~~L-~L~l~~N~l~ 705 (719)
....+...++|++|+| ++|.++.-. ...+...+.| +|+|++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2345677889999999 889998532 2345667899 9999999884
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=1.1e-06 Score=80.56 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=17.8
Q ss_pred CCCEEeCCCCc-CCCCCcccCCCCCCCcEEECCCC
Q psy16110 646 RLRKLNLNNNN-IDAISETCFFNSSQLQIINLSFN 679 (719)
Q Consensus 646 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N 679 (719)
+|++|+|++|. +++..-..+..+++|++|+|++|
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 45555555553 44433333445566666666665
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.01 E-value=7e-06 Score=71.78 Aligned_cols=59 Identities=19% Similarity=0.380 Sum_probs=49.5
Q ss_pred CEEeCCCCcCC--CCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeeeccCCCccccC
Q psy16110 648 RKLNLNNNNID--AISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHLSGHRCECA 717 (719)
Q Consensus 648 ~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~~~~~C~c~ 717 (719)
..++.++++++ .++.. + .++|++|+|++|+|+.++...|..++.| .|+|++||+ .|+|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~-l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~--------~CdC~ 72 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA-F--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW--------RCDCR 72 (130)
T ss_dssp TEEECCSSCCCTTTSCSC-C--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC--------BCSGG
T ss_pred CEEEeCCCCCccccCCCC-C--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe--------eccCc
Confidence 37888888887 66643 3 2579999999999999999999999999 999999999 89996
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.99 E-value=5.4e-07 Score=89.08 Aligned_cols=80 Identities=26% Similarity=0.284 Sum_probs=47.5
Q ss_pred cCCCCCCEEECCCCCCcccCc--ccCCCCCCCCEEeCCCCcCCCCCc-ccCCCCCCCcEEECCCCcCCC-cC------hH
Q psy16110 618 LGLSYLQEIDLSNNQLKTIDD--YDYGYLPRLRKLNLNNNNIDAISE-TCFFNSSQLQIINLSFNRLEK-LP------ER 687 (719)
Q Consensus 618 ~~l~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~-i~------~~ 687 (719)
.++++|++|+|++|+++++.. ..+..+++|+.|+|++|+|+++.. ..+..+ +|++|+|++|++.. +| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 345677777777777766442 234466777777777777776521 223333 77777777777753 33 23
Q ss_pred hhcCcccc-EEe
Q psy16110 688 LFNTFLYT-NYD 698 (719)
Q Consensus 688 ~~~~l~~L-~L~ 698 (719)
++..+++| .||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 45566666 654
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=1.6e-06 Score=79.43 Aligned_cols=87 Identities=8% Similarity=0.039 Sum_probs=62.0
Q ss_pred CCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCC-CCCcChhhhcCC----CCCCEEECCCCC-CcccCcccCCCCCC
Q psy16110 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNK-FNYFPKELILGL----SYLQEIDLSNNQ-LKTIDDYDYGYLPR 646 (719)
Q Consensus 573 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~l~~l~~ 646 (719)
..|++||+++|.++...-..+..+++|++|+|++|. ++...-..+..+ ++|++|+|++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 458888888888777666667788888888888884 665444445543 468888888874 77544345667888
Q ss_pred CCEEeCCCCc-CCC
Q psy16110 647 LRKLNLNNNN-IDA 659 (719)
Q Consensus 647 L~~L~Ls~N~-l~~ 659 (719)
|++|++++|. ++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 8888888875 443
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.89 E-value=9e-06 Score=80.32 Aligned_cols=62 Identities=35% Similarity=0.374 Sum_probs=30.5
Q ss_pred CCCcEEECcCCCCCCc--CcCcccCCCCccEEEcCCCCCCCcCh-hhhcCCCCCCEEECCCCCCcc
Q psy16110 573 SSLEELNLNNNELTYL--FPSSFTIHSKLKTLKLAFNKFNYFPK-ELILGLSYLQEIDLSNNQLKT 635 (719)
Q Consensus 573 ~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~ 635 (719)
+.|++|+|++|.++++ ++..+..+++|+.|+|++|+++++.. ..+..+ +|++|+|++|.+.+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 4555555555555543 22334455555555555555555411 112222 55666666665553
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.52 E-value=0.00012 Score=63.89 Aligned_cols=66 Identities=26% Similarity=0.484 Sum_probs=45.2
Q ss_pred CCcccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCccc
Q psy16110 104 FPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKL 183 (719)
Q Consensus 104 ~~~~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~ 183 (719)
||..|+|. ...|+|.+.+++.. .+|.+ +. .++++|+|++|+|+.|+..+
T Consensus 2 CP~~C~C~-----~~~v~Cs~~~L~~~---~vP~~-------------------lp----~~l~~L~Ls~N~l~~l~~~~ 50 (130)
T 3rfe_A 2 CPAPCSCA-----GTLVDCGRRGLTWA---SLPTA-------------------FP----VDTTELVLTGNNLTALPPGL 50 (130)
T ss_dssp CCTTCEEE-----TTEEECCSSCCCTT---TSCSC-------------------CC----TTCSEEECTTSCCSSCCTTT
T ss_pred cCCCCEEc-----CCEEEeCCCCCccc---cCCCC-------------------CC----cCCCEEECCCCcCCccChhh
Confidence 56689997 35899988665311 23322 21 25899999999999999888
Q ss_pred ccchhccccEEEcCCCcC
Q psy16110 184 FSPHRDTLQELRLADNLF 201 (719)
Q Consensus 184 f~~~~~~L~~L~Ls~n~i 201 (719)
|. .+++|++|+|++|.+
T Consensus 51 f~-~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 51 LD-ALPALRTAHLGANPW 67 (130)
T ss_dssp GG-GCTTCCEEECCSSCC
T ss_pred hh-hccccCEEEecCCCe
Confidence 75 446677777766654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.47 E-value=0.00011 Score=68.47 Aligned_cols=83 Identities=17% Similarity=0.133 Sum_probs=40.1
Q ss_pred CCCcEEECcCC-CCCCc----CcCcccCCCCccEEEcCCCCCCCcC----hhhhcCCCCCCEEECCCCCCcccC----cc
Q psy16110 573 SSLEELNLNNN-ELTYL----FPSSFTIHSKLKTLKLAFNKFNYFP----KELILGLSYLQEIDLSNNQLKTID----DY 639 (719)
Q Consensus 573 ~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~----~~ 639 (719)
+.|++|+|++| ++... +..++...+.|++|+|++|++.... .+++..-+.|++|+|++|.|+... ..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 55666666653 55432 2233444555666666666555322 222334455666666666555321 12
Q ss_pred cCCCCCCCCEEeCCCC
Q psy16110 640 DYGYLPRLRKLNLNNN 655 (719)
Q Consensus 640 ~l~~l~~L~~L~Ls~N 655 (719)
.+..-+.|++|+|++|
T Consensus 121 aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTTTCCCSEEECCCC
T ss_pred HHhhCCceeEEECCCC
Confidence 2333444555555543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.30 E-value=5.8e-05 Score=70.41 Aligned_cols=39 Identities=13% Similarity=0.009 Sum_probs=17.2
Q ss_pred ccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCC
Q psy16110 314 AKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYN 353 (719)
Q Consensus 314 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n 353 (719)
+.|++|+|++|.|+.....++.. ++..-+.|++|+|+++
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~-aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLR-STLVTQSIVEFKADNQ 136 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHH-HTTTTCCCSEEECCCC
T ss_pred CccCeEecCCCcCCHHHHHHHHH-HHhhCCceeEEECCCC
Confidence 44555555555544433322222 2333444555555543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=89.10 E-value=0.84 Score=37.01 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=20.2
Q ss_pred CcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcC
Q psy16110 230 IKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMA 274 (719)
Q Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls 274 (719)
++.|...+|.+|.+|+.+.+..+ ++.|...+|.++.+|+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34444444444555554444432 444444444444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=86.30 E-value=1.4 Score=35.62 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=29.7
Q ss_pred CCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCC
Q psy16110 433 NNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAAT 482 (719)
Q Consensus 433 n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n 482 (719)
..++.+...+|.+|.+|+.+.|..+ ++.+...+|.+|.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCC
Confidence 3455566666666666666666653 56666666666666666666543
No 167
>3d24_B Peroxisome proliferator-activated receptor gamma coactivator 1-alpha; nuclear receptor, ligand binding domain, DNA- binding, metal-binding, nucleus; 2.11A {Homo sapiens}
Probab=23.68 E-value=11 Score=21.37 Aligned_cols=14 Identities=14% Similarity=0.593 Sum_probs=9.5
Q ss_pred ccccccCcCcCCCC
Q psy16110 20 QVSSEPCDTMIDDF 33 (719)
Q Consensus 20 ~~~~~~~~~~~~~~ 33 (719)
+...|||+||-..+
T Consensus 4 ~~qrRpCtELlKyL 17 (26)
T 3d24_B 4 KPQRRPCSELLKYL 17 (26)
T ss_pred CccCCcHHHHHHHH
Confidence 45678888875443
No 168
>1pqr_A Alpha-A-conotoxin EIVA; alpha-helix, two disulfide bonds, C-TERM amidation; HET: HYP; NMR {Synthetic} SCOP: j.30.1.3
Probab=23.11 E-value=21 Score=20.47 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=15.5
Q ss_pred CcCcCCCCCcceeeeccCCcceeccCCcc
Q psy16110 26 CDTMIDDFPYPCRCKKMSESQLAMDCDNV 54 (719)
Q Consensus 26 ~~~~~~~~~~~~~c~~~~~~~~~~~c~~~ 54 (719)
|+..-.+--+||-|.+... .+|+|-
T Consensus 3 cg~ypnaachpc~ckv~rp----~yc~rp 27 (31)
T 1pqr_A 3 CGPYPNAACHPCGCKVGRP----PYCDRP 27 (31)
T ss_dssp CCSSSSSSCCTTCSSSSCC----HHHHSC
T ss_pred cCCCCCcccccccccCCCC----CcCCCC
Confidence 4444444558999997544 467664
Done!