RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16110
(719 letters)
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 72.6 bits (178), Expect = 4e-13
Identities = 98/335 (29%), Positives = 146/335 (43%), Gaps = 17/335 (5%)
Query: 377 FQKLKSLDLNGNFLINL--ESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHN 433
F LK LDL GN L+ S +L+ L + NQ+ L K L + L +N
Sbjct: 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222
Query: 434 NLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK-SIPQYQF 492
NL P + +L HL+L N +P LK L+ L L L IP F
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIF 281
Query: 493 DELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDL 551
L L L L+ N L+ EIPE++ + L NL L L +NN +L LP ++ L L
Sbjct: 282 S-LQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339
Query: 552 SFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFN- 610
NK + G+ K N +L L+L+ N LT P L L L N
Sbjct: 340 WSNKFS---GEIPKNLGKHN--NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394
Query: 611 YFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQ 670
PK L S L+ + L +N ++ LP + L+++NNN+ + ++
Sbjct: 395 EIPKSLGACRS-LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453
Query: 671 LQIINLSFNR-LEKLPERLFNTFLYTNYDMAPNLV 704
LQ+++L+ N+ LP+ F + N D++ N
Sbjct: 454 LQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQF 487
Score = 66.4 bits (162), Expect = 3e-11
Identities = 132/485 (27%), Positives = 202/485 (41%), Gaps = 49/485 (10%)
Query: 211 TSEFHGLVNLRILDLSDNQIKA-IEEGILKGCDNLLELRMDHNRFT-SIPSVSLNGPRAL 268
+S L ++ ++LS+NQ+ I + I +L L + +N FT SIP S+ L
Sbjct: 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---L 142
Query: 269 RILSMAYNRI-GTLKAD--SFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR 325
L ++ N + G + D SF S + L+ L GN L + L + L L N+
Sbjct: 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLD---LGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199
Query: 326 LNKLNSDTFQGGAFNGLAKIHILN---LGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKS 382
L G L ++ L LGYN L+ I L
Sbjct: 200 LV--------GQIPRELGQMKSLKWIYLGYNNLSG-----------EIPYEIGGLTSLNH 240
Query: 383 LDLNGNFLINLESTGLED--TLDNLNVRDNQIT-TLSSSALNYKLLTKLDLSHNNLKELE 439
LDL N L + L + L L + N+++ + S + + L LDLS N+L
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300
Query: 440 PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK-SIPQYQFDELLNL 498
P + L L+L N +PV L +L+VL L + IP+ + NL
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNKFSGEIPK-NLGKHNNL 358
Query: 499 KYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
L L+ N+LT EIPE + + NL L L +N++ SL S++R+ L N
Sbjct: 359 TVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN--- 414
Query: 558 TFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKF-NYFPKEL 616
+F G+ + +K L+++NN L S L+ L LA NKF P
Sbjct: 415 SFSGELPSEFTKLPLVYF--LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472
Query: 617 ILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINL 676
G L+ +DLS NQ G L L +L L+ N + + +L ++L
Sbjct: 473 --GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530
Query: 677 SFNRL 681
S N+L
Sbjct: 531 SHNQL 535
Score = 61.8 bits (150), Expect = 9e-10
Identities = 102/390 (26%), Positives = 166/390 (42%), Gaps = 40/390 (10%)
Query: 213 EFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFT-SIPSVSLNGPRALRIL 271
E GL +L LDL N + L NL L + N+ + IP S+ + L L
Sbjct: 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISL 289
Query: 272 SMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNS 331
++ N + + + + LE + L N T A L ++ +L L N+
Sbjct: 290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK------ 343
Query: 332 DTFQGGAFNGLAK---IHILNLGYNRLNKLNSDTF----QGTHITIFSFFQDFQKLKSLD 384
F G L K + +L+L N L + + +FS + + KSL
Sbjct: 344 --FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL- 400
Query: 385 LNGNFLINLESTGLEDTLDNLNVRDNQIT-TLSSSALNYKLLTKLDLSHNNLKELEPTAF 443
G +L + ++DN + L S L+ LD+S+NNL+ +
Sbjct: 401 ------------GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448
Query: 444 TNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCL 503
++P+L L+L+RN LP K+LE LDL+ + L L L L
Sbjct: 449 WDMPSLQMLSLARNKFFGGLP--DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKL 506
Query: 504 AHNHLT-EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGD 562
+ N L+ EIP+ + + L LDLS+N + S +P + +LDLS N+L+ G+
Sbjct: 507 SENKLSGEIPDEL-SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS---GE 562
Query: 563 YFNTKSKPNTSSLEELNLNNNELTYLFPSS 592
K+ N SL ++N+++N L PS+
Sbjct: 563 I--PKNLGNVESLVQVNISHNHLHGSLPST 590
Score = 56.8 bits (137), Expect = 3e-08
Identities = 98/360 (27%), Positives = 160/360 (44%), Gaps = 44/360 (12%)
Query: 311 NGLAKIHILNL-GYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN-KLNSDTFQGTHI 368
N +++ ++L G N K++S F+ L I +NL N+L+ + D F +
Sbjct: 66 NNSSRVVSIDLSGKNISGKISSAIFR------LPYIQTINLSNNQLSGPIPDDIFTTSS- 118
Query: 369 TIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQIT-TLSSSALNYKLLTK 427
L+ L+L+ N G L+ L++ +N ++ + + ++ L
Sbjct: 119 ----------SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168
Query: 428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
LDL N L P + TN+ +L L L+ N + +P +K L+ + L L
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGE 227
Query: 488 PQYQFDELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM 546
Y+ L +L +L L +N+LT IP NL NL YL L N + S++ L +
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286
Query: 547 KRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAF 606
LDLS N L+ G+ + +LE L+L +N T P + T +L+ L+L
Sbjct: 287 ISLDLSDNSLS---GEIPELVIQ--LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341
Query: 607 NKFN-YFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLP-------RLRKLNLNNNNID 658
NKF+ PK L + L +DLS N L G +P L KL L +N+++
Sbjct: 342 NKFSGEIPKNL-GKHNNLTVLDLSTNNLT-------GEIPEGLCSSGNLFKLILFSNSLE 393
Score = 45.2 bits (107), Expect = 1e-04
Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 24/195 (12%)
Query: 290 RWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLN-KLNSDTFQGGAFNGLAKIHIL 348
R L R+ L+ N + F L ++ L++ N L ++NS + + + +L
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD------MPSLQML 457
Query: 349 NLGYNRLNKLNSDTFQGTHI------------TIFSFFQDFQKLKSLDLNGNFL---INL 393
+L N+ D+F + + +L L L+ N L I
Sbjct: 458 SLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517
Query: 394 ESTGLEDTLDNLNVRDNQIT-TLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHL 452
E + + L +L++ NQ++ + +S +L++LDLS N L P NV +L+ +
Sbjct: 518 ELSSCKK-LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576
Query: 453 NLSRNAHLSSLPVGG 467
N+S N SLP G
Sbjct: 577 NISHNHLHGSLPSTG 591
Score = 33.3 bits (76), Expect = 0.56
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 189 DTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELR 248
L+ L L+ N F ++ + L L L LS+N++ L C L+ L
Sbjct: 475 KRLENLDLSRNQFSGAV-----PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529
Query: 249 MDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
+ HN+ + S + L L ++ N++
Sbjct: 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 69.2 bits (169), Expect = 2e-12
Identities = 80/270 (29%), Positives = 115/270 (42%), Gaps = 18/270 (6%)
Query: 353 NRLNKLNSDTFQGTHITIFSFF-QDFQKLKSLDLNGNFL--INLESTGLEDTLDNLNVRD 409
L L S + + L SLDL+ N + I L+ L L++ D
Sbjct: 90 LNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD 149
Query: 410 NQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFD 469
N+I +L S N L LDLS N+L +L P +N+ L +L+LS N +S LP
Sbjct: 150 NKIESLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDLSGN-KISDLPPEIEL 207
Query: 470 PLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN 529
LE LDL+ + + L NL L L++N L ++PE NL NL LDLSN
Sbjct: 208 LS-ALEELDLSNNSIIELLS-SLSNLKNLSGLELSNNKLEDLPE-SIGNLSNLETLDLSN 264
Query: 530 NNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNT-------KSKPNTSSLEELNLNN 582
N I ++ SL L +++ LDLS N L+ + T EL LN+
Sbjct: 265 NQISSIS--SLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNS 322
Query: 583 NELTYLFPS-SFTIHSKLKTLKLAFNKFNY 611
L S T + ++ + N
Sbjct: 323 ILLNNNILSNGETSSPEALSILESLNNLWT 352
Score = 64.2 bits (156), Expect = 8e-11
Identities = 65/201 (32%), Positives = 101/201 (50%), Gaps = 12/201 (5%)
Query: 493 DELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS 552
EL NL L L +N++T+IP ++ NL LDLS+N I +L LP++K LDLS
Sbjct: 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRN-LPNLKNLDLS 171
Query: 553 FNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYF 612
FN L+ K N S+L L+L+ N+++ P + S L+ L L+ N
Sbjct: 172 FNDLSDL------PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIEL 224
Query: 613 PKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQ 672
+ L L ++LSNN+L+ + + G L L L+L+NN I +IS + + L+
Sbjct: 225 L-SSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLSNNQISSIS--SLGSLTNLR 280
Query: 673 IINLSFNRLEKLPERLFNTFL 693
++LS N L + L
Sbjct: 281 ELDLSGNSLSNALPLIALLLL 301
Score = 48.4 bits (115), Expect = 9e-06
Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 23/228 (10%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
L+ L LDL+ N+++ L NL L +D+N T IP + L+ L +
Sbjct: 89 LLNLLPLPSLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDL 147
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDT 333
+ N+I +L + L+ + L N L+ + N L+ ++ L+L N+++ L +
Sbjct: 148 SDNKIESLPSPLRNLP-NLKNLDLSFNDLSDLPKLLSN-LSNLNNLDLSGNKISDLPPEI 205
Query: 334 FQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL 393
L+ + L+L N + +L S + + L L+L+ N L +L
Sbjct: 206 ------ELLSALEELDLSNNSIIELL------------SSLSNLKNLSGLELSNNKLEDL 247
Query: 394 EST-GLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEP 440
+ G L+ L++ +NQI+++SS + L +LDLS N+L P
Sbjct: 248 PESIGNLSNLETLDLSNNQISSISSLG-SLTNLRELDLSGNSLSNALP 294
Score = 45.7 bits (108), Expect = 6e-05
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 567 KSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEI 626
++ N L L+LN N L + L +L L N P + L S L+E+
Sbjct: 87 ENLLNLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKSNLKEL 145
Query: 627 DLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPE 686
DLS+N+++++ LP L+ L+L+ N++ + N S L ++LS N++ LP
Sbjct: 146 DLSDNKIESLPS-PLRNLPNLKNLDLSFNDLSDLP-KLLSNLSNLNNLDLSGNKISDLPP 203
Query: 687 RL 688
+
Sbjct: 204 EI 205
Score = 34.2 bits (78), Expect = 0.26
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 13/163 (7%)
Query: 546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSS--LEELNLNNNELTYLFPSSFTIHSKLKTLK 603
L+LS N L S S + L+ + N L L +L
Sbjct: 49 RLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLN---------LLPLPSLD 99
Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISET 663
L N+ E +L L+ L +DL NN + I L++L+L++N I+++
Sbjct: 100 LNLNRLRSNISE-LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPS- 157
Query: 664 CFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNYDMAPNLVFQ 706
N L+ ++LSFN L LP+ L N N D++ N +
Sbjct: 158 PLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISD 200
Score = 32.2 bits (73), Expect = 0.96
Identities = 57/269 (21%), Positives = 92/269 (34%), Gaps = 25/269 (9%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTS-EFHGLVNLRILD 224
++ LD S N + L L + L+ L L+ N + L NL LD
Sbjct: 142 LKELDLSDNKIESLPSPLRNL--PNLKNLDLSFN-------DLSDLPKLLSNLSNLNNLD 192
Query: 225 LSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKAD 284
LS N+I + I L EL + +N + S N L L ++ N++ L +
Sbjct: 193 LSGNKISDLPPEIELLS-ALEELDLSNNSIIELLSSLSNLKN-LSGLELSNNKLEDLP-E 249
Query: 285 SFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAK 344
S + LE + L N++++I + L + L+L N L+ L
Sbjct: 250 SIGNLSNLETLDLSNNQISSIS--SLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLL 307
Query: 345 IHILNL--GYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTL 402
+L L +LN + + I + L L NL +
Sbjct: 308 NLLLTLKALELKLNSILLNNN----ILSNGETSSPEAL----SILESLNNLWTLDNALDE 359
Query: 403 DNLNVRDNQITTLSSSALNYKLLTKLDLS 431
NLN + S L+ L
Sbjct: 360 SNLNRYIVKNPNAIGSLLDLVKKHVNQLL 388
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 57.6 bits (140), Expect = 7e-11
Identities = 31/60 (51%), Positives = 40/60 (66%)
Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
NLK L L++N LT IP+ FK L NL LDLS NN+ ++ + GLPS++ LDLS N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 53.7 bits (130), Expect = 2e-09
Identities = 27/60 (45%), Positives = 33/60 (55%)
Query: 473 KLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNI 532
L+ LDL+ L IP F L NLK L L+ N+LT I F L +L LDLS NN+
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 52.9 bits (128), Expect = 3e-09
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 623 LQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRL 681
L+ +DLSNN+L I D + LP L+ L+L+ NN+ +IS F L+ ++LS N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 52.2 bits (126), Expect = 7e-09
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
NL+ LDLS+N++ I +G KG NL L + N TSI + +G +LR L ++ N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 48.7 bits (117), Expect = 1e-07
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNL 580
NL LDLSNN + + G+ GLP++K LDLS N LT+ + F+ SL L+L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS-----GLPSLRSLDL 55
Query: 581 NNNEL 585
+ N L
Sbjct: 56 SGNNL 60
Score = 48.3 bits (116), Expect = 2e-07
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
L LDLS+N L + AF +P L L+LS N +L+S+ F L L LDL+ L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 47.9 bits (115), Expect = 2e-07
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 598 KLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNI 657
LK+L L+ N+ P GL L+ +DLS N L +I + LP LR L+L+ NN+
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 47.2 bits (113), Expect = 4e-07
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 292 LERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLG 351
L+ + L NRLT I GAF GL + +L+L N L ++ + F GL + L+L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS-----GLPSLRSLDLS 56
Query: 352 YNRL 355
N L
Sbjct: 57 GNNL 60
Score = 46.0 bits (110), Expect = 1e-06
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 402 LDNLNVRDNQITTLSSSALNY-KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
L +L++ +N++T + A L LDLS NNL + P AF+ +P+L L+LS N
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
Score = 44.8 bits (107), Expect = 2e-06
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 574 SLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQL 633
+L+ L+L+NN LT + +F LK L L+ N E GL L+ +DLS N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 44.5 bits (106), Expect = 4e-06
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 268 LRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRL 326
L+ L ++ NR+ + +F L+ + L GN LT+I AF+GL + L+L N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 41.0 bits (97), Expect = 5e-05
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 646 RLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
L+ L+L+NN + I + F L++++LS N L + F
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAF 44
Score = 40.2 bits (95), Expect = 1e-04
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMD 250
L+ L L++N F GL NL++LDLS N + +I G +L L +
Sbjct: 2 LKSLDLSNNRLTV-----IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLS 56
Query: 251 HNRF 254
N
Sbjct: 57 GNNL 60
Score = 36.4 bits (85), Expect = 0.003
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 315 KIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFF 374
+ L+L NRL + GAF GL + +L+L N L ++ + F G
Sbjct: 1 NLKSLDLSNNRLTVIPD-----GAFKGLPNLKVLDLSGNNLTSISPEAFSGLP------- 48
Query: 375 QDFQKLKSLDLNGN 388
L+SLDL+GN
Sbjct: 49 ----SLRSLDLSGN 58
Score = 31.7 bits (73), Expect = 0.11
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 344 KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDT-- 401
+ L+L NRL + F+G LK LDL+GN L ++
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLP-----------NLKVLDLSGNNLTSISPEAFSGLPS 49
Query: 402 LDNLNVRDNQI 412
L +L++ N +
Sbjct: 50 LRSLDLSGNNL 60
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 57.4 bits (138), Expect = 2e-08
Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 36/231 (15%)
Query: 472 KKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNN 531
+++ L L LKS+P+ + N+K L N LT IP + + ++LS N
Sbjct: 199 EQITTLILDNNELKSLPE---NLQGNIKTLYANSNQLTSIPATLPDTI---QEMELSINR 252
Query: 532 IVNLRVGSLYGLPS-MKRLDLSFNKLTTFKGD----------YFNT-KSKPN--TSSLEE 577
I L LPS ++ LDL NK++ + Y N+ ++ P S +
Sbjct: 253 ITELP----ERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITH 308
Query: 578 LNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTID 637
LN+ +N LT L P T+ LKTL+ N P L LQ +D+S NQ+ +
Sbjct: 309 LNVQSNSLTAL-PE--TLPPGLKTLEAGENALTSLPASLP---PELQVLDVSKNQITVLP 362
Query: 638 DYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERL 688
+ P + L+++ N + + E + LQI+ S N L +LPE L
Sbjct: 363 E---TLPPTITTLDVSRNALTNLPENL---PAALQIMQASRNNLVRLPESL 407
Score = 39.7 bits (92), Expect = 0.005
Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 22/159 (13%)
Query: 380 LKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELE 439
L+SLDL N + L L + L L+V DN I TL + + +T L++ N+L L
Sbjct: 264 LQSLDLFHNKISCLPEN-LPEELRYLSVYDNSIRTLPAHLPSG--ITHLNVQSNSLTALP 320
Query: 440 PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELL--N 497
T + TL NA L+SLP P +L+VLD++ + +P E L
Sbjct: 321 ETLPPGLKTLE---AGENA-LTSLP-ASLPP--ELQVLDVSKNQITVLP-----ETLPPT 368
Query: 498 LKYLCLAHNHLTEIPEMMFKNL-LNLTYLDLSNNNIVNL 535
+ L ++ N LT +PE NL L + S NN+V L
Sbjct: 369 ITTLDVSRNALTNLPE----NLPAALQIMQASRNNLVRL 403
Score = 36.2 bits (83), Expect = 0.060
Identities = 65/243 (26%), Positives = 105/243 (43%), Gaps = 43/243 (17%)
Query: 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK 282
L L +N++K++ E L+G N+ L + N+ TSIP+ P ++ + ++ NRI L
Sbjct: 204 LILDNNELKSLPEN-LQG--NIKTLYANSNQLTSIPATL---PDTIQEMELSINRITEL- 256
Query: 283 ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGL 342
+ S L+ + L N+++ + L + + + N + L + G
Sbjct: 257 PERLPSA--LQSLDLFHNKISCLPENLPEELRYLSVYD---NSIRTLPAHLPSG------ 305
Query: 343 AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTL 402
I LN+ N L L G LK+L+ N L +L ++ L L
Sbjct: 306 --ITHLNVQSNSLTALPETLPPG--------------LKTLEAGENALTSLPAS-LPPEL 348
Query: 403 DNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLL-HLNLSRNAHLS 461
L+V NQIT L + +T LD+S N L L N+P L + SRN +L
Sbjct: 349 QVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLP----ENLPAALQIMQASRN-NLV 401
Query: 462 SLP 464
LP
Sbjct: 402 RLP 404
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 50.4 bits (121), Expect = 2e-06
Identities = 58/283 (20%), Positives = 89/283 (31%), Gaps = 66/283 (23%)
Query: 468 FDPLKKLEVLDLAATGLKSIPQYQFDELL----NLKYLCLAHNHLTEIPE------MMFK 517
L L+VL L L L +LK LCL+ N IP
Sbjct: 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78
Query: 518 NLLNLTYLDLSNNNIVNLRVGSLYGL--------------------------------PS 545
L LDLS+N + G L L P+
Sbjct: 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA 138
Query: 546 MKRLDLSFNKLTTFKGDYFNT-KSKPNTSSLEELNLNNNEL-----TYLFPSSFTIHSKL 599
+++L L N+L K+ L+ELNL NN + L + L
Sbjct: 139 LEKLVLGRNRLEG--ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG-LKANCNL 195
Query: 600 KTLKLAFNKFNY----FPKELILGLSYLQEIDLSNNQLK-----TIDDYDYGYLPRLRKL 650
+ L L N E + L L+ ++L +N L + L L
Sbjct: 196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255
Query: 651 NLNNNNIDA-----ISETCFFNSSQLQIINLSFNRLEKLPERL 688
+L+ N+I ++E L ++L N+ + +L
Sbjct: 256 SLSCNDITDDGAKDLAEVL-AEKESLLELDLRGNKFGEEGAQL 297
Score = 43.5 bits (103), Expect = 2e-04
Identities = 57/243 (23%), Positives = 76/243 (31%), Gaps = 52/243 (21%)
Query: 372 SFFQDFQKLKSLDLNGNFLINLESTGLED-----TLDNLNVRDN----QITTLSSSAL-- 420
L+ LDL+ N L LE +L L + +N + L + L
Sbjct: 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKD 134
Query: 421 NYKLLTKLDLSHNNLKE--LEPTA--FTNVPTLLHLNLSRN-------AHLSSLPVGGFD 469
L KL L N L+ E A L LNL+ N L G
Sbjct: 135 LPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRAL----AEGLK 190
Query: 470 PLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN 529
LEVLDL GL L +L +L L+L +
Sbjct: 191 ANCNLEVLDLNNNGLTDE---------GASALA-----------ETLASLKSLEVLNLGD 230
Query: 530 NNIVN-----LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNE 584
NN+ + L L S+ L LS N +T SL EL+L N+
Sbjct: 231 NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE-VLAEKESLLELDLRGNK 289
Query: 585 LTY 587
Sbjct: 290 FGE 292
Score = 43.1 bits (102), Expect = 4e-04
Identities = 52/233 (22%), Positives = 81/233 (34%), Gaps = 37/233 (15%)
Query: 166 IRRLDFSGNALRRLSDKLFSP--HRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRIL 223
++ LD S NAL + +LQEL+L +N GD + + L L
Sbjct: 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142
Query: 224 DLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG---- 279
L N+++ C+ L + L R L+ L++A N IG
Sbjct: 143 VLGRNRLEG------ASCEALAKA--------------LRANRDLKELNLANNGIGDAGI 182
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNG----LAKIHILNLGYNRLNKLNSDTFQ 335
A+ + LE + L N LT A L + +LNLG N L +
Sbjct: 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242
Query: 336 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN 388
+ + L+L N + + + + L LDL GN
Sbjct: 243 SALLSPNISLLTLSLSCNDITDDGAKDLAE-------VLAEKESLLELDLRGN 288
Score = 40.4 bits (95), Expect = 0.002
Identities = 41/165 (24%), Positives = 62/165 (37%), Gaps = 35/165 (21%)
Query: 165 PIRRLDFSGNAL-----RRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGL-- 217
+ +L N L L+ L L+EL LA+N GD+ + GL
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKAL--RANRDLKELNLANNGIGDAGIR----ALAEGLKA 191
Query: 218 -VNLRILDLSDNQI-----KAIEEGILKGCDNLLELRMDHNRFTSIP-----SVSLNGPR 266
NL +LDL++N + A+ E + +L L + N T S L+
Sbjct: 192 NCNLEVLDLNNNGLTDEGASALAETLASLK-SLEVLNLGDNNLTDAGAAALASALLSPNI 250
Query: 267 ALRILSMAYNRIGTLKA-------DSFLSQRWLERIILRGNRLTT 304
+L LS++ N I A S L+ LRGN+
Sbjct: 251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELD---LRGNKFGE 292
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 48.6 bits (115), Expect = 1e-05
Identities = 84/297 (28%), Positives = 127/297 (42%), Gaps = 73/297 (24%)
Query: 378 QKLKSLDLNGNFLINLESTGLEDTLD-------NLNVRDNQITTLSSSALNYKLLTKLDL 430
QK+++ NGN ++N+ +GL D L + DN +T+L AL +L T L++
Sbjct: 193 QKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSL--PALPPELRT-LEV 249
Query: 431 SHNNLKELEPTAFTNVPTLLHLNLSRN--AHLSSLPVGGFDPLKKLEVLDLAATGLKSIP 488
S N L L P LL L++ N HL +LP G L KL + T L +P
Sbjct: 250 SGNQLTSLPVLP----PGLLELSIFSNPLTHLPALPSG----LCKLWIFGNQLTSLPVLP 301
Query: 489 QYQFDELLNLKYLCLAHNHLTEIPEM--------MFKNLLN--------LTYLDLSNNNI 532
L+ L ++ N L +P + + N L L L +S+N +
Sbjct: 302 P-------GLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQL 354
Query: 533 VNL---------------RVGSLYGLPS-MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLE 576
+L R+ SL LPS +K L +S N+LT+ S L+
Sbjct: 355 ASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSL---------PVLPSELK 405
Query: 577 ELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQL 633
EL ++ N LT L P + S L +L + N+ P+ LI LS ++L N L
Sbjct: 406 ELMVSGNRLTSL-P---MLPSGLLSLSVYRNQLTRLPESLI-HLSSETTVNLEGNPL 457
Score = 31.7 bits (71), Expect = 1.9
Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 38/221 (17%)
Query: 476 VLDLAATGLKSIPQYQFDEL-LNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
VL++ +GL ++P D L ++ L + N+LT +P + + L L++S N + +
Sbjct: 205 VLNVGESGLTTLP----DCLPAHITTLVIPDNNLTSLPALPPE----LRTLEVSGNQLTS 256
Query: 535 LRVG-------SLYGLP--SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNEL 585
L V S++ P + L KL F + P L+EL++++N+L
Sbjct: 257 LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLP--PGLQELSVSDNQL 314
Query: 586 TYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLP 645
L P+ + S+L L N+ P S LQE+ +S+NQL ++ LP
Sbjct: 315 ASL-PA---LPSELCKLWAYNNQLTSLPTLP----SGLQELSVSDNQLASLPT-----LP 361
Query: 646 -RLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLP 685
L KL NN + ++ S L+ + +S NRL LP
Sbjct: 362 SELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLP 398
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 40.2 bits (95), Expect = 8e-05
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRV 537
NL+ L L++N +T++P NL NL LDLS N I +L
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 36.3 bits (85), Expect = 0.002
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKG 561
NL LDLSNN I +L L LP+++ LDLS NK+T
Sbjct: 2 NLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKITDLSP 40
Score = 35.9 bits (84), Expect = 0.003
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS 261
NL LDLS+NQI + L NL L + N+ T + +S
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSPLS 42
Score = 34.4 bits (80), Expect = 0.008
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 623 LQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE 662
L+ +DLSNNQ+ + LP L L+L+ N I +S
Sbjct: 3 LETLDLSNNQITDLPPL--SNLPNLETLDLSGNKITDLSP 40
Score = 32.8 bits (76), Expect = 0.028
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 645 PRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPE 686
L L+L+NN I + N L+ ++LS N++ L
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 30.5 bits (70), Expect = 0.19
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEP 440
L+ L++ +NQIT L + N L LDLS N + +L P
Sbjct: 3 LETLDLSNNQITDLPPLS-NLPNLETLDLSGNKITDLSP 40
Score = 30.2 bits (69), Expect = 0.29
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 472 KKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE 513
LE LDL+ + +P L NL+ L L+ N +T++
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 29.8 bits (68), Expect = 0.32
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPV 465
L LDLS+N + +L P +N+P L L+LS N ++ L
Sbjct: 3 LETLDLSNNQITDLPP--LSNLPNLETLDLSGN-KITDLSP 40
Score = 29.4 bits (67), Expect = 0.58
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 598 KLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTID 637
L+TL L+ N+ P + L L+ +DLS N++ +
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLS 39
Score = 28.2 bits (64), Expect = 1.2
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEE 235
L+ L L++N I L NL LDLS N+I +
Sbjct: 3 LETLDLSNN-------QITDLPPLSNLPNLETLDLSGNKITDLSP 40
Score = 26.7 bits (60), Expect = 5.1
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 292 LERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNS 331
LE + L N++T + + L + L+L N++ L+
Sbjct: 3 LETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDLSP 40
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 44.9 bits (106), Expect = 2e-04
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 37/216 (17%)
Query: 425 LTKLDLSHN-NLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA-T 482
LT+L LS +L EL P++ N+ L HL + +L +LP G L+ LE LDL+ +
Sbjct: 780 LTRLFLSDIPSLVEL-PSSIQNLHKLEHLEIENCINLETLPTG--INLESLESLDLSGCS 836
Query: 483 GLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
L++ P D N+ L L+ + E+P + NL++LD++ G
Sbjct: 837 RLRTFP----DISTNISDLNLSRTGIEEVP-WWIEKFSNLSFLDMN-------------G 878
Query: 543 LPSMKRLDLSFNKLTTFKGDYFN-----TKSKPNTSSLEELNLNNNELTYLFPSSFTIHS 597
+++R+ L+ +KL + F+ T++ N S E +N + L PS+ I+
Sbjct: 879 CNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKL-PSTVCIN- 936
Query: 598 KLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQL 633
N FN + L+ S +++ LS ++
Sbjct: 937 -------FINCFNLDQEALLQQQSIFKQLILSGEEV 965
Score = 37.2 bits (86), Expect = 0.033
Identities = 79/313 (25%), Positives = 129/313 (41%), Gaps = 48/313 (15%)
Query: 425 LTKLDLSH-NNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA-T 482
L L LS ++L EL P++ + L L++SR +L LP G LK L L+L+ +
Sbjct: 659 LETLKLSDCSSLVEL-PSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGCS 715
Query: 483 GLKSIPQYQFDELLNLKYLCLAHNHLTEIP-EMMFKNLLNLTYLDLSNNNIVNLRVGSLY 541
LKS P D N+ +L L + E P + +NL L ++ + + RV L
Sbjct: 716 RLKSFP----DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE-RVQPLT 770
Query: 542 GL-----PSMKRLDLS--------------FNKLTTFK-GDYFNTKSKP---NTSSLEEL 578
L PS+ RL LS +KL + + N ++ P N SLE L
Sbjct: 771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESL 830
Query: 579 NLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDD 638
+L+ FP T S L + + ++ ++ LS+L +N Q +++
Sbjct: 831 DLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSN-LSFLDMNGCNNLQRVSLNI 889
Query: 639 YDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLP----ERLFNTFLY 694
+L ++ ++ A++E + S ++ + N KLP N F
Sbjct: 890 SKLKHLET-----VDFSDCGALTEASWNGSPS-EVAMATDNIHSKLPSTVCINFINCF-- 941
Query: 695 TNYDMAPNLVFQS 707
N D L QS
Sbjct: 942 -NLDQEALLQQQS 953
>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies). This family
includes a number of leucine rich repeats. This family
contains a large number of BSPA-like surface antigens
from Trichomonas vaginalis.
Length = 128
Score = 35.6 bits (83), Expect = 0.019
Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 571 NTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSN 630
+SL+ + L ++ LT + +F S L ++ + + + S L I + +
Sbjct: 32 GCTSLKSITLPSS-LTSIGSYAFYNCSSLTSITIP-SSLTSIGEYAFSNCSSLTSITIPS 89
Query: 631 NQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQL 671
N L TI Y + L+ + + ++ + I + F N S L
Sbjct: 90 N-LTTIGSYAFSNC-SLKSITIPSS-VTTIGDYAFSNCSSL 127
Score = 35.2 bits (82), Expect = 0.032
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 621 SYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNR 680
L I + ++ + +I +Y + L+ + L ++ + +I F+N S L I + +
Sbjct: 11 CSLTSITIPSS-VTSIGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCSSLTSITIP-SS 67
Query: 681 LEKLPERLFN 690
L + E F+
Sbjct: 68 LTSIGEYAFS 77
Score = 34.4 bits (80), Expect = 0.048
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 619 GLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSF 678
G + L+ I L ++ L +I Y + L + + ++ + +I E F N S L I +
Sbjct: 32 GCTSLKSITLPSS-LTSIGSYAFYNCSSLTSITIPSS-LTSIGEYAFSNCSSLTSITIPS 89
Query: 679 NRLEKLPERLF 689
N L + F
Sbjct: 90 N-LTTIGSYAF 99
Score = 32.1 bits (74), Expect = 0.29
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
SI Y F +L + + + +T I E F +L + L +++ ++ + Y
Sbjct: 1 TSIGDYAFYNC-SLTSITIP-SSVTSIGEYAFSGCTSLKSITL-PSSLTSIGSYAFYNCS 57
Query: 545 SMKRLDLSFNKLTTFKGDY-FNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
S+ + + + LT+ G+Y F+ N SSL + + +N LT + +F + LK++
Sbjct: 58 SLTSITIP-SSLTSI-GEYAFS-----NCSSLTSITIPSN-LTTIGSYAF-SNCSLKSIT 108
Query: 604 L 604
+
Sbjct: 109 I 109
Score = 28.7 bits (65), Expect = 5.3
Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 292 LERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLG 351
L+ I L + LT+I AF + + + + + L + AF+ + + + +
Sbjct: 36 LKSITL-PSSLTSIGSYAFYNCSSLTSITIPSS-LTSIGE-----YAFSNCSSLTSITIP 88
Query: 352 YNRLNKLNSDTFQGTHITIFSFFQDFQKLKS 382
N L + S F + + +
Sbjct: 89 SN-LTTIGSYAFSNCSLKSITIPSSVTTIGD 118
Score = 28.3 bits (64), Expect = 7.7
Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 25/132 (18%)
Query: 413 TTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLK 472
T++ A LT + + +++ + AF+ +L + L + L+S+ F
Sbjct: 1 TSIGDYAFYNCSLTSITIP-SSVTSIGEYAFSGCTSLKSITLPSS--LTSIGSYAFYNCS 57
Query: 473 KLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNH---------------------LTEI 511
L + + ++ L SI +Y F +L + + N +T I
Sbjct: 58 SLTSITIPSS-LTSIGEYAFSNCSSLTSITIPSNLTTIGSYAFSNCSLKSITIPSSVTTI 116
Query: 512 PEMMFKNLLNLT 523
+ F N +L
Sbjct: 117 GDYAFSNCSSLK 128
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 35.9 bits (83), Expect = 0.068
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 578 LNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTID 637
L L+N L P+ + L+++ L+ N + ++ L+ +DLS N
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 638 DYDYGYLPRLRKLNLNNN 655
G L LR LNLN N
Sbjct: 483 PESLGQLTSLRILNLNGN 500
Score = 35.2 bits (81), Expect = 0.13
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 626 IDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE-KL 684
+ L N L+ D L L+ +NL+ N+I + + L++++LS+N +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 685 PERL 688
PE L
Sbjct: 483 PESL 486
Score = 35.2 bits (81), Expect = 0.13
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 511 IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
IP + K L +L ++LS N+I SL + S++ LDLS+N S P
Sbjct: 434 IPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN---------GSIP 483
Query: 571 NT----SSLEELNLNNNELTYLFPSS 592
+ +SL LNLN N L+ P++
Sbjct: 484 ESLGQLTSLRILNLNGNSLSGRVPAA 509
Score = 34.4 bits (79), Expect = 0.24
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 570 PNTSS----LEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE 625
PN S L+ +NL+ N + P S + L+ L L++N FN E + L+ L+
Sbjct: 435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494
Query: 626 IDLSNNQL 633
++L+ N L
Sbjct: 495 LNLNGNSL 502
Score = 32.1 bits (73), Expect = 1.3
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 620 LSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679
L +LQ I+LS N ++ G + L L+L+ N+ + + L+I+NL+ N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500
Query: 680 RLE-KLPERL 688
L ++P L
Sbjct: 501 SLSGRVPAAL 510
Score = 31.7 bits (72), Expect = 1.5
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 402 LDNLNVRDNQIT-TLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHL 460
L ++N+ N I + S + L LDLS+N+ P + + +L LNL+ N+
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503
Query: 461 SSLP--VGG 467
+P +GG
Sbjct: 504 GRVPAALGG 512
Score = 30.9 bits (70), Expect = 3.0
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 477 LDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNNIVNL 535
L L GL+ +L +L+ + L+ N + IP ++ +L LDLS N+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGS 481
Query: 536 RVGSLYGLPSMKRLDLSFNKLT 557
SL L S++ L+L+ N L+
Sbjct: 482 IPESLGQLTSLRILNLNGNSLS 503
Score = 29.8 bits (67), Expect = 6.7
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 290 RWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILN 349
R L+ I L GN + + + + +L+L YN N ++ L + ILN
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-----LGQLTSLRILN 496
Query: 350 LGYNRL 355
L N L
Sbjct: 497 LNGNSL 502
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 29.6 bits (68), Expect = 0.30
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 217 LVNLRILDLSDNQIKAIEEGILKG 240
L NLR LDLS+NQ+ ++ G +G
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 28.1 bits (64), Expect = 0.94
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 425 LTKLDLSHNNLKELEPTAFTN 445
L +LDLS+N L L P AF
Sbjct: 4 LRELDLSNNQLSSLPPGAFQG 24
Score = 27.7 bits (63), Expect = 1.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 644 LPRLRKLNLNNNNIDAISETCF 665
LP LR+L+L+NN + ++ F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAF 22
Score = 27.7 bits (63), Expect = 1.5
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 669 SQLQIINLSFNRLEKLPERLFN 690
L+ ++LS N+L LP F
Sbjct: 2 PNLRELDLSNNQLSSLPPGAFQ 23
Score = 27.3 bits (62), Expect = 1.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 495 LLNLKYLCLAHNHLTEIPEMMFKN 518
L NL+ L L++N L+ +P F+
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 29.6 bits (68), Expect = 0.30
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 217 LVNLRILDLSDNQIKAIEEGILKG 240
L NLR LDLS+NQ+ ++ G +G
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 28.1 bits (64), Expect = 0.94
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 425 LTKLDLSHNNLKELEPTAFTN 445
L +LDLS+N L L P AF
Sbjct: 4 LRELDLSNNQLSSLPPGAFQG 24
Score = 27.7 bits (63), Expect = 1.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 644 LPRLRKLNLNNNNIDAISETCF 665
LP LR+L+L+NN + ++ F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAF 22
Score = 27.7 bits (63), Expect = 1.5
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 669 SQLQIINLSFNRLEKLPERLFN 690
L+ ++LS N+L LP F
Sbjct: 2 PNLRELDLSNNQLSSLPPGAFQ 23
Score = 27.3 bits (62), Expect = 1.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 495 LLNLKYLCLAHNHLTEIPEMMFKN 518
L NL+ L L++N L+ +P F+
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 32.6 bits (74), Expect = 0.84
Identities = 47/251 (18%), Positives = 84/251 (33%), Gaps = 58/251 (23%)
Query: 166 IRRLDFSGN-----ALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEF-----H 215
+ +D SGN A+ L + + + L+ + +D G + ++S
Sbjct: 32 LVEVDLSGNTIGTEAMEELCNVIAN--VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALL 89
Query: 216 GLVNLRILDLSDNQI--KAIEEGI--LKGCDNLLELRMDHNRFTSIPSVSLNGPRALRIL 271
L+ +DLSDN + EE + +L+ L++++N GP A +
Sbjct: 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL---------GPIAGGRI 140
Query: 272 SMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNS 331
A + K + + LE +I NRL NG ++ L +
Sbjct: 141 GKALFHLAYNKKAA--DKPKLEVVICGRNRL-------ENGSKELSAALLESHEN----- 186
Query: 332 DTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLI 391
+ + + N + +G + F L+ LDL N
Sbjct: 187 -------------LKEVKIQQNGIRP------EGVTMLAFLGLFYSHSLEVLDLQDNTFT 227
Query: 392 NLESTGLEDTL 402
S L D L
Sbjct: 228 LEGSRYLADAL 238
>gnl|CDD|197684 smart00365, LRR_SD22, Leucine-rich repeat, SDS22-like subfamily.
Length = 22
Score = 28.0 bits (64), Expect = 1.2
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 217 LVNLRILDLSDNQIKAIE 234
L NL LDL DN+IK IE
Sbjct: 1 LTNLEELDLGDNKIKKIE 18
>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein. The Polycystin
Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a
huge protein of 4303aas. Its repeated leucine-rich (LRR)
segment is found in many proteins. It contains 16
polycystic kidney disease (PKD) domains, one
LDL-receptor class A domain, one C-type lectin family
domain, and 16-18 putative TMSs in positions between
residues 2200 and 4100. Polycystin-L has been shown to
be a cation (Na+, K+ and Ca2+) channel that is activated
by Ca2+. Two members of the PCC family (polycystin 1 and
2) are mutated in autosomal dominant polycystic kidney
disease, and polycystin-L is deleted in mice with renal
and retinal defects. Note: this model is restricted to
the amino half for technical reasons.
Length = 2740
Score = 32.4 bits (73), Expect = 1.2
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 224 DLSDNQIKAIEEGILKGCDNLLELRMDHNRF 254
D+S+N+I IEEGI NL E+ + N F
Sbjct: 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 31.3 bits (71), Expect = 2.0
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 21/103 (20%)
Query: 606 FNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCF 665
F KF + +YL + + L++ ++ + N+I+ IS F
Sbjct: 189 FTKFYVR-DNIHNIYTYLDNSEEQQDNLESNNE------------AIYINDIN-ISGPVF 234
Query: 666 FNSSQLQIINLSFNRLEKLPERLFNTFLYTN----YDMAPNLV 704
N S L + +E LP ++ + ++Y N YD NLV
Sbjct: 235 INKSLLTSFI---DNIEYLPSKINSGYIYKNKIIAYDYLENLV 274
>gnl|CDD|227271 COG4935, COG4935, Regulatory P domain of the subtilisin-like
proprotein convertases and other proteases
[Posttranslational modification, protein turnover,
chaperones].
Length = 177
Score = 29.8 bits (67), Expect = 3.6
Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 28/101 (27%)
Query: 404 NLNVRDNQITTLSSS-----ALNYKLLT-KLDLSHNNLKELEPTAFT--NVPTLLHLNLS 455
NL + DN + T+SSS A K +T ++D++H +L T + L +L L
Sbjct: 14 NLTLPDNDLQTISSSFSVADANFIKDVTVRVDITHEYRGDLRITLISPSGQGILSNLTLG 73
Query: 456 R----------------NAHLSSLPVGGFDPLKKLEVLDLA 480
R G + +LEV DLA
Sbjct: 74 RRYDDDSQGYNDQSFMLVQLWGERAEGNW----RLEVQDLA 110
>gnl|CDD|214368 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed.
Length = 1364
Score = 30.3 bits (69), Expect = 4.5
Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Query: 330 NSDTFQGGAFNGLA-KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKL---KSLDL 385
+SD F+ G FNG K H + + NS GT + I +F + L + L
Sbjct: 937 SSDCFRIGPFNGKKSKYHNIKESNPLIPIRNSLGPLGTVLQIANFSSSYHLLTHNQILVT 996
Query: 386 NGNFLINLESTGLEDTLDNLNVRDN----QITTLSSSALNYKLLTKLDLSHNNLKE 437
L NL+ T L + +N S+ LN L L HN +E
Sbjct: 997 KYLQLDNLKQTFQVKVLKYYLIDENGKIYNPDPCSNIILNPFNLNWYFLHHNYCEE 1052
>gnl|CDD|216853 pfam02030, Lipoprotein_8, Hypothetical lipoprotein (MG045 family).
This family includes hypothetical lipoproteins, the
amino terminal part of this protein is related to
pfam01547, a family of solute binding proteins. This
suggests this family also has a solute binding function.
Length = 493
Score = 29.9 bits (67), Expect = 4.9
Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 9/119 (7%)
Query: 565 NTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQ 624
T S NT + + + SF I +K KT K + ++ + K L L+
Sbjct: 378 KTISDENTGIVGKTGFEADLKRQKKQESFEIQTKYKTEKERNHIYDTYTKTLKFLLNKND 437
Query: 625 EIDLSNNQLKTIDDYDYGYLPRLRKL-NLNNNNIDAISETCFFNSSQLQIINLSFNRLE 682
+L+N K + YL + KL + N + LQ NL + L+
Sbjct: 438 SYELNNLNKKLVSTIKKNYL--ILKLEAIFWIN------LLEKPINPLQRSNLKLSWLD 488
>gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional.
Length = 607
Score = 30.1 bits (67), Expect = 5.0
Identities = 45/211 (21%), Positives = 87/211 (41%), Gaps = 47/211 (22%)
Query: 145 SQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDS 204
+++ + + P+ + + D P R D+ + D++F D L D +
Sbjct: 113 TKKAFAYGLKPIVVINKVDRPGARPDW-------VVDQVF----DLFVNLDATD----EQ 157
Query: 205 LN-PIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLN 263
L+ PI S +G+ L D++++ L + +DH P V L+
Sbjct: 158 LDFPIVYASALNGIAGLDHEDMAEDMTP------------LYQAIVDH---VPAPDVDLD 202
Query: 264 GPRALRILSMAYNR-IGTLKADSFLSQRWLERIILRGNRLTTI---EGGAFNGLAKIHIL 319
GP ++I + YN +G + ++R ++ N+ TI EG N +
Sbjct: 203 GPFQMQISQLDYNSYVGVIGIGR------IKRGKVKPNQQVTIIDSEGKTRNAKVGKVLG 256
Query: 320 NLGYNRLNKLNSDTFQGG---AFNGLAKIHI 347
+LG L ++ +D + G A GL +++I
Sbjct: 257 HLG---LERIETDLAEAGDIVAITGLGELNI 284
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 29.8 bits (68), Expect = 6.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 434 NLKELEPTAFTNVPT 448
NL+E+ PT + NVP
Sbjct: 299 NLREISPTVYFNVPK 313
>gnl|CDD|220730 pfam10395, Utp8, Utp8 family. Utp8 is an essential component of
the nuclear tRNA export machinery in Saccharomyces
cerevisiae. It is a tRNA binding protein that acts at a
step between tRNA maturation /aminoacylation, and
translocation of the tRNA across the nuclear pore
complex.
Length = 669
Score = 29.7 bits (67), Expect = 7.7
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 527 LSNNN---IVNLRVGSL---YGLPSMKRLDLSFNKLTTFKGD---------YFNTKSKPN 571
L+ NN +++L S+ L K L N + KG +TK+ N
Sbjct: 292 LTVNNKIYLIDLLHESILSERELSHPKADQLLLNAVVPVKGQSENSKTIALGLSTKNGDN 351
Query: 572 TSSLEELNLN 581
TS L +N++
Sbjct: 352 TSYLNVINID 361
>gnl|CDD|233696 TIGR02038, protease_degS, periplasmic serine pepetdase DegS. This
family consists of the periplasmic serine protease DegS
(HhoB), a shorter paralog of protease DO (HtrA, DegP)
and DegQ (HhoA). It is found in E. coli and several
other Proteobacteria of the gamma subdivision. It
contains a trypsin domain and a single copy of PDZ
domain (in contrast to DegP with two copies). A critical
role of this DegS is to sense stress in the periplasm
and partially degrade an inhibitor of sigma(E) [Protein
fate, Degradation of proteins, peptides, and
glycopeptides, Regulatory functions, Protein
interactions].
Length = 351
Score = 29.4 bits (66), Expect = 7.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 467 GFDPLKKLEVLDLAATGLKSIPQ 489
G DPL L VL + L +IP
Sbjct: 120 GSDPLTDLAVLKIEGDNLPTIPV 142
>gnl|CDD|214639 smart00364, LRR_BAC, Leucine-rich repeats, bacterial type.
Length = 20
Score = 25.3 bits (57), Expect = 8.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 669 SQLQIINLSFNRLEKLPE 686
L+ +N+S N+L LPE
Sbjct: 2 PSLKELNVSNNQLTSLPE 19
>gnl|CDD|197686 smart00368, LRR_RI, Leucine rich repeat, ribonuclease inhibitor
type.
Length = 28
Score = 25.4 bits (57), Expect = 9.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 572 TSSLEELNLNNNELT 586
SL EL+L+NN+L
Sbjct: 1 NPSLRELDLSNNKLG 15
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.406
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,274,947
Number of extensions: 3579408
Number of successful extensions: 2936
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2753
Number of HSP's successfully gapped: 130
Length of query: 719
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 615
Effective length of database: 6,324,786
Effective search space: 3889743390
Effective search space used: 3889743390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (27.7 bits)