RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16110
(719 letters)
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 303 bits (779), Expect = 2e-93
Identities = 120/569 (21%), Positives = 220/569 (38%), Gaps = 52/569 (9%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+ LD N + +L +L L+ L L N S F NL L L
Sbjct: 51 LTSLDVGFNTISKLEPELCQKLPM-LKVLNLQHNELSQ-----LSDKTFAFCTNLTELHL 104
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
N I+ I+ NL+ L + HN +S + L+ L ++ N+I LK++
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164
Query: 286 F--LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLA 343
+ L+++ L N++ G F+ + ++ L L +L ++
Sbjct: 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL--CLELANT 222
Query: 344 KIHILNLGYNRLNKLNSDTFQGTHIT---------------IFSFFQDFQKLKSLDLNGN 388
I L+L ++L+ ++ TF G T F +L+ L N
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282
Query: 389 FLI-----------NLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLK 436
+ N+ L+ + ++ + + + K L L++ N++
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342
Query: 437 ELEPTAFTNVPTLLHLNLSRNA-HLSSLPVGGFDPL--KKLEVLDLAATGLKSIPQYQFD 493
++ FT + L +L+LS + L +L F L L +L+L + I F
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402
Query: 494 ELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS 552
L +L+ L L N + E+ ++ L N+ + LS N + L S +PS++RL L
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462
Query: 553 FNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYF 612
L + +L L+L+NN + + KL+ L L N
Sbjct: 463 RVALKNV---DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519
Query: 613 PKE--------LILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETC 664
K + GLS+L ++L +N I + L L+ ++L NN++ + +
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579
Query: 665 FFNSSQLQIINLSFNRLEKLPERLFNTFL 693
F N L+ +NL N + + +++F
Sbjct: 580 FNNQVSLKSLNLQKNLITSVEKKVFGPAF 608
Score = 297 bits (763), Expect = 4e-91
Identities = 128/565 (22%), Positives = 224/565 (39%), Gaps = 53/565 (9%)
Query: 163 DIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRI 222
+ D S L ++ D L + + L L N + F L
Sbjct: 3 TVSHEVADCSHLKLTQVPDDLPT----NITVLNLTHNQL-----RRLPAANFTRYSQLTS 53
Query: 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK 282
LD+ N I +E + + L L + HN + + + L L + N I +K
Sbjct: 54 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113
Query: 283 ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGL 342
+ F+ Q+ L + L N L++ + G L + L L N++ L S+
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD---IFAN 170
Query: 343 AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED-- 400
+ + L L N++ + + F +L L LN L + L
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHA-----------IGRLFGLFLNNVQLGPSLTEKLCLEL 219
Query: 401 ---TLDNLNVRDNQITTLSSSA---LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
++ NL++ ++Q++T S++ L + LT LDLS+NNL + +F +P L + L
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLA---------ATGLKSIPQYQFDELLNLKYLCLAH 505
N ++ L L + L+L L I + F L L++L +
Sbjct: 280 EYN-NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338
Query: 506 NHLTEIPEMMFKNLLNLTYLDLSNN--NIVNLRVGSLYGLP--SMKRLDLSFNKLTTFKG 561
N + I MF L+NL YL LSN+ ++ L + L + L+L+ NK++ +
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398
Query: 562 DYFNTKSKPNTSSLEELNLNNNELTYLFP-SSFTIHSKLKTLKLAFNKFNYFPKELILGL 620
D F+ LE L+L NE+ + + + L++NK+ + +
Sbjct: 399 DAFS-----WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453
Query: 621 SYLQEIDLSNNQLKTIDDYD--YGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSF 678
LQ + L LK +D + L L L+L+NNNI I++ +L+I++L
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513
Query: 679 NRLEKLPERLFNTFLYTNYDMAPNL 703
N L +L + +L
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHL 538
Score = 268 bits (688), Expect = 3e-80
Identities = 126/532 (23%), Positives = 210/532 (39%), Gaps = 47/532 (8%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+ LD S N L LQEL L++N + +L+ L+L
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLE-NLQELLLSNNKIQALKSEELD---IFANSSLKKLEL 178
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSL---NGPRALRILSMAYNRIGTLK 282
S NQIK G L L +++ + + L ++R LS++ +++ T
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238
Query: 283 ADSFLSQRW--LERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFN 340
+FL +W L + L N L + +F L ++ L YN + L S + G
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG---- 294
Query: 341 GLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED 400
L + LNL + + S FQ + L+ L++ N + ++S
Sbjct: 295 -LFNVRYLNLKRSFTKQSIS--LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351
Query: 401 --TLDNLNVRDN--QITTLSSSA---LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLN 453
L L++ ++ + TL++ L + L L+L+ N + ++E AF+ + L L+
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411
Query: 454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE 513
L N L + L+ + + L+ + + F + +L+ L L L +
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471
Query: 514 MM--FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPN 571
F+ L NLT LDLSNNNI N+ L GL ++ LDL N L
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR------------- 518
Query: 572 TSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN 631
L + S L L L N F+ P E+ L L+ IDL N
Sbjct: 519 --------LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570
Query: 632 QLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNS-SQLQIINLSFNRLE 682
L T+ + L+ LNL N I ++ + F + L +++ FN +
Sbjct: 571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622
Score = 244 bits (626), Expect = 2e-71
Identities = 120/529 (22%), Positives = 205/529 (38%), Gaps = 54/529 (10%)
Query: 166 IRRLDFSGNALRRLSDKLFSP-HRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILD 224
++ L S N ++ L + +L++L L+ N + FS FH + L L
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE-----FSPGCFHAIGRLFGLF 201
Query: 225 LSDNQIKA-IEEGILKGCDN--LLELRMDHNRFTSIPSVSLNG--PRALRILSMAYNRIG 279
L++ Q+ + E + N + L + +++ ++ + + G L +L ++YN +
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSD----TFQ 335
+ DSF LE L N + + + +GL + LNL + + S
Sbjct: 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321
Query: 336 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFL--INL 393
+F L + LN+ N + + S+ F G LK L L+ +F L
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTG-----------LINLKYLSLSNSFTSLRTL 370
Query: 394 ESTGLED----TLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLK-ELEPTAFTNVP 447
+ L LN+ N+I+ + S A L LDL N + EL + +
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430
Query: 448 TLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQY--QFDELLNLKYLCLAH 505
+ + LS N L F + L+ L L LK++ F L NL L L++
Sbjct: 431 NIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489
Query: 506 NHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR--------VGSLYGLPSMKRLDLSFNKLT 557
N++ I + M + L L LDL +NN+ L + L GL + L+L N
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549
Query: 558 TFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELI 617
+ F + L+ ++L N L L S F LK+L L N K++
Sbjct: 550 EIPVEVF-----KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604
Query: 618 L-GLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCF 665
L E+D+ N + + +N + NI +S
Sbjct: 605 GPAFRNLTELDMRFNPFDCTCE---SIAWFVNWINETHTNIPELSSHYL 650
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 296 bits (760), Expect = 2e-91
Identities = 117/541 (21%), Positives = 211/541 (39%), Gaps = 45/541 (8%)
Query: 163 DIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRI 222
+ + L + L + + + L + N+ ++ + F L+NL
Sbjct: 11 KEVNKTYNCENLGLNEIPGTLPN----STECLEFSFNVL-PTIQN----TTFSRLINLTF 61
Query: 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK 282
LDL+ QI I E + L L + N + +L+GP+AL+ L I ++
Sbjct: 62 LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121
Query: 283 ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGL 342
+Q+ LE + L N +++I+ K+ +L+ N ++ L+ +
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS--LQQA 179
Query: 343 AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDT- 401
+ LNL N + + F +SL+ G + + GL+++
Sbjct: 180 TNLS-LNLNGNDIAGIEPGAFDSAV------------FQSLNFGGTQNLLVIFKGLKNST 226
Query: 402 ---LDNLNVRDNQITTLSSSA---LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
L D +S + L + ++L + + F L L+L+
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHL-TEIPEM 514
HLS LP G L L+ L L+A +++ Q +L +L + N E+
Sbjct: 287 AT-HLSELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344
Query: 515 MFKNLLNLTYLDLSNNNI--VNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT 572
+NL NL LDLS+++I + L L ++ L+LS+N+ + K + F
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-----EC 399
Query: 573 SSLEELNLNNNELTYLFP-SSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN 631
LE L+L L S F LK L L+ + + ++L GL LQ ++L N
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Query: 632 QLKTIDDYDYG---YLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERL 688
+ L RL L L+ ++ +I + F + + ++LS NRL
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519
Query: 689 F 689
Sbjct: 520 L 520
Score = 286 bits (733), Expect = 1e-87
Identities = 114/552 (20%), Positives = 207/552 (37%), Gaps = 45/552 (8%)
Query: 154 LPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSE 213
+P + +S L+FS N L + + FS + L L L
Sbjct: 27 IPGTLPNS----TECLEFSFNVLPTIQNTTFSRLIN-LTFLDLTRCQIYW-----IHEDT 76
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
F L L L+ N + + E L G L L +SI + L+ + L L +
Sbjct: 77 FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHI--LNLGYNRLNKLNS 331
N I ++K L+ + + N + + + L + LNL N + +
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196
Query: 332 DTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLI 391
F A LN G + + + + I Q L
Sbjct: 197 GAFD------SAVFQSLNFGGTQNLLVIFKGLKNSTI---------QSLWLGTFEDMDDE 241
Query: 392 NLESTGLED----TLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNV 446
++ E +++++N++ + +SS+ + L +LDL+ +L EL P+ +
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-PSGLVGL 300
Query: 447 PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK-SIPQYQFDELLNLKYLCLAH 505
TL L LS N +L L L + + + + L NL+ L L+H
Sbjct: 301 STLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359
Query: 506 NHLTEIP--EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDY 563
+ + + +NL +L L+LS N ++L+ + P ++ LDL+F +L
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419
Query: 564 FNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKF---NYFPKELILGL 620
N L+ LNL+++ L F L+ L L N F N + L
Sbjct: 420 PFQ----NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475
Query: 621 SYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNR 680
L+ + LS L +ID + + L + ++L++N + + S + + +NL+ N
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNH 534
Query: 681 LEKLPERLFNTF 692
+ + L
Sbjct: 535 ISIILPSLLPIL 546
Score = 268 bits (687), Expect = 8e-81
Identities = 120/549 (21%), Positives = 200/549 (36%), Gaps = 41/549 (7%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+ LD + + + + F L L L N + + G L+ L
Sbjct: 59 LTFLDLTRCQIYWIHEDTFQSQHR-LDTLVLTANPLIF-----MAETALSGPKALKHLFF 112
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
I +I+ L L L + N +SI L++L N I L +
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172
Query: 286 F--LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLA 343
L Q + L GN + IE GAF+ LN G + + F+G + +
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSA-VFQSLNFGGTQNLLV---IFKGLKNSTIQ 228
Query: 344 KIHILNLGYNRLNKLNSDTFQG---THITIFSF------------FQDFQKLKSLDLNGN 388
+ + ++ F+G + + F F L+ LDL
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288
Query: 389 FLINLES--TGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLK-ELEPTAFT 444
L L S GL TL L + N+ L + N+ LT L + N + EL
Sbjct: 289 HLSELPSGLVGL-STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347
Query: 445 NVPTLLHLNLSRNA-HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCL 503
N+ L L+LS + S L L+ L+L+ S+ F E L+ L L
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407
Query: 504 AHNHLTEI-PEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGD 562
A L + F+NL L L+LS++ + GLP+++ L+L N
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467
Query: 563 YFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSY 622
N+ LE L L+ +L+ + +FT + + L+ N+ E + L
Sbjct: 468 KTNSLQ--TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525
Query: 623 LQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE 682
+ ++L++N + I L + R +NL N +D +F L+ + +LE
Sbjct: 526 IY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYF----LEWYKENMQKLE 580
Query: 683 KLPERLFNT 691
+ L
Sbjct: 581 DTEDTLCEN 589
Score = 217 bits (554), Expect = 6e-62
Identities = 97/497 (19%), Positives = 172/497 (34%), Gaps = 53/497 (10%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRI--L 223
+ L N + + P L+ L +N S + L L
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEK-LKVLDFQNNAIHY-----LSKEDMSSLQQATNLSL 184
Query: 224 DLSDNQIKAIEEGILKGCDNLLELRMDHNRFT--SIPSVSLNGPRALRILSMAYNRIGTL 281
+L+ N I IE G L + + + ++L + + +
Sbjct: 185 NLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243
Query: 282 KADSF--LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
F L + +E I L+ + I F+ + + L+L L++L S
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS------GL 297
Query: 340 NGLAKIHILNLGYNRLNKLNSDTFQGTH--------------ITIFSFFQDFQKLKSLDL 385
GL+ + L L N+ L + ++ + L+ LDL
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357
Query: 386 NGNFLINLESTGLEDT----LDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEP 440
+ + + + L+ L +LN+ N+ +L + A L LDL+ LK +
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417
Query: 441 -TAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA---TGLKSIPQYQFDELL 496
+ F N+ L LNLS + L FD L L+ L+L L
Sbjct: 418 QSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476
Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
L+ L L+ L+ I + F +L + ++DLS+N + + + +L L L+L+ N +
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG-IYLNLASNHI 535
Query: 557 TTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKEL 616
+ P S +NL N L + + L+ K K L
Sbjct: 536 SIILPSLL-----PILSQQRTINLRQNPLD----CTCSNIYFLEWYKENMQKLEDTEDTL 586
Query: 617 ILGLSYLQEIDLSNNQL 633
L+ + LS+ L
Sbjct: 587 CENPPLLRGVRLSDVTL 603
Score = 175 bits (446), Expect = 5e-47
Identities = 80/410 (19%), Positives = 153/410 (37%), Gaps = 49/410 (11%)
Query: 151 HQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFS 210
I P ++ + ++ + +S F LQEL L L+ +
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG-LQELDLTAT----HLSEL-- 293
Query: 211 TSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHN-RFTSIPSVSLNGPRALR 269
S GL L+ L LS N+ + + + +L L + N + + + L LR
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353
Query: 270 ILSMAYNRIGTL--KADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLN 327
L ++++ I T + L+ + L N +++ AF ++ +L+L + RL
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413
Query: 328 KLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNG 387
++ F L + +LNL ++ L+ + F G L+ L+L G
Sbjct: 414 VKDAQ----SPFQNLHLLKVLNLSHSLLDISSEQLFDGL-----------PALQHLNLQG 458
Query: 388 NFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVP 447
N + ++L L L L LS +L ++ AFT++
Sbjct: 459 NHFPKG-NIQKTNSLQTL-----------------GRLEILVLSFCDLSSIDQHAFTSLK 500
Query: 448 TLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNH 507
+ H++LS N L+S + LK + L+LA+ + I L + + L N
Sbjct: 501 MMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558
Query: 508 LTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
L ++ L + + + + P ++ + LS L+
Sbjct: 559 LDCTCSNIY----FLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604
Score = 109 bits (275), Expect = 4e-25
Identities = 32/190 (16%), Positives = 69/190 (36%), Gaps = 32/190 (16%)
Query: 503 LAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGD 562
+ L EIP + + L+ S N + ++ + L ++ LDL+ ++ D
Sbjct: 19 CENLGLNEIPGTLPNST---ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75
Query: 563 YFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSY 622
F + L+ L L N L ++ ++ + G
Sbjct: 76 TFQ-----SQHRLDTLVLTANPLIFMAETALS------------------------GPKA 106
Query: 623 LQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE 682
L+ + + +ID L L L +N+I +I F + +L++++ N +
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166
Query: 683 KLPERLFNTF 692
L + ++
Sbjct: 167 YLSKEDMSSL 176
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 275 bits (704), Expect = 3e-81
Identities = 122/555 (21%), Positives = 214/555 (38%), Gaps = 41/555 (7%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
RL S N +R ++ F LQ L L +++ F L NLRILDL
Sbjct: 26 TERLLLSFNYIRTVTASSFPFLEQ-LQLLELGSQYTPLTIDK----EAFRNLPNLRILDL 80
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTS--IPSVSLNGPRALRILSMAYNRIGTLKA 283
++I + +G +L ELR+ + + +AL L ++ N+I +L
Sbjct: 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140
Query: 284 -DSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIH--ILNLGYNRLNKLNSDTFQG--GA 338
SF L+ I N++ + L +L N L S +
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200
Query: 339 FNGLAKIHILNLGYNRLNKLNSDTF-QGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
F + + IL++ N + F + + + + + +
Sbjct: 201 FRNM-VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259
Query: 398 LED----TLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHL 452
++ +L++ + +L+S K L L+L++N + ++ AF + L L
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319
Query: 453 NLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIP 512
NLS N L L F L K+ +DL + I F L L+ L L N LT I
Sbjct: 320 NLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378
Query: 513 EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT 572
+ ++ + LS N +V L +L + + LS N+L YF
Sbjct: 379 -----FIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFLL----RV 425
Query: 573 SSLEELNLNNNELTYLFPSS-FTIHSKLKTLKLAFNKFNY-----FPKELILGLSYLQEI 626
L+ L LN N + + + L+ L L N ++ GLS+LQ +
Sbjct: 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485
Query: 627 DLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPE 686
L++N L ++ + +L LR L+LN+N + +S + L+I+++S N+L
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN--LEILDISRNQLLAPNP 543
Query: 687 RLFNTFLYTNYDMAP 701
+F + +
Sbjct: 544 DVFVSLSVLDITHNK 558
Score = 247 bits (631), Expect = 6e-71
Identities = 100/490 (20%), Positives = 180/490 (36%), Gaps = 38/490 (7%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFT-SIPSVSLNGPRALRILS 272
L L LS N I+ + + L L + +I + LRIL
Sbjct: 20 PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79
Query: 273 MAYNRIGTLKADSFLSQRWLERIILRGNRLT--TIEGGAFNGLAKIHILNLGYNRLNKLN 330
+ ++I L D+F L + L L+ ++ G F L + L+L N++ L
Sbjct: 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139
Query: 331 SDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFL 390
+F L + ++ N++ + + L L N L
Sbjct: 140 L----HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK---------TLSFFSLAANSL 186
Query: 391 INLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLL 450
+ S ++ +I +S + + N + + + + ++
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWT---VDITGNFSNAISKSQAFSLILAHHIM 243
Query: 451 HLNLSRNAHLSSLPVGGFDPLKK--LEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHL 508
+ ++ F L + + LDL+ + S+ F+ L +LK L LA+N +
Sbjct: 244 GAGFGFH-NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302
Query: 509 TEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKS 568
+I + F L NL L+LS N + L + YGLP + +DL N + + F
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK--- 359
Query: 569 KPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDL 628
L+ L+L +N LT + + + L+ NK PK + I L
Sbjct: 360 --FLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHL 408
Query: 629 SNNQLKTIDD-YDYGYLPRLRKLNLNNNNIDAISETCFF-NSSQLQIINLSFNRLEKLPE 686
S N+L+ +D Y +P L+ L LN N + S + L+ + L N L+ E
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468
Query: 687 RLFNTFLYTN 696
++
Sbjct: 469 TELCWDVFEG 478
Score = 203 bits (517), Expect = 2e-55
Identities = 104/462 (22%), Positives = 182/462 (39%), Gaps = 68/462 (14%)
Query: 166 IRRLDFSGNALRRLSDKLFSP-HRDTLQELRLADNLFGDSLNPIFSTS-EFHGLVNLRIL 223
++ +DFS N + + + P TL LA N ++ + + L IL
Sbjct: 150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209
Query: 224 DLSDNQIKAIEEGI------------LKGCDNLLELRMDHNRFTSIPSVSLNG--PRALR 269
D+S N G L +++ + + G ++R
Sbjct: 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR 269
Query: 270 ILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKL 329
L +++ + +L + F + + L+ + L N++ I AF GL + +LNL YN L +L
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329
Query: 330 NSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNF 389
S F G L K+ ++L N + + TF+ +KL++LDL N
Sbjct: 330 YSSNFYG-----LPKVAYIDLQKNHIAIIQDQTFKF-----------LEKLQTLDLRDNA 373
Query: 390 LINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAF-TNVPT 448
L + ++ ++ + N++ TL L + LS N L+ L+ F VP
Sbjct: 374 LTTIHFI---PSIPDIFLSGNKLVTLPKINLT---ANLIHLSENRLENLDILYFLLRVPH 427
Query: 449 LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHL 508
L L L++N S LE L L L+ +
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE------------------- 468
Query: 509 TEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKS 568
TE+ +F+ L +L L L++N + +L G L +++ L L+ N+LT +
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL---- 524
Query: 569 KPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFN 610
++LE L+++ N+L P F L L + NKF
Sbjct: 525 ---PANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFI 560
Score = 180 bits (457), Expect = 1e-47
Identities = 89/408 (21%), Positives = 143/408 (35%), Gaps = 60/408 (14%)
Query: 160 SSSDIPIRRLDFSGNALRRLSDKLFS--PHRDTLQELRLADNLFGDSLNP----IFSTSE 213
++ + LD SGN FS + L LA ++ G +
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259
Query: 214 FHGLV--NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRIL 271
F GL ++R LDLS + ++ + + +L L + +N+ I + G L++L
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319
Query: 272 SMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNS 331
+++YN +G L + +F + I L+ N + I+ F L K+ L+L N L +
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-- 377
Query: 332 DTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLI 391
+ + I + L N+L L + L+ N L
Sbjct: 378 --------HFIPSIPDIFLSGNKLVTLPKINLTANL---------------IHLSENRLE 414
Query: 392 NLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTA-FTNVPTLL 450
NL+ L L L L+ N + P+L
Sbjct: 415 NLDI--------------------LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLE 454
Query: 451 HLNLSRN----AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
L L N A + L F+ L L+VL L L S+P F L L+ L L N
Sbjct: 455 QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514
Query: 507 HLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
LT + NL LD+S N ++ L + F
Sbjct: 515 RLTVLSHNDLPA--NLEILDISRNQLLAPNPDVFVSLSVLDITHNKFI 560
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 268 bits (688), Expect = 6e-81
Identities = 107/562 (19%), Positives = 205/562 (36%), Gaps = 53/562 (9%)
Query: 160 SSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
+P L ++ D + S + + + L+ N L F
Sbjct: 7 CIEVVPNITYQCMDQKLSKVPDDIPS----STKNIDLSFNPL-KILKS----YSFSNFSE 57
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
L+ LDLS +I+ IE+ G +L L + N S S +G +L L ++
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIE-GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGA 338
+L++ L+++ + N + + + F+ L + ++L YN + + + Q
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-L 176
Query: 339 FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIF-------------SFFQDFQKLKSLDL 385
L++ N ++ + FQG + + Q+ L L
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236
Query: 386 NGNFL-----INLESTGLEDTLDNLNVRD-----NQITTLSSSAL-NYKLLTKLDLSHNN 434
+ + + + L ++ + + + ++ + L+ +
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296
Query: 435 LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDE 494
+K LE L++ R L P L L+ L L +
Sbjct: 297 IKYLEDVPKHF--KWQSLSIIRC-QLKQFP---TLDLPFLKSLTLTMNKGSISFK--KVA 348
Query: 495 LLNLKYLCLAHNHLTEIPEMMFKNL--LNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS 552
L +L YL L+ N L+ + +L +L +LDLS N + + GL ++ LD
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQ 407
Query: 553 FNKLTTF-KGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNY 611
+ L + F + L L+++ F F + L TLK+A N F
Sbjct: 408 HSTLKRVTEFSAFL-----SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462
Query: 612 F-PKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQ 670
+ + L +DLS QL+ I + L RL+ LN+++NN+ + + +
Sbjct: 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522
Query: 671 LQIINLSFNRLEKLPERLFNTF 692
L ++ SFNR+E L +
Sbjct: 523 LSTLDCSFNRIETSKGILQHFP 544
Score = 266 bits (681), Expect = 5e-80
Identities = 119/544 (21%), Positives = 200/544 (36%), Gaps = 54/544 (9%)
Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
+ LD S + + DK + L L L N FS F GL +L L
Sbjct: 59 QWLDLSRCEIETIEDKAWHGLHH-LSNLILTGNPIQS-----FSPGSFSGLTSLENLVAV 112
Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIP-SVSLNGPRALRILSMAYNRIGTLKADS 285
+ ++ ++E + L +L + HN S + L + ++YN I T+ +
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172
Query: 286 F----LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG 341
+ + + + N + I+ AF G+ K+H L L N S
Sbjct: 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFN----SSNIMKTCLQN 227
Query: 342 LAKIHILNLGYNRLNKLNS------DTFQG-----------THITIFS----FFQDFQKL 380
LA +H+ L + +G T+ FS F +
Sbjct: 228 LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287
Query: 381 KSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEP 440
++ L G + LE +L++ Q+ + L + L L L+ N
Sbjct: 288 SAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF--LKSLTLTMNKGSISFK 345
Query: 441 TAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLK--KLEVLDLAATGLKSIPQYQFDELLNL 498
+P+L +L+LSRN LS + L L LDL+ G + F L L
Sbjct: 346 --KVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA-NFMGLEEL 401
Query: 499 KYLCLAHNHLTEIPEM-MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
++L H+ L + E F +L L YLD+S N G GL S+ L ++ N
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461
Query: 558 TFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELI 617
NT++L L+L+ +L + F +L+ L ++ N +
Sbjct: 462 DNTLSNVFA----NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517
Query: 618 LGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFF----NSSQLQI 673
L L +D S N+++T + L NL NN++ I E F + +
Sbjct: 518 NQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFL 577
Query: 674 INLS 677
+N+
Sbjct: 578 VNVE 581
Score = 173 bits (440), Expect = 3e-46
Identities = 69/409 (16%), Positives = 125/409 (30%), Gaps = 58/409 (14%)
Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
+L+ + + ++L +N L L S +F+ +++ L+L +
Sbjct: 18 CMDQKLSKVPDDIPSST---KNIDLSFNPLKILKSY-----SFSNFSELQWLDLSRCEIE 69
Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
+ + G L +L L GN + + + L
Sbjct: 70 TIEDKAWHG-----------LHHLSNLILTGNPIQSFS----PGSFSGL----------- 103
Query: 417 SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGG-FDPLKKLE 475
L L L LE + TL LN++ N + S + F L L
Sbjct: 104 ------TSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLV 156
Query: 476 VLDLAATGLKSIPQYQFDELLNLK----YLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNN 531
+DL+ +++I L L ++ N + I + F+ + L L L N
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNF 215
Query: 532 -IVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT---SSLEELNLNNNELTY 587
N+ L L + L + + S +++E L
Sbjct: 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275
Query: 588 LFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRL 647
F + + + LA Y + Q + + QLK D LP L
Sbjct: 276 DDIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQFPTLD---LPFL 330
Query: 648 RKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTN 696
+ L L N + L ++LS N L ++ +
Sbjct: 331 KSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377
Score = 169 bits (431), Expect = 4e-45
Identities = 56/301 (18%), Positives = 114/301 (37%), Gaps = 15/301 (4%)
Query: 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLP 464
D +++ + + +DLS N LK L+ +F+N L L+LSR + ++
Sbjct: 16 YQCMDQKLSKVPDDIPSS--TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIE 72
Query: 465 VGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTY 524
+ L L L L ++S F L +L+ L L + L+ L
Sbjct: 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132
Query: 525 LDLSNNNIVNLRV-GSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
L++++N I + ++ L ++ +DLS+N + T + + N L+++ N
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE-NPQVNLSLDMSLN 191
Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFNYF-PKELILGLSYLQEIDLS------NNQLKTI 636
+ ++ +F KL L L N + K + L+ L L L+
Sbjct: 192 PIDFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250
Query: 637 DDYDYGYLPRLRK--LNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLY 694
+ L + L N + F + + ++L+ ++ L + +
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQ 310
Query: 695 T 695
+
Sbjct: 311 S 311
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 247 bits (633), Expect = 1e-73
Identities = 100/516 (19%), Positives = 186/516 (36%), Gaps = 46/516 (8%)
Query: 162 SDIP--IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
S + ++ LD S N + + + LQ L L + F+ L +
Sbjct: 22 SGLTAAMKSLDLSFNKITYIGHGDLRACAN-LQVLILKSSRINT-----IEGDAFYSLGS 75
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSL-NGPRALRILSMA-YNR 277
L LDLSDN + ++ +L L + N + ++ SL L+ L +
Sbjct: 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135
Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
++ F L + ++ L + + + IH L L + L
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE-----I 190
Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
+ L+ + L L L + ++ F+ D + N L+ L
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250
Query: 398 LEDT-LDNLNVRDNQITTLSS---------SALNYKLLTKLDLSHNNLKELEPTAFTNVP 447
LE + ++ + N + + + + +L + L T ++ +
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310
Query: 448 TLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQ---FDELLNLKYLCLA 504
+ + + + + +P LK LE LDL+ + +L+ L L+
Sbjct: 311 KVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369
Query: 505 HNHLTEIPEM--MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGD 562
NHL + + + L NLT LD+S N + S M+ L+LS + K
Sbjct: 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DSCQWPEKMRFLNLSSTGIRVVKTC 428
Query: 563 YFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSY 622
+LE L+++NN L +L+ L ++ NK P +
Sbjct: 429 IP--------QTLEVLDVSNNNLDSFSLFL----PRLQELYISRNKLKTLPDASL--FPV 474
Query: 623 LQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
L + +S NQLK++ D + L L+K+ L+ N D
Sbjct: 475 LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
Score = 227 bits (581), Expect = 3e-66
Identities = 91/493 (18%), Positives = 180/493 (36%), Gaps = 51/493 (10%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
+ D +I G+ + L + N+ T I L L++L + +RI
Sbjct: 7 SGVCDGRSRSFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
T++ D+F S LE + L N L+++ F L+ + LNL N L F
Sbjct: 64 TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT----SLF 119
Query: 340 NGLAKIHILNLG-YNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGL 398
L + L +G +++ F G L L++ L N +S L
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAG-----------LTSLNELEIKALSLRNYQSQSL 168
Query: 399 ED--TLDNLNVRDNQITTLSSSALNY-KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
+ + +L + ++ L + + L+L NL + + +
Sbjct: 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228
Query: 456 RNAHLS-----------------SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNL 498
L FD + D + + + E + +
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288
Query: 499 KYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558
+ L + +L ++ L + + + N+ + + L S++ LDLS N +
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348
Query: 559 FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHS--KLKTLKLAFNKFNYFPKEL 616
N+ K SL+ L L+ N L + + + + L +L ++ N F+ P
Sbjct: 349 EYLK--NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS- 405
Query: 617 ILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINL 676
++ ++LS+ ++ + L L+++NNN+D+ S +LQ + +
Sbjct: 406 CQWPEKMRFLNLSSTGIRVVKT---CIPQTLEVLDVSNNNLDSFSL----FLPRLQELYI 458
Query: 677 SFNRLEKLPERLF 689
S N+L+ LP+
Sbjct: 459 SRNKLKTLPDASL 471
Score = 203 bits (518), Expect = 2e-57
Identities = 84/456 (18%), Positives = 162/456 (35%), Gaps = 57/456 (12%)
Query: 241 CDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGN 300
CD FTSIPS A++ L +++N+I + + L+ +IL+ +
Sbjct: 4 CDASGVCDGRSRSFTSIPS---GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60
Query: 301 RLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNS 360
R+ TIEG AF L + L+L N L+ L+S F L+ + LNL N
Sbjct: 61 RINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-----SWFGPLSSLKYLNLMGNPY----- 110
Query: 361 DTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL 420
+ + S F + L++L + + +
Sbjct: 111 -----QTLGVTSLFPNLTNLQTLRIGNV---------------------ETFSEIRRIDF 144
Query: 421 NY-KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
L +L++ +L+ + + ++ + HL L + + L D L + L+L
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLEL 203
Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539
T L + + + + F LL L L + +
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV------E 257
Query: 540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKL 599
D + ++ K T ++ L++ L Y + +++ K+
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSEL-----GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312
Query: 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTI---DDYDYGYLPRLRKLNLNNNN 656
K + + +K P L L+ +DLS N + + G P L+ L L+ N+
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372
Query: 657 IDAISETC--FFNSSQLQIINLSFNRLEKLPERLFN 690
+ ++ +T L +++S N +P+
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW 408
Score = 137 bits (347), Expect = 2e-34
Identities = 47/243 (19%), Positives = 91/243 (37%), Gaps = 9/243 (3%)
Query: 452 LNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEI 511
+ +S+P G ++ LDL+ + I NL+ L L + + I
Sbjct: 10 CDGRSR-SFTSIPSGLTA---AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65
Query: 512 PEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPN 571
F +L +L +LDLS+N++ +L L S+K L+L N T PN
Sbjct: 66 EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF----PN 121
Query: 572 TSSLEELNL-NNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSN 630
++L+ L + N + + F + L L++ + + + + + + L
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181
Query: 631 NQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
++ + + L +R L L + N+ + + R L + FN
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241
Query: 691 TFL 693
L
Sbjct: 242 ELL 244
Score = 120 bits (302), Expect = 1e-28
Identities = 43/289 (14%), Positives = 99/289 (34%), Gaps = 35/289 (12%)
Query: 153 ILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTS 212
IL + D + L + + +L T++ L + L+ ++S
Sbjct: 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS-- 307
Query: 213 EFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIP---SVSLNGPRALR 269
L ++ + + ++++ + + +L L + N S +L+
Sbjct: 308 ---LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364
Query: 270 ILSMAYNRIGTLK--ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLN 327
L ++ N + +++ + L+ + L + + N + K+ LNL +
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIR 423
Query: 328 KLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNG 387
+ + Q + +L++ N L+ SF +L+ L ++
Sbjct: 424 VVKTCIPQ--------TLEVLDVSNNNLD---------------SFSLFLPRLQELYISR 460
Query: 388 NFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNL 435
N L L L L + + NQ+ ++ L K+ L N
Sbjct: 461 NKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 244 bits (625), Expect = 2e-72
Identities = 104/541 (19%), Positives = 206/541 (38%), Gaps = 40/541 (7%)
Query: 163 DIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRI 222
+P ++ D L + + L L+ N L F L++
Sbjct: 6 VVPNITYQCMELNFYKIPDNLPF----STKNLDLSFNPL-RHLGS----YSFFSFPELQV 56
Query: 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK 282
LDLS +I+ IE+G + +L L + N S+ + +G +L+ L + +L+
Sbjct: 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 283 ADSFLSQRWLERIILRGNRLTTIE-GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG 341
+ L+ + + N + + + F+ L + L+L N++ + +
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
Query: 342 LAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDT 401
L + L+L N +N + F+ + + +F SL++ + L +
Sbjct: 177 LLNLS-LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD---SLNVMKTCIQGLAGLEVHRL 232
Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELE------PTAFTNVPTLLHLNLS 455
+ + + SAL L L + L L+ F + + +L
Sbjct: 233 VLGEFRNEGNLEKFDKSALEG--LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
+ LE+++ Q+ +L +LK L N
Sbjct: 291 SVTIERVKDFSYNFGWQHLELVNC------KFGQFPTLKLKSLKRLTFTSNKGGNAFS-- 342
Query: 516 FKNLLNLTYLDLSNNNI--VNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTS 573
+L +L +LDLS N + S +G S+K LDLSFN + T ++
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF------LGLE 396
Query: 574 SLEELNLNNNELTYLFPSSFTIH-SKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
LE L+ ++ L + S + L L ++ + GLS L+ + ++ N
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 633 LK-TIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT 691
+ + L L L+L+ ++ +S T F + S LQ++N++ N+L+ +P+ +F+
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516
Query: 692 F 692
Sbjct: 517 L 517
Score = 236 bits (605), Expect = 2e-69
Identities = 106/497 (21%), Positives = 185/497 (37%), Gaps = 51/497 (10%)
Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
+ LD S ++ + D + L L L N + F GL +L+ L
Sbjct: 55 QVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQS-----LALGAFSGLSSLQKLVAV 108
Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIP-SVSLNGPRALRILSMAYNRIGTLKADS 285
+ + ++E + L EL + HN S + L L ++ N+I ++
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Query: 286 FLSQRWLE----RIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG 341
+ + L N + I+ GAF + ++H L L N S G
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFD----SLNVMKTCIQG 223
Query: 342 LAKIHILNL------GYNRLNKLNSDTFQG----------------THITIFSFFQDFQK 379
LA + + L L K + +G I F
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283
Query: 380 LKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELE 439
+ S L + ++ +L + + + + L L +L + N
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS--LKRLTFTSNKGGNA- 340
Query: 440 PTAFTNVPTLLHLNLSRNA-HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNL 498
+ ++P+L L+LSRN L+ LDL+ G+ ++ F L L
Sbjct: 341 -FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQL 398
Query: 499 KYLCLAHNHLTEIPEM-MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
++L H++L ++ E +F +L NL YLD+S+ + G GL S++ L ++ N
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458
Query: 558 -TFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKEL 616
F D F +L L+L+ +L L P++F S L+ L +A N+ P +
Sbjct: 459 ENFLPDIFT-----ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513
Query: 617 ILGLSYLQEIDLSNNQL 633
L+ LQ+I L N
Sbjct: 514 FDRLTSLQKIWLHTNPW 530
Score = 166 bits (421), Expect = 6e-44
Identities = 75/386 (19%), Positives = 137/386 (35%), Gaps = 39/386 (10%)
Query: 159 FSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLV 218
+ LD S N + + F R L +L L +N ++ GL
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIR--LHKLTLRNNFDSLNVMKTC----IQGLA 225
Query: 219 NLRILDL------SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSV---SLNGPRALR 269
L + L ++ ++ ++ L+G NL N +
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285
Query: 270 ILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKL 329
S+ I +K S+ + + L + L + L N+
Sbjct: 286 SFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFPTLKLKSLKR---LTFTSNKGGNA 340
Query: 330 NSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNF 389
S L + L+L N L+ + LK LDL+ N
Sbjct: 341 FS-------EVDLPSLEFLDLSRNGLSFKGCCSQS---------DFGTTSLKYLDLSFNG 384
Query: 390 LINLESTGLEDT-LDNLNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNV 446
+I + S L L++L+ + + + +S ++ L L LD+SH + + F +
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 447 PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
+L L ++ N+ + F L+ L LDL+ L+ + F+ L +L+ L +A N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 507 HLTEIPEMMFKNLLNLTYLDLSNNNI 532
L +P+ +F L +L + L N
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTNPW 530
Score = 152 bits (385), Expect = 3e-39
Identities = 74/347 (21%), Positives = 127/347 (36%), Gaps = 41/347 (11%)
Query: 381 KSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELE 439
+ + L + NL++ N + L S + ++ L LDLS ++ +E
Sbjct: 10 ITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68
Query: 440 PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLK 499
A+ ++ L L L+ N + SL +G F L L+ L T L S+ + L LK
Sbjct: 69 DGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127
Query: 500 YLCLAHNHLTEIPE-MMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK----RLDLSFN 554
L +AHN + F NL NL +LDLS+N I ++ L L M LDLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187
Query: 555 KLTTFKGDYF--------------NTKSKPNT-----SSLEELNL------NNNELTYLF 589
+ + F ++ + T + LE L N L
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247
Query: 590 PSSFTIHSKLKTLKLAFNKFNYFPKELIL---GLSYLQEIDLSNNQLKTIDDYDYGYLPR 646
S+ L + +Y+ ++I L+ + L + ++ + D+ Y
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFG 305
Query: 647 LRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL 693
+ L L N + L+ + + N+ + L
Sbjct: 306 WQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFSEVDLPSL 349
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 239 bits (613), Expect = 3e-70
Identities = 107/522 (20%), Positives = 188/522 (36%), Gaps = 50/522 (9%)
Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
+ LD S ++ + D + L L L N + F GL +L+ L
Sbjct: 55 QVLDLSRCEIQTIEDGAYQSLSH-LSTLILTGNPIQS-----LALGAFSGLSSLQKLVAV 108
Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIP-SVSLNGPRALRILSMAYNRIGTLKADS 285
+ + ++E + L EL + HN S + L L ++ N+I ++
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Query: 286 FLS----QRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG 341
+ L N + I+ GAF + ++H L L N S G
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFD----SLNVMKTCIQG 223
Query: 342 LAKIHILNLGYNRLN------KLNSDTFQG----------------THITIFSFFQDFQK 379
LA + + L K + +G I F
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283
Query: 380 LKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELE 439
+ S L + ++ +L + + + + L + L+ + K
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL----KSLKRLTFTSNKGGN 339
Query: 440 PTAFTNVPTLLHLNLSRNAH-LSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNL 498
+ ++P+L L+LSRN L+ LDL+ G+ ++ F L L
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQL 398
Query: 499 KYLCLAHNHLTE-IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
++L H++L + +F +L NL YLD+S+ + G GL S++ L ++ N
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458
Query: 558 TFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELI 617
F +L L+L+ +L L P++F S L+ L ++ N F
Sbjct: 459 EN----FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514
Query: 618 LGLSYLQEIDLSNNQLKTIDDYDYGYLPR-LRKLNLNNNNID 658
L+ LQ +D S N + T + + P L LNL N+
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 239 bits (612), Expect = 5e-70
Identities = 104/560 (18%), Positives = 203/560 (36%), Gaps = 52/560 (9%)
Query: 163 DIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRI 222
+P ++ D L + + L L+ N + F L++
Sbjct: 6 VVPNITYQCMELNFYKIPDNLPF----STKNLDLSFNPLRHLGS-----YSFFSFPELQV 56
Query: 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK 282
LDLS +I+ IE+G + +L L + N S+ + +G +L+ L + +L+
Sbjct: 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 283 ADSFLSQRWLERIILRGNRLTTIE-GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG 341
+ L+ + + N + + + F+ L + L+L N++ + +
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
Query: 342 LAKIHILNLGYNRLNKLNSDTFQGTHITIF-------------SFFQDFQKLKSLDLNGN 388
L + L+L N +N + F+ + + Q L+ L
Sbjct: 177 LLNLS-LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235
Query: 389 FLINLE-----STGLEDTLDNLNVRDNQITTLSSSAL-------NYKLLTKLDLSHNNLK 436
N + L NL + + ++ L ++ L ++
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295
Query: 437 ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELL 496
++ F+ HL L P LK+L S +L
Sbjct: 296 RVKD--FSYNFGWQHLELVNC-KFGQFPTLKLKSLKRLTFTSNKGGNAFS-----EVDLP 347
Query: 497 NLKYLCLAHNHLT--EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
+L++L L+ N L+ +L YLDLS N ++ + L GL ++ LD +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHS 406
Query: 555 KLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNY-FP 613
L + +L L++++ F F S L+ LK+A N F F
Sbjct: 407 NLKQMSEFSVFL----SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 614 KELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQI 673
++ L L +DLS QL+ + + L L+ LN+++NN ++ + + LQ+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522
Query: 674 INLSFNRLEKLPERLFNTFL 693
++ S N + ++ F
Sbjct: 523 LDYSLNHIMTSKKQELQHFP 542
Score = 167 bits (426), Expect = 2e-44
Identities = 81/412 (19%), Positives = 150/412 (36%), Gaps = 40/412 (9%)
Query: 159 FSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLV 218
+ LD S N + + F R L +L L +N ++ GL
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIR--LHKLTLRNNFDSLNVMKTC----IQGLA 225
Query: 219 NLRILDLSDNQIK---AIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRA------LR 269
L + L + + +E+ + L L ++ R + + +
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285
Query: 270 ILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKL 329
S+ I +K S+ + + L + L + L N+
Sbjct: 286 SFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFPTLKLKSLKR---LTFTSNKGGNA 340
Query: 330 NSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNF 389
S L + L+L N L+ LK LDL+ N
Sbjct: 341 FS-------EVDLPSLEFLDLSRNGLSFKGC---------CSQSDFGTTSLKYLDLSFNG 384
Query: 390 LINLESTGLEDT-LDNLNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNV 446
+I + S L L++L+ + + + +S ++ L L LD+SH + + F +
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 447 PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
+L L ++ N+ + F L+ L LDL+ L+ + F+ L +L+ L ++HN
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Query: 507 HLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP-SMKRLDLSFNKLT 557
+ + +K L +L LD S N+I+ + L P S+ L+L+ N
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 157 bits (399), Expect = 8e-41
Identities = 75/317 (23%), Positives = 127/317 (40%), Gaps = 25/317 (7%)
Query: 397 GLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
L + NL++ N + L S + ++ L LDLS ++ +E A+ ++ L L L+
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE-M 514
N + SL +G F L L+ L T L S+ + L LK L +AHN +
Sbjct: 85 GN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143
Query: 515 MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK----RLDLSFNKLTTFKGDYFNTKSKP 570
F NL NL +LDLS+N I ++ L L M LDLS N + + F
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE---- 199
Query: 571 NTSSLEELNLNNNELTY-LFPSSFTIHSKLKTLKLAFNKF---NYFPKELILGLSYLQEI 626
L +L L NN + + + + L+ +L +F K L L +
Sbjct: 200 --IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257
Query: 627 DLSNNQLKTIDDYD------YGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNR 680
+ +L +D Y + L + +L + I+ + + F + Q + L +
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCK 315
Query: 681 LEKLPERLFNTFLYTNY 697
+ P + +
Sbjct: 316 FGQFPTLKLKSLKRLTF 332
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 230 bits (588), Expect = 6e-68
Identities = 74/310 (23%), Positives = 134/310 (43%), Gaps = 8/310 (2%)
Query: 381 KSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELE 439
+++ + + + G+ L++ N+I TL+ ++ L +L+L+ N + +E
Sbjct: 14 RAVLCHRKRFVAV-PEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72
Query: 440 PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLK 499
P AF N+ L L L N L +P+G F L L LD++ + + Y F +L NLK
Sbjct: 73 PGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131
Query: 500 YLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTF 559
L + N L I F L +L L L N+ ++ +L L + L L +
Sbjct: 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191
Query: 560 KGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILG 619
+ F L+ L +++ + L +L + P +
Sbjct: 192 RDYSFK-----RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246
Query: 620 LSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679
L YL+ ++LS N + TI+ L RL+++ L + + F + L+++N+S N
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306
Query: 680 RLEKLPERLF 689
+L L E +F
Sbjct: 307 QLTTLEESVF 316
Score = 224 bits (574), Expect = 6e-66
Identities = 93/362 (25%), Positives = 151/362 (41%), Gaps = 48/362 (13%)
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
RF ++P P R+L + NRI TL D F S LE + L N ++ +E GA
Sbjct: 19 HRKRFVAVPE---GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA 75
Query: 310 FNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHIT 369
FN L + L L NRL + F G L+ + L++ N++ L FQ +
Sbjct: 76 FNNLFNLRTLGLRSNRLKLIPLGVFTG-----LSNLTKLDISENKIVILLDYMFQDLY-- 128
Query: 370 IFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKL 428
LKSL++ DN + +S A L +L
Sbjct: 129 ---------NLKSLEVG----------------------DNDLVYISHRAFSGLNSLEQL 157
Query: 429 DLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP 488
L NL + A +++ L+ L L +++++ F L +L+VL+++
Sbjct: 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTM 216
Query: 489 QYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKR 548
LNL L + H +LT +P + ++L+ L +L+LS N I + L+ L ++
Sbjct: 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276
Query: 549 LDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNK 608
+ L +L + F + L LN++ N+LT L S F L+TL L N
Sbjct: 277 IQLVGGQLAVVEPYAFR-----GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331
Query: 609 FN 610
Sbjct: 332 LA 333
Score = 223 bits (569), Expect = 3e-65
Identities = 84/371 (22%), Positives = 146/371 (39%), Gaps = 47/371 (12%)
Query: 163 DIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRI 222
R + + + + + + L L N +LN EF +L
Sbjct: 10 SAQDRAVLCHRKRFVAVPEGIPT----ETRLLDLGKNRIK-TLNQ----DEFASFPHLEE 60
Query: 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK 282
L+L++N + A+E G NL L + NR IP G L L ++ N+I L
Sbjct: 61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL 120
Query: 283 ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGL 342
F L+ + + N L I AF+GL + L L L + + A + L
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-----EALSHL 175
Query: 343 AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTL 402
+ +L L + +N + +F+ + +LK L+++
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLY-----------RLKVLEISHW-------------- 210
Query: 403 DNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSS 462
+ T++ + L LT L ++H NL + A ++ L LNLS N +S+
Sbjct: 211 -------PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PIST 262
Query: 463 LPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNL 522
+ L +L+ + L L + Y F L L+ L ++ N LT + E +F ++ NL
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322
Query: 523 TYLDLSNNNIV 533
L L +N +
Sbjct: 323 ETLILDSNPLA 333
Score = 211 bits (538), Expect = 7e-61
Identities = 79/305 (25%), Positives = 127/305 (41%), Gaps = 9/305 (2%)
Query: 380 LKSLDLNGNFLINLESTGLEDT--LDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLK 436
+ LDL N + L L+ L + +N ++ + A N L L L N LK
Sbjct: 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 437 ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELL 496
+ FT + L L++S N + L F L L+ L++ L I F L
Sbjct: 94 LIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152
Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
+L+ L L +LT IP +L L L L + NI +R S L +K L++S
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 557 TTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKEL 616
+L L++ + LT + + L+ L L++N + +
Sbjct: 213 LDTMTPNCL-----YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267
Query: 617 ILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINL 676
+ L LQEI L QL ++ Y + L LR LN++ N + + E+ F + L+ + L
Sbjct: 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327
Query: 677 SFNRL 681
N L
Sbjct: 328 DSNPL 332
Score = 165 bits (420), Expect = 1e-44
Identities = 53/235 (22%), Positives = 100/235 (42%), Gaps = 8/235 (3%)
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
++P G + +LDL +K++ Q +F +L+ L L N ++ +
Sbjct: 19 HRKRFVAVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA 75
Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSL 575
F NL NL L L +N + + +G GL ++ +LD+S NK+ F + +L
Sbjct: 76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ-----DLYNL 130
Query: 576 EELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKT 635
+ L + +N+L Y+ +F+ + L+ L L P E + L L + L + +
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190
Query: 636 IDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
I DY + L RL+ L +++ L ++++ L +P
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245
Score = 138 bits (350), Expect = 4e-35
Identities = 36/215 (16%), Positives = 77/215 (35%), Gaps = 32/215 (14%)
Query: 476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL 535
+ ++P+ + L L N + + + F + +L L+L+ N + +
Sbjct: 15 AVLCHRKRFVAVPE---GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71
Query: 536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTI 595
G+ L +++ L L N+L F S+L +L+++ N++ L F
Sbjct: 72 EPGAFNNLFNLRTLGLRSNRLKLIPLGVFT-----GLSNLTKLDISENKIVILLDYMFQ- 125
Query: 596 HSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
L L+ +++ +N L I + L L +L L
Sbjct: 126 -----------------------DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 656 NIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
N+ +I + L ++ L + + + F
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 213 bits (545), Expect = 8e-63
Identities = 81/376 (21%), Positives = 147/376 (39%), Gaps = 32/376 (8%)
Query: 182 KLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGC 241
+ + + D ++ E L N +I+ ++ ++ + +L
Sbjct: 9 EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 68
Query: 242 DNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNR 301
+ L ++ + I + + ++ L M +N I L F + L ++L N
Sbjct: 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128
Query: 302 LTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSD 361
L+++ G F+ K+ L++ N L ++ DTFQ + L L NRL ++
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-----ATTSLQNLQLSSNRLTHVD-- 181
Query: 362 TFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALN 421
L +++ N L L ++ L+ N I +
Sbjct: 182 ------------LSLIPSLFHANVSYNLLSTLAI---PIAVEELDASHNSINVVRGPVNV 226
Query: 422 YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA 481
LT L L HNNL + N P L+ ++LS N L + F +++LE L ++
Sbjct: 227 E--LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISN 281
Query: 482 TGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLY 541
L ++ Y + LK L L+HNHL + L L L +N+IV L++ +
Sbjct: 282 NRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLST-- 337
Query: 542 GLPSMKRLDLSFNKLT 557
++K L LS N
Sbjct: 338 -HHTLKNLTLSHNDWD 352
Score = 191 bits (486), Expect = 2e-54
Identities = 80/367 (21%), Positives = 145/367 (39%), Gaps = 38/367 (10%)
Query: 319 LNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQ 378
++ D + G L I+ + + KL + F+
Sbjct: 21 CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS-----------FR 69
Query: 379 KLKSLDLNGNFLINLESTGLED--TLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNL 435
+++ L+LN + +++ T+ L + N I L N LLT L L N+L
Sbjct: 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129
Query: 436 KELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDEL 495
L F N P L L++S N +L + F L+ L L++ L + +
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLI 185
Query: 496 LNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK 555
+L + +++N L+ + + + LD S+N+I +R L L L N
Sbjct: 186 PSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVNVEL---TILKLQHNN 237
Query: 556 LTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKE 615
LT +T N L E++L+ NEL + F +L+ L ++ N+
Sbjct: 238 LT-------DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-L 289
Query: 616 LILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIIN 675
+ L+ +DLS+N L ++ + RL L L++N+I + + L+ +
Sbjct: 290 YGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTLKLSTHHT---LKNLT 345
Query: 676 LSFNRLE 682
LS N +
Sbjct: 346 LSHNDWD 352
Score = 184 bits (468), Expect = 8e-52
Identities = 57/293 (19%), Positives = 109/293 (37%), Gaps = 25/293 (8%)
Query: 404 NLNVRDNQITTLSSSA------LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
+ D I + + + ++ +++L + + LNL+
Sbjct: 20 DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79
Query: 458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK 517
+ + F ++ L + ++ +P + F + L L L N L+ +P +F
Sbjct: 80 -QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 138
Query: 518 NLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEE 577
N LT L +SNNN+ + + S++ L LS N+LT SL
Sbjct: 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI--------PSLFH 190
Query: 578 LNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTID 637
N++ N L+ + I ++ L + N N + L + L +N L
Sbjct: 191 ANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDTA 242
Query: 638 DYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
P L +++L+ N ++ I F +L+ + +S NRL L
Sbjct: 243 WL--LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP 293
Score = 183 bits (467), Expect = 1e-51
Identities = 75/422 (17%), Positives = 146/422 (34%), Gaps = 68/422 (16%)
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
+ I S +L + + ++ + + + + + +
Sbjct: 6 RQPEYKCIDS-NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL 64
Query: 310 FNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHIT 369
+ ++ +LNL ++ ++++ AF I L +G+N + L FQ
Sbjct: 65 LDSFRQVELLNLNDLQIEEIDT-----YAFAYAHTIQKLYMGFNAIRYLPPHVFQNV--- 116
Query: 370 IFSFFQDFQKLKSLDLNGNFLINLESTGLED--TLDNLNVRDNQITTLSSSAL-NYKLLT 426
L L L N L +L + L L++ +N + + L
Sbjct: 117 --------PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168
Query: 427 KLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKS 486
L LS N L ++ + + L H N+S N LS+L +E LD + +
Sbjct: 169 NLQLSSNRLTHVDLSLIPS---LFHANVSYN-LLSTLA-----IPIAVEELDASHNSINV 219
Query: 487 IPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM 546
+ + L L L HN+LT+ N L +DLS N + + + +
Sbjct: 220 VRGPVN---VELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274
Query: 547 KRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAF 606
+RL +S N+L +L+ L+L++N L ++ +
Sbjct: 275 ERLYISNNRLVALNLYGQ------PIPTLKVLDLSHNHLLHVERNQP------------- 315
Query: 607 NKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFF 666
L+ + L +N + T+ L+ L L++N+ D S F
Sbjct: 316 ------------QFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDCNSLRALF 360
Query: 667 NS 668
+
Sbjct: 361 RN 362
Score = 167 bits (425), Expect = 6e-46
Identities = 60/287 (20%), Positives = 116/287 (40%), Gaps = 19/287 (6%)
Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
N+ R + + S+ + + + + + + + L
Sbjct: 2 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKL 60
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
P D +++E+L+L ++ I Y F ++ L + N + +P +F+N+ LT
Sbjct: 61 PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120
Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
L L N++ +L G + P + L +S N L + D F T+SL+ L L++N
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-----ATTSLQNLQLSSN 175
Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGY 643
LT++ S L +++N + ++E+D S+N + +
Sbjct: 176 RLTHVDLSLIP---SLFHANVSYNLLSTLAI-----PIAVEELDASHNSINVVRG---PV 224
Query: 644 LPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
L L L +NN+ + N L ++LS+N LEK+ F
Sbjct: 225 NVELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFV 269
Score = 110 bits (276), Expect = 4e-26
Identities = 51/261 (19%), Positives = 87/261 (33%), Gaps = 40/261 (15%)
Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
+ L S N L + L +L ++ NL S + + LD S
Sbjct: 168 QNLQLSSNRLTHVDLSLIP----SLFHANVSYNLL----------STLAIPIAVEELDAS 213
Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSF 286
N I + + L L++ HN T L L + ++YN + + F
Sbjct: 214 HNSINVVRGPVNV---ELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPF 268
Query: 287 LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIH 346
+ + LER+ + NRL + + + +L+L +N L + + Q ++
Sbjct: 269 VKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQ------FDRLE 321
Query: 347 ILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLN 406
L L +N + L T LK+L L+ N L +
Sbjct: 322 NLYLDHNSIVTLKLSTHHT--------------LKNLTLSHNDWDCNSLRALFRNVARPA 367
Query: 407 VRDNQITTLSSSALNYKLLTK 427
V D L + L K
Sbjct: 368 VDDADQHCKIDYQLEHGLCCK 388
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 222 bits (568), Expect = 3e-62
Identities = 91/547 (16%), Positives = 190/547 (34%), Gaps = 63/547 (11%)
Query: 157 QIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHG 216
++F ++ + + +R K+F + L L + + +
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423
Query: 217 LVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
+ + N+I I + I + L + ++ FT + Y
Sbjct: 424 SLKDTQIGNLTNRITFISKAI-QRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYA 477
Query: 277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQ- 335
+ + S+ + + L + L T L ++ LN+ NR
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537
Query: 336 ---GGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLIN 392
+ KI I +GYN L + Q KL LD N + +
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNL----------EEFPASASLQKMVKLGLLDCVHNKVRH 587
Query: 393 LESTGLEDTLDNLNVRDNQITTLSSSALNY-KLLTKLDLSHNNLKEL-EPTAFTNVPTLL 450
LE+ G L +L + NQI + + + L SHN LK + +V +
Sbjct: 588 LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG 647
Query: 451 HLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
++ S N + S + + +N + L++N + +
Sbjct: 648 SVDFSYN-KIGSEGRNISCSMDDYK-------------------GINASTVTLSYNEIQK 687
Query: 511 IPEMMFKNLLNLTYLDLSNNNIVNL-------RVGSLYGLPSMKRLDLSFNKLTTFKGDY 563
P +F ++ + LSNN + ++ + G+ + +DL FNKLT+ D+
Sbjct: 688 FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF 747
Query: 564 FNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKF---NYFPKEL---I 617
T L ++++ N + P+ S+LK + + N ++ I
Sbjct: 748 RAT----TLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802
Query: 618 LGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLS 677
L ++ + +N ++ +D+ P+L L++ +N +I T + + L
Sbjct: 803 TTCPSLIQLQIGSNDIRKVDE---KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLL 859
Query: 678 FNRLEKL 684
+++ + +
Sbjct: 860 YDKTQDI 866
Score = 215 bits (548), Expect = 2e-59
Identities = 90/540 (16%), Positives = 173/540 (32%), Gaps = 77/540 (14%)
Query: 191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMD 250
+ L LA + L L++L +
Sbjct: 325 VTGLSLAGFGAKGRVPD-----AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379
Query: 251 HNRFT-SIPSVSLNGPRALRILSMAYNR------IGTLKADSFLSQRWLERIILRGNRLT 303
+R + L+ + L + + + + +K DS +S + + I NR+T
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ-IGNLTNRIT 438
Query: 304 TIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTF 363
I A L K+ I+ + N N Y + + ++
Sbjct: 439 FISK-AIQRLTKLQIIYFANSPFTYDNIAVDW----------EDANSDYAKQYENEELSW 487
Query: 364 QGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED--TLDNLNVRDNQITTLSSSALN 421
+ L ++L + L D L +LN+ N+ + + +
Sbjct: 488 SN-----------LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536
Query: 422 YKL----------LTKLDLSHNNLKEL-EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP 470
+ + + +NNL+E + + L L+ N + L F
Sbjct: 537 WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLEA--FGT 593
Query: 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM-FKNLLNLTYLDLSN 529
KL L L ++ IP+ ++ L +HN L IP + K++ + +D S
Sbjct: 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY 653
Query: 530 NNIVNLRVGSLYGLP-----SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNE 584
N I + + + + LS+N++ F + F S + + L+NN
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA-----TGSPISTIILSNNL 708
Query: 585 LTYL-------FPSSFTIHSKLKTLKLAFNKFNYFPKELILG-LSYLQEIDLSNNQLKTI 636
+T + ++ L T+ L FNK + L YL +D+S N +
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF 768
Query: 637 DDYDYGYLPRLRKLNL------NNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
+L+ + N I T L + + N + K+ E+L
Sbjct: 769 PT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTP 827
Score = 201 bits (512), Expect = 1e-54
Identities = 73/476 (15%), Positives = 165/476 (34%), Gaps = 58/476 (12%)
Query: 249 MDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGG 308
+ + + P V L+ + LS+A D+ L+ + + T
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365
Query: 309 AFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHI 368
+ + +R+ F + ++++ +L + +N+
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMF----LDYDQRLNLSDLLQDAINRNPE-------- 413
Query: 369 TIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDN------LNVRDNQITTLSSSALNY 422
LK + + T + + + ++ T + +
Sbjct: 414 MKPIKKDSRISLKDTQIG---NLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD-- 468
Query: 423 KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAAT 482
+ + E E +++N+ L + L +++ LP L +L+ L++A
Sbjct: 469 --WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACN 525
Query: 483 GLKSIPQY---------QFDELLNLKYLCLAHNHLTEIP-EMMFKNLLNLTYLDLSNNNI 532
S Q D ++ + +N+L E P + ++ L LD +N +
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV 585
Query: 533 VNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSS 592
+L + + L L +N++ D+ T +E L ++N+L Y+ P+
Sbjct: 586 RHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCA-----FTDQVEGLGFSHNKLKYI-PNI 637
Query: 593 FTIHS--KLKTLKLAFNKFNYFPKELILGLSY-----LQEIDLSNNQLKTIDDYDYGYLP 645
F S + ++ ++NK + + + + LS N+++ +
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697
Query: 646 RLRKLNLNNNNIDAISE-------TCFFNSSQLQIINLSFNRLEKLPERLFNTFLY 694
+ + L+NN + +I E + N+ L I+L FN+L L + T L
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753
Score = 175 bits (445), Expect = 6e-46
Identities = 64/388 (16%), Positives = 129/388 (33%), Gaps = 47/388 (12%)
Query: 191 LQELRLADNLFGDSLNPIFS----TSEFHGLVNLRILDLSDNQIKAI-EEGILKGCDNLL 245
LQ L +A N + + ++I + N ++ L+ L
Sbjct: 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576
Query: 246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI 305
L HN+ + + L L + YN+I + D +E + N+L I
Sbjct: 577 LLDCVHNKVRHLEA--FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634
Query: 306 -EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQ 364
+ + ++ YN++ + + L YN + K
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF------ 688
Query: 365 GTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKL 424
F + ++ L+ N + ++ ++L +D
Sbjct: 689 -----PTELFATGSPISTIILSNNLMTSIPE-------NSLKPKDGNYKNTYL------- 729
Query: 425 LTKLDLSHNNLKEL-EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATG 483
LT +DL N L L + T +P L ++++S N SS P + +L+ +
Sbjct: 730 LTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLN-SSQLKAFGIRHQR 787
Query: 484 -------LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR 536
L+ P +L L + N + ++ E + L LD+++N +++
Sbjct: 788 DAEGNRILRQWPT-GITTCPSLIQLQIGSNDIRKVDEKLTPQL---YILDIADNPNISID 843
Query: 537 VGSLYGLPSMKRLDLSFNKLTTFKGDYF 564
V S+ L ++K +G
Sbjct: 844 VTSVCPYIEAGMYVLLYDKTQDIRGCDA 871
Score = 111 bits (280), Expect = 1e-25
Identities = 43/296 (14%), Positives = 98/296 (33%), Gaps = 32/296 (10%)
Query: 154 LPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSE 213
+P + +D + L FS N L+ + + + + + + N G I + +
Sbjct: 610 IPEDFCAFTDQ-VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
+ +N + LS N+I+ + + + + +N TSIP SL
Sbjct: 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN----- 723
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTI-EGGAFNGLAKIHILNLGYNRLNKLNSD 332
L I LR N+LT++ + L + +++ YN + +
Sbjct: 724 ----YKNTYL--------LTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQ 771
Query: 333 TFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLIN 392
H + NR+ + + L L + N +
Sbjct: 772 PLNSSQLKAFGIRHQRDAEGNRILR-----------QWPTGITTCPSLIQLQIGSNDIRK 820
Query: 393 LESTGLEDTLDNLNVRDNQITTLSSSALNYKL-LTKLDLSHNNLKELEPTAFTNVP 447
++ L L++ DN ++ +++ + L ++ +++ +
Sbjct: 821 VDEKLTPQ-LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875
Score = 68.0 bits (166), Expect = 7e-12
Identities = 27/193 (13%), Positives = 57/193 (29%), Gaps = 24/193 (12%)
Query: 505 HNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYF 564
+ + P + N +T L L+ ++ L +K L + T +
Sbjct: 308 LDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFG 367
Query: 565 NTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQ 624
+ + P+ S + + +L L + N P+ + +
Sbjct: 368 DEELTPDMS----EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE--MKPIKKDS 421
Query: 625 EIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKL 684
I L + Q+ N I IS+ ++LQII + +
Sbjct: 422 RISLKDTQI-----------------GNLTNRITFISKA-IQRLTKLQIIYFANSPFTYD 463
Query: 685 PERLFNTFLYTNY 697
+ ++Y
Sbjct: 464 NIAVDWEDANSDY 476
Score = 67.6 bits (165), Expect = 8e-12
Identities = 26/184 (14%), Positives = 50/184 (27%), Gaps = 42/184 (22%)
Query: 167 RRLDFSGNALRRLSDKLFSPHRDT------LQELRLADNLFGDSLNPIFSTSEFHGLVNL 220
+ S N + + + P L + L N L + L L
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN----KLTSLSDDFRATTLPYL 755
Query: 221 RILDLSDNQIKAIEEGI-----------------------------LKGCDNLLELRMDH 251
+D+S N + + C +L++L++
Sbjct: 756 SNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815
Query: 252 NRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFN 311
N + L IL +A N ++ S +L ++ I G
Sbjct: 816 NDIRKVDEKLTPQ---LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDAL 872
Query: 312 GLAK 315
G+ +
Sbjct: 873 GIER 876
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 207 bits (529), Expect = 7e-60
Identities = 100/426 (23%), Positives = 161/426 (37%), Gaps = 52/426 (12%)
Query: 163 DIP--IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNL 220
++P + +D S N++ L++ FS LQ L++ G + + F GL +L
Sbjct: 27 ELPAHVNYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRN----NTFRGLSSL 81
Query: 221 RILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGT 280
IL L NQ +E G G NL L +
Sbjct: 82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA----------------------V 119
Query: 281 LKADSFLSQRWLERIILRGNRLTTIE-GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
L + F LE ++LR N + I+ F + + H+L+L +N++ + +
Sbjct: 120 LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179
Query: 340 NGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLE 399
L L L +N + +LDL+GN +
Sbjct: 180 KHFTL---LRLSSITLQDMNEYWLGWEKCGNP---FKNTSITTLDLSGNGFKESMAKRFF 233
Query: 400 DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPT--LLHLNLSRN 457
D + T + S L+ H N K+ + F + + +LS++
Sbjct: 234 DAIAG--------TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285
Query: 458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK 517
+ +L F LE L LA + I F L +L L L+ N L I MF+
Sbjct: 286 -KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344
Query: 518 NLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEE 577
NL L LDLS N+I L S GLP++K L L N+L + F+ +SL++
Sbjct: 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD-----RLTSLQK 399
Query: 578 LNLNNN 583
+ L+ N
Sbjct: 400 IWLHTN 405
Score = 193 bits (493), Expect = 8e-55
Identities = 87/401 (21%), Positives = 146/401 (36%), Gaps = 56/401 (13%)
Query: 291 WLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNL 350
+ + L N + + +F+ L + L + + F GL+ + IL L
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP----GLVIRNNTFRGLSSLIILKL 86
Query: 351 GYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED-------TLD 403
YN+ +L + F G L+ L L NL+ L +L+
Sbjct: 87 DYNQFLQLETGAFNG-----------LANLEVLTLTQC---NLDGAVLSGNFFKPLTSLE 132
Query: 404 NLNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTN--VPTLLHLNLSRN-- 457
L +RDN I + ++ + LDL+ N +K + N L LS
Sbjct: 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL 192
Query: 458 -----AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYL----------- 501
L G + LDL+ G K +F + + +
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252
Query: 502 --CLAHNHLTEIPEMMFKNLL--NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
H + + FK L + DLS + I L +++L L+ N++
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312
Query: 558 TFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELI 617
+ F + L +LNL+ N L + F KL+ L L++N +
Sbjct: 313 KIDDNAFW-----GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367
Query: 618 LGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
LGL L+E+ L NQLK++ D + L L+K+ L+ N D
Sbjct: 368 LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408
Score = 174 bits (442), Expect = 1e-47
Identities = 68/315 (21%), Positives = 117/315 (37%), Gaps = 26/315 (8%)
Query: 401 TLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLK-ELEPTAFTNVPTLLHLNLSRNA 458
++ +++ N I L+ ++ + L L + + F + +L+ L L N
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN- 89
Query: 459 HLSSLPVGGFDPLKKLEVLDLAATGLKS--IPQYQFDELLNLKYLCLAHNHLTEI-PEMM 515
L G F+ L LEVL L L + F L +L+ L L N++ +I P
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK--RLDLSFNKLTTFKGDYFNTKSKPN-- 571
F N+ LDL+ N + ++ L L LS L + + N
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209
Query: 572 -TSSLEELNLNNNELTYLFPSSF-------------TIHSKLKTLKLAFNKFNYFPKELI 617
+S+ L+L+ N F +S F
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 618 LGL--SYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIIN 675
GL S ++ DLS +++ + + + L +L L N I+ I + F+ + L +N
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329
Query: 676 LSFNRLEKLPERLFN 690
LS N L + R+F
Sbjct: 330 LSQNFLGSIDSRMFE 344
Score = 146 bits (369), Expect = 7e-38
Identities = 57/286 (19%), Positives = 105/286 (36%), Gaps = 37/286 (12%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
+ +DLS N++ EL T+F+ + L L + + + F L L +L L
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTE--IPEMMFKNLLNLTYLDLSNNNIVNLR-VGSLY 541
+ F+ L NL+ L L +L + FK L +L L L +NNI ++
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151
Query: 542 GLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKT 601
+ LDL+FNK+ + + + L L++ L +
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKH---FTLLRLSSITLQDMNE----------- 197
Query: 602 LKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDD---YDYGYLPRLRKLNLNN---- 654
+ + + +DLS N K +D +++ L L+N
Sbjct: 198 -----YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252
Query: 655 ------NNIDAISETCFFN--SSQLQIINLSFNRLEKLPERLFNTF 692
N F +S ++ +LS +++ L + +F+ F
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF 298
Score = 100 bits (250), Expect = 2e-22
Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 6/164 (3%)
Query: 162 SDIPIRRLDFSGNALRRLSDKLFSPHRDT-LQELRLADNLFGDSLNPIFSTSEFHGLVNL 220
S+ F + + F + ++ L+ + + + + F +L
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS----KIFALLKSV-FSHFTDL 301
Query: 221 RILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGT 280
L L+ N+I I++ G +LL+L + N SI S L +L ++YN I
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361
Query: 281 LKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
L SFL L+ + L N+L ++ G F+ L + + L N
Sbjct: 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 72.5 bits (178), Expect = 1e-13
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFN-YFPKELILGLSYLQEIDLSNN 631
+ + ++L+ N + L +SF+ L+ LK+ GLS L + L N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 632 QLKTIDDYDYGYLPRLRKLNLNNNNIDA--ISETCFFNSSQLQIINLSFNRLEKL-PERL 688
Q ++ + L L L L N+D +S F + L+++ L N ++K+ P
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 689 FN 690
F
Sbjct: 150 FL 151
Score = 48.6 bits (116), Expect = 6e-06
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
+L+ S N L + ++F + D L+ L L+ N F GL NL+ L L
Sbjct: 326 LKLNLSQNFLGSIDSRMFE-NLDKLEVLDLSYNHIR-----ALGDQSFLGLPNLKELALD 379
Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRF 254
NQ+K++ +GI +L ++ + N +
Sbjct: 380 TNQLKSVPDGIFDRLTSLQKIWLHTNPW 407
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 208 bits (530), Expect = 1e-58
Identities = 81/376 (21%), Positives = 147/376 (39%), Gaps = 32/376 (8%)
Query: 182 KLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGC 241
+ + + D ++ E L N +I+ ++ ++ + +L
Sbjct: 15 EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 74
Query: 242 DNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNR 301
+ L ++ + I + + ++ L M +N I L F + L ++L N
Sbjct: 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134
Query: 302 LTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSD 361
L+++ G F+ K+ L++ N L ++ DTFQ + L L NRL ++
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-----ATTSLQNLQLSSNRLTHVD-- 187
Query: 362 TFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALN 421
L +++ N L L ++ L+ N I +
Sbjct: 188 ------------LSLIPSLFHANVSYNLLSTLAI---PIAVEELDASHNSINVVRGPVNV 232
Query: 422 YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA 481
LT L L HNNL + N P L+ ++LS N L + F +++LE L ++
Sbjct: 233 E--LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISN 287
Query: 482 TGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLY 541
L ++ Y + LK L L+HNHL + L L L +N+IV L++ +
Sbjct: 288 NRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLST-- 343
Query: 542 GLPSMKRLDLSFNKLT 557
++K L LS N
Sbjct: 344 -HHTLKNLTLSHNDWD 358
Score = 190 bits (484), Expect = 2e-52
Identities = 82/396 (20%), Positives = 148/396 (37%), Gaps = 55/396 (13%)
Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
R N + ++ D + G L I+ + +
Sbjct: 5 QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64
Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
KL + F++++ L+LN QI +
Sbjct: 65 KLPAALLDS-----------FRQVELLNLND----------------------LQIEEID 91
Query: 417 SSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLE 475
+ A + KL + N ++ L P F NVP L L L RN LSSLP G F KL
Sbjct: 92 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLT 150
Query: 476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL 535
L ++ L+ I F +L+ L L+ N LT + + +L + ++S N +
Sbjct: 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL--- 204
Query: 536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTI 595
+L +++ LD S N + +G L L L +N LT +
Sbjct: 205 --STLAIPIAVEELDASHNSINVVRGPVN--------VELTILKLQHNNLTDT--AWLLN 252
Query: 596 HSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
+ L + L++N+ + + L+ + +SNN+L ++ Y +P L+ L+L++N
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP-IPTLKVLDLSHN 311
Query: 656 NIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT 691
++ + +L+ + L N + L +T
Sbjct: 312 HLLHVERN-QPQFDRLENLYLDHNSIVTLKLSTHHT 346
Score = 184 bits (468), Expect = 4e-50
Identities = 91/535 (17%), Positives = 181/535 (33%), Gaps = 66/535 (12%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+ + F + +R+L L + +L+L
Sbjct: 53 QKIVTFKNSTMRKLPAALLD------------------------------SFRQVELLNL 82
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
+D QI+ I+ + +L M N +P L +L + N + +L
Sbjct: 83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 142
Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
F + L + + N L IE F + L L NRL ++ + + +
Sbjct: 143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--------LSLIPSL 194
Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNL 405
N+ YN L+ L ++ LD + N + + + L L
Sbjct: 195 FHANVSYNLLSTLAIPIA----------------VEELDASHNSINVVRGPVNVE-LTIL 237
Query: 406 NVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPV 465
++ N +T + NY L ++DLS+N L+++ F + L L +S N L +L
Sbjct: 238 KLQHNNLTDTAWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALN- 294
Query: 466 GGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYL 525
P+ L+VLDL+ L + + Q + L+ L L HN + + L L
Sbjct: 295 LYGQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLK---LSTHHTLKNL 350
Query: 526 DLSNNNIVNLRVGSLY---GLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNN 582
LS+N+ + +L+ P++ D + +S +
Sbjct: 351 TLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIAL 410
Query: 583 NELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQL-KTIDDYDY 641
+ + S T+ + +Y ++ + L ++++ N+L +
Sbjct: 411 TSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTN 470
Query: 642 GYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTN 696
+ + + L + ID L + + N++ + L
Sbjct: 471 EQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRET 525
Score = 126 bits (317), Expect = 2e-30
Identities = 40/216 (18%), Positives = 79/216 (36%), Gaps = 13/216 (6%)
Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK-----NLLNLTYLDLSNNNIVNLRVG 538
P+Y+ + H+ + ++ L N + N+ + L
Sbjct: 10 KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 69
Query: 539 SLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSK 598
L ++ L+L+ ++ F ++++L + N + YL P F
Sbjct: 70 LLDSFRQVELLNLNDLQIEEIDTYAFA-----YAHTIQKLYMGFNAIRYLPPHVFQNVPL 124
Query: 599 LKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
L L L N + P+ + L + +SNN L+ I+D + L+ L L++N +
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184
Query: 659 AISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLY 694
+ + L N+S+N L L + L
Sbjct: 185 HVDLSLI---PSLFHANVSYNLLSTLAIPIAVEELD 217
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 196 bits (501), Expect = 3e-54
Identities = 69/543 (12%), Positives = 171/543 (31%), Gaps = 47/543 (8%)
Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
L + + + +L ++
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167
Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSF 286
+ + + + ++ N T + ++ LR M +
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPFVAENICEA 226
Query: 287 LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIH 346
E + E ++ L + + + L ++
Sbjct: 227 WENENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-----FLKALPEMQ 276
Query: 347 ILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL---ESTGLEDTLD 403
++N+ NR + +K++ + + N L S L
Sbjct: 277 LINVACNRGISGEQLKDDWQ---ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLG 333
Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
L NQ+ + + L L+L++N + E+ + +L+ + N L +
Sbjct: 334 MLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYI 392
Query: 464 P-VGGFDPLKKLEVLDLAATGLKSIPQYQFDE-------LLNLKYLCLAHNHLTEIPEMM 515
P + + + +D + + S+ FD +N+ + L++N +++ P+ +
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452
Query: 516 FKNLLNLTYLDLSNNNIVNLRVG-------SLYGLPSMKRLDLSFNKLTTFKGDYFNTKS 568
F L+ ++L N + + + + +DL FNKLT D+ T
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT-- 510
Query: 569 KPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNK---FNYFPKEL---ILGLSY 622
L ++L+ N + P+ S LK + + N +E I
Sbjct: 511 --TLPYLVGIDLSYNSFSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567
Query: 623 LQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE 682
L ++ + +N ++ +++ P + L++ +N +I + + + L +++ +
Sbjct: 568 LTQLQIGSNDIRKVNE---KITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624
Query: 683 KLP 685
+
Sbjct: 625 DIR 627
Score = 192 bits (490), Expect = 7e-53
Identities = 94/533 (17%), Positives = 174/533 (32%), Gaps = 61/533 (11%)
Query: 191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEG-ILKGCDNLLELRM 249
+ L L + L L +L L + K E KG +
Sbjct: 83 VTGLSLEGFGASGRVPD-----AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRI------GTLKADSFLSQRWLERIILRGNRLT 303
++ + + I ++K S ++ + +I N +T
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK-DTQIGQLSNNIT 196
Query: 304 TIEGGAFNGLAKIHILNLGYNRLNKLNSDTF-QGGAFNGLAKIHILNLGYNRLNKLNSDT 362
+ L K+ +G + N + + +L ++ L L
Sbjct: 197 FVSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255
Query: 363 FQGTHI--TIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL 420
+ +F + +++ +++ N I+ E L+D L + A
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ--LKDDWQAL-----------ADAP 302
Query: 421 NYKLLTKLDLSHNNLKELE-PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
+ + + + +NNLK T+ + L L N L F KL L+L
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKL-PAFGSEIKLASLNL 360
Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMF-KNLLNLTYLDLSNNNIVNLRVG 538
A + IP ++ L AHN L IP + K++ ++ +D S N I ++
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420
Query: 539 SLYGLP-------SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYL--- 588
+ L ++ ++LS N+++ F + F+ S L +NL N LT +
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFS-----TGSPLSSINLMGNMLTEIPKN 475
Query: 589 ----FPSSFTIHSKLKTLKLAFNKFNYFPKELILG-LSYLQEIDLSNNQLKTIDDYDYGY 643
+F L ++ L FNK + L YL IDLS N
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT-QPLN 534
Query: 644 LPRLRKLNLNN------NNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
L+ + N N L + + N + K+ E++
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITP 587
Score = 170 bits (432), Expect = 5e-45
Identities = 75/470 (15%), Positives = 161/470 (34%), Gaps = 48/470 (10%)
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
+ + + + P VSLN + LS+ D+ LE + L + E
Sbjct: 65 ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124
Query: 310 FNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHIT 369
I + + +Q + + +L + +N +
Sbjct: 125 GPKG----ISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ------QKS 174
Query: 370 IFSFFQDFQKLKSLDLNGNFLINLESTGLEDT-LDNLNVRDNQITTLSSSALNYKLLTKL 428
I + K + N + + + T L + ++ + +
Sbjct: 175 IKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENIC----EAWENE 230
Query: 429 DLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP 488
+ + + E + N+ L + + +L+ LP L +++++++A S
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGE 289
Query: 489 QY--------QFDELLNLKYLCLAHNHLTEIP-EMMFKNLLNLTYLDLSNNNIVNLRVGS 539
Q ++ + + +N+L P E + + L L+ N + + +
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK-LPA 348
Query: 540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHS-- 597
+ L+L++N++T ++ T +E L+ +N+L Y+ P+ F S
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFCG-----FTEQVENLSFAHNKLKYI-PNIFDAKSVS 402
Query: 598 KLKTLKLAFNKFNYFPK-------ELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKL 650
+ + ++N+ + I+LSNNQ+ + L +
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462
Query: 651 NLNNNNIDAISE-------TCFFNSSQLQIINLSFNRLEKLPERLFNTFL 693
NL N + I + F N+ L I+L FN+L KL + T L
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512
Score = 162 bits (412), Expect = 2e-42
Identities = 84/543 (15%), Positives = 166/543 (30%), Gaps = 75/543 (13%)
Query: 154 LPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSE 213
+ ++F I D +R K F + L +
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
+ + N I + + +++ L + M ++ F + N A +
Sbjct: 179 SRITLKDTQIGQLSNNITFVSKAVMR-LTKLRQFYMGNSPFVA-----ENICEAWENENS 232
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDT 333
Y + + + + + L + + T L ++ ++N+ NR
Sbjct: 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292
Query: 334 FQGGAFNGLA---KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFL 390
A KI I+ +GYN L + + Q +KL L+ N L
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNL----------KTFPVETSLQKMKKLGMLECLYNQL 342
Query: 391 ----------INLES--------TGLEDT-------LDNLNVRDNQITTLSSSALNYKL- 424
I L S T + ++NL+ N++ + + +
Sbjct: 343 EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402
Query: 425 -LTKLDLSHNNLKELEPTAFTNVPT-------LLHLNLSRNAHLSSLPVGGFDPLKKLEV 476
++ +D S+N + ++ F + + +NLS N +S P F L
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSS 461
Query: 477 LDLAATGLKSIPQ-------YQFDELLNLKYLCLAHNHLTEIP-EMMFKNLLNLTYLDLS 528
++L L IP+ F L + L N LT++ + L L +DLS
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS 521
Query: 529 NNNIVNL-----RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
N+ +L G + D N+ + SL +L + +N
Sbjct: 522 YNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT-----LCPSLTQLQIGSN 576
Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGY 643
++ + + L + N + L ++ + I D
Sbjct: 577 DIRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633
Query: 644 LPR 646
+ R
Sbjct: 634 IKR 636
Score = 92.0 bits (229), Expect = 2e-19
Identities = 42/307 (13%), Positives = 95/307 (30%), Gaps = 16/307 (5%)
Query: 407 VRDNQITTLSSSALNYKLLTKLDLSHNNLKEL------EPTAFTNVPTLLHLNLSRNAHL 460
V+DN +T + + + + LKE+ + + T N + N L
Sbjct: 7 VKDNALTDDAIVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL 66
Query: 461 ---SSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMF- 516
+ P + ++ L L G +L L+ L L + +
Sbjct: 67 DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126
Query: 517 KNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLE 576
K + + ++ + + P DL + + + KS T
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186
Query: 577 ELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTI 636
++ +N +T++ + +KL+ + + F + Q
Sbjct: 187 QIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENE-----NSEYAQQYKT 240
Query: 637 DDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTN 696
+D + L L + + N T ++Q+IN++ NR + + +
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300
Query: 697 YDMAPNL 703
+ +
Sbjct: 301 APVGEKI 307
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 191 bits (488), Expect = 6e-54
Identities = 79/485 (16%), Positives = 168/485 (34%), Gaps = 54/485 (11%)
Query: 206 NPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP 265
PI L L + D + L+ D SI +
Sbjct: 12 TPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYL 67
Query: 266 RALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR 325
L ++ + N++ + L++ L I++ N++ I L + L L N+
Sbjct: 68 NNLTQINFSNNQLTDITPLKNLTK--LVDILMNNNQIADIT--PLANLTNLTGLTLFNNQ 123
Query: 326 LNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDL 385
+ ++ L ++ L L N ++ + S L+ L
Sbjct: 124 ITDID-------PLKNLTNLNRLELSSNTISDI-------------SALSGLTSLQQLSF 163
Query: 386 NGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTN 445
+ +L+ TL+ L++ N+++ +S A L L ++N + ++ P
Sbjct: 164 GNQ-VTDLKPLANLTTLERLDISSNKVSDISVLA-KLTNLESLIATNNQISDITP--LGI 219
Query: 446 VPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAH 505
+ L L+L+ N L + L L LDLA + ++ L L L L
Sbjct: 220 LTNLDELSLNGN-QLKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 274
Query: 506 NHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFN 565
N ++ I L LT L+L+ N + ++ + L ++ L L FN ++
Sbjct: 275 NQISNISP--LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP---- 326
Query: 566 TKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE 625
+ + L+ L NN+++ + SS + + L N+ + + L+ + +
Sbjct: 327 ---VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379
Query: 626 IDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLP 685
+ L++ + + + A + + ++++N
Sbjct: 380 LGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPAT--ISDGGSYTEPDITWNLPSYTN 437
Query: 686 ERLFN 690
E +
Sbjct: 438 EVSYT 442
Score = 183 bits (467), Expect = 5e-51
Identities = 96/476 (20%), Positives = 180/476 (37%), Gaps = 52/476 (10%)
Query: 204 SLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLN 263
+ T L + L IK+I+ ++ +NL ++ +N+ T I L
Sbjct: 32 GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LK 87
Query: 264 GPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGY 323
L + M N+I + + L+ L + L N++T I+ L ++ L L
Sbjct: 88 NLTKLVDILMNNNQIADITPLANLTN--LTGLTLFNNQITDID--PLKNLTNLNRLELSS 143
Query: 324 NRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSL 383
N ++ +++ +GL + L+ G +T + L+ L
Sbjct: 144 NTISDISA-------LSGLTSLQQLSFGNQ--------------VTDLKPLANLTTLERL 182
Query: 384 DLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAF 443
D++ N + ++ L++L +NQI+ ++ L +L L+ N LK++
Sbjct: 183 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSLNGNQLKDIGT--L 239
Query: 444 TNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCL 503
++ L L+L+ N +S+L L KL L L A + +I L L L L
Sbjct: 240 ASLTNLTDLDLANN-QISNLA--PLSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 294
Query: 504 AHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDY 563
N L +I NL NLTYL L NNI ++ + L ++RL NK++
Sbjct: 295 NENQLEDISP--ISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNNKVSDVSSLA 350
Query: 564 FNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYL 623
T + L+ +N+++ L + +++ L L + P +S
Sbjct: 351 NLTN-------INWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPVNYKANVSIP 401
Query: 624 QEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679
+ L I + ++ N +E + S + I +
Sbjct: 402 NTVKNVTGAL--IAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTT 455
Score = 177 bits (452), Expect = 7e-49
Identities = 99/476 (20%), Positives = 177/476 (37%), Gaps = 60/476 (12%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+ ++D + D + L+ I S L NL ++
Sbjct: 26 KMKTVLGKT---NVTDTVSQTDLDQVTTLQADRLG-------IKSIDGVEYLNNLTQINF 75
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
S+NQ+ I LK L+++ M++N+ I L L L++ N+I +
Sbjct: 76 SNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPLK 131
Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
L+ L R+ L N ++ I A +GL + L+ G + L +
Sbjct: 132 NLTN--LNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP--------LANLTTL 179
Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNL 405
L++ N+ ++ S L+SL N + ++ G+ LD L
Sbjct: 180 ERLDISSNK-------------VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 226
Query: 406 NVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPV 465
++ NQ+ + + A + LT LDL++N + L P + + L L L N +S++
Sbjct: 227 SLNGNQLKDIGTLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN-QISNIS- 281
Query: 466 GGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYL 525
L L L+L L+ I L NL YL L N++++I +L L L
Sbjct: 282 -PLAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336
Query: 526 DLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNEL 585
NN + ++ SL L ++ L N+++ N + + +L LN+
Sbjct: 337 FFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTPL-------ANLTRITQLGLNDQAW 387
Query: 586 TYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDY 641
T + S T+K I E D++ N ++ Y
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTG--ALIAPATISDGGSYTEPDITWNLPSYTNEVSY 441
Score = 174 bits (443), Expect = 1e-47
Identities = 90/472 (19%), Positives = 161/472 (34%), Gaps = 78/472 (16%)
Query: 225 LSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKAD 284
D I I ++ + T S + L I ++
Sbjct: 9 TQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGV 64
Query: 285 SFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAK 344
+L+ L +I N+LT I L K+ + + N++ + L
Sbjct: 65 EYLNN--LTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT-------PLANLTN 113
Query: 345 IHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDN 404
+ L L N++ + ++ L L+L+ N + ++ + +L
Sbjct: 114 LTGLTLFNNQITDI-------------DPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 160
Query: 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLP 464
L+ NQ+T L A N L +LD+S N + ++ + L L + N +S +
Sbjct: 161 LSF-GNQVTDLKPLA-NLTTLERLDISSNKVSDISV--LAKLTNLESLIATNN-QISDIT 215
Query: 465 VGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTY 524
L L+ L L LK I L NL L LA+N ++ + L LT
Sbjct: 216 --PLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269
Query: 525 LDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNE 584
L L N I N+ L GL ++ L+L+ N+L N +L L L N
Sbjct: 270 LKLGANQISNIS--PLAGLTALTNLELNENQLEDISP-------ISNLKNLTYLTLYFNN 320
Query: 585 LTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYL 644
++ + P + L+ LQ + NN++ + L
Sbjct: 321 ISDISP--------------------------VSSLTKLQRLFFYNNKVSDVSSL--ANL 352
Query: 645 PRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTN 696
+ L+ +N I ++ N +++ + L+ P N
Sbjct: 353 TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402
Score = 156 bits (397), Expect = 2e-41
Identities = 99/447 (22%), Positives = 177/447 (39%), Gaps = 61/447 (13%)
Query: 166 IRRLDFSGNALRRLS--DKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRIL 223
+ +++FS N L ++ L L ++ + +N I + L NL L
Sbjct: 70 LTQINFSNNQLTDITPLKNLTK-----LVDILMNNNQ-------IADITPLANLTNLTGL 117
Query: 224 DLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKA 283
L +NQI I+ LK NL L + N + I +L+G +L+ LS N++ LK
Sbjct: 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSF-GNQVTDLKP 172
Query: 284 DSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLA 343
+ L+ LER+ + N+++ I L + L N+++ + L
Sbjct: 173 LANLTT--LERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDIT-------PLGILT 221
Query: 344 KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLD 403
+ L+L N+L + + L LDL N + NL L
Sbjct: 222 NLDELSLNGNQLKDIGT-------------LASLTNLTDLDLANNQISNLAPLSGLTKLT 268
Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
L + NQI+ +S A LT L+L+ N L+++ P +N+ L +L L N ++S +
Sbjct: 269 ELKLGANQISNISPLA-GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN-NISDI 324
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
L KL+ L + + L N+ +L HN ++++ NL +T
Sbjct: 325 S--PVSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRIT 378
Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
L L++ N + ++ + N G + + S E ++ N
Sbjct: 379 QLGLNDQAWTNA---PVNYKANVSIPNTVKNVT----GALIAPATISDGGSYTEPDITWN 431
Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFN 610
+Y S+T S+ T+ F+
Sbjct: 432 LPSYTNEVSYTF-SQPVTIGKGTTTFS 457
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 183 bits (466), Expect = 3e-52
Identities = 69/312 (22%), Positives = 120/312 (38%), Gaps = 25/312 (8%)
Query: 380 LKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKEL 438
L+ + + L + L L++++N+IT + N K L L L +N + ++
Sbjct: 33 LRVVQCSDLGLEKV-PKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91
Query: 439 EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNL 498
P AF + L L LS+N L LP K L+ L + + + + F+ L +
Sbjct: 92 SPGAFAPLVKLERLYLSKN-QLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQM 147
Query: 499 KYLCLAHNHLTE--IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
+ L N L I F+ + L+Y+ +++ NI + G L L L NK+
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL---TELHLDGNKI 204
Query: 557 TTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKEL 616
T ++L +L L+ N ++ + S L+ L L NK P L
Sbjct: 205 TKVDAASLK-----GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259
Query: 617 ILGLSYLQEIDLSNNQLKTIDDYD------YGYLPRLRKLNLNNNNI--DAISETCFFNS 668
Y+Q + L NN + I D ++L +N + I + F
Sbjct: 260 -ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318
Query: 669 SQLQIINLSFNR 680
+ L +
Sbjct: 319 YVRAAVQLGNYK 330
Score = 180 bits (460), Expect = 2e-51
Identities = 66/275 (24%), Positives = 122/275 (44%), Gaps = 23/275 (8%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
LDL +N + E++ F N+ L L L N +S + G F PL KLE L L+ L
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQL 112
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNI--VNLRVGSLYG 542
K +P+ L+ L + N +T++ + +F L + ++L N + + G+ G
Sbjct: 113 KELPEKMPK---TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
Query: 543 LPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTL 602
+ + + ++ +TT SL EL+L+ N++T + +S + L L
Sbjct: 170 MKKLSYIRIADTNITTIPQGLP--------PSLTELHLDGNKITKVDAASLKGLNNLAKL 221
Query: 603 KLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE 662
L+FN + + +L+E+ L+NN+L + ++ + L+NNNI AI
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD-HKYIQVVYLHNNNISAIGS 280
Query: 663 TCFF------NSSQLQIINLSFNRLE--KLPERLF 689
F + ++L N ++ ++ F
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315
Score = 180 bits (458), Expect = 3e-51
Identities = 70/321 (21%), Positives = 128/321 (39%), Gaps = 53/321 (16%)
Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
+ +LDL +N+I I++G K NL L + +N+ + I + L L ++ N++
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 279 GTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGA 338
L + L+ + + N +T + FNGL ++ ++ LG N L S + GA
Sbjct: 113 KELPEKMPKT---LQELRVHENEITKVRKSVFNGLNQMIVVELGTNP---LKSSGIENGA 166
Query: 339 FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGL 398
F G+ K+ + + + + L L L+G
Sbjct: 167 FQGMKKLSYIRIADTNITTIPQGLPPS--------------LTELHLDG----------- 201
Query: 399 EDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
N+IT + +++L L KL LS N++ ++ + N P L L+L+ N
Sbjct: 202 -----------NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250
Query: 458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQF------DELLNLKYLCLAHNHL--T 509
L +P GG K ++V+ L + +I F + + + L N +
Sbjct: 251 -KLVKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308
Query: 510 EIPEMMFKNLLNLTYLDLSNN 530
EI F+ + + L N
Sbjct: 309 EIQPSTFRCVYVRAAVQLGNY 329
Score = 176 bits (448), Expect = 1e-49
Identities = 63/321 (19%), Positives = 124/321 (38%), Gaps = 44/321 (13%)
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
+P + P +L + N+I +K F + + L +IL N+++ I GA
Sbjct: 39 SDLGLEKVPK---DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95
Query: 310 FNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHIT 369
F L K+ L L N+L +L + + L + N + K+ F G +
Sbjct: 96 FAPLVKLERLYLSKNQLKELPEKMPKT--------LQELRVHENEITKVRKSVFNGLN-- 145
Query: 370 IFSFFQDFQKLKSLDLNGNFLINLESTGLEDT-------LDNLNVRDNQITTLSSSALNY 422
++ ++L N L+S+G+E+ L + + D ITT+
Sbjct: 146 ---------QMIVVELGTN---PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 193
Query: 423 KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAAT 482
LT+L L N + +++ + + L L LS N +S++ G L L L
Sbjct: 194 --LTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN 250
Query: 483 GLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMF------KNLLNLTYLDLSNNNI--VN 534
L +P + ++ + L +N+++ I F + + + L +N +
Sbjct: 251 KLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309
Query: 535 LRVGSLYGLPSMKRLDLSFNK 555
++ + + + L K
Sbjct: 310 IQPSTFRCVYVRAAVQLGNYK 330
Score = 175 bits (447), Expect = 1e-49
Identities = 74/367 (20%), Positives = 133/367 (36%), Gaps = 73/367 (19%)
Query: 292 LERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLG 351
L + L + +L+L N++ ++ G F L +H L L
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPD---TALLDLQNNKITEIKD-----GDFKNLKNLHTLILI 84
Query: 352 YNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQ 411
N+++K++ F KL+ L L+ NQ
Sbjct: 85 NNKISKISPGAFAPLV-----------KLERLYLS----------------------KNQ 111
Query: 412 ITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNA-HLSSLPVGGFDP 470
+ L K L +L + N + ++ + F + ++ + L N S + G F
Sbjct: 112 LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
Query: 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
+KKL + +A T + +IPQ +L L L N +T++ K L NL L LS N
Sbjct: 170 MKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 531 NIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFP 590
+I + GSL P ++ L L+ NKL G + K ++ + L+NN ++ +
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK------YIQVVYLHNNNISAIGS 280
Query: 591 SSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKT--IDDYDYGYLPRLR 648
+ F P + + L +N ++ I + +
Sbjct: 281 NDFC------------------PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322
Query: 649 KLNLNNN 655
+ L N
Sbjct: 323 AVQLGNY 329
Score = 154 bits (391), Expect = 7e-42
Identities = 66/266 (24%), Positives = 105/266 (39%), Gaps = 37/266 (13%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
L + S L+++ P P L+L N ++ + G F LK L L L +
Sbjct: 33 LRVVQCSDLGLEKV-PKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKI 88
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
I F L+ L+ L L+ N L E+PE M K L L + N I +R GL
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL---QELRVHENEITKVRKSVFNGLN 145
Query: 545 SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKL 604
M ++L N L + + +F KL +++
Sbjct: 146 QMIVVELGTNPLKSS---------------------------GIENGAFQGMKKLSYIRI 178
Query: 605 AFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETC 664
A P+ L L E+ L N++ +D L L KL L+ N+I A+
Sbjct: 179 ADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235
Query: 665 FFNSSQLQIINLSFNRLEKLPERLFN 690
N+ L+ ++L+ N+L K+P L +
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGGLAD 261
Score = 99.7 bits (249), Expect = 5e-23
Identities = 38/228 (16%), Positives = 79/228 (34%), Gaps = 39/228 (17%)
Query: 154 LPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSE 213
LP ++ + ++ L N + ++ +F+ + + L N S
Sbjct: 115 LPEKMPKT----LQELRVHENEITKVRKSVFNGLNQ-MIVVELGTNPLKSSG---IENGA 166
Query: 214 FHGLVNLRILD---------------------LSDNQIKAIEEGILKGCDNLLELRMDHN 252
F G+ L + L N+I ++ LKG +NL +L + N
Sbjct: 167 FQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAF-- 310
+++ + SL LR L + N++ + ++++ + L N ++ I F
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCP 285
Query: 311 ----NGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNR 354
A ++L N + Q F + + LG +
Sbjct: 286 PGYNTKKASYSGVSLFS---NPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 188 bits (478), Expect = 5e-52
Identities = 91/477 (19%), Positives = 179/477 (37%), Gaps = 25/477 (5%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
L ++ N L S+ L LRIL +S N+I+ ++ + K L L +
Sbjct: 22 KTTILNISQNYI-SELWT----SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS-FLSQRWLERIILRGNRLTTIEGG 308
HN+ I L+ L +++N L F + L+ + L L
Sbjct: 77 SHNKLVKISCHPT---VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133
Query: 309 AFNGLAKIHI-LNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTH 367
L + L LG K + + Q L + N ++ + ++ T
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193
Query: 368 ITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTL----SSSALNYK 423
++ + K L+ + TL+N+ N + + + Y
Sbjct: 194 LSNIKCVLEDNKCSYF-LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252
Query: 424 LLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATG 483
++ + L + T++ L + + ++ + + + +G
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD-VFGFPQSYIYEIFSNMNIKNFTVSG 311
Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL--RVGSLY 541
+ + ++ +L ++N LT+ +L L L L N + L
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371
Query: 542 GLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKT 601
+ S+++LD+S N ++ + T SL LN+++N LT ++K
Sbjct: 372 QMKSLQQLDISQNSVSYDE----KKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKV 425
Query: 602 LKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
L L NK PK+ ++ L LQE+++++NQLK++ D + L L+K+ L+ N D
Sbjct: 426 LDLHSNKIKSIPKQ-VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
Score = 179 bits (455), Expect = 6e-49
Identities = 76/470 (16%), Positives = 166/470 (35%), Gaps = 22/470 (4%)
Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
IL++S N I + + L L + HNR + + L L +++N++
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81
Query: 279 GTLKADSFLSQRWLERIILRGNRLTTI-EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
+ ++ L+ + L N + F ++++ L L L K +
Sbjct: 82 VKISCHPTVN---LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138
Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
+ + +L LG K + + Q + K L+ +
Sbjct: 139 NISKV----LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194
Query: 398 LEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKE---LEPTAFTNVPTLLHLNL 454
+ + + ++ + L+ L L++ + T+ + ++
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254
Query: 455 SRNAHLSSLPVGGFDP----LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
S L FD LK L + + + Y ++ N+ +
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314
Query: 511 IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
+ + + +LD SNN + + + L ++ L L N+L T
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT--- 371
Query: 571 NTSSLEELNLNNNELTYLFPS-SFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLS 629
SL++L+++ N ++Y + L +L ++ N + ++ +DL
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLH 429
Query: 630 NNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679
+N++K+I L L++LN+ +N + ++ + F + LQ I L N
Sbjct: 430 SNKIKSIPK-QVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 169 bits (430), Expect = 1e-45
Identities = 84/482 (17%), Positives = 180/482 (37%), Gaps = 29/482 (6%)
Query: 222 ILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTL 281
++D S N + + + + + L + N + + + + LRIL +++NRI L
Sbjct: 4 LVDRSKNGLIHVPKDLSQ---KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60
Query: 282 KADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG 341
F + LE + L N+L I + + + L+L +N + L F
Sbjct: 61 DISVFKFNQELEYLDLSHNKLVKI---SCHPTVNLKHLDLSFNAFDALP----ICKEFGN 113
Query: 342 LAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLD---LNGNFLINLESTGL 398
++++ L L L K + +I+ + D L +L
Sbjct: 114 MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173
Query: 399 EDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSH---NNLKELEPTAFTNVPTLLHLNLS 455
+ + + + T + N K + + + + L +L+ + TL ++ +
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLK--SIPQYQFDELLNLKYLCLAHNHLTEIPE 513
N+ + L + + + ++ G Y L L + +
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293
Query: 514 MMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTS 573
+++ N+ + + + + + + LD S N LT + + +
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG-----HLT 348
Query: 574 SLEELNLNNNELTYLFPSS--FTIHSKLKTLKLAFNKFNYF-PKELILGLSYLQEIDLSN 630
LE L L N+L L + T L+ L ++ N +Y K L +++S+
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408
Query: 631 NQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
N L PR++ L+L++N I +I + LQ +N++ N+L+ +P+ +F+
Sbjct: 409 NILTDTIFR--CLPPRIKVLDLHSNKIKSIPKQ-VVKLEALQELNVASNQLKSVPDGIFD 465
Query: 691 TF 692
Sbjct: 466 RL 467
Score = 104 bits (260), Expect = 1e-23
Identities = 39/296 (13%), Positives = 96/296 (32%), Gaps = 40/296 (13%)
Query: 162 SDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLR 221
S++ + ++ + N+ R+ ++ + +++ L+ L L
Sbjct: 223 SNLTLNNIETTWNSFIRILQLVWHTT---VWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279
Query: 222 ILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTL 281
I + + + I + N+ + + + + L + N
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL---- 335
Query: 282 KADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG 341
LT L ++ L L N+L +L+
Sbjct: 336 --------------------LTDTVFENCGHLTELETLILQMNQLKELSKIA---EMTTQ 372
Query: 342 LAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDT 401
+ + L++ N ++ + L SL+++ N L + L
Sbjct: 373 MKSLQQLDISQNSVSYDEKK----------GDCSWTKSLLSLNMSSNILTDTIFRCLPPR 422
Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
+ L++ N+I ++ + + L +L+++ N LK + F + +L + L N
Sbjct: 423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 33.3 bits (76), Expect = 0.29
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 31/101 (30%)
Query: 154 LPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSE 213
L IF I+ LD N ++ + ++
Sbjct: 411 LTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVK---------------------------- 442
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRF 254
L L+ L+++ NQ+K++ +GI +L ++ + N +
Sbjct: 443 ---LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 185 bits (472), Expect = 8e-52
Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 9/235 (3%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
L+L NN++ ++ F ++ L L L RN + + VG F+ L L L+L L
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWL 135
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNN-IVNLRVGSLYGL 543
IP F+ L L+ L L +N + IP F + +L LDL + + G+ GL
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195
Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
++K L+L + LEEL ++ N + P SF S LK L
Sbjct: 196 FNLKYLNLGMCNIKDM--PNLT-----PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248
Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
+ ++ + + GL+ L E++L++N L ++ + L L +L+L++N +
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
Score = 176 bits (449), Expect = 1e-48
Identities = 70/256 (27%), Positives = 113/256 (44%), Gaps = 12/256 (4%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
+K+ + L E+ +N +LNL N ++ + F L LEVL L +
Sbjct: 56 FSKVVCTRRGLSEVPQGIPSN---TRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
+ I F+ L +L L L N LT IP F+ L L L L NN I ++ + +P
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171
Query: 545 SMKRLDLS-FNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
S+ RLDL KL F +L+ LNL + + + T L+ L+
Sbjct: 172 SLMRLDLGELKKLEYISEGAFE-----GLFNLKYLNLGMCNIKDM--PNLTPLVGLEELE 224
Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISET 663
++ N F GLS L+++ + N+Q+ I+ + L L +LNL +NN+ ++
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284
Query: 664 CFFNSSQLQIINLSFN 679
F L ++L N
Sbjct: 285 LFTPLRYLVELHLHHN 300
Score = 165 bits (419), Expect = 1e-44
Identities = 64/263 (24%), Positives = 107/263 (40%), Gaps = 43/263 (16%)
Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
N R L+L +N I+ I+ + +L L++ N I + NG +L L + N +
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135
Query: 279 GTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLG-YNRLNKLNSDTFQGG 337
+ + +F L + LR N + +I AFN + + L+LG +L + G
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI-----SEG 190
Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
AF GL + LNLG + + + L+ L+++G
Sbjct: 191 AFEGLFNLKYLNLGMCNIKDMPN-------------LTPLVGLEELEMSG---------- 227
Query: 398 LEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSR 456
N + + L KL + ++ + +E AF + +L+ LNL+
Sbjct: 228 ------------NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275
Query: 457 NAHLSSLPVGGFDPLKKLEVLDL 479
N LSSLP F PL+ L L L
Sbjct: 276 NN-LSSLPHDLFTPLRYLVELHL 297
Score = 150 bits (381), Expect = 2e-39
Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 11/218 (5%)
Query: 473 KLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNI 532
+ + GL +PQ N +YL L N++ I F++L +L L L N+I
Sbjct: 55 QFSKVVCTRRGLSEVPQGIPS---NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 533 VNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSS 592
+ VG+ GL S+ L+L N LT F S L EL L NN + + +
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE-----YLSKLRELWLRNNPIESIPSYA 166
Query: 593 FTIHSKLKTLKLA-FNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLN 651
F L L L K Y + GL L+ ++L +K + + L L +L
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTP--LVGLEELE 224
Query: 652 LNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
++ N+ I F S L+ + + +++ + F
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262
Score = 83.3 bits (206), Expect = 5e-17
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 9/135 (6%)
Query: 167 RRLDFSG-NALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
RLD L +S+ F L+ L L I LV L L++
Sbjct: 174 MRLDLGELKKLEYISEGAFE-GLFNLKYLNLGMCN-------IKDMPNLTPLVGLEELEM 225
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
S N I G G +L +L + +++ + I + +G +L L++A+N + +L D
Sbjct: 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285
Query: 286 FLSQRWLERIILRGN 300
F R+L + L N
Sbjct: 286 FTPLRYLVELHLHHN 300
Score = 77.9 bits (192), Expect = 3e-15
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 3/119 (2%)
Query: 572 TSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN 631
++ ++ L+ + P I S + L L N + L +L+ + L N
Sbjct: 53 SNQFSKVVCTRRGLSEV-PQG--IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109
Query: 632 QLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
++ I+ + L L L L +N + I F S+L+ + L N +E +P FN
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 184 bits (468), Expect = 2e-51
Identities = 62/235 (26%), Positives = 110/235 (46%), Gaps = 9/235 (3%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
L+L N ++ ++ +F ++ L L LSRN H+ ++ +G F+ L L L+L L
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRL 124
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNN-IVNLRVGSLYGL 543
+IP F L LK L L +N + IP F + +L LDL + + G+ GL
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184
Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
+++ L+L+ L L+EL+L+ N L+ + P SF L+ L
Sbjct: 185 SNLRYLNLAMCNLREI--PNLT-----PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237
Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
+ ++ + L L EI+L++N L + + L L +++L++N +
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
Score = 173 bits (441), Expect = 1e-47
Identities = 74/256 (28%), Positives = 116/256 (45%), Gaps = 12/256 (4%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
+K+ NL+E+ TN LNL N + + V F L+ LE+L L+ +
Sbjct: 45 FSKVICVRKNLREVPDGISTN---TRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHI 100
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
++I F+ L NL L L N LT IP F L L L L NN I ++ + +P
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160
Query: 545 SMKRLDLS-FNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
S++RLDL +L+ F S+L LNL L + + T KL L
Sbjct: 161 SLRRLDLGELKRLSYISEGAFE-----GLSNLRYLNLAMCNLREI--PNLTPLIKLDELD 213
Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISET 663
L+ N + GL +LQ++ + +Q++ I+ + L L ++NL +NN+ +
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273
Query: 664 CFFNSSQLQIINLSFN 679
F L+ I+L N
Sbjct: 274 LFTPLHHLERIHLHHN 289
Score = 169 bits (431), Expect = 3e-46
Identities = 71/252 (28%), Positives = 104/252 (41%), Gaps = 12/252 (4%)
Query: 440 PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLK 499
P+ + + R +L +P G +L+L ++ I F L +L+
Sbjct: 36 PSVCSCSNQFSKVICVRK-NLREVPDGIST---NTRLLNLHENQIQIIKVNSFKHLRHLE 91
Query: 500 YLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTF 559
L L+ NH+ I F L NL L+L +N + + G+ L +K L L N + +
Sbjct: 92 ILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI 151
Query: 560 KGDYFNTKSKPNTSSLEELNL-NNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL 618
FN SL L+L L+Y+ +F S L+ L LA P +
Sbjct: 152 PSYAFN-----RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LT 204
Query: 619 GLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSF 678
L L E+DLS N L I + L L+KL + + I I F N L INL+
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264
Query: 679 NRLEKLPERLFN 690
N L LP LF
Sbjct: 265 NNLTLLPHDLFT 276
Score = 162 bits (413), Expect = 7e-44
Identities = 70/263 (26%), Positives = 116/263 (44%), Gaps = 43/263 (16%)
Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
N R+L+L +NQI+ I+ K +L L++ N +I + NG L L + NR+
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124
Query: 279 GTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLG-YNRLNKLNSDTFQGG 337
T+ +F+ L+ + LR N + +I AFN + + L+LG RL+ + G
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI-----SEG 179
Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
AF GL+ + LNL L ++ + KL LDL+G
Sbjct: 180 AFEGLSNLRYLNLAMCNLREIPN-------------LTPLIKLDELDLSG---------- 216
Query: 398 LEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSR 456
N ++ + + L KL + + ++ +E AF N+ +L+ +NL+
Sbjct: 217 ------------NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264
Query: 457 NAHLSSLPVGGFDPLKKLEVLDL 479
N L+ LP F PL LE + L
Sbjct: 265 NN-LTLLPHDLFTPLHHLERIHL 286
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 185 bits (470), Expect = 2e-51
Identities = 70/513 (13%), Positives = 142/513 (27%), Gaps = 56/513 (10%)
Query: 191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMD 250
+ ++ D+ S N++ LDLS N + I L L L +
Sbjct: 12 YKIEKVTDSSL-----KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 251 HNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAF 310
N L LR L + N + L +E + N ++ +
Sbjct: 67 SNVLYETL--DLESLSTLRTLDLNNNYVQELLVGPS-----IETLHAANNNISRVSCSRG 119
Query: 311 NGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITI 370
G + L N++ L +++ L+L N + +
Sbjct: 120 QGK---KNIYLANNKITMLRD-----LDEGCRSRVQYLDLKLNEI----------DTVNF 161
Query: 371 FSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDL 430
L+ L+L NF+ +++ + L L++ N++ + + +T + L
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221
Query: 431 SHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQY 490
+N L + A L H +L N F ++++ + +K +
Sbjct: 222 RNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT--VKKLTGQ 278
Query: 491 QFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSL----YGLPSM 546
+E ++P L+ L + + + L
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQ 338
Query: 547 KRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAF 606
+ +D + T + L L + H++L
Sbjct: 339 REIDALKEQYRTVIDQVTL-----RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ- 392
Query: 607 NKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFF 666
+G LQ + L+ + Y + NN
Sbjct: 393 ----------AVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNN---AIRDWDM 439
Query: 667 NSSQLQIINLSFNRLEKLPERLFNTFLYTNYDM 699
+ + RL+KL N +
Sbjct: 440 YQHKETQLAEENARLKKLNGEADLALASANATL 472
Score = 185 bits (470), Expect = 3e-51
Identities = 56/426 (13%), Positives = 132/426 (30%), Gaps = 41/426 (9%)
Query: 284 DSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLA 343
+ + + + + L + L+L N L+++
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-----SAADLAPFT 58
Query: 344 KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLD 403
K+ +LNL N L + + L++LDLN N++ L +++
Sbjct: 59 KLELLNLSSNVLYETLD-------------LESLSTLRTLDLNNNYVQELLVGP---SIE 102
Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
L+ +N I+ +S S + + L++N + L + +L+L N + ++
Sbjct: 103 TLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTV 159
Query: 464 PVGGFDP-LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNL 522
LE L+L + + LK L L+ N L + F++ +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGV 216
Query: 523 TYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNN 582
T++ L NN +V + +L +++ DL N T + + +
Sbjct: 217 TWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHC------GTLRDFFSKNQRVQTVAK 269
Query: 583 NELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELI-----LGLSYLQEIDLSNNQLKTID 637
+ L + + P L + ++ + ++
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE 329
Query: 638 DYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNY 697
+ R R+++ + + + L++ +
Sbjct: 330 C-ERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG 388
Query: 698 DMAPNL 703
+ +
Sbjct: 389 TLQQAV 394
Score = 169 bits (429), Expect = 1e-45
Identities = 65/450 (14%), Positives = 132/450 (29%), Gaps = 57/450 (12%)
Query: 237 ILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERII 296
I + + ++ + + ++ L ++ N + + A LE +
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64
Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
L N L L+ + L+L N + +L I L+ N ++
Sbjct: 65 LSSNVLYETL--DLESLSTLRTLDLNNNYVQEL----------LVGPSIETLHAANNNIS 112
Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
+++ QG N+ + +N+IT L
Sbjct: 113 RVSCSRGQG------------------------------------KKNIYLANNKITMLR 136
Query: 417 SSAL-NYKLLTKLDLSHNNLKELEPTAF-TNVPTLLHLNLSRNAHLSSLPVGGFDPLKKL 474
+ LDL N + + + TL HLNL N + + KL
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVV--FAKL 193
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
+ LDL++ L + +F + ++ L +N L I + + NL + DL N
Sbjct: 194 KTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHC 251
Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFT 594
+ + + + ++ + G + P + +
Sbjct: 252 GTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310
Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN 654
+ L ++ E + +EID Q +T+ D L
Sbjct: 311 KRKEHALLSGQGSETERLECE-RENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369
Query: 655 NNIDAISETCFFNSSQLQIINLSFNRLEKL 684
+D ++L +L
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQAVGQIEL 399
Score = 166 bits (422), Expect = 1e-44
Identities = 69/470 (14%), Positives = 151/470 (32%), Gaps = 49/470 (10%)
Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
+ LD SGN L ++S +P L+ L L+ N+ ++ T + L LR LDL+
Sbjct: 37 KELDLSGNPLSQISAADLAPFTK-LELLNLSSNV-------LYETLDLESLSTLRTLDLN 88
Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSF 286
+N ++ + G ++ L +N + + G + + +A N+I L+
Sbjct: 89 NNYVQELLVGP-----SIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDE 140
Query: 287 LSQRWLERIILRGNRLTTIEGGAF-NGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
+ ++ + L+ N + T+ + LNL YN + + AK+
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-------FAKL 193
Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLEST-GLEDTLDN 404
L+L N+L + + FQ + + L N L+ +E L++
Sbjct: 194 KTLDLSSNKLAFMGPE------------FQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241
Query: 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLP 464
++R N + K ++ +K+L + LP
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY-CCEDLP 300
Query: 465 VGGFDPLKKLEVLDLAATGLKSIP----QYQFDELLNLKYLCLAHNHLTEIPEMMFKNLL 520
D L L+ + A + + + + + + + + +
Sbjct: 301 APFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQ 360
Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNL 580
L+ + + + + S L+ L
Sbjct: 361 AKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQH------ATEEQSPLQLLRA 414
Query: 581 NNNELTYLFPSSFTIHSK-LKTLKLAFNKFNYFPKELILGLSYLQEIDLS 629
++ ++ + ++ + +K +E E DL+
Sbjct: 415 IVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA 464
Score = 99.5 bits (248), Expect = 3e-22
Identities = 42/348 (12%), Positives = 94/348 (27%), Gaps = 26/348 (7%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
++ LD N + ++ + DTL+ L L N I+ L+ LDL
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-------IYDVKGQVVFAKLKTLDL 198
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
S N++ + + + + + +N+ I +L + L + N
Sbjct: 199 SSNKLAFMGPEF-QSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRD 256
Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
F S+ + + + G + + G L + +
Sbjct: 257 FFSK-NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEH 315
Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFL--INLESTGLEDTLD 403
+L+ + +L + + + +D + + T +
Sbjct: 316 ALLSGQGSETERLECERENQA------------RQREIDALKEQYRTVIDQVTLRKQAKI 363
Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
L + + S+ L + A L L +
Sbjct: 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMY 423
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQ--YQFDELLNLKYLCLAHNHLT 509
+ D+ + + + +L L LA + T
Sbjct: 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 174 bits (442), Expect = 2e-49
Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 6/213 (2%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
G+ + + N+I+ + +++ + LT L L N L ++ AFT + L L+L
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM 514
S NA L S+ F L +L L L GL+ + F L L+YL L N L +P+
Sbjct: 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 515 MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSS 574
F++L NLT+L L N I ++ + GL S+ RL L N++ F +
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR-----DLGR 202
Query: 575 LEELNLNNNELTYLFPSSFTIHSKLKTLKLAFN 607
L L L N L+ L + L+ L+L N
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 145 bits (367), Expect = 4e-39
Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 9/209 (4%)
Query: 483 GLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
GL+++P + + L N ++ +P F+ NLT L L +N + + + G
Sbjct: 22 GLQAVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78
Query: 543 LPSMKRLDLSFN-KLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKT 601
L +++LDLS N +L + F+ L L+L+ L L P F + L+
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFH-----GLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133
Query: 602 LKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAIS 661
L L N P + L L + L N++ ++ + + L L +L L+ N + +
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 662 ETCFFNSSQLQIINLSFNRLEKLPERLFN 690
F + +L + L N L LP
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALA 222
Score = 140 bits (356), Expect = 1e-37
Identities = 62/262 (23%), Positives = 96/262 (36%), Gaps = 61/262 (23%)
Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
+ + L N+I + + C NL L + N I + + G L L ++ N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN- 90
Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
+L +++ F+GL ++H L+L L +L G
Sbjct: 91 ----------------------AQLRSVDPATFHGLGRLHTLHLDRCGLQEL-----GPG 123
Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
F GLA + L L N L L DTF+ L L L+GN + ++
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLG-----------NLTHLFLHGNRISSVP--- 169
Query: 398 LEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
E L L +L L N + + P AF ++ L+ L L N
Sbjct: 170 -ERAFRGL-----------------HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 458 AHLSSLPVGGFDPLKKLEVLDL 479
LS+LP PL+ L+ L L
Sbjct: 212 N-LSALPTEALAPLRALQYLRL 232
Score = 133 bits (336), Expect = 8e-35
Identities = 60/230 (26%), Positives = 96/230 (41%), Gaps = 25/230 (10%)
Query: 162 SDIP--IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
IP +R+ GN + + F R+ L L L N+ ++ + F GL
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRN-LTILWLHSNVLA-RIDA----AAFTGLAL 81
Query: 220 LRILDLSDN-QIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
L LDLSDN Q+++++ G L L +D + G AL+ L + N +
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 279 GTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGA 338
L D+F L + L GNR++++ AF GL + L L NR+ ++ A
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-----HA 196
Query: 339 FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN 388
F L ++ L L N L+ L ++ + L+ L LN N
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALAP-----------LRALQYLRLNDN 235
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 173 bits (441), Expect = 9e-49
Identities = 67/357 (18%), Positives = 128/357 (35%), Gaps = 50/357 (14%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCD-NLLELRMDHNRFTSIPSVSLNGPRALRILS 272
G+ +L L + + + GC +L ++ ++P +L
Sbjct: 10 TSGIPDLDSLPPTYSAMCP------FGCHCHLRVVQCSDLGLKAVPK---EISPDTTLLD 60
Query: 273 MAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSD 332
+ N I L+ D F + L ++L N+++ I AF+ L K+ L + N L ++ +
Sbjct: 61 LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN 120
Query: 333 TFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLIN 392
+ L + NR+ K+ F G + +++ GN
Sbjct: 121 LPSS--------LVELRIHDNRIRKVPKGVFSGLR-----------NMNCIEMGGN---P 158
Query: 393 LESTGLED------TLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNV 446
LE++G E L+ L + + ++T + + L +L L HN ++ +E
Sbjct: 159 LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRY 216
Query: 447 PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
L L L N + + G L L L L L +P +L L+ + L N
Sbjct: 217 SKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTN 274
Query: 507 HLTEIPEMMFK------NLLNLTYLDLSNNNIVNLRV--GSLYGLPSMKRLDLSFNK 555
++T++ F + L NN + V + + + K
Sbjct: 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
Score = 172 bits (439), Expect = 2e-48
Identities = 61/312 (19%), Positives = 113/312 (36%), Gaps = 26/312 (8%)
Query: 380 LKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKEL 438
L+ + + L + + L++++N I+ L + L L L +N + ++
Sbjct: 35 LRVVQCSDLGLKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93
Query: 439 EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNL 498
AF+ + L L +S+N HL +P L L + ++ +P+ F L N+
Sbjct: 94 HEKAFSPLRKLQKLYISKN-HLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNM 149
Query: 499 KYLCLAHNHLTE--IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
+ + N L F L L YL +S + + ++ L L NK+
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKI 205
Query: 557 TTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKEL 616
+ + S L L L +N++ + S + L+ L L NK + P L
Sbjct: 206 QAIELEDLL-----RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL 260
Query: 617 ILGLSYLQEIDLSNNQLKTIDDYD------YGYLPRLRKLNLNNNNID--AISETCFFNS 668
L LQ + L N + + D ++L NN + + F
Sbjct: 261 -PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319
Query: 669 SQLQIINLSFNR 680
+ I +
Sbjct: 320 TDRLAIQFGNYK 331
Score = 169 bits (429), Expect = 5e-47
Identities = 65/316 (20%), Positives = 114/316 (36%), Gaps = 46/316 (14%)
Query: 345 IHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED--TL 402
+L+L N +++L D F+G Q L +L L N + + L
Sbjct: 56 TTLLDLQNNDISELRKDDFKG-----------LQHLYALVLVNNKISKIHEKAFSPLRKL 104
Query: 403 DNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNA-HLS 461
L + N + + + L +L + N ++++ F+ + + + + N S
Sbjct: 105 QKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162
Query: 462 SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN 521
G FD LK L L ++ L IP+ + L L L HN + I
Sbjct: 163 GFEPGAFDGLK-LNYLRISEAKLTGIPKDLPE---TLNELHLDHNKIQAIELEDLLRYSK 218
Query: 522 LTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLN 581
L L L +N I + GSL LP+++ L L NKL+ + K L+ + L+
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK------LLQVVYLH 272
Query: 582 NNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLK--TIDDY 639
N +T + + F P + +Y I L NN + +
Sbjct: 273 TNNITKVGVNDFC------------------PVGFGVKRAYYNGISLFNNPVPYWEVQPA 314
Query: 640 DYGYLPRLRKLNLNNN 655
+ + + N
Sbjct: 315 TFRCVTDRLAIQFGNY 330
Score = 168 bits (427), Expect = 9e-47
Identities = 67/266 (25%), Positives = 113/266 (42%), Gaps = 22/266 (8%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
T LDL +N++ EL F + L L L N +S + F PL+KL+ L ++ L
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHL 114
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNI--VNLRVGSLYG 542
IP +L L + N + ++P+ +F L N+ +++ N + G+ G
Sbjct: 115 VEIPPNLPS---SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171
Query: 543 LPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTL 602
L + L +S KLT D +L EL+L++N++ + +SKL L
Sbjct: 172 L-KLNYLRISEAKLTGIPKDLP--------ETLNELHLDHNKIQAIELEDLLRYSKLYRL 222
Query: 603 KLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE 662
L N+ + L L+E+ L NN+L + L L+ + L+ NNI +
Sbjct: 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD-LKLLQVVYLHTNNITKVGV 281
Query: 663 TCF------FNSSQLQIINLSFNRLE 682
F + I+L N +
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNPVP 307
Score = 162 bits (411), Expect = 1e-44
Identities = 79/373 (21%), Positives = 134/373 (35%), Gaps = 87/373 (23%)
Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
R + S L+ + ++ L L +N L +F GL +L L L
Sbjct: 36 RVVQCSDLGLKAVPKEISP----DTTLLDLQNNDI-SELRK----DDFKGLQHLYALVLV 86
Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSF 286
+N+I I E L +L + N IP N P +L L
Sbjct: 87 NNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP---NLPSSLVELR-------------- 129
Query: 287 LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIH 346
+ NR+ + G F+GL ++ + +G N L + F+ GAF+GL K++
Sbjct: 130 ----------IHDNRIRKVPKGVFSGLRNMNCIEMGGNP---LENSGFEPGAFDGL-KLN 175
Query: 347 ILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLN 406
L + +L + D + L L L+
Sbjct: 176 YLRISEAKLTGIPKDL--------------PETLNELHLDH------------------- 202
Query: 407 VRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPV 465
N+I + L Y L +L L HN ++ +E + + +PTL L+L N LS +P
Sbjct: 203 ---NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVP- 257
Query: 466 GGFDPLKKLEVLDLAATGLKSIPQYQF------DELLNLKYLCLAHNHLT--EIPEMMFK 517
G LK L+V+ L + + F + + L +N + E+ F+
Sbjct: 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317
Query: 518 NLLNLTYLDLSNN 530
+ + + N
Sbjct: 318 CVTDRLAIQFGNY 330
Score = 153 bits (389), Expect = 1e-41
Identities = 64/266 (24%), Positives = 106/266 (39%), Gaps = 38/266 (14%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
L + S LK + P + P L+L N +S L F L+ L L L +
Sbjct: 35 LRVVQCSDLGLKAV-PKEIS--PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKI 90
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
I + F L L+ L ++ NHL EIP + +L L + +N I + G GL
Sbjct: 91 SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSL---VELRIHDNRIRKVPKGVFSGLR 147
Query: 545 SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKL 604
+M +++ N L + P +F KL L++
Sbjct: 148 NMNCIEMGGNPLEN---------------------------SGFEPGAFD-GLKLNYLRI 179
Query: 605 AFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETC 664
+ K PK+L L E+ L +N+++ I+ D +L +L L +N I I
Sbjct: 180 SEAKLTGIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236
Query: 665 FFNSSQLQIINLSFNRLEKLPERLFN 690
L+ ++L N+L ++P L +
Sbjct: 237 LSFLPTLRELHLDNNKLSRVPAGLPD 262
Score = 34.6 bits (80), Expect = 0.10
Identities = 7/70 (10%), Positives = 23/70 (32%), Gaps = 10/70 (14%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDT-----LQELRLADN-LFGDSLNPIFSTSEFHGLVN 219
++ + N + ++ F P + L +N + + P + F + +
Sbjct: 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP----ATFRCVTD 321
Query: 220 LRILDLSDNQ 229
+ + +
Sbjct: 322 RLAIQFGNYK 331
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 171 bits (437), Expect = 5e-48
Identities = 81/392 (20%), Positives = 151/392 (38%), Gaps = 46/392 (11%)
Query: 292 LERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLG 351
+ + I LA+ L + + + L I L +
Sbjct: 2 AATLATLPAPINQIF--PDADLAEGIRAVLQKASVTDVVT-------QEELESITKLVVA 52
Query: 352 YNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQ 411
++ + + L+ L+LNGN + ++ L NL + N+
Sbjct: 53 GEKVASI-------------QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNK 99
Query: 412 ITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPL 471
IT +S+ N L +L L+ +N+ ++ P N+ + LNL N +LS L +
Sbjct: 100 ITDISALQ-NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS--PLSNM 154
Query: 472 KKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNN 531
L L + + +K + L +L L L +N + +I +L +L Y N
Sbjct: 155 TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ 210
Query: 532 IVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPS 591
I ++ + + + L + NK+T N S L L + N+++ + +
Sbjct: 211 ITDIT--PVANMTRLNSLKIGNNKITDLSPL-------ANLSQLTWLEIGTNQISDI--N 259
Query: 592 SFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLN 651
+ +KLK L + N+ + + LS L + L+NNQL D G L L L
Sbjct: 260 AVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317
Query: 652 LNNNNIDAISETCFFNSSQLQIINLSFNRLEK 683
L+ N+I I + S++ + + ++K
Sbjct: 318 LSQNHITDIRP--LASLSKMDSADFANQVIKK 347
Score = 171 bits (436), Expect = 7e-48
Identities = 73/381 (19%), Positives = 142/381 (37%), Gaps = 44/381 (11%)
Query: 206 NPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP 265
PI L L + + + +++ +L + + SI +
Sbjct: 10 APINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQG--IEYL 65
Query: 266 RALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR 325
L L++ N+I + S L + L + + N++T I A L + L L +
Sbjct: 66 TNLEYLNLNGNQITDISPLSNLVK--LTNLYIGTNKITDIS--ALQNLTNLRELYLNEDN 121
Query: 326 LNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDL 385
++ ++ L K++ LNLG N ++ S + L L +
Sbjct: 122 ISDIS-------PLANLTKMYSLNLGANHN------------LSDLSPLSNMTGLNYLTV 162
Query: 386 NGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTN 445
+ + ++ L +L++ NQI +S A + L N + ++ P N
Sbjct: 163 TESKVKDVTPIANLTDLYSLSLNYNQIEDISPLA-SLTSLHYFTAYVNQITDITP--VAN 219
Query: 446 VPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAH 505
+ L L + N ++ L L +L L++ + I +L LK L +
Sbjct: 220 MTRLNSLKIGNN-KITDLS--PLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGS 274
Query: 506 NHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFN 565
N +++I NL L L L+NN + N + + GL ++ L LS N +T
Sbjct: 275 NQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI------ 326
Query: 566 TKSKPNTSSLEELNLNNNELT 586
+ + S ++ + N +
Sbjct: 327 -RPLASLSKMDSADFANQVIK 346
Score = 169 bits (430), Expect = 6e-47
Identities = 78/419 (18%), Positives = 154/419 (36%), Gaps = 73/419 (17%)
Query: 216 GLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAY 275
G L I I + + T + + ++ L +A
Sbjct: 1 GAATLA---TLPAPINQIFP--DADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAG 53
Query: 276 NRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQ 335
++ +++ +L+ LE + L GN++T I + L K+ L +G N++ ++
Sbjct: 54 EKVASIQGIEYLTN--LEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKITDIS----- 104
Query: 336 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES 395
A L + L L + ++ + S + K+ SL+L N ++ S
Sbjct: 105 --ALQNLTNLRELYLNEDNISDI-------------SPLANLTKMYSLNLGANHNLSDLS 149
Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
++ ++ L L ++ + +K++ P N+ L L+L+
Sbjct: 150 P---------------LSNMTG-------LNYLTVTESKVKDVTP--IANLTDLYSLSLN 185
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
N + + L L + I + L L + +N +T++
Sbjct: 186 YN-QIEDIS--PLASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLSP-- 238
Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSL 575
NL LT+L++ N I ++ ++ L +K L++ N+++ N N S L
Sbjct: 239 LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDISV--LN-----NLSQL 289
Query: 576 EELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLK 634
L LNNN+L + L TL L+ N + LS + D +N +K
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
Score = 166 bits (424), Expect = 3e-46
Identities = 75/368 (20%), Positives = 142/368 (38%), Gaps = 44/368 (11%)
Query: 319 LNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQ 378
L +N++ D LA+ L + + ++ +
Sbjct: 5 LATLPAPINQIFPD-------ADLAEGIRAVLQKASVTDV-------------VTQEELE 44
Query: 379 KLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKEL 438
+ L + G + +++ L+ LN+ NQIT +S + N LT L + N + ++
Sbjct: 45 SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLS-NLVKLTNLYIGTNKITDI 103
Query: 439 EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNL 498
N+ L L L+ + ++S + L K+ L+L A S + L
Sbjct: 104 SA--LQNLTNLRELYLNED-NISDIS--PLANLTKMYSLNLGANHNLSDLS-PLSNMTGL 157
Query: 499 KYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558
YL + + + ++ NL +L L L+ N I ++ L L S+ N++T
Sbjct: 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITD 213
Query: 559 FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL 618
N + L L + NN++T L S S+L L++ N+ + +
Sbjct: 214 IT-------PVANMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISDINA--VK 262
Query: 619 GLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSF 678
L+ L+ +++ +NQ+ I L +L L LNNN + + L + LS
Sbjct: 263 DLTKLKMLNVGSNQISDISVL--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320
Query: 679 NRLEKLPE 686
N + +
Sbjct: 321 NHITDIRP 328
Score = 78.7 bits (195), Expect = 7e-16
Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 17/169 (10%)
Query: 522 LTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLN 581
L I + L R L +T + ++ S+ +L +
Sbjct: 2 AATLATLPAPINQIF--PDADLAEGIRAVLQKASVT-------DVVTQEELESITKLVVA 52
Query: 582 NNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDY 641
++ + + L+ L L N+ + L L + + N++ I
Sbjct: 53 GEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISAL-- 106
Query: 642 GYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
L LR+L LN +NI IS N +++ +NL N L N
Sbjct: 107 QNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSN 153
Score = 49.8 bits (120), Expect = 2e-06
Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 16/114 (14%)
Query: 167 RRLDFSGNALRRLS--DKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILD 224
L+ N + ++ L L+ L + N I S + L L L
Sbjct: 246 TWLEIGTNQISDINAVKDLTK-----LKMLNVGSN-------QISDISVLNNLSQLNSLF 293
Query: 225 LSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
L++NQ+ + ++ G NL L + N T I L + A I
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR--PLASLSKMDSADFANQVI 345
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 170 bits (433), Expect = 2e-47
Identities = 64/287 (22%), Positives = 124/287 (43%), Gaps = 26/287 (9%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
+GL + + +L++ +N+IT +S+S L L L L+ N + +E +F+++ +L HL+L
Sbjct: 48 SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQY-QFDELLNLKYLCLAHNH-LTEIP 512
S N +LS+L F PL L L+L K++ + F L L+ L + + T+I
Sbjct: 108 SYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166
Query: 513 EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT 572
F L L L++ +++ + SL + ++ L L + + + T
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD-----VT 221
Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
SS+E L L + +L S + N + + + +++
Sbjct: 222 SSVECLELRDTDLDTFHFSELS--------TGETNSL--------IKKFTFRNVKITDES 265
Query: 633 LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679
L + + L +L + N + ++ + F + LQ I L N
Sbjct: 266 LFQVMKLLNQ-ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Score = 151 bits (384), Expect = 1e-40
Identities = 60/324 (18%), Positives = 111/324 (34%), Gaps = 57/324 (17%)
Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
L +I G + L+L NR+ +++ + L L N +N
Sbjct: 38 GSSGSLNSIPSGLT---EAVKSLDLSNNRITYISN-----SDLQRCVNLQALVLTSNGIN 89
Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
+ D+F L +LE L++ N ++ LS
Sbjct: 90 TIEEDSFSS------------------------LGSLEH---------LDLSYNYLSNLS 116
Query: 417 SSALNY-KLLTKLDLSHNNLKELEPT-AFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKL 474
SS LT L+L N K L T F+++ L L + + + F L L
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
E L++ A+ L+S + N+ +L L + E+ ++ L+L + ++
Sbjct: 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236
Query: 535 LRV--------GSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELT 586
SL + + + ++ L S L EL + N+L
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN------QISGLLELEFSRNQLK 290
Query: 587 YLFPSSFTIHSKLKTLKLAFNKFN 610
+ F + L+ + L N ++
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTNPWD 314
Score = 145 bits (367), Expect = 2e-38
Identities = 54/280 (19%), Positives = 98/280 (35%), Gaps = 33/280 (11%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
++ L L++N ++ S+ VNL+ L L+ N I IEE +L L +
Sbjct: 53 AVKSLDLSNNRI-TYISN----SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQ-RWLERIILRGN-RLTTIEG 307
+N +++ S +L L++ N TL S S L+ + + T I+
Sbjct: 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167
Query: 308 GAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTH 367
F GL + L + + L + + + + L L + L T
Sbjct: 168 KDFAGLTFLEELEIDASDLQSY-----EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222
Query: 368 ITIFSFFQDFQKLKSLDLNGNFLINLESTGLED----------TLDNLNVRDNQITTLSS 417
++ L+L L + L T N+ + D + +
Sbjct: 223 -----------SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271
Query: 418 SALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
L +L+ S N LK + F + +L + L N
Sbjct: 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Score = 144 bits (364), Expect = 5e-38
Identities = 64/323 (19%), Positives = 108/323 (33%), Gaps = 71/323 (21%)
Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
++ LDLS+N+I I L+ C NL L + N +I
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE------------------- 92
Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
DSF S LE + L N L+ + F L+ + LNL N L +
Sbjct: 93 -----EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG----ETS 143
Query: 338 AFNGLAKIHILNLGYN-RLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLEST 396
F+ L K+ IL +G K+ F G L+ L+++
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLT-----------FLEELEID---------- 182
Query: 397 GLEDTLDNLNVRDNQITTLSSSALNY-KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
+ + + +L + ++ L L L ++ L L
Sbjct: 183 ------------ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230
Query: 456 RNA----HLSSLPVGGFDPLKK---LEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHL 508
H S L G + L K + + L + + +++ L L + N L
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-LNQISGLLELEFSRNQL 289
Query: 509 TEIPEMMFKNLLNLTYLDLSNNN 531
+P+ +F L +L + L N
Sbjct: 290 KSVPDGIFDRLTSLQKIWLHTNP 312
Score = 129 bits (325), Expect = 8e-33
Identities = 50/269 (18%), Positives = 99/269 (36%), Gaps = 39/269 (14%)
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
+ L+S+P G + ++ LDL+ + I +NL+ L L N + I E
Sbjct: 39 SSGSLNSIPSGLTE---AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95
Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSL 575
F +L +L +LDLS N + NL L S+ L+L N T + + + L
Sbjct: 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS----HLTKL 151
Query: 576 EELNLNNNE-LTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLK 634
+ L + N + T + F + L+ L++ + + + + + + + L Q
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211
Query: 635 TIDDYDYGYLPRLRKLNLNNNNIDAISET------------------------------- 663
+ + + L L + ++D +
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271
Query: 664 CFFNSSQLQIINLSFNRLEKLPERLFNTF 692
S L + S N+L+ +P+ +F+
Sbjct: 272 LLNQISGLLELEFSRNQLKSVPDGIFDRL 300
Score = 128 bits (324), Expect = 1e-32
Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 15/218 (6%)
Query: 483 GLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
L SIP + +K L L++N +T I + +NL L L++N I + S
Sbjct: 42 SLNSIPSGLTE---AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS 98
Query: 543 LPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSS-FTIHSKLKT 601
L S++ LDLS+N L+ +F SSL LNL N L +S F+ +KL+
Sbjct: 99 LGSLEHLDLSYNYLSNLSSSWFK-----PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153
Query: 602 LKLAFN-KFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAI 660
L++ F ++ GL++L+E+++ + L++ + + + L L+ +
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213
Query: 661 SETCFFNSSQLQIINLSFNRLE-----KLPERLFNTFL 693
E +S ++ + L L+ +L N+ +
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251
Score = 120 bits (303), Expect = 7e-30
Identities = 47/272 (17%), Positives = 85/272 (31%), Gaps = 40/272 (14%)
Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
+ L + N + + + FS +L+ L L+ N +L+ S F L +L L+L
Sbjct: 79 QALVLTSNGINTIEEDSFS-SLGSLEHLDLSYNYLS-NLSS----SWFKPLSSLTFLNLL 132
Query: 227 DNQIKAI-EEGILKGCDNLLELRMDHN-RFTSIPSVSLNGPRALRILSMAYNRIGTLKAD 284
N K + E + L LR+ + FT I G L L + + + + +
Sbjct: 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192
Query: 285 SFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAK 344
S S + + +IL + + + + + L L L+ + G N L K
Sbjct: 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252
Query: 345 IHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDN 404
L + L L+ +
Sbjct: 253 KFTFRNVKITDESLFQ---------VMKLLNQISGLLELEFS------------------ 285
Query: 405 LNVRDNQITTLSSSAL-NYKLLTKLDLSHNNL 435
NQ+ ++ L K+ L N
Sbjct: 286 ----RNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
Score = 73.6 bits (181), Expect = 4e-14
Identities = 27/183 (14%), Positives = 59/183 (32%), Gaps = 15/183 (8%)
Query: 153 ILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTS 212
+ +FS + + ++ K F+ L+EL + + L S
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDAS----DLQSYEPKS 193
Query: 213 EFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNR-----FTSIPSV---SLNG 264
+ N+ L L Q + E + ++ L + F+ + + SL
Sbjct: 194 -LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252
Query: 265 PRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
R + + + + L + N+L ++ G F+ L + + L N
Sbjct: 253 KFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Query: 325 RLN 327
+
Sbjct: 312 PWD 314
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 168 bits (427), Expect = 4e-47
Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 34/261 (13%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAH-LSSLPVGGFDPLKKLEVLDLAATG 483
T+L+L N L+ L F + L L+LS N L+ LDL+ G
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEM-MFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
+ ++ F L L++L H++L ++ E +F +L NL YLD+S+ + G G
Sbjct: 90 VITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 543 LPSMKRLDLSFNK-LTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKT 601
L S++ L ++ N F D F +L L+L+ +L L P++F
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFT-----ELRNLTFLDLSQCQLEQLSPTAFN------- 196
Query: 602 LKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAIS 661
LS LQ +++S+N ++D + Y L L+ L+ + N+I
Sbjct: 197 -----------------SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239
Query: 662 ETCFFN-SSQLQIINLSFNRL 681
+ + S L +NL+ N
Sbjct: 240 KQELQHFPSSLAFLNLTQNDF 260
Score = 165 bits (419), Expect = 5e-46
Identities = 59/267 (22%), Positives = 111/267 (41%), Gaps = 36/267 (13%)
Query: 291 WLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNL 350
R+ L N+L ++ G F+ L ++ L+L N L+ + G + L+L
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC---CSQSDFGTTSLKYLDL 85
Query: 351 GYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDN 410
+N + ++S+ F ++L+ LD + L + + +L NL
Sbjct: 86 SFNGVITMSSN------------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL----- 128
Query: 411 QITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP 470
LD+SH + + F + +L L ++ N+ + F
Sbjct: 129 ---------------IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173
Query: 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
L+ L LDL+ L+ + F+ L +L+ L ++HN+ + +K L +L LD S N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
Query: 531 NIVNLRVGSLYGLP-SMKRLDLSFNKL 556
+I+ + L P S+ L+L+ N
Sbjct: 234 HIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 137 bits (348), Expect = 3e-36
Identities = 59/315 (18%), Positives = 112/315 (35%), Gaps = 84/315 (26%)
Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
+ L+L N+++++ G+ L +L + N +
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG-------------------- 68
Query: 279 GTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGA 338
+ S L+ + L N + T+ F GL ++ L+ ++ L +++
Sbjct: 69 --CCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF----SV 121
Query: 339 FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGL 398
F L + L++ + + F G L+ L + GN + + L
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLS-----------SLEVLKMAGN---SFQENFL 167
Query: 399 EDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNA 458
D L + LT LDLS L++L PTAF ++ +L LN+S N
Sbjct: 168 PDIFTEL-----------------RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN- 209
Query: 459 HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKN 518
+ SL + L L+VLD + NH+ + ++
Sbjct: 210 NFFSLDTFPYKCLNSLQVLD------------------------YSLNHIMTSKKQELQH 245
Query: 519 LL-NLTYLDLSNNNI 532
+L +L+L+ N+
Sbjct: 246 FPSSLAFLNLTQNDF 260
Score = 135 bits (341), Expect = 2e-35
Identities = 55/218 (25%), Positives = 91/218 (41%), Gaps = 13/218 (5%)
Query: 477 LDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNI--VN 534
+ + GL S+P + L L N L +P +F L LT L LS+N +
Sbjct: 12 IRCNSKGLTSVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68
Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSS-F 593
S +G S+K LDLSFN + T ++ LE L+ ++ L + S F
Sbjct: 69 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL------EQLEHLDFQHSNLKQMSEFSVF 122
Query: 594 TIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ-LKTIDDYDYGYLPRLRKLNL 652
L L ++ + GLS L+ + ++ N + + L L L+L
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182
Query: 653 NNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
+ ++ +S T F + S LQ++N+S N L +
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220
Score = 129 bits (327), Expect = 2e-33
Identities = 55/258 (21%), Positives = 95/258 (36%), Gaps = 28/258 (10%)
Query: 162 SDIP--IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
+ IP RL+ N L+ L +F L +L L+ N S G +
Sbjct: 24 TGIPSSATRLELESNKLQSLPHGVFDKLTQ-LTKLSLSSNGLSFKGCCSQS---DFGTTS 79
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSL-NGPRALRILSMAYNRI 278
L+ LDLS N + + G + L L H+ + S+ R L L +++
Sbjct: 80 LKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138
Query: 279 GTLKADSFLSQRWLERIILRGNR-LTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
F LE + + GN F L + L+L +L +L
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-----SPT 193
Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES-- 395
AFN L+ + +LN+ +N L++ ++ + L+ LD + N ++ +
Sbjct: 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLN-----------SLQVLDYSLNHIMTSKKQE 242
Query: 396 -TGLEDTLDNLNVRDNQI 412
+L LN+ N
Sbjct: 243 LQHFPSSLAFLNLTQNDF 260
Score = 121 bits (306), Expect = 1e-30
Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 11/192 (5%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
++ LD S N + +S + L+ L + +L + S F L NL LD+
Sbjct: 80 LKYLDLSFNGVITMSSNFLGLEQ--LEHLDFQHS----NLKQMSEFSVFLSLRNLIYLDI 133
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRF-TSIPSVSLNGPRALRILSMAYNRIGTLKAD 284
S + GI G +L L+M N F + R L L ++ ++ L
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193
Query: 285 SFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAK 344
+F S L+ + + N +++ + L + +L+ N + Q + +
Sbjct: 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ----HFPSS 249
Query: 345 IHILNLGYNRLN 356
+ LNL N
Sbjct: 250 LAFLNLTQNDFA 261
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 173 bits (439), Expect = 2e-46
Identities = 85/475 (17%), Positives = 166/475 (34%), Gaps = 21/475 (4%)
Query: 189 DTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELR 248
+ L L+ N L + L LR+L LS N+I++++ + +L L
Sbjct: 52 PRTKALSLSQNSI-SELRM----PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106
Query: 249 MDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK-ADSFLSQRWLERIILRGNRLTTIEG 307
+ HNR +I + +LR L +++N L F + L + L + ++
Sbjct: 107 VSHNRLQNISCCPM---ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL 163
Query: 308 GAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTH 367
L I L + + +H++ + + + +
Sbjct: 164 LPVAHLHLSCI--LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221
Query: 368 ITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTK 427
S + + + + T L TL ++ L + +
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEY 280
Query: 428 LDLSHNNLKEL----EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATG 483
L++ + + E E T L + +N + ++ + L+ +
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340
Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL 543
I + +L N T+ L L L L N + N +L
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM-T 399
Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
+M L+ L + ++ S+ LNL++N LT K+K L
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCA-WAESILVLNLSSNMLTGSVFRCLP--PKVKVLD 456
Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
L N+ PK+ + L LQE+++++NQLK++ D + L L+ + L++N D
Sbjct: 457 LHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510
Score = 163 bits (414), Expect = 4e-43
Identities = 87/470 (18%), Positives = 174/470 (37%), Gaps = 24/470 (5%)
Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
+ L LS N I + + L LR+ HNR S+ + L L +++NR+
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 279 GTLKADSFLSQRWLERIILRGNRLTTI-EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
+ S L + L N + F L K+ L L + +L+
Sbjct: 113 QNISCCPMAS---LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169
Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNF--LINLES 395
+ + L+L + +++ Q + T+ L S+ +N + L +L+
Sbjct: 170 HLSCIL----LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225
Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKL-LTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
+ ++ +N ++ L+ + L ++ + +L F + +LN+
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL--FQFFWPRPVEYLNI 283
Query: 455 SRNAHLSSLPVGGFD----PLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
+ F LK L + + + + + L+ +
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343
Query: 511 IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
I + + + T+L+ + N + L ++ L L N L F TK
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK--- 400
Query: 571 NTSSLEELNLNNNELTY-LFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLS 629
N SSLE L+++ N L + + + L L+ N + ++ +DL
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLH 458
Query: 630 NNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679
NN++ +I D +L L++LN+ +N + ++ + F + LQ I L N
Sbjct: 459 NNRIMSIPK-DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 160 bits (406), Expect = 5e-42
Identities = 74/479 (15%), Positives = 157/479 (32%), Gaps = 39/479 (8%)
Query: 241 CDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGN 300
+ + + T +P + P + LS++ N I L+ L + L N
Sbjct: 30 NELESMVDYSNRNLTHVPK---DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN 86
Query: 301 RLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTF-----------------QGGAFNGLA 343
R+ +++ F + L++ +NRL ++ F L
Sbjct: 87 RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLT 146
Query: 344 KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLD 403
K+ L L + +L+ H++ +K + + N L +
Sbjct: 147 KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206
Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVP----TLLHLNLSRNAH 459
+L ++ + L + D + L TL H+ +
Sbjct: 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266
Query: 460 LSSLPVGGFDPLKKLEVLDLAATGL--KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK 517
+ P++ L + +L T + Y L +L + + E ++
Sbjct: 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326
Query: 518 NLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEE 577
+ LS ++ + + S L+ + N T +T L+
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST-----LKRLQT 381
Query: 578 LNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPK----ELILGLSYLQEIDLSNNQL 633
L L N L + + +L+ N + ++LS+N L
Sbjct: 382 LILQRNGLKNF-FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440
Query: 634 KTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTF 692
P+++ L+L+NN I +I + + LQ +N++ N+L+ +P+ +F+
Sbjct: 441 T--GSVFRCLPPKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRL 496
Score = 92.6 bits (230), Expect = 8e-20
Identities = 43/228 (18%), Positives = 85/228 (37%), Gaps = 16/228 (7%)
Query: 474 LEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIV 533
+ L L+ + + L L+ L L+HN + + +F +L YLD+S+N +
Sbjct: 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113
Query: 534 NLRVGSLYGLPSMKRLDLSFNKLTTFK-GDYFNTKSKPNTSSLEELNLNNNELTYLFPSS 592
N+ S + S++ LDLSFN F N + L L L+ + L
Sbjct: 114 NI---SCCPMASLRHLDLSFNDFDVLPVCKEFG-----NLTKLTFLGLSAAKFRQLDLLP 165
Query: 593 FTIHSKLKTLKLAFNKF---NYFPKELILGLSYLQEIDLSNNQLKTI---DDYDYGYLPR 646
H L + L + + L + + + + N L ++ + +
Sbjct: 166 VA-HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224
Query: 647 LRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLY 694
L + LN+ N + + ++N++ +E + F +
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272
Score = 79.1 bits (195), Expect = 1e-15
Identities = 36/179 (20%), Positives = 70/179 (39%), Gaps = 11/179 (6%)
Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNL 580
L LS N+I LR+ + L ++ L LS N++ + F LE L++
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL-----FNQDLEYLDV 107
Query: 581 NNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPK-ELILGLSYLQEIDLSNNQLKTIDDY 639
++N L + L+ L L+FN F+ P + L+ L + LS + + +D
Sbjct: 108 SHNRLQNISCCPMA---SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164
Query: 640 DYGYLP-RLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNY 697
+L L+L + +I +++L F+ ++ + +
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQI-PNTTVLHLVFHPNSLFSVQVNMSVNALGH 222
Score = 59.5 bits (144), Expect = 3e-09
Identities = 33/177 (18%), Positives = 64/177 (36%), Gaps = 15/177 (8%)
Query: 152 QILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFST 211
+ M S L+F+ N + S LQ L L N + +
Sbjct: 342 PFIHMVCPPSPS-SFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGL-KNFFKVALM 398
Query: 212 SEFHGLVNLRILDLSDNQIKAIEEGI----LKGCDNLLELRMDHNRFTSIPSVSLNGPRA 267
N+ L+ D + ++ +++L L + N T L P
Sbjct: 399 -----TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPK 451
Query: 268 LRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
+++L + NRI ++ D + L+ + + N+L ++ G F+ L + + L N
Sbjct: 452 VKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 164 bits (417), Expect = 1e-45
Identities = 60/289 (20%), Positives = 115/289 (39%), Gaps = 21/289 (7%)
Query: 415 LSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKL 474
+ N ++ ++LK+ + + + L+LS N LS + P KL
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKL 60
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
E+L+L++ L + L L+ L L +N++ E+ ++ L +NNNI
Sbjct: 61 ELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISR 113
Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYL-FPSSF 593
+ G K + L+ NK+T + S ++ L+L NE+ + F
Sbjct: 114 VSCSRGQGK---KNIYLANNKITMLRDLDEG-----CRSRVQYLDLKLNEIDTVNFAELA 165
Query: 594 TIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLN 653
L+ L L +N + + + L+ +DLS+N+L + ++ + ++L
Sbjct: 166 ASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLR 222
Query: 654 NNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNYDMAPN 702
NN + I + S L+ +L N R F + +A
Sbjct: 223 NNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270
Score = 156 bits (397), Expect = 9e-43
Identities = 51/312 (16%), Positives = 109/312 (34%), Gaps = 43/312 (13%)
Query: 284 DSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLA 343
+ + + + + L + L+L N L+++
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-----SAADLAPFT 58
Query: 344 KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLD 403
K+ +LNL N L + + L++LDLN N++ L +++
Sbjct: 59 KLELLNLSSNVLYETLD-------------LESLSTLRTLDLNNNYVQELLVGP---SIE 102
Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
L+ +N I+ +S S + + L++N + L + +L+L N + ++
Sbjct: 103 TLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTV 159
Query: 464 PVGGFDP-LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNL 522
LE L+L + + LK L L+ N L + F++ +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGP-EFQSAAGV 216
Query: 523 TYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNN 582
T++ L NN +V + +L +++ DL N + +L + N
Sbjct: 217 TWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGF--------------HCGTLRDFFSKN 261
Query: 583 NELTYLFPSSFT 594
+ + +
Sbjct: 262 QRVQTVAKQTVK 273
Score = 147 bits (373), Expect = 1e-39
Identities = 58/342 (16%), Positives = 112/342 (32%), Gaps = 34/342 (9%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
+I ++D+ +K + + N+ EL + N + I + L L +L++
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDT 333
+ N + LS L + L N + + I L+ N +++++
Sbjct: 66 SSNVLYETLDLESLST--LRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR 118
Query: 334 FQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL 393
QG + L N++ L +++ LDL N + +
Sbjct: 119 GQG--------KKNIYLANNKITMLRDLDEGC-----------RSRVQYLDLKLNEIDTV 159
Query: 394 ESTGLEDTLDN---LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLL 450
L + D LN++ N I + + L LDLS N L + P F + +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIYDVKGQVVF-AKLKTLDLSSNKLAFMGP-EFQSAAGVT 217
Query: 451 HLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
++L N L + + LE DL G F N + +A + +
Sbjct: 218 WISLRNN-KLVLIE-KALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKK 274
Query: 511 IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS 552
+ + T +L L ++
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316
Score = 145 bits (369), Expect = 6e-39
Identities = 51/338 (15%), Positives = 105/338 (31%), Gaps = 33/338 (9%)
Query: 191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMD 250
+ ++ D+ S N++ LDLS N + I L L L +
Sbjct: 12 YKIEKVTDSSL-----KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 251 HNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAF 310
N L LR L + N + L +E + N ++ +
Sbjct: 67 SNVLYETL--DLESLSTLRTLDLNNNYVQELLVGPS-----IETLHAANNNISRVSCSRG 119
Query: 311 NGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITI 370
G + L N++ L +++ L+L N + +
Sbjct: 120 QGK---KNIYLANNKITMLRD-----LDEGCRSRVQYLDLKLNEI----------DTVNF 161
Query: 371 FSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDL 430
L+ L+L NF+ +++ + L L++ N++ + + +T + L
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221
Query: 431 SHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQY 490
+N L + A L H +L N F ++++ + +K +
Sbjct: 222 RNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT--VKKLTGQ 278
Query: 491 QFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLS 528
+E ++P L+ L +
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316
Score = 145 bits (367), Expect = 1e-38
Identities = 56/342 (16%), Positives = 117/342 (34%), Gaps = 38/342 (11%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+ + ++L++ L + ++EL L+ N S ++ L +L+L
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWN-VKELDLSGNPLSQ-----ISAADLAPFTKLELLNL 65
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
S N + + L+ L L +++N + ++ L A N I +
Sbjct: 66 SSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSR 118
Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
+ I L N++T + +++ L+L N ++ +N +
Sbjct: 119 GQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----AASSDTL 171
Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLEST-GLEDTLDN 404
LNL YN + + F KLK+LDL+ N L + +
Sbjct: 172 EHLNLQYNFIYDVKGQVV-------------FAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218
Query: 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTA-FTNVPTLLHLNLSRNAHLSSL 463
+++R+N++ + + + L DL N F+ + + L+
Sbjct: 219 ISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAH 505
+ + A + +P D L+ L + H
Sbjct: 279 N---EEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 166 bits (422), Expect = 3e-43
Identities = 129/560 (23%), Positives = 209/560 (37%), Gaps = 86/560 (15%)
Query: 169 LDFSGNALR----RLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILD 224
+D S L +S L S L+ L L+++ S+ S F +L LD
Sbjct: 55 IDLSSKPLNVGFSAVSSSLLSLTG--LESLFLSNSHINGSV------SGFKCSASLTSLD 106
Query: 225 LSDNQIK-AIEEGI-LKGCDNLLELRMDHNRFT-SIPSVSLNGPRALRILSMAYNRI-GT 280
LS N + + L C L L + N +L +L ++ N I G
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166
Query: 281 LKADSFLSQRW--LERIILRGNRLT-TIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
LS L+ + + GN+++ ++ + + L++ N + G
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFS--------TG 215
Query: 338 --AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLI-NLE 394
+ + L++ N+L+ G +LK L+++ N + +
Sbjct: 216 IPFLGDCSALQHLDISGNKLS--------G---DFSRAISTCTELKLLNISSNQFVGPIP 264
Query: 395 STGLEDTLDNLNVRDNQIT-TLSSS-ALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHL 452
L+ L L++ +N+ T + + LT LDLS N+ P F + L L
Sbjct: 265 PLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323
Query: 453 NLSRNAHLS-SLPVGGFDPLKKLEVLDLAATGLK-SIPQYQFDELLNLKYLCLAHNHLT- 509
LS N + S LP+ ++ L+VLDL+ +P+ + +L L L+ N+ +
Sbjct: 324 ALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 510 EIPEMMFKNLL-NLTYLDLSNNNIVNLRVG----SLYGLPSMKRLDLSFNKLTTFKG--- 561
I + +N L L L NN G +L + L LSFN L+ G
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGF----TGKIPPTLSNCSELVSLHLSFNYLS---GTIP 435
Query: 562 DYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFN-YFPKELILGL 620
+ S L +L L N L P L+TL L FN P L
Sbjct: 436 SSLG-----SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NC 489
Query: 621 SYLQEIDLSNNQL-----KTIDDYDYGYLPRLRKLNLNNNNID-AISETCFFNSSQLQII 674
+ L I LSNN+L K I G L L L L+NN+ I + L +
Sbjct: 490 TNLNWISLSNNRLTGEIPKWI-----GRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWL 543
Query: 675 NLSFNRLE-KLPERLFNTFL 693
+L+ N +P +F
Sbjct: 544 DLNTNLFNGTIPAAMFKQSG 563
Score = 151 bits (384), Expect = 2e-38
Identities = 119/535 (22%), Positives = 184/535 (34%), Gaps = 88/535 (16%)
Query: 191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIK-AIEEGILKGCDNLLELRM 249
L+ L ++ N F + L+ LD+S N++ I C L L +
Sbjct: 202 LEFLDVSSNNFSTGI------PFLGDCSALQHLDISGNKLSGDFSRAIST-CTELKLLNI 254
Query: 250 DHNRFT-SIPSVSLNGPRALRILSMAYNRI-GTLKADSFLSQRWLERIILRGNRLT-TIE 306
N+F IP + L ++L+ LS+A N+ G + + L + L GN +
Sbjct: 255 SSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 307 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGT 366
+ + + L L N S + + +L+L +N S
Sbjct: 312 PFFGS-CSLLESLALSSNNF----SGELPMDTLLKMRGLKVLDLSFNEF----SGELP-- 360
Query: 367 HITIFSFFQDFQKLKSLDLNGNFLI-----NLESTGLEDTLDNLNVRDNQIT-TLSSSAL 420
S L +LDL+ N NL TL L +++N T + +
Sbjct: 361 ----ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN-TLQELYLQNNGFTGKIPPTLS 415
Query: 421 NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLS-SLPVGGFDPLKKLEVLDL 479
N L L LS N L P++ ++ L L L N L +P +K LE L L
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIP-QELMYVKTLETLIL 473
Query: 480 AATGLK-SIPQYQFDELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNNIVNLRV 537
L IP NL ++ L++N LT EIP+ L NL L LSNN+
Sbjct: 474 DFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNS------ 525
Query: 538 GSLYG--------LPSMKRLDLSFNKLT-----------------TFKGDYFNTKSKPNT 572
G S+ LDL+ N G +
Sbjct: 526 --FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583
Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
N E + S + + + +D+S N
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643
Query: 633 L-----KTIDDYDYGYLPRLRKLNLNNNNID-AISETCFFNSSQLQIINLSFNRL 681
L K I G +P L LNL +N+I +I + + L I++LS N+L
Sbjct: 644 LSGYIPKEI-----GSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNKL 692
Score = 120 bits (302), Expect = 3e-28
Identities = 64/279 (22%), Positives = 108/279 (38%), Gaps = 27/279 (9%)
Query: 425 LTKLDLSHNNLKELE---PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA 481
+T +DLS L ++ ++ L L LS + S+ GF L LDL+
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLDLSR 109
Query: 482 TGLK-SIP-QYQFDELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNNI---VNL 535
L + LK+L ++ N L L +L LDLS N+I +
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169
Query: 536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTI 595
G +K L +S NK++ +LE L++++N + P
Sbjct: 170 GWVLSDGCGELKHLAISGNKIS-------GDVDVSRCVNLEFLDVSSNNFSTGIP-FLGD 221
Query: 596 HSKLKTLKLAFNKFN-YFPKELILGLSYLQEIDLSNNQLK-TIDDYDYGYLPRLRKLNLN 653
S L+ L ++ NK + F + I + L+ +++S+NQ I L L+ L+L
Sbjct: 222 CSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLA 277
Query: 654 NNNID-AISETCFFNSSQLQIINLSFNRLE-KLPERLFN 690
N I + L ++LS N +P +
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Score = 114 bits (288), Expect = 2e-26
Identities = 105/502 (20%), Positives = 181/502 (36%), Gaps = 70/502 (13%)
Query: 154 LPMQIFSSSDIPIRRLDFSGNALR-RLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTS 212
+P S ++ L + N + D L TL L L+ N F ++ P
Sbjct: 263 IPPLPLKS----LQYLSLAENKFTGEIPDFLSGACD-TLTGLDLSGNHFYGAVPP----- 312
Query: 213 EFHGLVNLRILDLSDNQIK-AIEEGILKGCDNLLELRMDHNRFT-SIPSVSLNGPRALRI 270
F L L LS N + L L L + N F+ +P N +L
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 271 LSMAYNRI-GTLKAD-SFLSQRWLERIILRGNRLT-TIEGGAFNGLAKIHILNLGYNRLN 327
L ++ N G + + + L+ + L+ N T I N +++ L+L +N L+
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLS 431
Query: 328 -KLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLN 386
+ S L+K+ L L N +G I + L++L L+
Sbjct: 432 GTIPSS------LGSLSKLRDLKLWLNM--------LEGE---IPQELMYVKTLETLILD 474
Query: 387 GNFL--------INLESTGLEDTLDNLNVRDNQIT-TLSSSALNYKLLTKLDLSHNNLKE 437
N L N + L+ +++ +N++T + + L L LS+N+
Sbjct: 475 FNDLTGEIPSGLSNCTN------LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528
Query: 438 LEPTAFTNVPTLLHLNLSRNAHLS-SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELL 496
P + +L+ L+L+ N + ++P F K+ +A I +
Sbjct: 529 NIPAELGDCRSLIWLDLNTN-LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587
Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
+ I L ++++ + SM LD+S+N L
Sbjct: 588 HGA---GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644
Query: 557 TTFKGDYFNTKSKPNT----SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFN-Y 611
+ G P L LNL +N+++ P L L L+ NK +
Sbjct: 645 S---GYI------PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 612 FPKELILGLSYLQEIDLSNNQL 633
P+ + L+ L EIDLSNN L
Sbjct: 696 IPQAMS-ALTMLTEIDLSNNNL 716
Score = 59.9 bits (146), Expect = 2e-09
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 7/118 (5%)
Query: 571 NTSSLEELNLNNNELTYLF---PSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEID 627
+ ++L++ L F SS + L++L L+ + N + L +D
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106
Query: 628 LSNNQLK-TI-DDYDYGYLPRLRKLNLNNNNID-AISETCFFNSSQLQIINLSFNRLE 682
LS N L + G L+ LN+++N +D + + L++++LS N +
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 158 bits (401), Expect = 4e-42
Identities = 80/439 (18%), Positives = 159/439 (36%), Gaps = 78/439 (17%)
Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
+L L S N + + E +L L +D+N ++ + P L L ++ N++
Sbjct: 92 HLESLVASCNSLTELPELP----QSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQL 143
Query: 279 GTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGA 338
L S L+ I + N L + + + + G N+L +L
Sbjct: 144 EKLPELQNSSF--LKIIDVDNNSLKKL----PDLPPSLEFIAAGNNQLEELPE------- 190
Query: 339 FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGL 398
L + + N L KL L+S+ N L L
Sbjct: 191 LQNLPFLTAIYADNNSLKKL---------------PDLPLSLESIVAGNNILEELPELQN 235
Query: 399 EDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNA 458
L + +N + TL + L L++ N L +L P + L L++S N
Sbjct: 236 LPFLTTIYADNNLLKTLPDLPPS---LEALNVRDNYLTDL-PELPQS---LTFLDVSEN- 287
Query: 459 HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKN 518
S L + L L+ ++ ++S+ D +L+ L +++N L E+P
Sbjct: 288 IFSGLS----ELPPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIELPA----L 335
Query: 519 LLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEEL 578
L L S N++ + ++K+L + +N L F S+E+L
Sbjct: 336 PPRLERLIASFNHLAEVP----ELPQNLKQLHVEYNPLREF---------PDIPESVEDL 382
Query: 579 NLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDD 638
+N++ L + LK L + N FP ++++ +++ ++ +
Sbjct: 383 RMNSH-LAEVPELP----QNLKQLHVETNPLREFPDI----PESVEDLRMNSERVVDPYE 433
Query: 639 YDYGYLPRLRKLNLNNNNI 657
+ + +L +++
Sbjct: 434 FAHETTDKLEDDVFEHHHH 452
Score = 154 bits (391), Expect = 8e-41
Identities = 95/451 (21%), Positives = 162/451 (35%), Gaps = 81/451 (17%)
Query: 240 GCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRG 299
L E + T +P ++ A++ QR + LR
Sbjct: 9 SNTFLQEPLRHSSNLTEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67
Query: 300 NRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLN 359
+ H L L L+ L + L N L +L
Sbjct: 68 CLDR-----------QAHELELNNLGLSSLPEL---------PPHLESLVASCNSLTELP 107
Query: 360 SDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSA 419
+ Q LKSL ++ N L L + L L+ L V +NQ+ L
Sbjct: 108 ---------------ELPQSLKSLLVDNNNLKAL--SDLPPLLEYLGVSNNQLEKLPELQ 150
Query: 420 LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
N L +D+ +N+LK+L P + L + N L LP L L +
Sbjct: 151 -NSSFLKIIDVDNNSLKKL-PDLPPS---LEFIAAGNN-QLEELPE--LQNLPFLTAIYA 202
Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539
LK +P D L+L+ + +N L E+PE +NL LT + NN + L
Sbjct: 203 DNNSLKKLP----DLPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDL- 255
Query: 540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKL 599
PS++ L++ N LT + + + L+ + L+ L P+ L
Sbjct: 256 ---PPSLEALNVRDNYLTDL------PELPQSLTFLDVSENIFSGLSELPPN-------L 299
Query: 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDA 659
L + N+ L+E+++SNN+L + PRL +L + N++
Sbjct: 300 YYLNASSNEIRSLCDLP----PSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAE 351
Query: 660 ISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
+ E L+ +++ +N L + P+ +
Sbjct: 352 VPELP----QNLKQLHVEYNPLREFPDIPES 378
Score = 153 bits (389), Expect = 2e-40
Identities = 91/528 (17%), Positives = 185/528 (35%), Gaps = 92/528 (17%)
Query: 162 SDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLV--- 218
S+ ++ + L + + + + E A + + + P +
Sbjct: 9 SNTFLQEPLRHSSNLTEMPVEAE--NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66
Query: 219 -----NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
L+L++ + ++ E +L L N T +P ++L + +
Sbjct: 67 DCLDRQAHELELNNLGLSSLPELP----PHLESLVASCNSLTELPE-LPQSLKSLLVDNN 121
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDT 333
+ L LE + + N+L + + + I+++ N L KL
Sbjct: 122 NLKALSDLPPL-------LEYLGVSNNQLEKL--PELQNSSFLKIIDVDNNSLKKL---- 168
Query: 334 FQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL 393
+ + + G N+L +L Q+ L ++ + N L L
Sbjct: 169 -----PDLPPSLEFIAAGNNQLEELPE-------------LQNLPFLTAIYADNNSLKKL 210
Query: 394 ESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLN 453
L +L+++ +N + L N LT + +N LK L P+L LN
Sbjct: 211 PDLPL--SLESIVAGNNILEELPELQ-NLPFLTTIYADNNLLKTLPDL----PPSLEALN 263
Query: 454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE 513
+ N +L+ LP L L+V + +GL +P NL YL + N + + +
Sbjct: 264 VRDN-YLTDLP-ELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIRSLCD 314
Query: 514 MMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTS 573
+L L++SNN ++ L P ++RL SFN L
Sbjct: 315 ----LPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVP---------ELPQ 357
Query: 574 SLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQL 633
+L++L++ N L P ++ L++ + P+ L+++ + N L
Sbjct: 358 NLKQLHVEYNPLREF-PDIP---ESVEDLRM-NSHLAEVPELP----QNLKQLHVETNPL 408
Query: 634 KTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRL 681
+ D + L +N+ + E + +L+ +
Sbjct: 409 REFPDI----PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452
Score = 147 bits (374), Expect = 2e-38
Identities = 90/446 (20%), Positives = 166/446 (37%), Gaps = 84/446 (18%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+ L S N+L L + S L+ L + +N +L + L L +
Sbjct: 93 LESLVASCNSLTELPELPQS-----LKSLLVDNN----NLKALSDLPP-----LLEYLGV 138
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
S+NQ++ + E L+ L + +D+N +P + P +L ++ N++ L
Sbjct: 139 SNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLEELPELQ 192
Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
L L I N L + + + + G N L +L L +
Sbjct: 193 NLPF--LTAIYADNNSLKKL----PDLPLSLESIVAGNNILEELPE-------LQNLPFL 239
Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNL 405
+ N L L L++L++ N+L +L L +L L
Sbjct: 240 TTIYADNNLLKTLPDL---------------PPSLEALNVRDNYLTDLPE--LPQSLTFL 282
Query: 406 NVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPV 465
+V +N + LS N L L+ S N ++ L P+L LN+S N L LP
Sbjct: 283 DVSENIFSGLSELPPN---LYYLNASSNEIRSL----CDLPPSLEELNVSNN-KLIELPA 334
Query: 466 GGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYL 525
+LE L + L +P + NLK L + +N L E P++ ++ L
Sbjct: 335 L----PPRLERLIASFNHLAEVP----ELPQNLKQLHVEYNPLREFPDIPE----SVEDL 382
Query: 526 DLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNEL 585
++++ + ++K+L + N L F S+E+L +N+ +
Sbjct: 383 RMNSHLAEVPEL-----PQNLKQLHVETNPLREFP---------DIPESVEDLRMNSERV 428
Query: 586 TYLFPSSFTIHSKLKTLKLAFNKFNY 611
+ + KL+ + ++
Sbjct: 429 VDPYEFAHETTDKLEDDVFEHHHHHH 454
Score = 145 bits (369), Expect = 8e-38
Identities = 84/406 (20%), Positives = 154/406 (37%), Gaps = 57/406 (14%)
Query: 287 LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIH 346
+S +L+ + + LT + A N + ++ + G +A
Sbjct: 8 VSNTFLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGN--GEQREMAVSR 64
Query: 347 ILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL--ESTGLEDTLDN 404
+ + + ++L ++ S + L+SL + N L L L+ +L
Sbjct: 65 LRDCLDRQAHELE---LNNLGLS--SLPELPPHLESLVASCNSLTELPELPQSLK-SLLV 118
Query: 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLP 464
N ++ L L L +S+N L++L N L +++ N L LP
Sbjct: 119 DNNNLKALSDLPPL------LEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNN-SLKKLP 169
Query: 465 VGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTY 524
LE + L+ +P+ L L + +N L ++P+ L+L
Sbjct: 170 DL----PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPD----LPLSLES 219
Query: 525 LDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNE 584
+ NN + L L LP + + N L T SLE LN+ +N
Sbjct: 220 IVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLP---------DLPPSLEALNVRDNY 268
Query: 585 LTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYL 644
LT L P L L ++ N F+ + L ++ S+N+++++ D
Sbjct: 269 LTDL-PELP---QSLTFLDVSENIFSGLSELP----PNLYYLNASSNEIRSLCDL----P 316
Query: 645 PRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
P L +LN++NN + + +L+ + SFN L ++PE N
Sbjct: 317 PSLEELNVSNNKLIELPALP----PRLERLIASFNHLAEVPELPQN 358
Score = 126 bits (319), Expect = 3e-31
Identities = 62/301 (20%), Positives = 112/301 (37%), Gaps = 44/301 (14%)
Query: 390 LINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTL 449
IN + L + +T + A N K T+ + + + P +
Sbjct: 2 FINPRNVSN-TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60
Query: 450 LHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT 509
L ++ L+L GL S+P + +L+ L + N LT
Sbjct: 61 AVSRLRDC------------LDRQAHELELNNLGLSSLP----ELPPHLESLVASCNSLT 104
Query: 510 EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSK 569
E+PE + ++L +L + + + +L P ++ L +S N+L
Sbjct: 105 ELPE-LPQSLKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKL-------PEL 149
Query: 570 PNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLS 629
N+S L+ ++++NN L L P L+ + N+ P+ + L +L I
Sbjct: 150 QNSSFLKIIDVDNNSLKKL-PDLPP---SLEFIAAGNNQLEELPE--LQNLPFLTAIYAD 203
Query: 630 NNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
NN LK + D L + NN ++ + E N L I N L+ LP+
Sbjct: 204 NNSLKKLPD----LPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDLPP 257
Query: 690 N 690
+
Sbjct: 258 S 258
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 152 bits (387), Expect = 3e-40
Identities = 74/424 (17%), Positives = 130/424 (30%), Gaps = 60/424 (14%)
Query: 267 ALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRL 326
A + S L + + +T + G L + L N +
Sbjct: 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNI 76
Query: 327 NKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLN 386
L+ + + L N+L L+ KL L+ +
Sbjct: 77 TTLD--------LSQNTNLTYLACDSNKLTNLD--------------VTPLTKLTYLNCD 114
Query: 387 GNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNV 446
N L L+ + L LN N +T + S + LT+LD N + T
Sbjct: 115 TNKLTKLDVSQNPL-LTYLNCARNTLTEIDVS--HNTQLTELDCHLNKK--ITKLDVTPQ 169
Query: 447 PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
L L+ S N ++ L V K L L+ + + ++ + L +L + N
Sbjct: 170 TQLTTLDCSFN-KITELDVSQ---NKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSN 222
Query: 507 HLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNT 566
LTEI L LTY D S N + L + L + L L
Sbjct: 223 KLTEID---VTPLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLLEI------- 269
Query: 567 KSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEI 626
+ + L + T +++L L + L +
Sbjct: 270 -DLTHNTQLIYFQAEGC--RKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYL 323
Query: 627 DLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPE 686
L+N +L +D + +L+ L+ N +I S + L + + +P+
Sbjct: 324 YLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSSVGKIPA--LNNNFEAEGQTITMPK 378
Query: 687 RLFN 690
Sbjct: 379 ETLT 382
Score = 152 bits (386), Expect = 5e-40
Identities = 91/461 (19%), Positives = 149/461 (32%), Gaps = 65/461 (14%)
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
L L LD ++ I + ++ L +L N T++ L+ L L+
Sbjct: 38 EEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTLD---LSQNTNLTYLAC 92
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDT 333
N++ L L + N+LT ++ + + LN N L +++
Sbjct: 93 DSNKLTNLDVTPLTK---LTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID--- 143
Query: 334 FQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL 393
+ ++ L+ N +L +LD + N + L
Sbjct: 144 -----VSHNTQLTELDCHLN-------------KKITKLDVTPQTQLTTLDCSFNKITEL 185
Query: 394 ESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLN 453
+ + + L+ LN N IT L + LT LD S N L E++ T + L + +
Sbjct: 186 DVSQNK-LLNRLNCDTNNITKLDLNQN--IQLTFLDCSSNKLTEID---VTPLTQLTYFD 239
Query: 454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE 513
S N L+ L V KL L T L I L Y +I E
Sbjct: 240 CSVN-PLTELDVSTL---SKLTTLHCIQTDLLEID---LTHNTQLIYFQA--EGCRKIKE 290
Query: 514 MMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTS 573
+ + L LD I L L P + L L+ +LT + +
Sbjct: 291 LDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTELDVS--------HNT 339
Query: 574 SLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLS-----YLQEIDL 628
L+ L+ N + SS L A + PKE + S +D
Sbjct: 340 KLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQ 397
Query: 629 SNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSS 669
N + Y + N + D + T F S
Sbjct: 398 FGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSE 438
Score = 94.8 bits (236), Expect = 1e-20
Identities = 48/216 (22%), Positives = 77/216 (35%), Gaps = 24/216 (11%)
Query: 470 PLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN 529
P AA +++ ++L L L ++ +T++ + L LT L ++
Sbjct: 16 PDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTS 73
Query: 530 NNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLF 589
NNI L L ++ L NKLT + L LN + N+LT L
Sbjct: 74 NNITTL---DLSQNTNLTYLACDSNKLTNL--------DVTPLTKLTYLNCDTNKLTKLD 122
Query: 590 PSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRK 649
S L L A N + + L E+D N+ T D +L
Sbjct: 123 VSQNP---LLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174
Query: 650 LNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLP 685
L+ + N I + + L +N N + KL
Sbjct: 175 LDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD 207
Score = 79.7 bits (197), Expect = 7e-16
Identities = 46/288 (15%), Positives = 77/288 (26%), Gaps = 45/288 (15%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+ LD N D L L + N + + L L+
Sbjct: 150 LTELDCHLNKKITKLDVTPQTQ---LTTLDCSFNKI--------TELDVSQNKLLNRLNC 198
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
N I ++ L L L N+ T I + L + N + L +
Sbjct: 199 DTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVST 252
Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
L + L I+ L + K+ ++
Sbjct: 253 LSK---LTTLHCIQTDLLEIDLTHNTQL-----IYFQAEGCRKIKE-----LDVTHNTQL 299
Query: 346 HILNLGYNRLNKLNSDTFQ--------GTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
++L+ + +L+ T +T KLKSL + + S G
Sbjct: 300 YLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDV-SHNTKLKSLSCVNAHIQDFSSVG 358
Query: 398 LEDTLDNLNVRDNQITTLSSSALNYKLLT------KLDLSHNNLKELE 439
L+N + Q T+ L LT LD N +
Sbjct: 359 KIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEP 406
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 142 bits (361), Expect = 2e-38
Identities = 58/239 (24%), Positives = 107/239 (44%), Gaps = 36/239 (15%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
LDLS N L+ L +F + P L L+LSR + ++ G + L
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLS------------ 76
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
+L L L N + + F L +L L N+ +L + L
Sbjct: 77 ------------HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124
Query: 545 SMKRLDLSFNKLTTFKG-DYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLK--- 600
++K L+++ N + +FK +YF+ N ++LE L+L++N++ ++ + + ++
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFS-----NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 601 -TLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
+L L+ N N+ + L+E+ L NQLK++ D + L L+K+ L+ N D
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237
Score = 132 bits (335), Expect = 9e-35
Identities = 63/236 (26%), Positives = 99/236 (41%), Gaps = 29/236 (12%)
Query: 252 NRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFN 311
F IP N P + + L +++N + L + SF S L+ + L + TIE GA+
Sbjct: 17 LNFYKIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73
Query: 312 GLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIF 371
L+ + L L N + L GAF+GL+ + L L L +
Sbjct: 74 SLSHLSTLILTGNPIQSL-----ALGAFSGLSSLQKLVAVETNLASLENFPIGHLK---- 124
Query: 372 SFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNL---NVRDNQITTLSSSALNY-----K 423
LK L++ N + + + L NL ++ N+I ++ + L
Sbjct: 125 -------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177
Query: 424 LLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
L LDLS N + ++P AF + L L L N L S+P G FD L L+ + L
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTN-QLKSVPDGIFDRLTSLQKIWL 231
Score = 125 bits (315), Expect = 4e-32
Identities = 47/268 (17%), Positives = 86/268 (32%), Gaps = 62/268 (23%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
+ + L L+ N L F L++LDLS +I+ IE+G + +L L +
Sbjct: 29 STKNLDLSFNPLR-HLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
N S+ + +G +L+ L L ++E
Sbjct: 84 TGNPIQSLALGAFSGLSSLQKLV------------------------AVETNLASLENFP 119
Query: 310 FNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHIT 369
L + LN+ +N + F+ L + L+L N++ + +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLP----EYFSNLTNLEHLDLSSNKIQSIYCTDLRV---- 171
Query: 370 IFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLD 429
L + L L++ N + + A L +L
Sbjct: 172 --------------------LHQMPLLNLS-----LDLSLNPMNFIQPGAFKEIRLKELA 206
Query: 430 LSHNNLKELEPTAFTNVPTLLHLNLSRN 457
L N LK + F + +L + L N
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 123 bits (310), Expect = 2e-31
Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 14/213 (6%)
Query: 483 GLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
IP + K L L+ N L + F + L LDLS I + G+
Sbjct: 18 NFYKIPDNLPF---STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 543 LPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTL 602
L + L L+ N + + F+ SSL++L L L LK L
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFS-----GLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 603 KLAFNKFNYFPK-ELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLR----KLNLNNNNI 657
+A N F E L+ L+ +DLS+N++++I D L ++ L+L+ N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189
Query: 658 DAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
+ I F +L+ + L N+L+ +P+ +F+
Sbjct: 190 NFIQPGA-FKEIRLKELALDTNQLKSVPDGIFD 221
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 144 bits (364), Expect = 4e-38
Identities = 50/258 (19%), Positives = 90/258 (34%), Gaps = 34/258 (13%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLA-ATG 483
+L L+ ++ AF+ L + +S+N L + F L KL + + A
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91
Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLS-NNNIVNLRVGSLYG 542
L I F L NL+YL +++ + +P++ + L LD+ N NI + S G
Sbjct: 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151
Query: 543 LPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTL 602
L + L LN N + + S+F +
Sbjct: 152 L----------------------------SFESVILWLNKNGIQEIHNSAFNGTQLDELN 183
Query: 603 KLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE 662
N P ++ G S +D+S ++ ++ Y L +LR + N
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL----KKL 239
Query: 663 TCFFNSSQLQIINLSFNR 680
L +L++
Sbjct: 240 PTLEKLVALMEASLTYPS 257
Score = 135 bits (342), Expect = 4e-35
Identities = 61/284 (21%), Positives = 104/284 (36%), Gaps = 47/284 (16%)
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNR-LTTIEGG 308
++ T IPS + PR L ++ ++ +F LE+I + N L IE
Sbjct: 17 QESKVTEIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73
Query: 309 AFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHI 368
F+ L K+H + + + N L AF L + L + + L +
Sbjct: 74 VFSNLPKLHEIRI--EKANNLLY--INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL- 128
Query: 369 TIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNY--KLLT 426
+ LD+ N I T+ ++
Sbjct: 129 ----------QKVLLDIQDN---------------------INIHTIERNSFVGLSFESV 157
Query: 427 KLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKS 486
L L+ N ++E+ +AF N L LNLS N +L LP F +LD++ T + S
Sbjct: 158 ILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216
Query: 487 IPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
+P Y + L L+ +L ++P + L+ L L+
Sbjct: 217 LPSYGLENLKKLRARST--YNLKKLP--TLEKLVALMEASLTYP 256
Score = 128 bits (323), Expect = 1e-32
Identities = 44/269 (16%), Positives = 90/269 (33%), Gaps = 46/269 (17%)
Query: 290 RWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILN 349
R + +L I+ GAF+G + + + N + + + F+ L K+H +
Sbjct: 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV----LEVIEADVFSNLPKLHEIR 85
Query: 350 L-GYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVR 408
+ N L +N + FQ L+ L ++
Sbjct: 86 IEKANNLLYINPEAFQNLP-----------NLQYLLISNT-------------------- 114
Query: 409 DNQITTLSSSALNYKL-LTKLDLSHNN-LKELEPTAFTNVPTLLH-LNLSRNAHLSSLPV 465
I L + L LD+ N + +E +F + L L++N + +
Sbjct: 115 --GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHN 171
Query: 466 GGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYL 525
F+ + E+ L+ +P F L ++ + +P +NL L
Sbjct: 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 231
Query: 526 DLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
N ++ +L L ++ L++
Sbjct: 232 STYNLK----KLPTLEKLVALMEASLTYP 256
Score = 120 bits (303), Expect = 5e-30
Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 12/220 (5%)
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIV- 533
V + + IP D N L L I + F +L +++S N+++
Sbjct: 12 RVFLCQESKVTEIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68
Query: 534 NLRVGSLYGLPSMKRLDLS-FNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSS 592
+ LP + + + N L + F N +L+ L ++N + +L
Sbjct: 69 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ-----NLPNLQYLLISNTGIKHLPDVH 123
Query: 593 FTIHSKLKTLKLAFN-KFNYFPKELILGLSY-LQEIDLSNNQLKTIDDYDYGYLPRLRKL 650
+ L + N + + +GLS+ + L+ N ++ I + +
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183
Query: 651 NLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
+NNN++ + F +S I+++S R+ LP
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE 223
Score = 119 bits (301), Expect = 1e-29
Identities = 48/242 (19%), Positives = 85/242 (35%), Gaps = 24/242 (9%)
Query: 162 SDIP--IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
SD+P L F LR + FS D L+++ ++ N + + F L
Sbjct: 26 SDLPRNAIELRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEVIEA----DVFSNLPK 80
Query: 220 LRILDLSD-NQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN-R 277
L + + N + I + NL L + + +P V +L + N
Sbjct: 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140
Query: 278 IGTLKADSFLS-QRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 336
I T++ +SF+ + L N + I AFNG + N L +L +D
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND---- 196
Query: 337 GAFNGLAKIHILNLGYNRLNKLNSDTFQGT---------HITIFSFFQDFQKLKSLDLNG 387
F+G + IL++ R++ L S + ++ + L L
Sbjct: 197 -VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255
Query: 388 NF 389
Sbjct: 256 PS 257
Score = 115 bits (290), Expect = 3e-28
Identities = 55/291 (18%), Positives = 96/291 (32%), Gaps = 68/291 (23%)
Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
N L +++ I++G G +L ++ + N
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE---------------------- 68
Query: 279 GTLKADSFLSQRWLERI-ILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
++AD F + L I I + N L I AF L + L + +
Sbjct: 69 -VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-----HLPDV 122
Query: 338 AFNGLAKIHILNLGYN-RLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLEST 396
+ +L++ N ++ + ++F
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFV-------------------------------- 150
Query: 397 GLEDTLDNLNVRDNQITTLSSSALNY-KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
GL L + N I + +SA N +L +NNL+EL F + L++S
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
R + SLP G + LKKL LK +P ++L+ L L +
Sbjct: 211 RT-RIHSLPSYGLENLKKLRARST--YNLKKLP--TLEKLVALMEASLTYP 256
Score = 114 bits (288), Expect = 6e-28
Identities = 58/298 (19%), Positives = 99/298 (33%), Gaps = 56/298 (18%)
Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
R + + + L ELR + F G +L +++S
Sbjct: 12 RVFLCQESKVTEIPSDLPR----NAIELRFVLTKL-----RVIQKGAFSGFGDLEKIEIS 62
Query: 227 DNQI-KAIEEGILKGCDNLLELRMDH-NRFTSIPSVSLNGPRALRILSMAYNRIGTLKAD 284
N + + IE + L E+R++ N I + L+ L ++ I L
Sbjct: 63 QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 122
Query: 285 SFLSQRWLERIILRGN-RLTTIEGGAFNGL-AKIHILNLGYNRLNKLNSDTFQGGAFNGL 342
+ + ++ N + TIE +F GL + IL L N + ++ AFNG
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-----HNSAFNGT 177
Query: 343 AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTL 402
+ N L +L +D F G
Sbjct: 178 QLDELNLSDNNNLEELPNDVFHG------------------------ASGPV-------- 205
Query: 403 DNLNVRDNQITTLSSSALNYKLLTKLD-LSHNNLKELEPTAFTNVPTLLHLNLSRNAH 459
L++ +I +L S L L KL S NLK+L + L+ +L+ +H
Sbjct: 206 -ILDISRTRIHSLPSYGLEN--LKKLRARSTYNLKKLPT--LEKLVALMEASLTYPSH 258
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 143 bits (363), Expect = 4e-36
Identities = 75/359 (20%), Positives = 123/359 (34%), Gaps = 60/359 (16%)
Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNL 405
+LN+G + L L + +L + N L +L + L L
Sbjct: 43 AVLNVGESGLTTLPDC--------------LPAHITTLVIPDNNLTSLPALP--PELRTL 86
Query: 406 NVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPV 465
V NQ+T+L L+ +L L P+ L L + N L+SLPV
Sbjct: 87 EVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL-PSG------LCKLWIFGN-QLTSLPV 138
Query: 466 GGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYL 525
L+ L ++ L S+P L L +N LT +P L L
Sbjct: 139 L----PPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTSLPM----LPSGLQEL 186
Query: 526 DLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT-SSLEELNLNNNE 584
+S+N + +L + +L N+LT+ P S L+EL ++ N
Sbjct: 187 SVSDNQLASLPTL----PSELYKLWAYNNRLTSL----------PALPSGLKELIVSGNR 232
Query: 585 LTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYL 644
LT L S+LK L ++ N+ P S L + + NQL + + +L
Sbjct: 233 LTSLPVL----PSELKELMVSGNRLTSLPMLP----SGLLSLSVYRNQLTRLPE-SLIHL 283
Query: 645 PRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNYDMAPNL 703
+NL N + + + + R + + A L
Sbjct: 284 SSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342
Score = 133 bits (337), Expect = 6e-33
Identities = 79/392 (20%), Positives = 128/392 (32%), Gaps = 70/392 (17%)
Query: 298 RGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNK 357
R + + NG +LN+G + L L I L + N L
Sbjct: 27 RAAVVQKMRACLNNGN---AVLNVGESGLTTLPDCLPA--------HITTLVIPDNNLTS 75
Query: 358 LNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL-ESTGLEDTLDNLNVRDNQITTLS 416
L + +L++L+++GN L +L L + + L
Sbjct: 76 LPAL---------------PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP 120
Query: 417 SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEV 476
S L KL + N L L P L L++S N L+SLP +L
Sbjct: 121 SG------LCKLWIFGNQLTSL-PVLPPG---LQELSVSDN-QLASLPAL----PSELCK 165
Query: 477 LDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR 536
L L S+P L+ L ++ N L +P L L NN + +L
Sbjct: 166 LWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLP 217
Query: 537 VGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIH 596
+K L +S N+LT+ S L+EL ++ N LT L P +
Sbjct: 218 AL----PSGLKELIVSGNRLTSLP---------VLPSELKELMVSGNRLTSL-PMLPS-- 261
Query: 597 SKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNN 656
L +L + N+ P+ ++ LS ++L N L + +
Sbjct: 262 -GLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALREITSA--PGYSGPI 317
Query: 657 IDAISETCFFNSSQLQIINLSFNRLEKLPERL 688
I + + + L E
Sbjct: 318 IRFDMAGASAPRETRALHLAAADWLVPAREGE 349
Score = 131 bits (330), Expect = 5e-32
Identities = 74/392 (18%), Positives = 133/392 (33%), Gaps = 68/392 (17%)
Query: 241 CDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGN 300
+ L + + T++P P + L + N + +L + + L + + GN
Sbjct: 39 NNGNAVLNVGESGLTTLPD---CLPAHITTLVIPDNNLTSL--PALPPE--LRTLEVSGN 91
Query: 301 RLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNS 360
+LT++ GL ++ I + L L + + L + N+L L
Sbjct: 92 QLTSL-PVLPPGLLELSIFSNPLTHLPAL------------PSGLCKLWIFGNQLTSLPV 138
Query: 361 DTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL 420
L+ L ++ N L +L L L L +NQ+T+L
Sbjct: 139 ---------------LPPGLQELSVSDNQLASL--PALPSELCKLWAYNNQLTSLPMLPS 181
Query: 421 NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLA 480
L +L +S N L L PT + L L N L+SLP L+ L ++
Sbjct: 182 G---LQELSVSDNQLASL-PTLPSE---LYKLWAYNN-RLTSLPAL----PSGLKELIVS 229
Query: 481 ATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSL 540
L S+P LK L ++ N LT +P L L + N + L SL
Sbjct: 230 GNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPE-SL 280
Query: 541 YGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLK 600
L S ++L N L+ + + + + + + + +
Sbjct: 281 IHLSSETTVNLEGNPLSER--------TLQALREITSAPGYSGPIIRFDMAGASAPRETR 332
Query: 601 TLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
L LA ++ + + +
Sbjct: 333 ALHLAAA--DWLVPAREGEPAPADRWHMFGQE 362
Score = 116 bits (293), Expect = 2e-27
Identities = 73/419 (17%), Positives = 134/419 (31%), Gaps = 100/419 (23%)
Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
L+ + L L D L + ++ L +
Sbjct: 43 AVLNVGESGLTTLPDCLPA---------------------------------HITTLVIP 69
Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSF 286
DN + ++ L L + N+ TS+P G L I S + L
Sbjct: 70 DNNLTSLPALP----PELRTLEVSGNQLTSLPV-LPPGLLELSIFSNPLTHLPAL----- 119
Query: 287 LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIH 346
S L ++ + GN+LT++ + L++ N+L L +++
Sbjct: 120 PSG--LCKLWIFGNQLTSLP----VLPPGLQELSVSDNQLASLP---------ALPSELC 164
Query: 347 ILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL-ESTGLEDTLDNL 405
L N+L L L+ L ++ N L +L L L
Sbjct: 165 KLWAYNNQLTSLPM---------------LPSGLQELSVSDNQLASLPTLPS---ELYKL 206
Query: 406 NVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPV 465
+N++T+L + L +L +S N L L P + L L +S N L+SLP+
Sbjct: 207 WAYNNRLTSLPALPSG---LKELIVSGNRLTSL-PVLPSE---LKELMVSGN-RLTSLPM 258
Query: 466 GGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYL 525
L L + L +P+ L + + L N L+E + +T
Sbjct: 259 L----PSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSERTLQALR---EITSA 310
Query: 526 DLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNE 584
+ I+ + + L L+ D+ + + + ++ E
Sbjct: 311 PGYSGPIIRFDMAGASAPRETRALHLAAA-------DWLVPAREGEPAPADRWHMFGQE 362
Score = 100 bits (251), Expect = 3e-22
Identities = 43/194 (22%), Positives = 75/194 (38%), Gaps = 32/194 (16%)
Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
L + + LT +P+ + ++T L + +NN+ +L P ++ L++S N+L
Sbjct: 41 GNAVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSLPA----LPPELRTLEVSGNQL 93
Query: 557 TTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKEL 616
T+ P L + L L L L + N+ P
Sbjct: 94 TSL------PVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLTSLPVL- 139
Query: 617 ILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINL 676
LQE+ +S+NQL ++ L KL NN + ++ S LQ +++
Sbjct: 140 ---PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLPMLP----SGLQELSV 188
Query: 677 SFNRLEKLPERLFN 690
S N+L LP
Sbjct: 189 SDNQLASLPTLPSE 202
Score = 98.0 bits (244), Expect = 2e-21
Identities = 68/315 (21%), Positives = 119/315 (37%), Gaps = 58/315 (18%)
Query: 154 LPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSE 213
LP + + I L N L L L+ L ++ N SL
Sbjct: 55 LPDCLPAH----ITTLVIPDNNLTSLPALPPE-----LRTLEVSGNQL-TSLPV-----L 99
Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
GL+ L I + A+ L +L + N+ TS+P P L+ LS+
Sbjct: 100 PPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSLP----VLPPGLQELSV 148
Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDT 333
+ N++ +L + S+ L ++ N+LT++ + + L++ N+L L
Sbjct: 149 SDNQLASL--PALPSE--LCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASL---- 196
Query: 334 FQGGAFNGLAKIHILNLGYNRLNKLNSD-------TFQGTHITIFSFFQDFQKLKSLDLN 386
++++ L NRL L + G +T S +LK L ++
Sbjct: 197 -----PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT--SLPVLPSELKELMVS 249
Query: 387 GNFLINL--ESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFT 444
GN L +L +GL +L+V NQ+T L S ++ T ++L N L E A
Sbjct: 250 GNRLTSLPMLPSGLL----SLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305
Query: 445 NVPTLLHLNLSRNAH 459
+ + +
Sbjct: 306 EITSAPGYSGPIIRF 320
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 133 bits (338), Expect = 2e-35
Identities = 66/183 (36%), Positives = 90/183 (49%), Gaps = 6/183 (3%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
KLDL N L L AF + L L L+ N L +LP G F LK LE L + L
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
+++P FD+L+NL L L N L +P +F +L LTYL L N + +L G L
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 545 SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKL 604
S+K L L N+L F+ + L+ L L+NN+L + +F KLK L+L
Sbjct: 158 SLKELRLYNNQLKRVPEGAFD-----KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
Query: 605 AFN 607
N
Sbjct: 213 QEN 215
Score = 118 bits (298), Expect = 6e-30
Identities = 65/213 (30%), Positives = 93/213 (43%), Gaps = 31/213 (14%)
Query: 444 TNVPT-LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLC 502
+N+P L+L N LSSLP F L KL +L L L+++P F EL NL+ L
Sbjct: 33 SNIPADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91
Query: 503 LAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGD 562
+ N L +P +F L+NL L L N + +L F+ LT
Sbjct: 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV-------------FDSLT----- 133
Query: 563 YFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSY 622
L L+L NEL L F + LK L+L N+ P+ L+
Sbjct: 134 -----------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182
Query: 623 LQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
L+ + L NNQLK + + + L +L+ L L N
Sbjct: 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 114 bits (287), Expect = 2e-28
Identities = 65/255 (25%), Positives = 93/255 (36%), Gaps = 65/255 (25%)
Query: 252 NRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFN 311
+ T+IPS N P + L + N++ +L + +F L + L N+L T+ G F
Sbjct: 26 KKLTAIPS---NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK 82
Query: 312 GLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIF 371
L + L + N+L L G F+ L + L L N+L L F
Sbjct: 83 ELKNLETLWVTDNKLQALPI-----GVFDQLVNLAELRLDRNQLKSLPPRVF-------- 129
Query: 372 SFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLS 431
D+L L T L L
Sbjct: 130 ----------------------------DSLTKL--------------------TYLSLG 141
Query: 432 HNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQ 491
+N L+ L F + +L L L N L +P G FD L +L+ L L LK +P+
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200
Query: 492 FDELLNLKYLCLAHN 506
FD L LK L L N
Sbjct: 201 FDSLEKLKMLQLQEN 215
Score = 106 bits (266), Expect = 1e-25
Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 21/199 (10%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
++L L N SL FH L LR+L L+DN+++ + GI K NL L +
Sbjct: 38 DTKKLDLQSNKL-SSLPS----KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
N+ ++P + L L + N++ +L F S L + L N L ++ G
Sbjct: 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152
Query: 310 FNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHIT 369
F+ L + L L N+L ++ GAF+ L ++ L L N+L ++ F
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPE-----GAFDKLTELKTLKLDNNQLKRVPEGAFDSLE-- 205
Query: 370 IFSFFQDFQKLKSLDLNGN 388
KLK L L N
Sbjct: 206 ---------KLKMLQLQEN 215
Score = 100 bits (251), Expect = 9e-24
Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 32/208 (15%)
Query: 483 GLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
L +IP + K L L N L+ +P F L L L L++N + L G
Sbjct: 27 KLTAIPSNIPA---DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE 83
Query: 543 LPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTL 602
L +++ L ++ NKL F+ +L EL L+ N+L L P F
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFD-----QLVNLAELRLDRNQLKSLPPRVFD-------- 130
Query: 603 KLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE 662
L+ L + L N+L+++ + L L++L L NN + + E
Sbjct: 131 ----------------SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174
Query: 663 TCFFNSSQLQIINLSFNRLEKLPERLFN 690
F ++L+ + L N+L+++PE F+
Sbjct: 175 GAFDKLTELKTLKLDNNQLKRVPEGAFD 202
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 131 bits (331), Expect = 4e-34
Identities = 60/211 (28%), Positives = 87/211 (41%), Gaps = 12/211 (5%)
Query: 374 FQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSH 432
++ + L L L L++ +N + T S + L Y LT+L+L
Sbjct: 6 VSKVASHLEVNCDKRNLTAL-PPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 433 NNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQF 492
L +L+ +P L L+LS N L SLP L L VLD++ L S+P
Sbjct: 65 AELTKLQ--VDGTLPVLGTLDLSHN-QLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 493 DELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS 552
L L+ L L N L +P + L L L+NNN+ L G L GL ++ L L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180
Query: 553 FNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
N L T +F + L L+ N
Sbjct: 181 ENSLYTIPKGFFGSH------LLPFAFLHGN 205
Score = 121 bits (306), Expect = 8e-31
Identities = 59/234 (25%), Positives = 75/234 (32%), Gaps = 45/234 (19%)
Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
LT + IL+L N L + ++ LNL L
Sbjct: 17 CDKRNLTALPPDLP---KDTTILHLSENLLYTFSL-----ATLMPYTRLTQLNLDRAELT 68
Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
KL L +LDL+ NQ+ +L
Sbjct: 69 KL-------------QVDGTLPVLGTLDLS----------------------HNQLQSLP 93
Query: 417 SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEV 476
LT LD+S N L L A + L L L N L +LP G P KLE
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEK 152
Query: 477 LDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
L LA L +P + L NL L L N L IP+ F L + L N
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205
Score = 121 bits (305), Expect = 1e-30
Identities = 61/231 (26%), Positives = 88/231 (38%), Gaps = 37/231 (16%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
+++ NL L P + L+LS N L + + P +L L+L L
Sbjct: 12 HLEVNCDKRNLTALPPDLPKD---TTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAEL 67
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
+ L L L L+HN L +P + + L LT LD+S N + +L +G+L GL
Sbjct: 68 TKLQV--DGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 545 SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKL 604
++ L L N+L T T LE+L+L NN LT L
Sbjct: 125 ELQELYLKGNELKTLPPGLLT-----PTPKLEKLSLANNNLTELPAGLLN---------- 169
Query: 605 AFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
GL L + L N L TI +G L L+ N
Sbjct: 170 --------------GLENLDTLLLQENSLYTIPKGFFG-SHLLPFAFLHGN 205
Score = 112 bits (282), Expect = 1e-27
Identities = 55/239 (23%), Positives = 86/239 (35%), Gaps = 41/239 (17%)
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
P+ + ++ L ++P D + L L+ N L LT
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLT 58
Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
L+L + L+V LP + LDLS N+L + +L L+++ N
Sbjct: 59 QLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLG------QTLPALTVLDVSFN 110
Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGY 643
LT L + GL LQE+ L N+LKT+
Sbjct: 111 RLTSLPLGALR------------------------GLGELQELYLKGNELKTLPPGLLTP 146
Query: 644 LPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT------FLYTN 696
P+L KL+L NNN+ + L + L N L +P+ F + FL+ N
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 102 bits (255), Expect = 4e-24
Identities = 50/247 (20%), Positives = 83/247 (33%), Gaps = 48/247 (19%)
Query: 213 EFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILS 272
E + + ++ + A+ + K + L + N + +L L L+
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 273 MAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSD 332
+ + L+ D L L + L N+L ++ L + +L++ +NRL L
Sbjct: 62 LDRAELTKLQVDGTLPV--LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSL--- 115
Query: 333 TFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLIN 392
GA GL ++ L L N L L T KL+ L L
Sbjct: 116 --PLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----------KLEKLSLA------ 156
Query: 393 LESTGLEDTLDNLNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLL 450
+N +T L + LN L L L L N+L + F + L
Sbjct: 157 ----------------NNNLTELPAGLLN-GLENLDTLLLQENSLYTIPKGFFGS-HLLP 198
Query: 451 HLNLSRN 457
L N
Sbjct: 199 FAFLHGN 205
Score = 100 bits (251), Expect = 1e-23
Identities = 50/220 (22%), Positives = 82/220 (37%), Gaps = 29/220 (13%)
Query: 169 LDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDN 228
++ L L L L L++NL FS + L L+L
Sbjct: 15 VNCDKRNLTALPPDLPK----DTTILHLSENLLYT-----FSLATLMPYTRLTQLNLDRA 65
Query: 229 QIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLS 288
++ ++ + L L + HN+ S+P + AL +L +++NR+ +L +
Sbjct: 66 ELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 289 QRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHIL 348
L+ + L+GN L T+ G K+ L+L N L +L G NGL + L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-----PAGLLNGLENLDTL 177
Query: 349 NLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN 388
L N L + F L L+GN
Sbjct: 178 LLQENSLYTIPKGFF------------GSHLLPFAFLHGN 205
Score = 95.9 bits (239), Expect = 5e-22
Identities = 52/194 (26%), Positives = 72/194 (37%), Gaps = 17/194 (8%)
Query: 162 SDIP--IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
D+P L S N L S L +L L + L
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDR-------AELTKLQVDGTLPV 78
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
L LDLS NQ++++ + + L L + NR TS+P +L G L+ L + N +
Sbjct: 79 LGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
TL LE++ L N LT + G NGL + L L N L T G F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-----TIPKGFF 192
Query: 340 NGLAKIHILNLGYN 353
G + L N
Sbjct: 193 -GSHLLPFAFLHGN 205
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 123 bits (311), Expect = 6e-32
Identities = 49/256 (19%), Positives = 95/256 (37%), Gaps = 37/256 (14%)
Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLS 461
++ V I + S + L L +L+ + AF+N+P + + +S + L
Sbjct: 13 EEDFRVTCKDIQRIPSLPPS---TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69
Query: 462 SLPVGGFDPLKKLEVLDLAAT-GLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM-MFKNL 519
L F L K+ +++ T L I EL LK+L + + L P++ +
Sbjct: 70 QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129
Query: 520 LNLTYLDLSNNN-IVNLRVGSLYGLPSMKR-LDLSFNKLTTFKGDYFNTKSKPNTSSLEE 577
L++++N + ++ V + GL + L L N T+ +G FN + L+
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG------TKLDA 183
Query: 578 LNL-NNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTI 636
+ L N LT + +F + + +D+S + +
Sbjct: 184 VYLNKNKYLTVIDKDAF---GGVYSG--------------------PSLLDVSQTSVTAL 220
Query: 637 DDYDYGYLPRLRKLNL 652
+L L N
Sbjct: 221 PSKGLEHLKELIARNT 236
Score = 122 bits (309), Expect = 8e-32
Identities = 41/292 (14%), Positives = 87/292 (29%), Gaps = 66/292 (22%)
Query: 241 CDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGN 300
C + R+ IPS+ P + + L + + T+ + +F + + RI + +
Sbjct: 10 CHQEEDFRVTCKDIQRIPSL----PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65
Query: 301 -RLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLN 359
L +E +F L+K+ + + R N A L + L + L
Sbjct: 66 VTLQQLESHSFYNLSKVTHIEIRNTR----NLTYIDPDALKELPLLKFLGIFNTGL---- 117
Query: 360 SDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSA 419
+ L++ N +T++ +A
Sbjct: 118 ------KMFPDLTKVYSTDIFFILEITDN---------------------PYMTSIPVNA 150
Query: 420 LNY--KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVL 477
L L +N ++ AF L + L++N +L+ + F +
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYS---- 205
Query: 478 DLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN 529
L ++ +T +P ++L L +
Sbjct: 206 -------------------GPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238
Score = 122 bits (307), Expect = 2e-31
Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 14/210 (6%)
Query: 401 TLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNN-LKELEPTAFTNVPTLLHLNLSRNA 458
+ L + + + T+ S A N ++++ +S + L++LE +F N+ + H+ +
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 459 HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLN-LKYLCLAHN-HLTEIPEMMF 516
+L+ + L L+ L + TGLK P + L + N ++T IP F
Sbjct: 92 NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151
Query: 517 KNLLNLT-YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK-LTTFKGDYFNTKSKPNTSS 574
+ L N T L L NN +++ + G + + L+ NK LT D F S
Sbjct: 152 QGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAF----GGVYSG 206
Query: 575 LEELNLNNNELTYLFPSSFTIHSKLKTLKL 604
L+++ +T L LK L
Sbjct: 207 PSLLDVSQTSVTALPSKGL---EHLKELIA 233
Score = 103 bits (258), Expect = 5e-25
Identities = 49/260 (18%), Positives = 86/260 (33%), Gaps = 48/260 (18%)
Query: 298 RGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYN-RLN 356
+ I L L L + S AF+ L I + + + L
Sbjct: 19 TCKDIQRIPSL----PPSTQTLKLIETHLRTIPS-----HAFSNLPNISRIYVSIDVTLQ 69
Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
+L S +F K+ +++ +T +
Sbjct: 70 QLESHSFYNLS-----------KVTHIEIRNT---------------------RNLTYID 97
Query: 417 SSAL-NYKLLTKLDLSHNNLKEL-EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKK- 473
AL LL L + + LK + T + L ++ N +++S+PV F L
Sbjct: 98 PDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157
Query: 474 LEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN-HLTEIPEMMFKNLLN-LTYLDLSNNN 531
L L G S+ Y F+ L + L N +LT I + F + + + LD+S +
Sbjct: 158 TLTLKLYNNGFTSVQGYAFN-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216
Query: 532 IVNLRVGSLYGLPSMKRLDL 551
+ L L L + +
Sbjct: 217 VTALPSKGLEHLKELIARNT 236
Score = 100 bits (252), Expect = 4e-24
Identities = 39/205 (19%), Positives = 85/205 (41%), Gaps = 15/205 (7%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+ L LR + FS + + + ++ + +L + S S F+ L + +++
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPN-ISRIYVSID---VTLQQLESHS-FYNLSKVTHIEI 87
Query: 226 SDNQ-IKAIEEGILKGCDNLLELRMDHNRFTSIPSVS-LNGPRALRILSMAYN-RIGTLK 282
+ + + I+ LK L L + + P ++ + IL + N + ++
Sbjct: 88 RNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP 147
Query: 283 ADSFLS-QRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR-LNKLNSDTFQGGAFN 340
++F + L N T+++G AFNG K+ + L N+ L ++ D F G ++
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFG-GVYS 205
Query: 341 GLAKIHILNLGYNRLNKLNSDTFQG 365
G +L++ + L S +
Sbjct: 206 GP---SLLDVSQTSVTALPSKGLEH 227
Score = 93.1 bits (232), Expect = 2e-21
Identities = 36/199 (18%), Positives = 74/199 (37%), Gaps = 16/199 (8%)
Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN-K 555
+ + + IP + + L L ++ + + LP++ R+ +S +
Sbjct: 12 QEEDFRVTCKDIQRIPSL----PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67
Query: 556 LTTFKGDYFNTKSKPNTSSLEELNL-NNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPK 614
L + F N S + + + N LTY+ P + LK L + FP
Sbjct: 68 LQQLESHSFY-----NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD 122
Query: 615 ELIL-GLSYLQEIDLS-NNQLKTIDDYDYGYLPR-LRKLNLNNNNIDAISETCFFNSSQL 671
+ ++++ N + +I + L L L NN ++ FN ++L
Sbjct: 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-YAFNGTKL 181
Query: 672 QIINLSFNR-LEKLPERLF 689
+ L+ N+ L + + F
Sbjct: 182 DAVYLNKNKYLTVIDKDAF 200
Score = 65.4 bits (160), Expect = 4e-12
Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 4/122 (3%)
Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFN-KFNYFPKELILGLSYLQEIDLSNN 631
S + L L L + +F+ + + ++ + LS + I++ N
Sbjct: 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 632 Q-LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQ-LQIINLSFN-RLEKLPERL 688
+ L ID LP L+ L + N + + S+ I+ ++ N + +P
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150
Query: 689 FN 690
F
Sbjct: 151 FQ 152
Score = 61.9 bits (151), Expect = 8e-11
Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 6/119 (5%)
Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLS-NN 631
E+ + ++ + PS + +TLKL P L + I +S +
Sbjct: 11 HQEEDFRVTCKDIQRI-PS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66
Query: 632 QLKTIDDYDYGYLPRLRKLNL-NNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
L+ ++ + + L ++ + + N N+ I L+ + + L+ P+
Sbjct: 67 TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125
Score = 37.7 bits (88), Expect = 0.007
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 621 SYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN- 679
++ ++ ++ I P + L L ++ I F N + I +S +
Sbjct: 11 HQEEDFRVTCKDIQRIP----SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66
Query: 680 RLEKLPERLFN 690
L++L F
Sbjct: 67 TLQQLESHSFY 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 124 bits (313), Expect = 1e-31
Identities = 59/323 (18%), Positives = 111/323 (34%), Gaps = 47/323 (14%)
Query: 364 QGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYK 423
Q T I + + + + + + D + L+ +TT+
Sbjct: 5 QPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQ-YLN 63
Query: 424 LLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATG 483
L L+L N + +L P N+ + L LS N L ++ L+ ++ LDL +T
Sbjct: 64 NLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS--AIAGLQSIKTLDLTSTQ 118
Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL 543
+ + L NL+ L L N +T I L NL YL + N + +L L L
Sbjct: 119 ITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT--PLANL 172
Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
+ L NK++ + +L E++L NN+++ + P
Sbjct: 173 SKLTTLKADDNKISDISP-------LASLPNLIEVHLKNNQISDVSP------------- 212
Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISET 663
+ S L + L+N + + L + + I+
Sbjct: 213 -------------LANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIAPA 257
Query: 664 CFFNSSQLQIINLSFNRLEKLPE 686
++ NL++N +
Sbjct: 258 TISDNGTYASPNLTWNLTSFINN 280
Score = 117 bits (295), Expect = 3e-29
Identities = 60/289 (20%), Positives = 111/289 (38%), Gaps = 21/289 (7%)
Query: 355 LNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITT 414
L +++T D + +L G + +E + L L ++DNQIT
Sbjct: 18 LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD 77
Query: 415 LSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKL 474
L+ N +T+L+LS N LK + + ++ L+L+ ++ + L L
Sbjct: 78 LAPLK-NLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTST-QITDVT--PLAGLSNL 131
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
+VL L + +I L NL+YL + + ++++ NL LT L +N I +
Sbjct: 132 QVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187
Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFT 594
+ L LP++ + L N+++ NTS+L + L N +T
Sbjct: 188 IS--PLASLPNLIEVHLKNNQISDVSPLA-------NTSNLFIVTLTNQTITNQPVFYNN 238
Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGY 643
+K I +L+ N I++ Y +
Sbjct: 239 NLVVPNVVKG--PSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTF 285
Score = 112 bits (282), Expect = 2e-27
Identities = 60/268 (22%), Positives = 111/268 (41%), Gaps = 26/268 (9%)
Query: 430 LSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQ 489
+ + P + + + ++ +++ L + L TG+ +I
Sbjct: 4 TQPTAINVIFP--DPALANAIKIAAGKS-NVTDTV--TQADLDGITTLSAFGTGVTTIEG 58
Query: 490 YQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRL 549
L NL L L N +T++ KNL +T L+LS N + N+ ++ GL S+K L
Sbjct: 59 --VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTL 112
Query: 550 DLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKF 609
DL+ ++T S+L+ L L+ N++T + S + L+ L + +
Sbjct: 113 DLTSTQITDVTPL-------AGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQV 163
Query: 610 NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSS 669
+ + LS L + +N++ I LP L +++L NN I +S N+S
Sbjct: 164 SDL--TPLANLSKLTTLKADDNKISDISPLAS--LPNLIEVHLKNNQISDVSP--LANTS 217
Query: 670 QLQIINLSFNRLEKLPERLFNTFLYTNY 697
L I+ L+ + P N + N
Sbjct: 218 NLFIVTLTNQTITNQPVFYNNNLVVPNV 245
Score = 103 bits (260), Expect = 1e-24
Identities = 44/261 (16%), Positives = 95/261 (36%), Gaps = 25/261 (9%)
Query: 206 NPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP 265
+ + T L + L + IE ++ +NL+ L + N+ T + L
Sbjct: 29 SNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP--LKNL 84
Query: 266 RALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR 325
+ L ++ N + + A + L ++ + L ++T + GL+ + +L L N+
Sbjct: 85 TKITELELSGNPLKNVSAIAGLQS--IKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQ 140
Query: 326 LNKLNSDTFQGGAFNGLAKIHILNLGYNR---------LNKLNSDTFQGTHITIFSFFQD 376
+ ++ GL + L++G + L+KL + I+ S
Sbjct: 141 ITNIS-------PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS 193
Query: 377 FQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLK 436
L + L N + ++ L + + + IT N L+ + +
Sbjct: 194 LPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNN-NLVVPNVVKGPSGA 252
Query: 437 ELEPTAFTNVPTLLHLNLSRN 457
+ P ++ T NL+ N
Sbjct: 253 PIAPATISDNGTYASPNLTWN 273
Score = 100 bits (250), Expect = 3e-23
Identities = 50/305 (16%), Positives = 101/305 (33%), Gaps = 30/305 (9%)
Query: 206 NPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP 265
I L N + + + D + L T+I +
Sbjct: 7 TAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIE--GVQYL 62
Query: 266 RALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR 325
L L + N+I L L++ + + L GN L + GL I L+L +
Sbjct: 63 NNLIGLELKDNQITDLAPLKNLTK--ITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQ 118
Query: 326 LNKLNSDTFQGGAFNGLAKIHILNLGYNR---------LNKLNSDTFQGTHITIFSFFQD 376
+ + GL+ + +L L N+ L L + ++ + +
Sbjct: 119 ITDVT-------PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLAN 171
Query: 377 FQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLK 436
KL +L + N + ++ L +++++NQI+ +S A N L + L++ +
Sbjct: 172 LSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLA-NTSNLFIVTLTNQTIT 230
Query: 437 ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQ--YQFDE 494
N L+ N+ + + + +L I Y F++
Sbjct: 231 NQPVFYNNN---LVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQ 287
Query: 495 LLNLK 499
+ K
Sbjct: 288 SVTFK 292
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 124 bits (313), Expect = 2e-31
Identities = 60/315 (19%), Positives = 102/315 (32%), Gaps = 33/315 (10%)
Query: 380 LKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKEL- 438
++L G+ + L D + N + LK
Sbjct: 14 RENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72
Query: 439 EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNL 498
+ P + L L L P F L L+ + + A GL +P + L
Sbjct: 73 DLLEDATQPGRVALELRSV-PLPQFPDQAFR-LSHLQHMTIDAAGLMELPD-TMQQFAGL 129
Query: 499 KYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558
+ L LA N L +P +L L L + L LP
Sbjct: 130 ETLTLARNPLRALPAS-IASLNRLRELSIRACP-------ELTELPE------PLASTD- 174
Query: 559 FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL 618
+ +L+ L L + L P+S LK+LK+ + + I
Sbjct: 175 ------ASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALGPA-IH 226
Query: 619 GLSYLQEIDLS-NNQLKTIDDYDYGYLPRLRKLNL-NNNNIDAISETCFFNSSQLQIINL 676
L L+E+DL L+ +G L++L L + +N+ + +QL+ ++L
Sbjct: 227 HLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDL 284
Query: 677 SFN-RLEKLPERLFN 690
L +LP +
Sbjct: 285 RGCVNLSRLPSLIAQ 299
Score = 111 bits (281), Expect = 4e-27
Identities = 58/306 (18%), Positives = 99/306 (32%), Gaps = 37/306 (12%)
Query: 372 SFFQDFQKLKSL-DLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSS--ALNYKLLTKL 428
+ + + + + N + + + + L
Sbjct: 27 PYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVAL 86
Query: 429 DLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP 488
+L L + P + L H+ + L LP LE L LA L+++P
Sbjct: 87 ELRSVPLPQF-PDQAFRLSHLQHMTIDAA-GLMELP-DTMQQFAGLETLTLARNPLRALP 143
Query: 489 QYQFDELLNLKYLCLAH-NHLTEIPE--------MMFKNLLNLTYLDLSNNNIVNLRVGS 539
L L+ L + LTE+PE + L+NL L L I +L S
Sbjct: 144 A-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PAS 201
Query: 540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT----SSLEELNL-NNNELTYLFPSSFT 594
+ L ++K L + + L+ LEEL+L L P F
Sbjct: 202 IANLQNLKSLKIRNSPLSAL----------GPAIHHLPKLEELDLRGCTALRNY-PPIFG 250
Query: 595 IHSKLKTLKLA-FNKFNYFPKELILGLSYLQEIDLSNN-QLKTIDDYDYGYLPRLRKLNL 652
+ LK L L + P + I L+ L+++DL L + LP + +
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILV 308
Query: 653 NNNNID 658
+
Sbjct: 309 PPHLQA 314
Score = 108 bits (272), Expect = 5e-26
Identities = 55/255 (21%), Positives = 93/255 (36%), Gaps = 33/255 (12%)
Query: 379 KLKSLDLNGNFLINL-ESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKE 437
+L+L L + L ++ + + L + + L L L+ N L+
Sbjct: 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRA 141
Query: 438 LEPTAFTNVPTLLHLNLSRNAHLSSLP--------VGGFDPLKKLEVLDLAATGLKSIPQ 489
L P + ++ L L++ L+ LP G L L+ L L TG++S+P
Sbjct: 142 L-PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA 200
Query: 490 YQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRV--GSLYGLPSMK 547
L NLK L + ++ L+ + + +L L LDL LR G +K
Sbjct: 201 -SIANLQNLKSLKIRNSPLSALGPAI-HHLPKLEELDLRGCT--ALRNYPPIFGGRAPLK 256
Query: 548 RLDLS-FNKLTTFKGDYFNTKSKPNT----SSLEELNL-NNNELTYLFPSSFTIHSKLKT 601
RL L + L T P + LE+L+L L+ L PS
Sbjct: 257 RLILKDCSNLLTL----------PLDIHRLTQLEKLDLRGCVNLSRL-PSLIAQLPANCI 305
Query: 602 LKLAFNKFNYFPKEL 616
+ + + +
Sbjct: 306 ILVPPHLQAQLDQHR 320
Score = 93.9 bits (234), Expect = 5e-21
Identities = 59/355 (16%), Positives = 104/355 (29%), Gaps = 49/355 (13%)
Query: 210 STSEFHGLVNLRILDLSD-NQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRAL 268
S H L ++ + + N
Sbjct: 4 SHHHHHHSSGRENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQAN----S 55
Query: 269 RILSMAYNRIGTLKAD----SFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
+ LKA +Q + LR L AF L+ + + +
Sbjct: 56 NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAA 114
Query: 325 RLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLD 384
L +L Q A + L L N L L + +L+ L
Sbjct: 115 GLMELPDTMQQ------FAGLETLTLARNPLRALPAS------------IASLNRLRELS 156
Query: 385 LNGNFLI--------NLESTGLEDTLDNL---NVRDNQITTLSSSALNYKLLTKLDLSHN 433
+ + + +++G L NL + I +L +S N + L L + ++
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS 216
Query: 434 NLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLA-ATGLKSIPQYQF 492
L L A ++P L L+L L + P F L+ L L + L ++P
Sbjct: 217 PLSAL-GPAIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPL-DI 273
Query: 493 DELLNLKYLCLAHNH-LTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM 546
L L+ L L L+ +P + L + + + L P+
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILVPPHLQAQLDQHRPVARPAE 327
Score = 88.8 bits (221), Expect = 2e-19
Identities = 41/236 (17%), Positives = 76/236 (32%), Gaps = 35/236 (14%)
Query: 471 LKKLEVLDLA-ATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN 529
E L +T L+ D L + A + N N +
Sbjct: 11 SSGRENLYFQGSTALRPYH----DVLSQWQRHYNADRNRWHSAWR-QANSNNPQIETRTG 65
Query: 530 NNIVNL--RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT----SSLEELNLNNN 583
+ + P L+L L F P+ S L+ + ++
Sbjct: 66 RALKATADLLEDAT-QPGRVALELRSVPLPQF----------PDQAFRLSHLQHMTIDAA 114
Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLS-NNQLKTIDD---- 638
L L P + + L+TL LA N P I L+ L+E+ + +L + +
Sbjct: 115 GLMEL-PDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPLAS 172
Query: 639 ----YDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
++ L L+ L L I ++ + N L+ + + + L L + +
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGPAIHH 227
Score = 75.4 bits (186), Expect = 7e-15
Identities = 52/333 (15%), Positives = 95/333 (28%), Gaps = 83/333 (24%)
Query: 169 LDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDN 228
+G AL+ +D L + L L L + L +L+ + +
Sbjct: 61 ETRTGRALKATADLLEDATQPGRVALELRSV----PLPQF--PDQAFRLSHLQHMTIDAA 114
Query: 229 QIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLS 288
+ + + + + L L + N ++P+ I +L
Sbjct: 115 GLMELPDTMQQ-FAGLETLTLARNPLRALPAS-----------------IASLNR----- 151
Query: 289 QRWLERIILRG-NRLTTI--------EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
L + +R LT + G GL + L L + + L +
Sbjct: 152 ---LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS------I 202
Query: 340 NGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLE 399
L + L + + L+ L KL+ LDL G
Sbjct: 203 ANLQNLKSLKIRNSPLSALGPA------------IHHLPKLEELDLRGC----------- 239
Query: 400 DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSH-NNLKELEPTAFTNVPTLLHLNLSRNA 458
+ L +L L +NL L P + L L+L
Sbjct: 240 ----------TALRNYPPIFGGRAPLKRLILKDCSNLLTL-PLDIHRLTQLEKLDLRGCV 288
Query: 459 HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQ 491
+LS LP L ++ + + Q++
Sbjct: 289 NLSRLPS-LIAQLPANCIILVPPHLQAQLDQHR 320
Score = 68.4 bits (168), Expect = 1e-12
Identities = 29/189 (15%), Positives = 57/189 (30%), Gaps = 16/189 (8%)
Query: 518 NLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEE 577
+ L + + L D + + N+++ +
Sbjct: 10 HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAW---------RQANSNNPQI 60
Query: 578 LNLNNNELTYLFPSSFTI--HSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKT 635
L L+L FP + LS+LQ + + L
Sbjct: 61 ETRTGRALKAT-ADLLEDATQPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLME 118
Query: 636 IDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLS-FNRLEKLPERLFNTFLY 694
+ D L L L N + A+ + + ++L+ +++ L +LPE L +T
Sbjct: 119 LPD-TMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 695 TNYDMAPNL 703
+ NL
Sbjct: 177 GEHQGLVNL 185
Score = 42.6 bits (101), Expect = 3e-04
Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 19/199 (9%)
Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNL----FGDSLNPIFSTSEFHGLVNLRI 222
L + N LR L + S +R L+EL + + L ++ E GLVNL+
Sbjct: 130 ETLTLARNPLRALPASIASLNR--LRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAY-NRIGTL 281
L L I+++ I NL L++ ++ +++ +++ L L + +
Sbjct: 188 LRLEWTGIRSLPASIAN-LQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNY 245
Query: 282 KADSFLSQRWLERIILRG-NRLTTIEGGAFNGLAKIHILNLGYN-RLNKLNSDTFQGGAF 339
F + L+R+IL+ + L T+ + L ++ L+L L++L S
Sbjct: 246 -PPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPS------LI 297
Query: 340 NGLAKIHILNLGYNRLNKL 358
L I+ + + +L
Sbjct: 298 AQLPANCIILVPPHLQAQL 316
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 129 bits (324), Expect = 2e-31
Identities = 45/280 (16%), Positives = 95/280 (33%), Gaps = 23/280 (8%)
Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLS 461
+ I + + K +L ++ + + ++ + + + +
Sbjct: 1 MGETITVSTPIKQIFPDD-AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS-DIK 56
Query: 462 SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN 521
S+ G L + L L L I L NL +L L N + ++ K+L
Sbjct: 57 SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKK 110
Query: 522 LTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLN 581
L L L +N I ++ L LP ++ L L NK+T + L+ L+L
Sbjct: 111 LKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDITV-------LSRLTKLDTLSLE 161
Query: 582 NNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDY 641
+N+++ + +KL+ L L+ N + + GL L ++L + +
Sbjct: 162 DNQISDI--VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQ 217
Query: 642 GYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRL 681
L + + ++ + +
Sbjct: 218 SNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEF 257
Score = 127 bits (320), Expect = 7e-31
Identities = 56/292 (19%), Positives = 108/292 (36%), Gaps = 21/292 (7%)
Query: 364 QGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYK 423
T I F + +L + + + +++D + ++ I ++
Sbjct: 7 VSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQ-YLP 65
Query: 424 LLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATG 483
+TKL L+ N L +++P TN+ L L L N + L LKKL+ L L G
Sbjct: 66 NVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS--SLKDLKKLKSLSLEHNG 120
Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL 543
+ I L L+ L L +N +T+I L L L L +N I ++ L GL
Sbjct: 121 ISDIN--GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIV--PLAGL 174
Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
++ L LS N ++ + L+ L L + E + + T+K
Sbjct: 175 TKLQNLYLSKNHISDLRALAGLKN-------LDVLELFSQECLNKPINHQSNLVVPNTVK 227
Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
+ E+I ++ ++ + + ++ + + +
Sbjct: 228 NTDG--SLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277
Score = 106 bits (265), Expect = 4e-24
Identities = 42/264 (15%), Positives = 86/264 (32%), Gaps = 36/264 (13%)
Query: 191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMD 250
+ E PI +L + +++ ++ +
Sbjct: 1 MGETITVST-------PIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIAN 51
Query: 251 HNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAF 310
++ S+ + + L + N++ +K + L L + L N++ +
Sbjct: 52 NSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKPLTNLKN--LGWLFLDENKIKDLSS--L 105
Query: 311 NGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITI 370
L K+ L+L +N ++ +N L ++ L LG N+ IT
Sbjct: 106 KDLKKLKSLSLEHNGISDIN-------GLVHLPQLESLYLGNNK-------------ITD 145
Query: 371 FSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDL 430
+ KL +L L N + ++ L NL + N I+ L + A K L L+L
Sbjct: 146 ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA-GLKNLDVLEL 204
Query: 431 SHNNLKELEPTAFTNVPTLLHLNL 454
+N+ +
Sbjct: 205 FSQECLNKPINHQSNLVVPNTVKN 228
Score = 104 bits (259), Expect = 2e-23
Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 19/195 (9%)
Query: 492 FDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDL 551
D L +T+ L ++ + +N++I +++ + LP++ +L L
Sbjct: 17 DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFL 72
Query: 552 SFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNY 611
+ NKLT K L L L+ N++ L SS KLK+L L N +
Sbjct: 73 NGNKLTDIKPLTNLKN-------LGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISD 123
Query: 612 FPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQL 671
++ L L+ + L NN++ I L +L L+L +N I I ++L
Sbjct: 124 I--NGLVHLPQLESLYLGNNKITDITVLSR--LTKLDTLSLEDNQISDIVP--LAGLTKL 177
Query: 672 QIINLSFNRLEKLPE 686
Q + LS N + L
Sbjct: 178 QNLYLSKNHISDLRA 192
Score = 104 bits (259), Expect = 2e-23
Identities = 55/342 (16%), Positives = 110/342 (32%), Gaps = 36/342 (10%)
Query: 276 NRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQ 335
I + D ++ + L+ +T N L I + + + +
Sbjct: 9 TPIKQIFPDDAFAE--TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ----- 59
Query: 336 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES 395
L + L L N+ +T + + L L L+ N + +L
Sbjct: 60 --GIQYLPNVTKLFLNGNK-------------LTDIKPLTNLKNLGWLFLDENKIKDLS- 103
Query: 396 TGLED--TLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLN 453
L+D L +L++ N I+ ++ + L L L +N + ++ + + L L+
Sbjct: 104 -SLKDLKKLKSLSLEHNGISDINGLV-HLPQLESLYLGNNKITDITV--LSRLTKLDTLS 159
Query: 454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE 513
L N +S + L KL+ L L+ + + L NL L L P
Sbjct: 160 LEDN-QISDIV--PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPI 214
Query: 514 MMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTS 573
NL+ + ++ ++V + S G + + T F +
Sbjct: 215 NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKA 274
Query: 574 SLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKE 615
L ++ S+ + + K+ PK
Sbjct: 275 KARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKP 316
Score = 91.3 bits (226), Expect = 3e-19
Identities = 51/286 (17%), Positives = 103/286 (36%), Gaps = 41/286 (14%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+ + ++D + +++ ++ ++ I S L N+ L L
Sbjct: 23 TIKDNLKKK---SVTDAVTQNELNSIDQIIANNSD-------IKSVQGIQYLPNVTKLFL 72
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
+ N++ I+ L NL L +D N+ + SL + L+ LS+ +N I +
Sbjct: 73 NGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDINGLV 128
Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
L Q LE + L N++T I + L K+ L+L N+++ + GL K+
Sbjct: 129 HLPQ--LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP-------LAGLTKL 177
Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED--TLD 403
L L N HI+ + L L+L +N + +
Sbjct: 178 QNLYLSKN-------------HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224
Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTL 449
+ D + T + + K ++ + + +F +
Sbjct: 225 TVKNTDGSLVTPEIIS-DDGDYEKPNVKWHLPEFTNEVSFIFYQPV 269
Score = 69.8 bits (170), Expect = 1e-12
Identities = 49/286 (17%), Positives = 87/286 (30%), Gaps = 40/286 (13%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+ +L +GN L + + L L L +N I S L L+ L L
Sbjct: 67 VTKLFLNGNKLTDIKPLTNLKN---LGWLFLDEN-------KIKDLSSLKDLKKLKSLSL 116
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
N I I L L L + +N+ T I L+ L LS+ N+I + +
Sbjct: 117 EHNGISDING--LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA 172
Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
L++ L+ + L N ++ + GL + +L L N + +
Sbjct: 173 GLTK--LQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP--------INHQSNL 220
Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNL 405
+ N N L + I S D++ N +L E +
Sbjct: 221 VVPNTVKNTDGSLVT-------PEIISDDGDYE-------KPNVKWHLPEFTNEVSFIFY 266
Query: 406 NVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLH 451
+ L ++ ++ T +
Sbjct: 267 QPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRIT 312
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 124 bits (313), Expect = 3e-31
Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 6/164 (3%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLLHLN 453
L L++ N ++ L + +L L L LSHN+L + AF VP L +L+
Sbjct: 35 QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94
Query: 454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE 513
LS N HL +L F L+ LEVL L + + + F+++ L+ L L+ N ++ P
Sbjct: 95 LSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153
Query: 514 MMFKN---LLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
+ K+ L L LDLS+N + L + L LP+ + L +
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197
Score = 122 bits (308), Expect = 1e-30
Identities = 62/273 (22%), Positives = 93/273 (34%), Gaps = 51/273 (18%)
Query: 425 LTKLDLSHNNLKELEP-TAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATG 483
LDLSHNNL L T + L L LS N HL+ + F P+ L LDL+
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS--- 96
Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL 543
NHL + E +F +L L L L NN+IV + + +
Sbjct: 97 ---------------------SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135
Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
+++L LS N+++ F + K L L+L++N+L L +
Sbjct: 136 AQLQKLYLSQNQISRFPVELI--KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193
Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISET 663
L L NN L D Y + L++
Sbjct: 194 L----------------------YLHNNPL-ECDCKLYQLFSHWQYRQLSSVMDFQEDLY 230
Query: 664 CFFNSSQLQIINLSFNRLEKLPERLFNTFLYTN 696
C + I +L F + E + L
Sbjct: 231 CMHSKKLHNIFSLDFFNCSEYKESAWEAHLGDT 263
Score = 109 bits (274), Expect = 4e-26
Identities = 49/264 (18%), Positives = 85/264 (32%), Gaps = 46/264 (17%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
L L+ N +L+ + + L NL L LS N + I NL L +
Sbjct: 40 YTALLDLSHN----NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
N ++ + +AL +L L N + ++ A
Sbjct: 96 SSNHLHTLDEFLFSDLQALEVLL------------------------LYNNHIVVVDRNA 131
Query: 310 FNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHIT 369
F +A++ L L N++++ + + N L K+ +L+L N+L KL Q
Sbjct: 132 FEDMAQLQKLYLSQNQISRFPVELIKD--GNKLPKLMLLDLSSNKLKKLPLTDLQKLP-- 187
Query: 370 IFSFFQDFQKLKSLDLNGN------FLINLESTGLEDTLDNLNVRDNQITTLSSSALNYK 423
L L+ N L L S L ++ + + S L+
Sbjct: 188 -------AWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNI 240
Query: 424 L-LTKLDLSHNNLKELEPTAFTNV 446
L + S E +
Sbjct: 241 FSLDFFNCSEYKESAWEAHLGDTL 264
Score = 99.1 bits (247), Expect = 1e-22
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 7/150 (4%)
Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
LDLS N L+ + ++ T ++L L L++N L ++ +F L+ L
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPT----RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94
Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISET 663
L+ N + + L L L+ + L NN + +D + + +L+KL L+ N I
Sbjct: 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154
Query: 664 CFFNSS---QLQIINLSFNRLEKLPERLFN 690
+ + +L +++LS N+L+KLP
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 125 bits (315), Expect = 2e-30
Identities = 58/284 (20%), Positives = 97/284 (34%), Gaps = 38/284 (13%)
Query: 428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
+ +N + F+ L ++ + + + L L L S+
Sbjct: 15 QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSL 74
Query: 488 PQYQFDELL-NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM 546
P D L + L + N L +PE+ +L YLD +N + L S+
Sbjct: 75 P----DNLPPQITVLEITQNALISLPEL----PASLEYLDACDNRLSTLPEL----PASL 122
Query: 547 KRLDLSFNKLTTFKGDYFNTKSKPNT-SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLA 605
K LD+ N+LT P + LE +N +NN+LT L P T L+ L +
Sbjct: 123 KHLDVDNNQLTML----------PELPALLEYINADNNQLTML-PELPT---SLEVLSVR 168
Query: 606 FNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRK----LNLNNNNIDAIS 661
N+ + P+ L+ +D+S N L+++ + N I I
Sbjct: 169 NNQLTFLPELP----ESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCRENRITHIP 223
Query: 662 ETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNYDMAPNLVF 705
E + I L N L + P + F
Sbjct: 224 E-NILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266
Score = 119 bits (299), Expect = 3e-28
Identities = 66/347 (19%), Positives = 115/347 (33%), Gaps = 61/347 (17%)
Query: 350 LGYNRLNKLNSDTFQGTHITIF-SFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVR 408
L N L+ ++F T + +F + K + L G S E ++
Sbjct: 5 LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF--- 61
Query: 409 DNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGF 468
++L L+ NL L + L +++N L SLP
Sbjct: 62 -----------------SELQLNRLNLSSLPDNLPPQ---ITVLEITQN-ALISLP---- 96
Query: 469 DPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLS 528
+ LE LD L ++P + +LK+L + +N LT +PE L Y++
Sbjct: 97 ELPASLEYLDACDNRLSTLP----ELPASLKHLDVDNNQLTMLPE----LPALLEYINAD 148
Query: 529 NNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT-SSLEELNLNNNELTY 587
NN + L S++ L + N+LT P SLE L+++ N L
Sbjct: 149 NNQLTML----PELPTSLEVLSVRNNQLTFL----------PELPESLEALDVSTNLLES 194
Query: 588 LFPSSFTIHSKLKT----LKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGY 643
L P+ + + + N+ + P+ IL L I L +N L +
Sbjct: 195 L-PAVPVRNHHSEETEIFFRCRENRITHIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQ 252
Query: 644 LPRLRKLNLNNNNID---AISETCFFNSSQLQIINLSFNRLEKLPER 687
+ T + N+ + +
Sbjct: 253 QTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQI 299
Score = 118 bits (298), Expect = 3e-28
Identities = 58/311 (18%), Positives = 107/311 (34%), Gaps = 49/311 (15%)
Query: 405 LNVRDNQITTLSSSALNY-KLLTKLDLSHNN----LKELEPTAFTNVPTLLHLNLSRNAH 459
N N I+ + + K L N + L+ L L+R +
Sbjct: 15 QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ---FSELQLNRL-N 70
Query: 460 LSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNL 519
LSSLP ++ VL++ L S+P + +L+YL N L+ +PE
Sbjct: 71 LSSLPDNLP---PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE----LP 119
Query: 520 LNLTYLDLSNNNIVNL--RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT-SSLE 576
+L +LD+ NN + L L + ++ N+LT P +SLE
Sbjct: 120 ASLKHLDVDNNQLTMLPELPALL------EYINADNNQLTML----------PELPTSLE 163
Query: 577 ELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE----IDLSNNQ 632
L++ NN+LT+L P L+ L ++ N P + + + +E N+
Sbjct: 164 VLSVRNNQLTFL-PELP---ESLEALDVSTNLLESLP-AVPVRNHHSEETEIFFRCRENR 218
Query: 633 LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTF 692
+ I + + L + L +N + + + + +
Sbjct: 219 ITHIPE-NILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277
Query: 693 LYTNYDMAPNL 703
+
Sbjct: 278 RPLADAVTAWF 288
Score = 98.9 bits (246), Expect = 9e-22
Identities = 56/372 (15%), Positives = 115/372 (30%), Gaps = 53/372 (14%)
Query: 169 LDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDN 228
+ N + FS D ++ L + N S + + L L+
Sbjct: 15 QNSFYNTISGTYADYFS-AWDKWEKQALPGE----NRNEAVSLLKECLINQFSELQLNRL 69
Query: 229 QIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLS 288
+ ++ + + + L + N S+P P +L L NR+ TL + S
Sbjct: 70 NLSSLPDNLPP---QITVLEITQNALISLP----ELPASLEYLDACDNRLSTLP-ELPAS 121
Query: 289 QRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHIL 348
L+ + + N+LT + A + +N N+L L + +L
Sbjct: 122 ---LKHLDVDNNQLTMLP----ELPALLEYINADNNQLTMLPEL---------PTSLEVL 165
Query: 349 NLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL-----ESTGLEDTLD 403
++ N+L L + L++LD++ N L +L + E+T
Sbjct: 166 SVRNNQLTFLPEL---------------PESLEALDVSTNLLESLPAVPVRNHHSEETEI 210
Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
R+N+IT + + L+ + L N L + T + S
Sbjct: 211 FFRCRENRITHIPENILSLDPTCTIILEDNPLSSR-IRESLSQQTAQPDYHGPRIYFSMS 269
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
G + D Q ++ + N + + + + ++
Sbjct: 270 D--GQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRL-SDTVSAR 326
Query: 524 YLDLSNNNIVNL 535
+
Sbjct: 327 NTSGFREQVAAW 338
Score = 79.2 bits (195), Expect = 2e-15
Identities = 48/299 (16%), Positives = 90/299 (30%), Gaps = 44/299 (14%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
L + L L D L + L + N SL + + +L LD
Sbjct: 61 FSELQLNRLNLSSLPDNLPP----QITVLEITQNAL-ISLPELPA--------SLEYLDA 107
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
DN++ + E +L L +D+N+ T +P P L ++ N++ L
Sbjct: 108 CDNRLSTLPELP----ASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTML--PE 157
Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
+ LE + +R N+LT + + L++ N L L + + +
Sbjct: 158 LPTS--LEVLSVRNNQLTFLP----ELPESLEALDVSTNLLESLPAVPVRNH--HSEETE 209
Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED-TLDN 404
NR+ + + ++ L N L + L T
Sbjct: 210 IFFRCRENRITHIPEN------------ILSLDPTCTIILEDNPLSSRIRESLSQQTAQP 257
Query: 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
++S N D E + + + + N + L
Sbjct: 258 DYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFL 316
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 112 bits (281), Expect = 3e-28
Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
T L +T+ + + N I + A YK L ++DLS+N + EL P AF + +L L L
Sbjct: 28 TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM 514
N ++ LP F+ L L++L L A + + F +L NL L L N L I +
Sbjct: 88 YGN-KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146
Query: 515 MFKNLLNLTYLDLSNN 530
F L + + L+ N
Sbjct: 147 TFSPLRAIQTMHLAQN 162
Score = 101 bits (254), Expect = 1e-24
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 30/158 (18%)
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
T++ L N +K + P AF+ L ++LS N +S L F L+
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLR------------- 80
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS 545
+L L L N +TE+P+ +F+ L +L L L+ N I LRV + L +
Sbjct: 81 -----------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129
Query: 546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
+ L L NKL T F+ +++ ++L N
Sbjct: 130 LNLLSLYDNKLQTIAKGTFS-----PLRAIQTMHLAQN 162
Score = 92.0 bits (229), Expect = 2e-21
Identities = 44/176 (25%), Positives = 64/176 (36%), Gaps = 32/176 (18%)
Query: 483 GLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
GL IP + + L N + IP F L +DLSNN I L + G
Sbjct: 22 GLTEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78
Query: 543 LPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTL 602
L S+ L L NK+T F SL+ L LN N++ L +F
Sbjct: 79 LRSLNSLVLYGNKITELPKSLFE-----GLFSLQLLLLNANKINCLRVDAFQ-------- 125
Query: 603 KLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
L L + L +N+L+TI + L ++ ++L N
Sbjct: 126 ----------------DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165
Score = 89.7 bits (223), Expect = 2e-20
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 5/135 (3%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
T+ E+RL N ++ I + F LR +DLS+NQI + +G +L L +
Sbjct: 33 TITEIRLEQN----TIKVIPPGA-FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
N+ T +P G +L++L + N+I L+ D+F L + L N+L TI G
Sbjct: 88 YGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147
Query: 310 FNGLAKIHILNLGYN 324
F+ L I ++L N
Sbjct: 148 FSPLRAIQTMHLAQN 162
Score = 81.6 bits (202), Expect = 9e-18
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 16/143 (11%)
Query: 246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI 305
E+R++ N IP + + + LR + ++ N+I L D+F R L ++L GN++T +
Sbjct: 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95
Query: 306 EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 365
F GL + +L L N++N L + AF L +++L+L N+L + TF
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINCL-----RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150
Query: 366 THITIFSFFQDFQKLKSLDLNGN 388
+ ++++ L N
Sbjct: 151 -----------LRAIQTMHLAQN 162
Score = 81.2 bits (201), Expect = 2e-17
Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 20/155 (12%)
Query: 251 HNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAF 310
T IP+ N P + + + N I + +F + L RI L N+++ + AF
Sbjct: 20 GKGLTEIPT---NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76
Query: 311 NGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITI 370
GL ++ L L N++ +L F GL + +L L N++N L D
Sbjct: 77 QGLRSLNSLVLYGNKITELPK-----SLFEGLFSLQLLLLNANKINCLRVDA-------- 123
Query: 371 FSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNL 405
FQD L L L N L + + G L +
Sbjct: 124 ---FQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAI 154
Score = 79.7 bits (197), Expect = 5e-17
Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
++ E+ L N + + P +F+ + KL+ + L+ N+ + + GL L + L N+
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 633 LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT- 691
+ + + L L+ L LN N I+ + F + L +++L N+L+ + + F+
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 692 ------FLYTN 696
L N
Sbjct: 152 RAIQTMHLAQN 162
Score = 79.3 bits (196), Expect = 6e-17
Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
+ + L N IK I G L + + +N+ + + + G R+L L + N+
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
I L F L+ ++L N++ + AF L +++L+L N+L + G
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-----G 146
Query: 338 AFNGLAKIHILNLGYN 353
F+ L I ++L N
Sbjct: 147 TFSPLRAIQTMHLAQN 162
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 113 bits (286), Expect = 4e-28
Identities = 49/277 (17%), Positives = 103/277 (37%), Gaps = 28/277 (10%)
Query: 410 NQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFD 469
QI + + K +L ++ + + ++ + + + + S+ G
Sbjct: 15 KQIFSDD----AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS-DIKSVQ--GIQ 65
Query: 470 PLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN 529
L + L L L I L NL +L L N + ++ K+L L L L +
Sbjct: 66 YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEH 121
Query: 530 NNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLF 589
N I ++ L LP ++ L L NK+T + L+ L+L +N+++ +
Sbjct: 122 NGISDIN--GLVHLPQLESLYLGNNKITDITV-------LSRLTKLDTLSLEDNQISDI- 171
Query: 590 PSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRK 649
+KL+ L L+ N + + GL L ++L + + L
Sbjct: 172 -VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228
Query: 650 LNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPE 686
+ + ++ ++ + + N+ ++ E E
Sbjct: 229 VKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNE 263
Score = 112 bits (282), Expect = 1e-27
Identities = 59/301 (19%), Positives = 107/301 (35%), Gaps = 33/301 (10%)
Query: 295 IILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNR 354
I + I + A+ NL + + N L I + +
Sbjct: 7 TITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVT-------QNELNSIDQIIANNSD 57
Query: 355 LNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITT 414
+ + Q + L LNGN L +++ L L + +N++
Sbjct: 58 IKSV-------------QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD 104
Query: 415 LSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKL 474
LSS + K L L L HN + ++ ++P L L L N ++ + L KL
Sbjct: 105 LSSLK-DLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNN-KITDIT--VLSRLTKL 158
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
+ L L + I L L+ L L+ NH++++ L NL L+L + +N
Sbjct: 159 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLN 214
Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFT 594
+ L + + L T + + + + L NE++++F T
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYE-KPNVKWHLPEFTNEVSFIFYQPVT 273
Query: 595 I 595
I
Sbjct: 274 I 274
Score = 97.8 bits (244), Expect = 1e-22
Identities = 41/249 (16%), Positives = 84/249 (33%), Gaps = 29/249 (11%)
Query: 206 NPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP 265
PI +L + +++ ++ +++ S+ +
Sbjct: 12 TPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYL 67
Query: 266 RALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR 325
+ L + N++ +K + L L + L N++ + L K+ L+L +N
Sbjct: 68 PNVTKLFLNGNKLTDIKPLANLKN--LGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNG 123
Query: 326 LNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDL 385
++ +N L ++ L LG N+ IT + KL +L L
Sbjct: 124 ISDIN-------GLVHLPQLESLYLGNNK-------------ITDITVLSRLTKLDTLSL 163
Query: 386 NGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTN 445
N + ++ L NL + N I+ L + A K L L+L +N
Sbjct: 164 EDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA-GLKNLDVLELFSQECLNKPINHQSN 222
Query: 446 VPTLLHLNL 454
+ +
Sbjct: 223 LVVPNTVKN 231
Score = 85.9 bits (213), Expect = 1e-18
Identities = 50/281 (17%), Positives = 101/281 (35%), Gaps = 41/281 (14%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+ + ++ + +++ ++ ++ I S L N+ L L
Sbjct: 26 TIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSD-------IKSVQGIQYLPNVTKLFL 75
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
+ N++ I+ L NL L +D N+ + SL + L+ LS+ +N I +
Sbjct: 76 NGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDINGLV 131
Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
L Q LE + L N++T I + L K+ L+L N+++ + GL K+
Sbjct: 132 HLPQ--LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP-------LAGLTKL 180
Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED--TLD 403
L L N HI+ + L L+L +N + +
Sbjct: 181 QNLYLSKN-------------HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227
Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFT 444
+ D + T + + K ++ + + +F
Sbjct: 228 TVKNTDGSLVTPEIIS-DDGDYEKPNVKWHLPEFTNEVSFI 267
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 108 bits (273), Expect = 4e-27
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLLHLN 453
+ L + +N+ T L ++ + KL L K++ S+N + ++E AF + +
Sbjct: 28 EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87
Query: 454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE 513
L+ N L ++ F L+ L+ L L + + + F L +++ L L N +T +
Sbjct: 88 LTSN-RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146
Query: 514 MMFKNLLNLTYLDLSNN 530
F L +L+ L+L N
Sbjct: 147 GAFDTLHSLSTLNLLAN 163
Score = 108 bits (272), Expect = 6e-27
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 426 TKLDLSHNNLKELEPTA-FTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
+L L++N LE T F +P L +N S N ++ + G F+ + + L + L
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRL 93
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
+++ F L +LK L L N +T + F L ++ L L +N I + G+ L
Sbjct: 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153
Query: 545 SMKRLDLSFN 554
S+ L+L N
Sbjct: 154 SLSTLNLLAN 163
Score = 98.2 bits (245), Expect = 2e-23
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 4/135 (2%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
ELRL +N + +T F L LR ++ S+N+I IEEG +G + E+ +
Sbjct: 33 YTAELRLNNN----EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
NR ++ G +L+ L + NRI + DSF+ + + L N++TT+ GA
Sbjct: 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148
Query: 310 FNGLAKIHILNLGYN 324
F+ L + LNL N
Sbjct: 149 FDTLHSLSTLNLLAN 163
Score = 91.6 bits (228), Expect = 4e-21
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 475 EVLDLAATGLKSIP-QYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIV 533
L L + F +L L+ + ++N +T+I E F+ + + L++N +
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 534 NLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSF 593
N++ GL S+K L L N++T D F SS+ L+L +N++T + P +F
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFI-----GLSSVRLLSLYDNQITTVAPGAF 149
Query: 594 TIHSKLKTLKLAFNKFN 610
L TL L N FN
Sbjct: 150 DTLHSLSTLNLLANPFN 166
Score = 88.6 bits (220), Expect = 4e-20
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 30/163 (18%)
Query: 497 NLKYLCLAHNHLTEIPEM-MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK 555
L L +N T + +FK L L ++ SNN I ++ G+ G + + L+ N+
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92
Query: 556 LTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKE 615
L + F SL+ L L +N +T + SF
Sbjct: 93 LENVQHKMFK-----GLESLKTLMLRSNRITCVGNDSFI--------------------- 126
Query: 616 LILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
GLS ++ + L +NQ+ T+ + L L LNL N +
Sbjct: 127 ---GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166
Score = 77.8 bits (192), Expect = 2e-16
Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
Query: 542 GLP-SMKRLDLSFNKLTTFKGD-YFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKL 599
+P L L+ N+ T + F L ++N +NN++T + +F S +
Sbjct: 29 HIPQYTAELRLNNNEFTVLEATGIFK-----KLPQLRKINFSNNKITDIEEGAFEGASGV 83
Query: 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDA 659
+ L N+ ++ GL L+ + L +N++ + + + L +R L+L +N I
Sbjct: 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT 143
Query: 660 ISETCFFNSSQLQIINLSFN 679
++ F L +NL N
Sbjct: 144 VAPGAFDTLHSLSTLNLLAN 163
Score = 76.6 bits (189), Expect = 5e-16
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 218 VNLRILDLSDNQIKAIE-EGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
L L++N+ +E GI K L ++ +N+ T I + G + + + N
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 336
R+ ++ F L+ ++LR NR+T + +F GL+ + +L+L N++ T
Sbjct: 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-----TVAP 146
Query: 337 GAFNGLAKIHILNLGYN 353
GAF+ L + LNL N
Sbjct: 147 GAFDTLHSLSTLNLLAN 163
Score = 76.2 bits (188), Expect = 8e-16
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 573 SSLEELNLNNNELTYLFPS-SFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN 631
EL LNNNE T L + F +L+ + + NK + G S + EI L++N
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 632 QLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT 691
+L+ + + L L+ L L +N I + F S +++++L N++ + F+T
Sbjct: 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151
Query: 692 -------FLYTN 696
L N
Sbjct: 152 LHSLSTLNLLAN 163
Score = 74.7 bits (184), Expect = 2e-15
Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 17/144 (11%)
Query: 246 ELRMDHNRFTSIPSVSL-NGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTT 304
ELR+++N FT + + + LR ++ + N+I ++ +F + I+L NRL
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95
Query: 305 IEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQ 364
++ F GL + L L NR+ + + +F GL+ + +L+L N++ + F
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRITCVGN-----DSFIGLSSVRLLSLYDNQITTVAPGAFD 150
Query: 365 GTHITIFSFFQDFQKLKSLDLNGN 388
L +L+L N
Sbjct: 151 T-----------LHSLSTLNLLAN 163
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 109 bits (274), Expect = 6e-27
Identities = 51/158 (32%), Positives = 70/158 (44%), Gaps = 6/158 (3%)
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
KLDL L L F + L LNL N L +L G FD L +L L LA L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLA 96
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS 545
S+P FD L L L L N L +P +F L L L L+ N + ++ G+ L +
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156
Query: 546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
++ L LS N+L + F+ L+ + L N
Sbjct: 157 LQTLSLSTNQLQSVPHGAFD-----RLGKLQTITLFGN 189
Score = 87.8 bits (218), Expect = 2e-19
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 5/160 (3%)
Query: 499 KYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558
+ L L L + + F+ L LT+L+L N + L G L + L L+ N+L +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 559 FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL 618
F+ + + L++L L N+L L F +KLK L+L N+ P
Sbjct: 98 LPLGVFD-----HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Query: 619 GLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
L+ LQ + LS NQL+++ + L +L+ + L N D
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 81.3 bits (201), Expect = 2e-17
Identities = 56/227 (24%), Positives = 80/227 (35%), Gaps = 65/227 (28%)
Query: 253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNG 312
S+PS P L + + TL +F L + L N+L T+ G F+
Sbjct: 25 SLDSVPS---GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81
Query: 313 LAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFS 372
L ++ L L N+L L G F+ L ++ L LG N+L L S F
Sbjct: 82 LTELGTLGLANNQLASLPL-----GVFDHLTQLDKLYLGGNQLKSLPSGVF--------- 127
Query: 373 FFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSH 432
D L L +L L+
Sbjct: 128 ---------------------------DRLTKL--------------------KELRLNT 140
Query: 433 NNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
N L+ + AF + L L+LS N L S+P G FD L KL+ + L
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITL 186
Score = 79.4 bits (196), Expect = 1e-16
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 9/159 (5%)
Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
+ LDL + + + +G L L +D+N+ ++ + + L L +A N+
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
+ +L F L+++ L GN+L ++ G F+ L K+ L L N+L + + G
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-----G 149
Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQG----THITIFS 372
AF+ L + L+L N+L + F IT+F
Sbjct: 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
Score = 77.8 bits (192), Expect = 4e-16
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 11/166 (6%)
Query: 188 RDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLEL 247
DT ++L L S + F GL L L+L NQ++ + G+ L L
Sbjct: 35 ADT-EKLDLQSTGLAT-----LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88
Query: 248 RMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEG 307
+ +N+ S+P + L L + N++ +L + F L+ + L N+L +I
Sbjct: 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148
Query: 308 GAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYN 353
GAF+ L + L+L N+L + GAF+ L K+ + L N
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQ-----SVPHGAFDRLGKLQTITLFGN 189
Score = 69.7 bits (171), Expect = 2e-13
Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 12/157 (7%)
Query: 547 KRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAF 606
++LDL L T F +K L LNL+ N+L L F ++L TL LA
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTK-----LTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92
Query: 607 NKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFF 666
N+ P + L+ L ++ L NQLK++ + L +L++L LN N + +I F
Sbjct: 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Query: 667 NSSQLQIINLSFNRLEKLPERLFNT-------FLYTN 696
+ LQ ++LS N+L+ +P F+ L+ N
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 106 bits (267), Expect = 1e-25
Identities = 57/276 (20%), Positives = 93/276 (33%), Gaps = 19/276 (6%)
Query: 392 NLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLH 451
L +D + S +L + + L + L
Sbjct: 42 GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA--LRVLGISGLQE 99
Query: 452 LNLSRNAHLSSLPVGGFD-PLKKLEVLDLA----ATGLKSIPQYQFDELLNLKYLCLAHN 506
L L + P + L +L+L AT + + Q LK L +A
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159
Query: 507 HLTEIPEMMFKNLLNLTYLDLSNNNIVN----LRVGSLYGLPSMKRLDLSFNKLTTFKGD 562
H + L+ LDLS+N + + P+++ L L + T G
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219
Query: 563 YFNTKSKPNTSSLEELNLNNNELTYLFP-SSFTIHSKLKTLKLAFNKFNYFPKELILGLS 621
+ L+ L+L++N L S S+L +L L+F PK L +
Sbjct: 220 CSALAAAR--VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL---PA 274
Query: 622 YLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNI 657
L +DLS N+L D LP++ L+L N
Sbjct: 275 KLSVLDLSYNRLDRNPSPD--ELPQVGNLSLKGNPF 308
Score = 91.5 bits (227), Expect = 2e-20
Identities = 46/262 (17%), Positives = 90/262 (34%), Gaps = 25/262 (9%)
Query: 449 LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLN---LKYLCLAH 505
L +L + L+ L + A + S + +L L+ L L +
Sbjct: 45 LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104
Query: 506 NHLT--EIPEMMFKNLLNLTYLDLSNNNIVNLRVG----SLYGLPSMKRLDLSFNKLTTF 559
+T P ++ +L L+L N + + P +K L ++ F
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164
Query: 560 KGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIH----SKLKTLKLAFNKFNYFPKE 615
+ +L L+L++N + L+ L L
Sbjct: 165 SCEQVR-----VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219
Query: 616 ---LILGLSYLQEIDLSNNQLKTI-DDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQL 671
L LQ +DLS+N L+ + +L LNL+ + + + ++L
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKL 276
Query: 672 QIINLSFNRLEKLPERLFNTFL 693
+++LS+NRL++ P +
Sbjct: 277 SVLDLSYNRLDRNPSPDELPQV 298
Score = 88.4 bits (219), Expect = 3e-19
Identities = 50/241 (20%), Positives = 78/241 (32%), Gaps = 21/241 (8%)
Query: 333 TFQGGAFNGLAKIHILN-LGYNRLNKLNSDTFQGTHITIFSFFQ-DFQKLKSLDLNGNFL 390
T + L LG + L +L + + T + L L+L
Sbjct: 74 TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133
Query: 391 INLES------TGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAF 443
++ L+ L L++ S + + L+ LDLS N
Sbjct: 134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193
Query: 444 TNV----PTLLHLNLSRN--AHLSSLPVGGFDPLKKLEVLDLAATGLKSIP-QYQFDELL 496
PTL L L S + +L+ LDL+ L+ D
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253
Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
L L L+ L ++P+ + L + LDLS N + R S LP + L L N
Sbjct: 254 QLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLD--RNPSPDELPQVGNLSLKGNPF 308
Query: 557 T 557
Sbjct: 309 L 309
Score = 87.3 bits (216), Expect = 6e-19
Identities = 44/258 (17%), Positives = 77/258 (29%), Gaps = 26/258 (10%)
Query: 345 IHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED---- 400
I+ + + + + L+ L L + L +
Sbjct: 62 TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121
Query: 401 TLDNLNVRDNQITTLSS-----SALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
L+ LN+R+ T + L L ++ + P L L+LS
Sbjct: 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181
Query: 456 RNAHLS------SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT 509
N L +L F L+ L + + + + L+ L L+HN L
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241
Query: 510 EIP-EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKS 568
+ L L+LS + + G + LDLS+N+L S
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNP-------S 291
Query: 569 KPNTSSLEELNLNNNELT 586
+ L+L N
Sbjct: 292 PDELPQVGNLSLKGNPFL 309
Score = 76.9 bits (189), Expect = 2e-15
Identities = 50/265 (18%), Positives = 90/265 (33%), Gaps = 17/265 (6%)
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
+AD ++ + L+ + + + +L + + L + G A
Sbjct: 53 DTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112
Query: 340 NGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL--ESTG 397
L + +L L ++ T + + LK L + +N E
Sbjct: 113 PPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL--KPGLKVLSIAQAHSLNFSCEQVR 170
Query: 398 LEDTLDNLNVRDNQITT---LSSSALNYKL--LTKLDLSHNNLKELEPTA---FTNVPTL 449
+ L L++ DN L S+ K L L L + ++ L
Sbjct: 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230
Query: 450 LHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT 509
L+LS N+ + D +L L+L+ TGLK +P+ L L L++N L
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA---KLSVLDLSYNRLD 287
Query: 510 EIPEMMFKNLLNLTYLDLSNNNIVN 534
P L + L L N ++
Sbjct: 288 RNPSPDE--LPQVGNLSLKGNPFLD 310
Score = 69.5 bits (170), Expect = 5e-13
Identities = 39/260 (15%), Positives = 79/260 (30%), Gaps = 26/260 (10%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQI--KAIEEGILKGCDNLLEL 247
+L+ L + + +F G+ L+ L L + ++ A + +L L
Sbjct: 69 SLKRLTVRAARIPSRI--LFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNIL 126
Query: 248 RMDHNRFT----SIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLT 303
+ + + + + L++LS+A + L + L N
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186
Query: 304 T----IEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLN 359
I + +L L + + ++ L+L +N L
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA--LAAARVQLQGLDLSHNSL---- 240
Query: 360 SDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSA 419
+L SL+L+ L + GL L L++ N++ S
Sbjct: 241 ------RDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLPAKLSVLDLSYNRLDRNPSP- 292
Query: 420 LNYKLLTKLDLSHNNLKELE 439
+ L L N + E
Sbjct: 293 DELPQVGNLSLKGNPFLDSE 312
Score = 66.5 bits (162), Expect = 6e-12
Identities = 34/239 (14%), Positives = 82/239 (34%), Gaps = 31/239 (12%)
Query: 165 PIRRLDFSGNALRRLSDK-LFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRIL 223
++ L + + L L L L + + + + + L++L
Sbjct: 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVL 154
Query: 224 DLSDNQIKAIEEGILKGCDNLLELRMDHNRFTS----IPSVSLNGPRALRILSMAYNRIG 279
++ ++ L L + N I ++ L++L++ +
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214
Query: 280 TLK---ADSFLSQRWLERIILRGNRLTTI-EGGAFNGLAKIHILNLGYNRLNKLNSDTFQ 335
T + ++ L+ + L N L + + ++++ LNL + L ++
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA 274
Query: 336 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLE 394
K+ +L+L YNRL++ + ++ +L L GN ++ E
Sbjct: 275 --------KLSVLDLSYNRLDRN-------------PSPDELPQVGNLSLKGNPFLDSE 312
Score = 49.5 bits (118), Expect = 2e-06
Identities = 28/171 (16%), Positives = 48/171 (28%), Gaps = 9/171 (5%)
Query: 520 LNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELN 579
N + ++ N + L R K + D + SL+ L
Sbjct: 15 CNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLT 74
Query: 580 LNNNELTYLFPSSFTI---HSKLKTLKLAFNKFNY--FPKELILGLSYLQEIDLSNNQLK 634
+ + S L+ L L + P L L ++L N
Sbjct: 75 VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134
Query: 635 TIDDYDYG----YLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRL 681
T D + P L+ L++ + S L ++LS N
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 105 bits (264), Expect = 2e-25
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 19/185 (10%)
Query: 348 LNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNV 407
NL + + + + + N + + +++ + L +
Sbjct: 24 ANLKKKSVTDAVT-------------QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLAL 70
Query: 408 RDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPV 465
N++ +S+ +L LT L L+ N L+ L F + L L L N L SLP
Sbjct: 71 GGNKLHDISALK---ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPD 126
Query: 466 GGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYL 525
G FD L L L+LA L+S+P+ FD+L NL L L++N L +PE +F L L L
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186
Query: 526 DLSNN 530
L N
Sbjct: 187 RLYQN 191
Score = 104 bits (262), Expect = 4e-25
Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 19/208 (9%)
Query: 381 KSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEP 440
+L + + + +++D + ++ I ++ + L L N L ++
Sbjct: 22 IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN-VRYLALGGNKLHDIS- 79
Query: 441 TAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKY 500
A + L +L L+ N L SLP G FD L L+ L L L+S+P FD+L NL Y
Sbjct: 80 -ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 501 LCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFK 560
L LAHN L +P+ +F L NLT LDLS N + +L G L +K L L N+L
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL---- 193
Query: 561 GDYFNTKSKP-----NTSSLEELNLNNN 583
KS P +SL+ + L++N
Sbjct: 194 ------KSVPDGVFDRLTSLQYIWLHDN 215
Score = 100 bits (250), Expect = 1e-23
Identities = 60/230 (26%), Positives = 93/230 (40%), Gaps = 36/230 (15%)
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
K +L ++ + N + N N+ + S+ G L + L L L
Sbjct: 22 IKANLKKKSVTDAVTQNELNSIDQIIAN---NSDIKSVQ--GIQYLPNVRYLALGGNKLH 76
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS 545
I EL NL YL L N L +P +F L NL L L N + +L G
Sbjct: 77 DISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV------ 128
Query: 546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLA 605
F+KLT L LNL +N+L L F + L L L+
Sbjct: 129 -------FDKLTN----------------LTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165
Query: 606 FNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
+N+ P+ + L+ L+++ L NQLK++ D + L L+ + L++N
Sbjct: 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 78.5 bits (194), Expect = 3e-16
Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 21/206 (10%)
Query: 150 GHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIF 209
QI P F+ + + + ++ ++ L + + + I
Sbjct: 9 IKQIFPDDAFAETI----KANLKKKSVTDA------VTQNELNSIDQIIA----NNSDIK 54
Query: 210 STSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALR 269
S L N+R L L N++ I LK NL L + N+ S+P+ + L+
Sbjct: 55 SVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112
Query: 270 ILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKL 329
L + N++ +L F L + L N+L ++ G F+ L + L+L YN+L L
Sbjct: 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172
Query: 330 NSDTFQGGAFNGLAKIHILNLGYNRL 355
G F+ L ++ L L N+L
Sbjct: 173 PE-----GVFDKLTQLKDLRLYQNQL 193
Score = 77.0 bits (190), Expect = 9e-16
Identities = 49/244 (20%), Positives = 96/244 (39%), Gaps = 45/244 (18%)
Query: 460 LSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNL 519
P F K +L + +EL ++ + ++ + + + L
Sbjct: 10 KQIFPDDAFAETIKA---NLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYL 62
Query: 520 LNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELN 579
N+ YL L N + ++ +LT +L L
Sbjct: 63 PNVRYLALGGNKLHDISA---------------LKELT----------------NLTYLI 91
Query: 580 LNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDY 639
L N+L L F + LK L L N+ P + L+ L ++L++NQL+++
Sbjct: 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151
Query: 640 DYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT-------F 692
+ L L +L+L+ N + ++ E F +QL+ + L N+L+ +P+ +F+ +
Sbjct: 152 VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211
Query: 693 LYTN 696
L+ N
Sbjct: 212 LHDN 215
Score = 57.3 bits (139), Expect = 4e-09
Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 167 RRLDFSGNALRRLS--DKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILD 224
R L GN L +S +L + L L L N SL F L NL+ L
Sbjct: 66 RYLALGGNKLHDISALKELTN-----LTYLILTGNQLQ-SL----PNGVFDKLTNLKELV 115
Query: 225 LSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKAD 284
L +NQ++++ +G+ NL L + HN+ S+P + L L ++YN++ +L
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175
Query: 285 SF--LSQRWLERIILRGNRLTTIEGGAFNGLAKI-HI 318
F L+Q L+ + L N+L ++ G F+ L + +I
Sbjct: 176 VFDKLTQ--LKDLRLYQNQLKSVPDGVFDRLTSLQYI 210
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 99.1 bits (248), Expect = 2e-24
Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 11/167 (6%)
Query: 494 ELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSF 553
EL L + LT + L + L + L ++ LP +L +
Sbjct: 2 ELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIY 59
Query: 554 NKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFP 613
+LT K +L ELT L ++ + L+ + +
Sbjct: 60 QELTRLKAAVGELP------EKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTELK 112
Query: 614 KELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAI 660
+ L ++ +L + G LP K + +
Sbjct: 113 AA-VGELPEKSKLQEIYQELTQLKA-AVGELPDQSKQQQIYQELTDL 157
Score = 98.3 bits (246), Expect = 4e-24
Identities = 28/157 (17%), Positives = 48/157 (30%), Gaps = 6/157 (3%)
Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLS 461
L ++T L ++ +KL + L L A +P L L+
Sbjct: 6 KSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQ-ELT 63
Query: 462 SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN 521
L L + L L + EL L + LTE+ L
Sbjct: 64 RLK-AAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTELKA-AVGELPE 120
Query: 522 LTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558
+ L + L+ ++ LP + + +LT
Sbjct: 121 KSKLQEIYQELTQLKA-AVGELPDQSKQQQIYQELTD 156
Score = 93.7 bits (234), Expect = 2e-22
Identities = 28/163 (17%), Positives = 49/163 (30%), Gaps = 10/163 (6%)
Query: 376 DFQKLKSLDLNGNFLINL-ESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNN 434
+ + L L L + G L ++T L ++ +KL +
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQE 61
Query: 435 LKELEPTAFTNVPTLLHLNLSRNAHLSSLP--VGGFDPLKKLEVLDLAATGLKSIPQYQF 492
L L A +P L L+ L VG L + L L +
Sbjct: 62 LTRL-KAAVGELPEKSKLQEIYQ-ELTRLKAAVGE---LPEKSKLQEIYQELTELKA-AV 115
Query: 493 DELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL 535
EL L + LT++ + L + + + +L
Sbjct: 116 GELPEKSKLQEIYQELTQLKAAV-GELPDQSKQQQIYQELTDL 157
Score = 92.9 bits (232), Expect = 4e-22
Identities = 26/174 (14%), Positives = 45/174 (25%), Gaps = 24/174 (13%)
Query: 449 LLHLNLSRNAHLSSLP--VGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
L L+ L VG L + L L + EL L +
Sbjct: 6 KSKLQEIYQ-ELTRLKAAVGE---LPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQ 60
Query: 507 HLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNT 566
LT + L + L + L+ ++ LP +L + +LT
Sbjct: 61 ELTRLKAA-VGELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTEL------- 111
Query: 567 KSKPNT----SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKEL 616
+L ELT L ++ + + +
Sbjct: 112 ---KAAVGELPEKSKLQEIYQELTQL-KAAVGELPDQSKQQQIYQELTDLKTAF 161
Score = 82.1 bits (204), Expect = 2e-18
Identities = 21/144 (14%), Positives = 43/144 (29%), Gaps = 10/144 (6%)
Query: 543 LPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTL 602
LP +L + +LT K + +L ELT L ++ + L
Sbjct: 3 LPEKSKLQEIYQELTRLK------AAVGELPEKSKLQEIYQELTRL-KAAVGELPEKSKL 55
Query: 603 KLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE 662
+ + + + L ++ +L + G LP KL + +
Sbjct: 56 QEIYQELTRLKAA-VGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTELKA 113
Query: 663 TCFFNSSQLQIINLSFNRLEKLPE 686
+ + + L +L
Sbjct: 114 A-VGELPEKSKLQEIYQELTQLKA 136
Score = 78.3 bits (194), Expect = 4e-17
Identities = 28/173 (16%), Positives = 48/173 (27%), Gaps = 17/173 (9%)
Query: 342 LAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL-ESTGLED 400
L + L Y L +L + + + L L L + G
Sbjct: 3 LPEKSKLQEIYQELTRLKAA------------VGELPEKSKLQEIYQELTRLKAAVGELP 50
Query: 401 TLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHL 460
L ++T L ++ +KL + L L A +P L L
Sbjct: 51 EKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQ-EL 108
Query: 461 SSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE 513
+ L L + L L + EL + + LT++
Sbjct: 109 TELK-AAVGELPEKSKLQEIYQELTQLKA-AVGELPDQSKQQQIYQELTDLKT 159
Score = 63.6 bits (156), Expect = 5e-12
Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 24/178 (13%)
Query: 217 LVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
L L ++ ++ + + +L+ + T + + ++ L Y
Sbjct: 3 LPEKSKLQEIYQELTRLKAAVGE-LPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQ 60
Query: 277 RIGTLKAD-SFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQ 335
+ LKA L + ++ LT ++ A L + L Y L +L +
Sbjct: 61 ELTRLKAAVGELPE--KSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTELKA---- 113
Query: 336 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL 393
A L + L Y L +L + + L +L
Sbjct: 114 --AVGELPEKSKLQEIYQELTQLKAA------------VGELPDQSKQQQIYQELTDL 157
Score = 62.5 bits (153), Expect = 1e-11
Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 12/148 (8%)
Query: 212 SEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRIL 271
+ L L ++ ++ + + +L+ + T + + ++ L
Sbjct: 21 AAVGELPEKSKLQEIYQELTRLKAAVGE-LPEKSKLQEIYQELTRLKA-AVGELPEKSKL 78
Query: 272 SMAYNRIGTLKAD-SFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLN 330
Y + LKA L + ++ LT ++ A L + L Y L +L
Sbjct: 79 QEIYQELTRLKAAVGELPE--KSKLQEIYQELTELK-AAVGELPEKSKLQEIYQELTQLK 135
Query: 331 SDTFQGGAFNGLAKIHILNLGYNRLNKL 358
+ A L Y L L
Sbjct: 136 A------AVGELPDQSKQQQIYQELTDL 157
Score = 57.5 bits (140), Expect = 7e-10
Identities = 10/94 (10%), Positives = 26/94 (27%), Gaps = 3/94 (3%)
Query: 597 SKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNN 656
+ L+ + + + L ++ +L + G LP KL
Sbjct: 4 PEKSKLQEIYQELTRLKAA-VGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQE 61
Query: 657 IDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
+ + + + + L +L +
Sbjct: 62 LTRLKAA-VGELPEKSKLQEIYQELTRLKAAVGE 94
Score = 48.2 bits (116), Expect = 1e-06
Identities = 13/117 (11%), Positives = 32/117 (27%), Gaps = 10/117 (8%)
Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
+L L RL + +L+ L + L L
Sbjct: 53 SKLQEIYQELTRLKAAVGELPE--KSKLQEIYQEL-TRL-----KAAVGELPEKSKLQEI 104
Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKA 283
++ ++ + + +L+ + T + + ++ Y + LK
Sbjct: 105 YQELTELKAAVGE-LPEKSKLQEIYQELTQLKA-AVGELPDQSKQQQIYQELTDLKT 159
Score = 35.9 bits (84), Expect = 0.015
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 642 GYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
G LP KL + + + + + L +L +
Sbjct: 1 GELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTRLKAAVGE 48
Score = 29.0 bits (66), Expect = 3.7
Identities = 6/71 (8%), Positives = 15/71 (21%), Gaps = 8/71 (11%)
Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
+L L L + +L+ L L +
Sbjct: 99 SKLQEIYQELTELKAAVGELPE--KSKLQEIYQEL-TQLKA-----AVGELPDQSKQQQI 150
Query: 227 DNQIKAIEEGI 237
++ ++
Sbjct: 151 YQELTDLKTAF 161
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 99.7 bits (249), Expect = 1e-23
Identities = 49/280 (17%), Positives = 89/280 (31%), Gaps = 50/280 (17%)
Query: 408 RDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGG 467
R I + K +L ++ +L + + + N + ++ SL G
Sbjct: 5 RPTPINQVFPDP-GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNS-NIQSLA--G 58
Query: 468 FDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDL 527
L+ L L+ + + +L L+ L + N L + + L+ L L
Sbjct: 59 MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGI---PSACLSRLFL 113
Query: 528 SNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTY 587
NN + + SL L +++ L + NKL + S LE L+L+ NE+T
Sbjct: 114 DNNELRDTD--SLIHLKNLEILSIRNNKLKSIVM-------LGFLSKLEVLDLHGNEITN 164
Query: 588 LFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRL 647
+ L + IDL+ + Y P L
Sbjct: 165 TGG--------------------------LTRLKKVNWIDLTGQKCVNEPVK---YQPEL 195
Query: 648 RKLN-LNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPE 686
N + + + IS N + + E
Sbjct: 196 YITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDE 235
Score = 97.0 bits (242), Expect = 1e-22
Identities = 49/240 (20%), Positives = 83/240 (34%), Gaps = 18/240 (7%)
Query: 355 LNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITT 414
L +T ++ +++ + + + + +L L L++ NQI+
Sbjct: 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD 77
Query: 415 LSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKL 474
LS + L +L ++ N LK L L L L N L LK L
Sbjct: 78 LSPLK-DLTKLEELSVNRNRLKNLNGIPSAC---LSRLFLDNN-ELRDTD--SLIHLKNL 130
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
E+L + LKSI L L+ L L N +T L + ++DL+ VN
Sbjct: 131 EILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVN 186
Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFT 594
V L ++ N + G + + N S + + Y S+
Sbjct: 187 EPVKYQ------PELYIT-NTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYK 239
Score = 84.3 bits (209), Expect = 3e-18
Identities = 46/250 (18%), Positives = 82/250 (32%), Gaps = 26/250 (10%)
Query: 206 NPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP 265
PI GL N +L + + K + D++ S+ +
Sbjct: 7 TPINQVFPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA--GMQFF 62
Query: 266 RALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR 325
L+ L +++N+I L L++ LE + + NRL + G L L L N
Sbjct: 63 TNLKELHLSHNQISDLSPLKDLTK--LEELSVNRNRLKNLNGIPSACL---SRLFLDNNE 117
Query: 326 LNKLNSDTFQGGAFNGLAKIHILNLGYNR---------LNKLNSDTFQGTHITIFSFFQD 376
L +S L + IL++ N+ L+KL G IT
Sbjct: 118 LRDTDS-------LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTR 170
Query: 377 FQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNL 435
+K+ +DL G +N + V+D +S + N +
Sbjct: 171 LKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELP 230
Query: 436 KELEPTAFTN 445
+ ++
Sbjct: 231 VYTDEVSYKF 240
Score = 76.6 bits (189), Expect = 1e-15
Identities = 40/233 (17%), Positives = 75/233 (32%), Gaps = 33/233 (14%)
Query: 225 LSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKAD 284
I + G N ++ + T + VS ++ + + I +L
Sbjct: 4 QRPTPINQVFP--DPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSLAGM 59
Query: 285 SFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAK 344
F + L+ + L N+++ + L K+ L++ NRL LN A
Sbjct: 60 QFFTN--LKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLN--------GIPSAC 107
Query: 345 IHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDN 404
+ L L N L + L+ L + N L ++ G L+
Sbjct: 108 LSRLFLDNNELRDT-------------DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEV 154
Query: 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
L++ N+IT K + +DL+ L N ++
Sbjct: 155 LDLHGNEITNTGGLT-RLKKVNWIDLTGQKCVNEPVKYQPE---LYITNTVKD 203
Score = 49.6 bits (119), Expect = 1e-06
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 15/112 (13%)
Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
L + N L+ L+ + L L L +N + T L NL IL +
Sbjct: 88 EELSVNRNRLKNLNGIPSA----CLSRLFLDNNE-------LRDTDSLIHLKNLEILSIR 136
Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
+N++K+I L L L + N T+ L + + + + +
Sbjct: 137 NNKLKSIVM--LGFLSKLEVLDLHGNEITNTG--GLTRLKKVNWIDLTGQKC 184
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 99.3 bits (248), Expect = 4e-22
Identities = 83/425 (19%), Positives = 145/425 (34%), Gaps = 76/425 (17%)
Query: 316 IHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQ 375
I L++ L SD L + ++ L L T I S +
Sbjct: 5 IQSLDIQCEEL----SDARWAELLPLLQQCQVVRLDDCGL------TEARCKD-ISSALR 53
Query: 376 DFQKLKSLDLNGNFL----INLESTGLED---TLDNLNVRDNQITTLSSSAL-----NYK 423
L L+L N L ++ GL+ + L++++ +T L
Sbjct: 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 113
Query: 424 LLTKLDLSHNNL-----KELEPTAFTNVPTLLHLNLSRN-------AHLSSLPVGGFDPL 471
L +L LS N L + L L L L L+S+
Sbjct: 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV----LRAK 169
Query: 472 KKLEVLDLA-----ATGLKSIPQYQFDELLNLKYLCLAHNHLTE-----IPEMMFKNLLN 521
+ L ++ G++ + Q D L+ L L +T + + + +
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI-VASKAS 228
Query: 522 LTYLDLSNNNI-----VNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLE 576
L L L +N + L G L+ ++ L + +T KG + SL+
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA-KGCGDLCRVLRAKESLK 287
Query: 577 ELNLNNNELT-----YLFPSSFTIHSKLKTLKLAFNKF-NYFPKELILGLSY---LQEID 627
EL+L NEL L + +L++L + F L+ L E+
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347
Query: 628 LSNNQL-----KTIDDYDYGYLPRLRKLNLNNNNID-----AISETCFFNSSQLQIINLS 677
+SNN+L + + LR L L + ++ +++ T N S L+ ++LS
Sbjct: 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS-LRELDLS 406
Query: 678 FNRLE 682
N L
Sbjct: 407 NNCLG 411
Score = 97.3 bits (243), Expect = 2e-21
Identities = 88/501 (17%), Positives = 154/501 (30%), Gaps = 98/501 (19%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQI-----KAIEEGILKGCDNL 244
+Q L + D+ L +++ L D + K I L+ L
Sbjct: 4 DIQSLDIQCEELSDARWAELL----PLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPAL 58
Query: 245 LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTT 304
EL + N G + + L+ S ++++ L+ LT
Sbjct: 59 AELNLRSNEL---------GDVGVHCVLQG------LQTPSCK----IQKLSLQNCCLTG 99
Query: 305 IEG-----GAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLN 359
G L + L+L N L G + ++ L L Y L
Sbjct: 100 -AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL---- 154
Query: 360 SDTFQGTHITIFSFFQDFQKLKSLDLNGNFL----INLESTGLED---TLDNLNVRDNQI 412
+ + S + K L ++ N + + + GL+D L+ L + +
Sbjct: 155 --SAASCE-PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211
Query: 413 TTLSSSAL-----NYKLLTKLDLSHNNL-----KELEPTAFTNVPTLLHLNLSRN----- 457
T+ + L + L +L L N L EL P L L +
Sbjct: 212 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK 271
Query: 458 --AHLSSLPVGGFDPLKKLEVLDLA-----ATGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
L + L+ L LA G + + + + L+ L + T
Sbjct: 272 GCGDLCR----VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327
Query: 511 -----IPEMMFKNLLNLTYLDLSNNNIVNLRVGSL-----YGLPSMKRLDLSFNKLTTFK 560
++ +N L L +SNN + + V L ++ L L+ ++
Sbjct: 328 ACCSHFSSVLAQN-RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 386
Query: 561 GDYFNTKSKPNTSSLEELNLNNNELT-----YLFPSSFTIHSKLKTLKLAFNKFNYFPKE 615
N SL EL+L+NN L L S L+ L L ++
Sbjct: 387 CSSLAATLLANH-SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE--- 442
Query: 616 LILGLSYLQEIDLSNNQLKTI 636
LQ ++ L+ I
Sbjct: 443 ---MEDRLQALEKDKPSLRVI 460
Score = 97.0 bits (242), Expect = 2e-21
Identities = 82/466 (17%), Positives = 145/466 (31%), Gaps = 75/466 (16%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGD-SLNPIFSTSEFHGLVNLRILD 224
I+ LD L P Q +RL D + I S L L+
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA--LRVNPALAELN 62
Query: 225 LSDNQI-----KAIEEGILKGCDNLLELRMDHNRFT-----SIPSVSLNGPRALRILSMA 274
L N++ + +G+ + +L + + T + S L L+ L ++
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLS 121
Query: 275 YNRIG----TLKADSFLSQRW-LERIILRGNRLTTIE----GGAFNGLAKIHILNLGYNR 325
N +G L + L + LE++ L L+ L + N
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181
Query: 326 LNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDL 385
+N+ G + ++ L L + T + L+ L L
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGV------TSDNCRD-LCGIVASKASLRELAL 234
Query: 386 NGNFL----INLESTGLED---TLDNLNVRDNQITTLSSSAL-----NYKLLTKLDLSHN 433
N L + GL L L + + IT L + L +L L+ N
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294
Query: 434 NLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFD 493
L + L +P +LE L + + + F
Sbjct: 295 ELG--------------------DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334
Query: 494 ELL----NLKYLCLAHNHLT-----EIPEMMFKNLLNLTYLDLSNNNIVNLRVGS----L 540
+L L L +++N L E+ + + + L L L++ ++ + S L
Sbjct: 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394
Query: 541 YGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELT 586
S++ LDLS N L + LE+L L + +
Sbjct: 395 LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440
Score = 84.6 bits (210), Expect = 2e-17
Identities = 61/347 (17%), Positives = 105/347 (30%), Gaps = 67/347 (19%)
Query: 378 QKLKSLDLNGNFLINLESTGLEDTLDN---LNVRDNQITTLSSSAL-----NYKLLTKLD 429
++SLD+ L + L L + + D +T + L +L+
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 430 LSHNNL-----KELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
L N L + T + L+L L G L ++ L
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC----CLTGAGCGVL---------SSTL 109
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTE-----IPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539
+++P L+ L L+ N L + + E + L L L ++
Sbjct: 110 RTLP--------TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161
Query: 540 ----LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTY----LFPS 591
L P K L +S N + K + LE L L + +T
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221
Query: 592 SFTIHSKLKTLKLAFNKF-----NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYL-- 644
+ L+ L L NK L+ S L+ + + I G L
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG---ITAKGCGDLCR 278
Query: 645 -----PRLRKLNLNNNNID-----AISETCFFNSSQLQIINLSFNRL 681
L++L+L N + + ET QL+ + +
Sbjct: 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 91.7 bits (228), Expect = 3e-21
Identities = 47/129 (36%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
T LDL N+LK L F + +L L L N L SLP G F+ L L L+L+ L+
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS 545
S+P FD+L LK L L N L +P+ +F L L L L N + ++ G L S
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 546 MKRLDLSFN 554
++ + L N
Sbjct: 150 LQYIWLHDN 158
Score = 65.9 bits (161), Expect = 2e-12
Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 348 LNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED---TLDN 404
L+L N L L + F L L L GN L +L + G+ + +L
Sbjct: 33 LDLETNSLKSLPNGVFDE-----------LTSLTQLYLGGNKLQSLPN-GVFNKLTSLTY 80
Query: 405 LNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSS 462
LN+ NQ+ +L + + KL L +L L+ N L+ L F + L L L +N L S
Sbjct: 81 LNLSTNQLQSLPNGVFD-KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKS 138
Query: 463 LPVGGFDPLKKLEVLDL 479
+P G FD L L+ + L
Sbjct: 139 VPDGVFDRLTSLQYIWL 155
Score = 64.7 bits (158), Expect = 5e-12
Identities = 53/158 (33%), Positives = 71/158 (44%), Gaps = 29/158 (18%)
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
LDL LKS+P FDEL +L L L N L +P +F L +LTYL+LS N + +
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFT 594
L G F+KLT L+EL LN N+L L F
Sbjct: 91 LPNGV-------------FDKLT----------------QLKELALNTNQLQSLPDGVFD 121
Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
++LK L+L N+ P + L+ LQ I L +N
Sbjct: 122 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159
Score = 62.0 bits (151), Expect = 4e-11
Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 10/157 (6%)
Query: 528 SNNNIVNLRVGSLYGLPS-----MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNN 582
+ V +P+ LDL N L + F+ + L +L L
Sbjct: 7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTS-----LTQLYLGG 61
Query: 583 NELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYG 642
N+L L F + L L L+ N+ P + L+ L+E+ L+ NQL+++ D +
Sbjct: 62 NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD 121
Query: 643 YLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679
L +L+ L L N + ++ + F + LQ I L N
Sbjct: 122 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 58.1 bits (141), Expect = 1e-09
Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 7/131 (5%)
Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
+ L+L N L L F + L L L NK P + L+ L ++LS NQ
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 633 LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT- 691
L+++ + + L +L++L LN N + ++ + F +QL+ + L N+L+ +P+ +F+
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147
Query: 692 ------FLYTN 696
+L+ N
Sbjct: 148 TSLQYIWLHDN 158
Score = 56.6 bits (137), Expect = 3e-09
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Query: 246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI 305
L ++ N S+P+ + +L L + N++ +L F L + L N+L ++
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 306 EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 365
G F+ L ++ L L N+L L G F+ L ++ L L N+L + F
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPD-----GVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146
Query: 366 ----THITIFS 372
+I +
Sbjct: 147 LTSLQYIWLHD 157
Score = 56.2 bits (136), Expect = 3e-09
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNG 312
TS+P+ P L + N + +L F L ++ L GN+L ++ G FN
Sbjct: 18 GRTSVPT---GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK 74
Query: 313 LAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKL 358
L + LNL N+L L + G F+ L ++ L L N+L L
Sbjct: 75 LTSLTYLNLSTNQLQSLPN-----GVFDKLTQLKELALNTNQLQSL 115
Score = 55.5 bits (134), Expect = 6e-09
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 9/137 (6%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
L L N F L +L L L N+++++ G+ +L L +
Sbjct: 29 QTTYLDLETNSLKS-----LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSF--LSQRWLERIILRGNRLTTIEG 307
N+ S+P+ + L+ L++ N++ +L F L+Q L+ + L N+L ++
Sbjct: 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ--LKDLRLYQNQLKSVPD 141
Query: 308 GAFNGLAKIHILNLGYN 324
G F+ L + + L N
Sbjct: 142 GVFDRLTSLQYIWLHDN 158
Score = 50.8 bits (122), Expect = 3e-07
Identities = 25/95 (26%), Positives = 49/95 (51%)
Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN 654
I ++ L L N P + L+ L ++ L N+L+++ + + L L LNL+
Sbjct: 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85
Query: 655 NNIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
N + ++ F +QL+ + L+ N+L+ LP+ +F
Sbjct: 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 89.6 bits (223), Expect = 9e-21
Identities = 28/185 (15%), Positives = 72/185 (38%), Gaps = 10/185 (5%)
Query: 377 FQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLK 436
F+ + L + N+ + ++L + + + +T L+ + L +++ +
Sbjct: 22 FKAYLNGLLGQSSTANITEAQM-NSLTYITLANINVTDLTGIE-YAHNIKDLTINNIHAT 79
Query: 437 ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELL 496
P + + L L + ++S + L L +LD++ + + + L
Sbjct: 80 NYNP--ISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136
Query: 497 NLKYLCLAHNH-LTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK 555
+ + L++N +T+I K L L L++ + + + R + P + +L
Sbjct: 137 KVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQT 192
Query: 556 LTTFK 560
+ K
Sbjct: 193 IGGKK 197
Score = 87.7 bits (218), Expect = 6e-20
Identities = 31/191 (16%), Positives = 76/191 (39%), Gaps = 12/191 (6%)
Query: 470 PLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN 529
P + G S ++ +L Y+ LA+ ++T++ + N+ L ++N
Sbjct: 18 PDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75
Query: 530 NNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLF 589
+ N + GL +++RL + +T+ K + +SL L+++++
Sbjct: 76 IHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLS-----GLTSLTLLDISHSAHDDSI 128
Query: 590 PSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRK 649
+ K+ ++ L++N L L L+ +++ + + + P+L +
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIMPLK-TLPELKSLNIQFDGVHDYRGIED--FPKLNQ 185
Query: 650 LNLNNNNIDAI 660
L + I
Sbjct: 186 LYAFSQTIGGK 196
Score = 82.7 bits (205), Expect = 2e-18
Identities = 40/208 (19%), Positives = 77/208 (37%), Gaps = 20/208 (9%)
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
+ A+ +IP F LN L + I E + +LTY+ L+N N+ +
Sbjct: 5 QTGLKASQDNVNIPDSTFKAYLNG---LLGQSSTANITE---AQMNSLTYITLANINVTD 58
Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFT 594
L + ++K L ++ T + S+LE L + ++T + +
Sbjct: 59 LT--GIEYAHNIKDLTINNIHATNYNP-------ISGLSNLERLRIMGKDVTSDKIPNLS 109
Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLS-NNQLKTIDDYDYGYLPRLRKLNLN 653
+ L L ++ + + I L + IDLS N + I LP L+ LN+
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQ 167
Query: 654 NNNIDAISETCFFNSSQLQIINLSFNRL 681
+ + + +L + +
Sbjct: 168 FDGVHDYRG--IEDFPKLNQLYAFSQTI 193
Score = 82.3 bits (204), Expect = 3e-18
Identities = 31/190 (16%), Positives = 65/190 (34%), Gaps = 16/190 (8%)
Query: 421 NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLA 480
+K L ++ + + L ++ L+ +++ L G + ++ L +
Sbjct: 21 TFKAYLNGLLGQSSTANITEAQMNS---LTYITLANI-NVTDLT--GIEYAHNIKDLTIN 74
Query: 481 ATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSL 540
+ L NL+ L + +T L +LT LD+S++ + + +
Sbjct: 75 NIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132
Query: 541 YGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLK 600
LP + +DLS+N T + L+ LN+ + + KL
Sbjct: 133 NTLPKVNSIDLSYNGAIT------DIMPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLN 184
Query: 601 TLKLAFNKFN 610
L
Sbjct: 185 QLYAFSQTIG 194
Score = 81.2 bits (201), Expect = 1e-17
Identities = 31/171 (18%), Positives = 63/171 (36%), Gaps = 5/171 (2%)
Query: 342 LAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDT 401
L + N+ ++N L T ++T + + +K L +N N
Sbjct: 30 LGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSN 89
Query: 402 LDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHL 460
L+ L + +T+ L LT LD+SH+ + T +P + ++LS N +
Sbjct: 90 LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149
Query: 461 SSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEI 511
+ + L +L+ L++ G+ ++ L L +
Sbjct: 150 TDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGGK 196
Score = 65.0 bits (159), Expect = 4e-12
Identities = 23/199 (11%), Positives = 67/199 (33%), Gaps = 22/199 (11%)
Query: 242 DNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNR 301
+S +++ +L +++A + L + ++ + +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHN--IKDLTINNIH 77
Query: 302 LTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSD 361
T +GL+ + L + + +GL + +L++ ++ +
Sbjct: 78 ATNYNP--ISGLSNLERLRIMGKDVTSDKIP-----NLSGLTSLTLLDISHSAHD----- 125
Query: 362 TFQGTHITIFSFFQDFQKLKSLDLNGNFLI-NLESTGLEDTLDNLNVRDNQITTLSSSAL 420
+I + K+ S+DL+ N I ++ L +LN++ + +
Sbjct: 126 ------DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIE- 178
Query: 421 NYKLLTKLDLSHNNLKELE 439
++ L +L + +
Sbjct: 179 DFPKLNQLYAFSQTIGGKK 197
Score = 63.4 bits (155), Expect = 1e-11
Identities = 32/197 (16%), Positives = 69/197 (35%), Gaps = 24/197 (12%)
Query: 217 LVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
L + I E + +L + + + T + + ++ L++
Sbjct: 22 FKAYLNGLLGQSSTANITEAQMN---SLTYITLANINVTDLTG--IEYAHNIKDLTINNI 76
Query: 277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 336
S LS LER+ + G +T+ + +GL + +L++ ++ +
Sbjct: 77 HATNYNPISGLSN--LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT---- 130
Query: 337 GAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLEST 396
N L K++ ++L YN IT + +LKSL++ + + +
Sbjct: 131 -KINTLPKVNSIDLSYNGA------------ITDIMPLKTLPELKSLNIQFDGVHDYRGI 177
Query: 397 GLEDTLDNLNVRDNQIT 413
L+ L I
Sbjct: 178 EDFPKLNQLYAFSQTIG 194
Score = 53.8 bits (130), Expect = 2e-08
Identities = 20/140 (14%), Positives = 50/140 (35%), Gaps = 12/140 (8%)
Query: 191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMD 250
+++L + + + + GL NL L + + + + L G +L L +
Sbjct: 68 IKDLTINNI-------HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120
Query: 251 HNRFTSIPSVSLNGPRALRILSMAYN-RIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
H+ +N + + ++YN I + L + L+ + ++ + + G
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE--LKSLNIQFDGVHDYRG-- 176
Query: 310 FNGLAKIHILNLGYNRLNKL 329
K++ L +
Sbjct: 177 IEDFPKLNQLYAFSQTIGGK 196
Score = 44.9 bits (107), Expect = 2e-05
Identities = 11/113 (9%), Positives = 35/113 (30%), Gaps = 7/113 (6%)
Query: 570 PNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLS 629
+ L + + + L + LA I ++++ ++
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMN---SLTYITLANINVTDL--TGIEYAHNIKDLTIN 74
Query: 630 NNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE 682
N + L L +L + ++ + + L ++++S + +
Sbjct: 75 NIHATNYNPI--SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125
Score = 28.0 bits (63), Expect = 8.3
Identities = 6/65 (9%), Positives = 19/65 (29%), Gaps = 5/65 (7%)
Query: 620 LSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679
L + I + + L + L N N+ ++ + ++ + ++
Sbjct: 22 FKAYLNGLLGQSSTANITEAQ---MNSLTYITLANINVTDLTGIEYA--HNIKDLTINNI 76
Query: 680 RLEKL 684
Sbjct: 77 HATNY 81
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 90.1 bits (224), Expect = 1e-20
Identities = 48/129 (37%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
L L N + +LEP F ++ L L L N L +LPVG FD L +L VLDL L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS 545
+P FD L++LK L + N LTE+P + L +LT+L L N + ++ G+ L S
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160
Query: 546 MKRLDLSFN 554
+ L N
Sbjct: 161 LTHAYLFGN 169
Score = 79.0 bits (195), Expect = 1e-16
Identities = 41/132 (31%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 452 LNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEI 511
L L N ++ L G FD L L+ L L + L ++P FD L L L L N LT +
Sbjct: 45 LYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 512 PEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPN 571
P +F L++L L + N + L G + L + L L N+L + F+
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFD-----R 157
Query: 572 TSSLEELNLNNN 583
SSL L N
Sbjct: 158 LSSLTHAYLFGN 169
Score = 64.7 bits (158), Expect = 7e-12
Identities = 44/157 (28%), Positives = 64/157 (40%), Gaps = 30/157 (19%)
Query: 499 KYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558
+ L L N +T++ +F +L+NL L L +N + L VG F+ LT
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV-------------FDSLTQ 89
Query: 559 FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL 618
L L+L N+LT L + F LK L + NK P+ I
Sbjct: 90 ----------------LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IE 132
Query: 619 GLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
L++L + L NQLK+I + L L L N
Sbjct: 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 59.3 bits (144), Expect = 4e-10
Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 38/165 (23%)
Query: 293 ERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGY 352
+ + L N++T +E G F+ L + L LG N+L L G F+ L ++ +L+LG
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV-----GVFDSLTQLTVLDLGT 97
Query: 353 NRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQI 412
N+L L S F + LK L + N++
Sbjct: 98 NQLTVLPSAVFD--RLV---------HLKELFMC----------------------CNKL 124
Query: 413 TTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
T L LT L L N LK + AF + +L H L N
Sbjct: 125 TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 56.6 bits (137), Expect = 4e-09
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNG 312
R S+P+ P +IL + N+I L+ F S L+ + L N+L + G F+
Sbjct: 30 RHASVPA---GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS 86
Query: 313 LAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKL 358
L ++ +L+LG N+L L S F+ L + L + N+L +L
Sbjct: 87 LTQLTVLDLGTNQLTVLPS-----AVFDRLVHLKELFMCCNKLTEL 127
Score = 55.9 bits (135), Expect = 7e-09
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 576 EELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKT 635
+ L L++N++T L P F LK L L N+ P + L+ L +DL NQL
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 636 IDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT---- 691
+ + L L++L + N + + + L + L N+L+ +P F+
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Query: 692 ---FLYTN 696
+L+ N
Sbjct: 162 THAYLFGN 169
Score = 53.2 bits (128), Expect = 6e-08
Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 10/131 (7%)
Query: 246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI 305
L + N+ T + + L+ L + N++G L F S L + L N+LT +
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 306 EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 365
F+ L + L + N+L +L L + L L N+L + F
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPR------GIERLTHLTHLALDQNQLKSIPHGAFDR 157
Query: 366 ----THITIFS 372
TH +F
Sbjct: 158 LSSLTHAYLFG 168
Score = 52.0 bits (125), Expect = 1e-07
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 7/130 (5%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
Q L L DN L P F L+NL+ L L NQ+ A+ G+ L L +
Sbjct: 41 NAQILYLHDNQI-TKLEP----GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
N+ T +PS + L+ L M N++ L L + L N+L +I GA
Sbjct: 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGA 154
Query: 310 FNGLAKI-HI 318
F+ L+ + H
Sbjct: 155 FDRLSSLTHA 164
Score = 48.2 bits (115), Expect = 3e-06
Identities = 22/92 (23%), Positives = 40/92 (43%)
Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN 654
I + + L L N+ + L L+E+ L +NQL + + L +L L+L
Sbjct: 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97
Query: 655 NNIDAISETCFFNSSQLQIINLSFNRLEKLPE 686
N + + F L+ + + N+L +LP
Sbjct: 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPR 129
Score = 47.8 bits (114), Expect = 3e-06
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
N +IL L DNQI +E G+ NL EL + N+ ++P + L +L + N+
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
+ L + F L+ + + N+LT + G L + L L N+L + G
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPH-----G 153
Query: 338 AFNGLAKI-HI 347
AF+ L+ + H
Sbjct: 154 AFDRLSSLTHA 164
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 87.4 bits (217), Expect = 5e-20
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
T+L L N L P +N L ++LS N +S+L F + +L L L+ L+
Sbjct: 34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
IP FD L +L+ L L N ++ +PE F +L L++L + N
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 82.7 bits (205), Expect = 2e-18
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
G+ + L + NQ T + NYK LT +DLS+N + L +F+N+ LL L LS
Sbjct: 27 KGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
N L +P FD LK L +L L + +P+ F++L L +L + N
Sbjct: 87 YN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 68.5 bits (168), Expect = 2e-13
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 452 LNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEI 511
L L N + +P K L ++DL+ + ++ F + L L L++N L I
Sbjct: 36 LYLDGN-QFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 512 PEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
P F L +L L L N+I + G+ L ++ L + N
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 64.6 bits (158), Expect = 4e-12
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
L L +P+ + +L + L++N ++ + F N+ L L LS N +
Sbjct: 34 TELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
+ + GL S++ L L N ++ FN + S+L L + N
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFN-----DLSALSHLAIGAN 136
Score = 60.8 bits (148), Expect = 8e-11
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI 305
EL +D N+FT +P L+ + L ++ ++ NRI TL SF + L +IL NRL I
Sbjct: 35 ELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 306 EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYN 353
F+GL + +L+L N ++ GAFN L+ + L +G N
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDIS-----VVPEGAFNDLSALSHLAIGAN 136
Score = 58.5 bits (142), Expect = 5e-10
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 30/135 (22%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
+ EL L N F +L P E +L ++DLS+N+I + LL L +
Sbjct: 32 DVTELYLDGNQF--TLVP----KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
+NR IP + +G ++LR+LS L GN ++ + GA
Sbjct: 86 SYNRLRCIPPRTFDGLKSLRLLS------------------------LHGNDISVVPEGA 121
Query: 310 FNGLAKIHILNLGYN 324
FN L+ + L +G N
Sbjct: 122 FNDLSALSHLAIGAN 136
Score = 58.5 bits (142), Expect = 6e-10
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 11/132 (8%)
Query: 529 NNNIVNLRVGSLYGLPS-----MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
+ +V L LP + L L N+ T + N K L ++L+NN
Sbjct: 11 LDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKH------LTLIDLSNN 64
Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGY 643
++ L SF+ ++L TL L++N+ P GL L+ + L N + + + +
Sbjct: 65 RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND 124
Query: 644 LPRLRKLNLNNN 655
L L L + N
Sbjct: 125 LSALSHLAIGAN 136
Score = 55.4 bits (134), Expect = 6e-09
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDA 659
L L N+F PKEL +L IDLSNN++ T+ + + + +L L L+ N +
Sbjct: 34 TELYLDGNQFTLVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 660 ISETCFFNSSQLQIINLSFNRLEKLPERLFNT-------FLYTN 696
I F L++++L N + +PE FN + N
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 52.7 bits (127), Expect = 4e-08
Identities = 28/162 (17%), Positives = 50/162 (30%), Gaps = 63/162 (38%)
Query: 318 ILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDF 377
L L N+ T + + +++L NR++ L++ +F
Sbjct: 35 ELYLDGNQF------TLVPKELSNYKHLTLIDLSNNRISTLSNQSF-------------- 74
Query: 378 QKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKE 437
+ L L LS+N L+
Sbjct: 75 ----------------------SNMTQL--------------------LTLILSYNRLRC 92
Query: 438 LEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
+ P F + +L L+L N +S +P G F+ L L L +
Sbjct: 93 IPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAI 133
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 87.6 bits (218), Expect = 4e-19
Identities = 62/280 (22%), Positives = 99/280 (35%), Gaps = 56/280 (20%)
Query: 417 SSALNYKLLTKLDLSHNNL--KELEPTAFTNVPTLLHLNLSRNAHLS-SLPVGGFDPLKK 473
+ + LDLS NL P++ N+P L L + +L +P L +
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQ 102
Query: 474 LEVLDLAATGLK-SIPQYQFDELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNN 531
L L + T + +IP ++ L L ++N L+ +P + +L NL + N
Sbjct: 103 LHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNR 160
Query: 532 IVNLRVG----SLYGLPSMKR-LDLSFNKLTTFKGDYFNTKSKPNT---SSLEELNLNNN 583
I G S + + +S N+LT G P T +L ++L+ N
Sbjct: 161 IS----GAIPDSYGSFSKLFTSMTISRNRLT---G------KIPPTFANLNLAFVDLSRN 207
Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFN-YFPKELILGLSYLQEIDLSNNQLKTIDDYDYG 642
L F + + LA N K + L +DL NN++ YG
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRI-------YG 258
Query: 643 YLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE 682
LP L +N+SFN L
Sbjct: 259 TLP-----------------QGLTQLKFLHSLNVSFNNLC 281
Score = 75.6 bits (187), Expect = 5e-15
Identities = 43/199 (21%), Positives = 73/199 (36%), Gaps = 37/199 (18%)
Query: 378 QKLKSLDLNGNFLI--------NLESTGLEDTLDNLNVRDNQIT-TLSSSALNYKLLTKL 428
+L L + + +++ L L+ N ++ TL S + L +
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKT------LVTLDFSYNALSGTLPPSISSLPNLVGI 154
Query: 429 DLSHNNLKELEPTAFTNVPTLL-HLNLSRNAHLS-SLP--VGGFDPLKKLEVLDLAATGL 484
N + P ++ + L + +SRN L+ +P L +DL+ L
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANL----NLAFVDLSRNML 209
Query: 485 K-SIPQYQFDELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNNIVNLRVG---- 538
+ F N + + LA N L ++ + NL LDL NN I G
Sbjct: 210 EGDASV-LFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRI----YGTLPQ 262
Query: 539 SLYGLPSMKRLDLSFNKLT 557
L L + L++SFN L
Sbjct: 263 GLTQLKFLHSLNVSFNNLC 281
Score = 64.1 bits (157), Expect = 3e-11
Identities = 50/232 (21%), Positives = 89/232 (38%), Gaps = 42/232 (18%)
Query: 313 LAKIHILNLGYNRLNKLNSDTFQGGA----FNGLAKIHILNLGYNRLNKLNSDTFQGTHI 368
L ++H L + + ++ GA + + + L+ YN L+ GT
Sbjct: 100 LTQLHYLYITHTNVS---------GAIPDFLSQIKTLVTLDFSYNALS--------GT-- 140
Query: 369 TIFSFFQDFQKLKSLDLNGNFL---INLESTGLEDTLDNLNVRDNQIT-TLSSS--ALNY 422
+ L + +GN + I ++ + N++T + + LN
Sbjct: 141 -LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198
Query: 423 KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLS-SLPVGGFDPLKKLEVLDLAA 481
L +DLS N L+ F + ++L++N L+ L G K L LDL
Sbjct: 199 --LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGL--SKNLNGLDLRN 253
Query: 482 TGLK-SIPQYQFDELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNN 531
+ ++PQ +L L L ++ N+L EIP+ NL +NN
Sbjct: 254 NRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK 302
Score = 56.8 bits (138), Expect = 9e-09
Identities = 41/185 (22%), Positives = 66/185 (35%), Gaps = 25/185 (13%)
Query: 518 NLLNLTYLDLSNNNIVNLRV--GSLYGLPSMKRLDLS-FNKLTTFKGDYFNTKSKPNT-- 572
+ LDLS N+ SL LP + L + N L G P
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV---G------PIPPAIA 98
Query: 573 --SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFN-YFPKELILGLSYLQEIDLS 629
+ L L + + ++ P + L TL ++N + P + L L I
Sbjct: 99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFD 157
Query: 630 NNQLK-TIDDYDYGYLPRL-RKLNLNNNNID-AISETCFFNSSQLQIINLSFNRLE-KLP 685
N++ I D YG +L + ++ N + I T F + L ++LS N LE
Sbjct: 158 GNRISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPPT--FANLNLAFVDLSRNMLEGDAS 214
Query: 686 ERLFN 690
+
Sbjct: 215 VLFGS 219
Score = 53.3 bits (129), Expect = 1e-07
Identities = 54/278 (19%), Positives = 86/278 (30%), Gaps = 82/278 (29%)
Query: 212 SEFHGLVNLRILDLSDNQIKAIEEGI----LKGCDNLLELRMDHNRFT-SIPSVSLNGPR 266
L L L ++ + G L L+ L +N + ++P
Sbjct: 95 PAIAKLTQLHYLYITHTNV----SGAIPDFLSQIKTLVTLDFSYNALSGTLPPS------ 144
Query: 267 ALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLT-TI--EGGAFNGLAKIHILNLGY 323
I +L L I GNR++ I G+F+ L + +
Sbjct: 145 -----------ISSLPN--------LVGITFDGNRISGAIPDSYGSFSKLFT--SMTISR 183
Query: 324 NRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSL 383
NRL TF + ++L N L G F + + +
Sbjct: 184 NRLTGKIPPTF------ANLNLAFVDLSRNMLE--------G---DASVLFGSDKNTQKI 226
Query: 384 DLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAF 443
L N L + + S K L LDL +N + P
Sbjct: 227 HLAKNSL-----AF-------------DLGKVGLS----KNLNGLDLRNNRIYGTLPQGL 264
Query: 444 TNVPTLLHLNLSRNAHLS-SLPVGGFDPLKKLEVLDLA 480
T + L LN+S N +L +P GG L++ +V A
Sbjct: 265 TQLKFLHSLNVSFN-NLCGEIPQGG--NLQRFDVSAYA 299
Score = 32.1 bits (74), Expect = 0.62
Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 12/97 (12%)
Query: 166 IRRLDFSGNALR-RLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILD 224
+ +D S N L S S Q++ LA N L + NL LD
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDK--NTQKIHLAKNSLAFDL------GKVGLSKNLNGLD 250
Query: 225 LSDNQIK-AIEEGILKGCDNLLELRMDHNRFT-SIPS 259
L +N+I + +G L L L + N IP
Sbjct: 251 LRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIPQ 286
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 81.9 bits (203), Expect = 3e-18
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 24/135 (17%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
TG+ + L + N++ + L F + L L+LS
Sbjct: 24 TGIPSSATRLELESNKLQS-----------------------LPHGVFDKLTQLTKLSLS 60
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
+N + SLP G FD L KL +L L L+S+P FD+L LK L L N L +P+ +
Sbjct: 61 QN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI 119
Query: 516 FKNLLNLTYLDLSNN 530
F L +L + L N
Sbjct: 120 FDRLTSLQKIWLHTN 134
Score = 74.6 bits (184), Expect = 1e-15
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 444 TNVPT-LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLC 502
T +P+ L L N L SLP G FD L +L L L+ ++S+P FD+L L L
Sbjct: 24 TGIPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82
Query: 503 LAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
L N L +P +F L L L L N + ++ G L S++++ L N
Sbjct: 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 58.8 bits (143), Expect = 3e-10
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 381 KSLDLNGNFLINLESTGLEDTLDN---LNVRDNQITTLSSSALNYKL--LTKLDLSHNNL 435
L+L N L +L G+ D L L++ NQI +L + KL LT L L N L
Sbjct: 31 TRLELESNKLQSLPH-GVFDKLTQLTKLSLSQNQIQSLPDGVFD-KLTKLTILYLHENKL 88
Query: 436 KELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
+ L F + L L L N L S+P G FD L L+ + L
Sbjct: 89 QSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWL 131
Score = 53.8 bits (130), Expect = 2e-08
Identities = 29/107 (27%), Positives = 53/107 (49%)
Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
SS L L +N+L L F ++L L L+ N+ P + L+ L + L N+
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 633 LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679
L+++ + + L +L++L L+ N + ++ + F + LQ I L N
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 53.0 bits (128), Expect = 3e-08
Identities = 39/134 (29%), Positives = 51/134 (38%), Gaps = 29/134 (21%)
Query: 499 KYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558
L L N L +P +F L LT L LS N I +L G F+KLT
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG-------------VFDKLT- 76
Query: 559 FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL 618
L L L+ N+L L F ++LK L L N+ P +
Sbjct: 77 ---------------KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFD 121
Query: 619 GLSYLQEIDLSNNQ 632
L+ LQ+I L N
Sbjct: 122 RLTSLQKIWLHTNP 135
Score = 52.3 bits (126), Expect = 6e-08
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNG 312
TS+P+ P + L + N++ +L F L ++ L N++ ++ G F+
Sbjct: 18 GLTSVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK 74
Query: 313 LAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQG----THI 368
L K+ IL L N+L L + G F+ L ++ L L N+L + F I
Sbjct: 75 LTKLTILYLHENKLQSLPN-----GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
Query: 369 TIFS 372
+ +
Sbjct: 130 WLHT 133
Score = 47.6 bits (114), Expect = 2e-06
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 7/109 (6%)
Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN 654
I S L+L NK P + L+ L ++ LS NQ++++ D + L +L L L+
Sbjct: 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85
Query: 655 NNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT-------FLYTN 696
N + ++ F +QL+ + L N+L+ +P+ +F+ +L+TN
Sbjct: 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 46.1 bits (110), Expect = 8e-06
Identities = 24/107 (22%), Positives = 49/107 (45%)
Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
+ L+L N+++++ G+ L +L + N+ S+P + L IL + N+
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
+ +L F L+ + L N+L ++ G F+ L + + L N
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 44.2 bits (105), Expect = 3e-05
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 162 SDIPI--RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
+ IP RL+ N L+ L +F L +L L+ N SL F L
Sbjct: 24 TGIPSSATRLELESNKLQSLPHGVFD-KLTQLTKLSLSQNQI-QSLPD----GVFDKLTK 77
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIP 258
L IL L +N+++++ G+ L EL +D N+ S+P
Sbjct: 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116
Score = 42.6 bits (101), Expect = 1e-04
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 247 LRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE 306
L ++ N+ S+P + L LS++ N+I +L F L + L N+L ++
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 307 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYN 353
G F+ L ++ L L N+L + G F+ L + + L N
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPD-----GIFDRLTSLQKIWLHTN 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 81.6 bits (202), Expect = 5e-18
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLLHLN 453
+ L + DN++ +SS L +L L KL+L N L +EP AF + L
Sbjct: 25 RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84
Query: 454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
L N + + F L +L+ L+L + + F+ L +L L LA N
Sbjct: 85 LGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 73.1 bits (180), Expect = 5e-15
Identities = 32/103 (31%), Positives = 45/103 (43%)
Query: 452 LNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEI 511
L L+ N G F L L L+L L I F+ +++ L L N + EI
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93
Query: 512 PEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
MF L L L+L +N I + GS L S+ L+L+ N
Sbjct: 94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 70.0 bits (172), Expect = 6e-14
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Query: 475 EVLDLAATGLKSI-PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIV 533
L L L I F L +L L L N LT I F+ ++ L L N I
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 534 NLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
+ GL +K L+L N+++ F + +SL LNL +N
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFE-----HLNSLTSLNLASN 136
Score = 66.2 bits (162), Expect = 1e-12
Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 28/133 (21%)
Query: 192 QELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDH 251
EL L DN L I S F L +L L+L NQ+ IE +G ++ EL++
Sbjct: 32 TELLLNDN----ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87
Query: 252 NRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFN 311
N+ I + G L+ L+ L N+++ + G+F
Sbjct: 88 NKIKEISNKMFLGLHQLKTLN------------------------LYDNQISCVMPGSFE 123
Query: 312 GLAKIHILNLGYN 324
L + LNL N
Sbjct: 124 HLNSLTSLNLASN 136
Score = 60.8 bits (148), Expect = 8e-11
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 542 GLP-SMKRLDLSFNKLTTFKGD-YFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKL 599
+P L L+ N+L D F L +L L N+LT + P++F S +
Sbjct: 26 DIPLHTTELLLNDNELGRISSDGLFG-----RLPHLVKLELKRNQLTGIEPNAFEGASHI 80
Query: 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
+ L+L NK ++ LGL L+ ++L +NQ+ + + +L L LNL +N
Sbjct: 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 60.8 bits (148), Expect = 9e-11
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKAD-SFLSQRWLERIILRGNRLTTIEGGAFN 311
IP + P L + N +G + +D F L ++ L+ N+LT IE AF
Sbjct: 19 GLKEIPR---DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE 75
Query: 312 GLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRL 355
G + I L LG N++ ++++ F GL ++ LNL N++
Sbjct: 76 GASHIQELQLGENKIKEISN-----KMFLGLHQLKTLNLYDNQI 114
Score = 52.3 bits (126), Expect = 7e-08
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 600 KTLKLAFNKFNYFPKELIL-GLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
L L N+ + + L +L +++L NQL I+ + +++L L N I
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 659 AISETCFFNSSQLQIINLSFNRLEKLPERLFNT-------FLYTN 696
IS F QL+ +NL N++ + F L +N
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 50.4 bits (121), Expect = 3e-07
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 17/97 (17%)
Query: 293 ERIILRGNRLTTIE-GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLG 351
++L N L I G F L + L L N+L + AF G + I L LG
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-----NAFEGASHIQELQLG 86
Query: 352 YNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN 388
N++ ++++ F G H +LK+L+L N
Sbjct: 87 ENKIKEISNKMFLGLH-----------QLKTLNLYDN 112
Score = 49.6 bits (119), Expect = 6e-07
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 162 SDIPI--RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
DIP+ L + N L R+S L +L L N + P + F G +
Sbjct: 25 RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEP----NAFEGASH 79
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIP 258
++ L L +N+IK I + G L L + N+ + +
Sbjct: 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 85.2 bits (210), Expect = 2e-17
Identities = 44/311 (14%), Positives = 91/311 (29%), Gaps = 19/311 (6%)
Query: 344 KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLD 403
++ L L + + SL+ D+
Sbjct: 270 RMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQK 329
Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
+ ++ + + L + +LS L + + L L L ++
Sbjct: 330 ECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVL-QSELESCKELQELEPENKWCLLTI 388
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
++ L+ L L+ + + + YL + ++ ++
Sbjct: 389 ----ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVR 444
Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
L L++ ++ L L L + LDLS N+L + LE L ++N
Sbjct: 445 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRAL------PPALAALRCLEVLQASDN 496
Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILG-LSYLQEIDLSNNQLKTIDDYD-- 640
L + +L+ L L N+ L L ++L N L +
Sbjct: 497 ALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554
Query: 641 -YGYLPRLRKL 650
LP + +
Sbjct: 555 LAEMLPSVSSI 565
Score = 76.7 bits (188), Expect = 1e-14
Identities = 46/272 (16%), Positives = 93/272 (34%), Gaps = 17/272 (6%)
Query: 416 SSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLE 475
S + L L+ + +T + L ++ ++L
Sbjct: 295 RPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD--SATDEQLF 352
Query: 476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL 535
+L+ + + + L+ L + ++ + L L Y + L
Sbjct: 353 RCELSVEKSTVLQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 411
Query: 536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTI 595
+ ++ + + DL L K + + L+L + +LT L
Sbjct: 412 K--AVDPMRAAYLDDLRSKFLLENS------VLKMEYADVRVLHLAHKDLTVL--CHLEQ 461
Query: 596 HSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
+ L L+ N+ P L L L+ + S+N L+ +D LPRL++L L NN
Sbjct: 462 LLLVTHLDLSHNRLRALPPALA-ALRCLEVLQASDNALENVD--GVANLPRLQELLLCNN 518
Query: 656 NIDAISE-TCFFNSSQLQIINLSFNRLEKLPE 686
+ + + +L ++NL N L +
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550
Score = 67.9 bits (165), Expect = 6e-12
Identities = 47/297 (15%), Positives = 90/297 (30%), Gaps = 28/297 (9%)
Query: 209 FSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRAL 268
+ L +L L+D + I G D+ E + +R S L
Sbjct: 293 RNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT-DEQL 351
Query: 269 RILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNK 328
++ + L + + L +E L + L L+
Sbjct: 352 FRCELSVEKSTVL-----------QSELESCKELQELEPENKWCL---LTIILLMRALDP 397
Query: 329 LNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN 388
L + F+ L + + Y + S + + + L L
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLR--SKFLLENSVLKMEYADV----RVLHLAHK 451
Query: 389 FLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPT 448
L L + +L++ N++ L + + L L S N L+ ++ N+P
Sbjct: 452 DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--VANLPR 509
Query: 449 LLHLNLSRNAHLSSLP-VGGFDPLKKLEVLDLAATGLKSIPQYQ---FDELLNLKYL 501
L L L N L + +L +L+L L Q + L ++ +
Sbjct: 510 LQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
Score = 63.2 bits (153), Expect = 2e-10
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Query: 206 NPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP 265
+ L+ + LDLS N+++A+ L L L+ N ++ +
Sbjct: 451 KDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD--GVANL 507
Query: 266 RALRILSMAYNRIGTLKADSFLSQ-RWLERIILRGNRLTTIEG 307
L+ L + NR+ A L L + L+GN L EG
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550
Score = 57.8 bits (139), Expect = 8e-09
Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 6/143 (4%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
+ +R A S + ++ ++R+L L+ + + L+ + L +
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDL 470
Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEG-G 308
HNR ++P +L R L +L + N + + + L + L+ ++L NRL
Sbjct: 471 SHNRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPR--LQELLLCNNRLQQSAAIQ 527
Query: 309 AFNGLAKIHILNLGYNRLNKLNS 331
++ +LNL N L +
Sbjct: 528 PLVSCPRLVLLNLQGNSLCQEEG 550
Score = 54.4 bits (130), Expect = 8e-08
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+ LD S N LR L L + L+ L+ +DN + + L L+ L L
Sbjct: 465 VTHLDLSHNRLRALPPALAALRC--LEVLQASDN-------ALENVDGVANLPRLQELLL 515
Query: 226 SDNQIKAIEE-GILKGCDNLLELRMDHNRFTSIPS 259
+N+++ L C L+ L + N
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550
Score = 44.4 bits (104), Expect = 1e-04
Identities = 31/213 (14%), Positives = 59/213 (27%), Gaps = 28/213 (13%)
Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL 543
+ L +L L +++ + L + S
Sbjct: 290 PDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT-D 348
Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
+ R +LS K T + + EL L P + + L
Sbjct: 349 EQLFRCELSVEKSTVL----------------QSELESCKELQELEPENKWCLLTI-ILL 391
Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRL--------RKLNLNNN 655
+ + KE + S L+ +D + + R L+L +
Sbjct: 392 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK 451
Query: 656 NIDAISETCFFNSSQLQIINLSFNRLEKLPERL 688
++ + + ++LS NRL LP L
Sbjct: 452 DLTVLCHLEQL--LLVTHLDLSHNRLRALPPAL 482
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 79.4 bits (195), Expect = 4e-16
Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 8/105 (7%)
Query: 483 GLKSIPQYQFDELLNLKYLCLAHN-HLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLY 541
G NL L + + HL + + L L L + + + + + +
Sbjct: 19 GALDSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH 77
Query: 542 GLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELT 586
P + RL+LSFN L + SL+EL L+ N L
Sbjct: 78 FTPRLSRLNLSFNALESLSWKTV------QGLSLQELVLSGNPLH 116
Score = 75.5 bits (185), Expect = 8e-15
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 2/105 (1%)
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
+ L + + + L L + HL L + L +L L + +GL+
Sbjct: 11 SGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
+ F L L L+ N L + + L+L L LS N
Sbjct: 70 FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGN 113
Score = 69.4 bits (169), Expect = 8e-13
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 617 ILGLSYLQEIDLSNNQ-LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIIN 675
+ G L E+ + N Q L+ ++ D L LR L + + + ++ F + +L +N
Sbjct: 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86
Query: 676 LSFNRLEKLPERLF 689
LSFN LE L +
Sbjct: 87 LSFNALESLSWKTV 100
Score = 66.3 bits (161), Expect = 9e-12
Identities = 24/114 (21%), Positives = 33/114 (28%), Gaps = 24/114 (21%)
Query: 367 HITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLL 425
+ + L L + + L L L
Sbjct: 20 ALDSLHHLPGAENLTELYIENQ---------------------QHLQHLELRDLRGLGEL 58
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
L + + L+ + P AF P L LNLS N L SL L L+ L L
Sbjct: 59 RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGL-SLQELVL 110
Score = 65.5 bits (159), Expect = 2e-11
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 8/117 (6%)
Query: 241 CDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR-IGTLKADSFLSQRWLERIILRG 299
LR + L G L L + + + L+ L + +
Sbjct: 7 PHGSSGLRCTRDGALDSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65
Query: 300 NRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
+ L + AF+ ++ LNL +N L L+ T QG + L L N L+
Sbjct: 66 SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG------LSLQELVLSGNPLH 116
Score = 64.8 bits (157), Expect = 3e-11
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 590 PSSFTIHSKLKTLKLAFNK-FNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLR 648
L L + + + + GL L+ + + + L+ + + + PRL
Sbjct: 24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83
Query: 649 KLNLNNNNIDAISETCFFNSSQLQIINLSFNRL 681
+LNL+ N ++++S S LQ + LS N L
Sbjct: 84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115
Score = 59.8 bits (144), Expect = 9e-10
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 570 PNTSSLEELNL-NNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDL 628
P +L EL + N L +L +L+ L + + + + L ++L
Sbjct: 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87
Query: 629 SNNQLKTIDDYDYGYLPRLRKLNLNNN 655
S N L+++ L L++L L+ N
Sbjct: 88 SFNALESLSWKTVQGLS-LQELVLSGN 113
Score = 56.7 bits (136), Expect = 1e-08
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 14/112 (12%)
Query: 174 NALRRLSDKLFS-----PHRDTLQELRLADNLFGDSLNPI--FSTSEFHGLVNLRILDLS 226
+ LR D P + L EL + + + + GL LR L +
Sbjct: 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQ------QHLQHLELRDLRGLGELRNLTIV 64
Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
+ ++ + L L + N S+ ++ G L+ L ++ N +
Sbjct: 65 KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115
Score = 48.6 bits (115), Expect = 4e-06
Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 37/127 (29%)
Query: 309 AFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHI 368
G + L + + + + GL ++ L + + L + D F T
Sbjct: 26 HLPGAENLTELYIENQQ----HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP- 80
Query: 369 TIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKL 428
+L L+L+ N + +LS + L +L
Sbjct: 81 ----------RLSRLNLSF----------------------NALESLSWKTVQGLSLQEL 108
Query: 429 DLSHNNL 435
LS N L
Sbjct: 109 VLSGNPL 115
Score = 40.9 bits (95), Expect = 0.001
Identities = 6/49 (12%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 643 YLPRLRKLNLNNNN-IDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
L +L + N + + +L+ + + + L + F+
Sbjct: 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH 77
Score = 35.9 bits (82), Expect = 0.043
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 31/89 (34%)
Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
R L + LR + D FH L L+LS
Sbjct: 59 RNLTIVKSGLRFV-------APDA-----------------------FHFTPRLSRLNLS 88
Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFT 255
N ++++ ++G +L EL + N
Sbjct: 89 FNALESLSWKTVQGL-SLQELVLSGNPLH 116
Score = 30.1 bits (67), Expect = 2.7
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADN 199
+ RL+ S NAL LS K +LQEL L+ N
Sbjct: 82 LSRLNLSFNALESLSWKTVQG--LSLQELVLSGN 113
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 78.6 bits (194), Expect = 1e-15
Identities = 48/330 (14%), Positives = 96/330 (29%), Gaps = 68/330 (20%)
Query: 401 TLDNLNVRDNQIT-----TLSSSALNYKLLTKLDLSHNNL-----KELEPTAFTNVPTLL 450
+++ +++ + IT ++ + L + ++ LS N + + L + L
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLS-ENIASKKDLE 63
Query: 451 HLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
S + + L+ L L P L + L+ N
Sbjct: 64 IAEFSDI-FTGRVKDEIPEALRLL------LQALLKCP--------KLHTVRLSDNAFGP 108
Query: 511 IPEMMFKNLL----NLTYLDLSNNNI-------------VNLRVGSLYGLPSMKRLDLSF 553
+ + L L +L L NN + P ++ +
Sbjct: 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168
Query: 554 NKLTTFKGDYFNTKSKPNTSSLEELNLNNNELT-----YLFPSSFTIHSKLKTLKLAFNK 608
N+L + + + L + + N + +L +LK L L N
Sbjct: 169 NRLENGSMKEWAKTFQSHRL-LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227
Query: 609 FNYFPK------ELILGLSYLQEIDLSNNQLKTI------DDYDYGYLPRLRKLNLNNNN 656
F + L+E+ L++ L D + L+ L L N
Sbjct: 228 FT--HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285
Query: 657 ID-----AISETCFFNSSQLQIINLSFNRL 681
I+ + L + L+ NR
Sbjct: 286 IELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
Score = 71.7 bits (176), Expect = 2e-13
Identities = 45/295 (15%), Positives = 84/295 (28%), Gaps = 65/295 (22%)
Query: 345 IHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED---- 400
+ + L N + + + + L+ + + F ++ E
Sbjct: 34 VKEIVLSGNTIGT------EAA-RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 86
Query: 401 --------TLDNLNVRDNQITTLSSSAL-----NYKLLTKLDLSHNNL------------ 435
L + + DN + L + L L L +N L
Sbjct: 87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL 146
Query: 436 -KELEPTAFTNVPTLLHLNLSRN-------AHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
+ N P L + RN + F + L + + G++
Sbjct: 147 QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK----TFQSHRLLHTVKMVQNGIRPE 202
Query: 488 -PQYQFDELL----NLKYLCLAHNHLTE-----IPEMMFKNLLNLTYLDLSNNNIVN--- 534
++ E L LK L L N T + + K+ NL L L++ +
Sbjct: 203 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL-KSWPNLRELGLNDCLLSARGA 261
Query: 535 ---LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELT 586
+ S ++ L L +N++ T L L LN N +
Sbjct: 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
Score = 65.9 bits (161), Expect = 2e-11
Identities = 69/413 (16%), Positives = 131/413 (31%), Gaps = 106/413 (25%)
Query: 156 MQIFSSSDIPIRRLDFSGNAL-----RRLSDKLFSPHRDTLQELRLADNLFGD----SLN 206
M FS I +A+ + + L D+++E+ L+ N G L+
Sbjct: 1 MARFS-----IEGKSLKLDAITTEDEKSVFAVLLED--DSVKEIVLSGNTIGTEAARWLS 53
Query: 207 PIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPR 266
++ + +L I + SD +++ I + LL+ +L
Sbjct: 54 ENIASKK-----DLEIAEFSDIFTGRVKDEIPEALRLLLQ--------------ALLKCP 94
Query: 267 ALRILSMAYNRIGTLKADSF----LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLG 322
L + ++ N G + LE + L N L + GA A +
Sbjct: 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNK 153
Query: 323 YNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKS 382
+ + + G NRL FQ + L +
Sbjct: 154 KAKNAP---------------PLRSIICGRNRL------ENGSM-KEWAKTFQSHRLLHT 191
Query: 383 LDLNGNFL-----INLESTGLED--TLDNLNVRDNQITTLSSSAL-----NYKLLTKLDL 430
+ + N + +L GL L L+++DN T L SSAL ++ L +L L
Sbjct: 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251
Query: 431 SHNNLKELEPTAFTNV------PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
+ L A + L L L N ++ +
Sbjct: 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN--------------------EIELDAV 291
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTE----IPEM--MFKNLLNLTYLDLSNNN 531
+++ +++ +L +L L N +E + E+ +F +L +
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDME 344
Score = 65.1 bits (159), Expect = 2e-11
Identities = 46/324 (14%), Positives = 95/324 (29%), Gaps = 69/324 (21%)
Query: 266 RALRILSMAYNRIG----TLKADSFLSQRWLERIILRGNRLTTIEGG-----AFNGLAKI 316
++ S+ + I L ++ I+L GN + E +
Sbjct: 4 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIG-TEAARWLSENIASKKDL 62
Query: 317 HILNLGYNRLNKLNSDTFQGG-----AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIF 371
I ++ + + A K+H + L N + +
Sbjct: 63 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN---AFGPTAQEP----LI 115
Query: 372 SFFQDFQKLKSLDLNGN---------------FLINLESTGLEDTLDNLNVRDNQITTLS 416
F L+ L L+ N L + L ++ N++ S
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175
Query: 417 SSAL-----NYKLLTKLDLSHNNL-----KELEPTAFTNVPTLLHLNLSRN-------AH 459
+++LL + + N + + L L L+L N +
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235
Query: 460 LSSLPVGGFDPLKKLEVLDLA-----ATGLKSIPQY-QFDELLNLKYLCLAHNHLTE--- 510
L+ L L L A G ++ E + L+ L L +N +
Sbjct: 236 LAI----ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291
Query: 511 --IPEMMFKNLLNLTYLDLSNNNI 532
+ ++ + + +L +L+L+ N
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRF 315
Score = 45.1 bits (107), Expect = 6e-05
Identities = 28/172 (16%), Positives = 50/172 (29%), Gaps = 38/172 (22%)
Query: 545 SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELT----YLFPSSFTIHSKLK 600
S++ L + +TT + S ++E+ L+ N + + L+
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDS-VKEIVLSGNTIGTEAARWLSENIASKKDLE 63
Query: 601 TLKLAFNKFNYFPKELILGLSY----------LQEIDLSNNQLKTIDDYDYGYL------ 644
+ + E+ L L + LS+N L
Sbjct: 64 IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA---FGPTAQEPLIDFLSK 120
Query: 645 -PRLRKLNLNNNNI-------------DAISETCFFNSSQLQIINLSFNRLE 682
L L L+NN + + N+ L+ I NRLE
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172
Score = 35.8 bits (83), Expect = 0.043
Identities = 20/135 (14%), Positives = 43/135 (31%), Gaps = 28/135 (20%)
Query: 572 TSSLEELNLNNNELT----YLFPSSFTIHSKLKTLKLAFNKFNYFPK------ELILGLS 621
S+E +L + +T + +K + L+ N + E I
Sbjct: 3 RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIG--TEAARWLSENIASKK 60
Query: 622 YLQEIDLSNNQLKTIDDYDY----------GYLPRLRKLNLNNNNI-----DAISETCFF 666
L+ + S+ + D P+L + L++N + + +
Sbjct: 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID-FLS 119
Query: 667 NSSQLQIINLSFNRL 681
+ L+ + L N L
Sbjct: 120 KHTPLEHLYLHNNGL 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 72.4 bits (178), Expect = 6e-15
Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 7/135 (5%)
Query: 428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
+ L+ +++ +TN L+L + L + + +D + ++ +
Sbjct: 2 VKLTAELIEQAA--QYTNAVRDRELDLRGY--KIPVIENLGATLDQFDAIDFSDNEIRKL 57
Query: 488 PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR-VGSLYGLPSM 546
F L LK L + +N + I E + + L +LT L L+NN++V L + L L S+
Sbjct: 58 DG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115
Query: 547 KRLDLSFNKLTTFKG 561
L + N +T K
Sbjct: 116 TYLCILRNPVTNKKH 130
Score = 60.1 bits (146), Expect = 1e-10
Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 29/157 (18%)
Query: 374 FQDFQKLKSLDLNGNFLINLESTGLE-DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSH 432
+ + + + LDL G + +E+ G D D ++ DN+I L L +L L +++
Sbjct: 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRL-KTLLVNN 73
Query: 433 NNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQF 492
N + + +P L L L+ N L L G DPL L+
Sbjct: 74 NRICRIGEGLDQALPDLTELILTNN-SLVEL--GDLDPLASLK----------------- 113
Query: 493 DELLNLKYLCLAHNHLTEIP---EMMFKNLLNLTYLD 526
+L YLC+ N +T + + + LD
Sbjct: 114 ----SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
Score = 57.0 bits (138), Expect = 1e-09
Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 9/132 (6%)
Query: 222 ILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTL 281
++ L+ I+ + EL + + I ++ + + + N I L
Sbjct: 1 MVKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENLGATLDQ-FDAIDFSDNEIRKL 57
Query: 282 KADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG 341
D F R L+ +++ NR+ I G L + L L N L +L
Sbjct: 58 --DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP----LAS 111
Query: 342 LAKIHILNLGYN 353
L + L + N
Sbjct: 112 LKSLTYLCILRN 123
Score = 56.2 bits (136), Expect = 2e-09
Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 9/123 (7%)
Query: 571 NTSSLEELNLNNNELTYL--FPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDL 628
N EL+L ++ + ++ + + + N+ + L L+ + +
Sbjct: 17 NAVRDRELDLRGYKIPVIENLGATLD---QFDAIDFSDNEIRKL--DGFPLLRRLKTLLV 71
Query: 629 SNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE-TCFFNSSQLQIINLSFNRLEKLPE- 686
+NN++ I + LP L +L L NN++ + + + L + + N +
Sbjct: 72 NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 131
Query: 687 RLF 689
RL+
Sbjct: 132 RLY 134
Score = 55.8 bits (135), Expect = 3e-09
Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 4/122 (3%)
Query: 204 SLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLN 263
+ I +++ V R LDL +I I E + D + N + L
Sbjct: 5 TAELIEQAAQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGFPLL 63
Query: 264 GPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEG-GAFNGLAKIHILNLG 322
R L+ L + NRI + + L +IL N L + L + L +
Sbjct: 64 --RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121
Query: 323 YN 324
N
Sbjct: 122 RN 123
Score = 53.5 bits (129), Expect = 2e-08
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 10/114 (8%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
R LD G + + + D + +DN I F L L+ L +
Sbjct: 21 DRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNE-------IRKLDGFPLLRRLKTLLV 71
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS-LNGPRALRILSMAYNRI 278
++N+I I EG+ + +L EL + +N + + L ++L L + N +
Sbjct: 72 NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125
Score = 44.3 bits (105), Expect = 3e-05
Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 150 GHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIF 209
G++I ++ ++ +DFS N +R+L P L+ L + +N +
Sbjct: 28 GYKIPVIENLGATLDQFDAIDFSDNEIRKLDG---FPLLRRLKTLLVNNNRICRIGEGL- 83
Query: 210 STSEFHGLVNLRILDLSDNQIKAIEE-GILKGCDNLLELRMDHNRFTSIP 258
L +L L L++N + + + L +L L + N T+
Sbjct: 84 ----DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129
Score = 40.0 bits (94), Expect = 7e-04
Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 43/162 (26%)
Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
L + + + L+L ++ + L + ++ N +
Sbjct: 4 LTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE------NLGATLDQFDAIDFSDNEIR 55
Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
KL F ++LK+L +N N + + GL+ L +
Sbjct: 56 KL-------------DGFPLLRRLKTLLVNNNRICRIGE-GLDQALPD------------ 89
Query: 417 SSALNYKLLTKLDLSHNNLKELEP-TAFTNVPTLLHLNLSRN 457
LT+L L++N+L EL ++ +L +L + RN
Sbjct: 90 --------LTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 71.9 bits (177), Expect = 7e-15
Identities = 35/88 (39%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 444 TNVPT-LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLC 502
T +PT L L N ++ L G FD L +L LDL L +P FD+L L L
Sbjct: 26 TGIPTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84
Query: 503 LAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
L N L IP F NL +LT++ L NN
Sbjct: 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 56.5 bits (137), Expect = 2e-09
Identities = 38/113 (33%), Positives = 50/113 (44%), Gaps = 28/113 (24%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLLHLN 453
TG+ T L + DNQIT L + +L LT+LDL +N L
Sbjct: 26 TGIPTTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDNNQLT----------------- 67
Query: 454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
LP G FD L +L L L LKSIP+ FD L +L ++ L +N
Sbjct: 68 --------VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 48.4 bits (116), Expect = 1e-06
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
++ + L L +N++T L P F ++L L L N+ P + L+ L ++ L++NQ
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 633 LKTIDDYDYGYLPRLRKLNLNNN 655
LK+I + L L + L NN
Sbjct: 90 LKSIPRGAFDNLKSLTHIWLLNN 112
Score = 47.6 bits (114), Expect = 2e-06
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
+ L L N +T++ +F L LT LDL NN + L G L + +L L+ N+L
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 557 TTFKGDYFNTKSKP-----NTSSLEELNLNNN 583
KS P N SL + L NN
Sbjct: 91 ----------KSIPRGAFDNLKSLTHIWLLNN 112
Score = 41.1 bits (97), Expect = 3e-04
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
T Q L L DN L P F L L LDL +NQ+ + G+ L +L +
Sbjct: 31 TTQVLYLYDNQI-TKLEP----GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85
Query: 250 DHNRFTSIP 258
+ N+ SIP
Sbjct: 86 NDNQLKSIP 94
Score = 40.7 bits (96), Expect = 4e-04
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 252 NRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFN 311
S+P+ P ++L + N+I L+ F L R+ L N+LT + G F+
Sbjct: 19 KSLASVPT---GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75
Query: 312 GLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI-HI 347
L ++ L+L N+L + GAF+ L + HI
Sbjct: 76 KLTQLTQLSLNDNQLKSIPR-----GAFDNLKSLTHI 107
Score = 40.3 bits (95), Expect = 6e-04
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 572 TSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN 631
+ S ++ + L + P+ I + + L L N+ + L+ L +DL NN
Sbjct: 8 SCSGTTVDCSGKSLASV-PTG--IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN 64
Query: 632 QLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679
QL + + L +L +L+LN+N + +I F N L I L N
Sbjct: 65 QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 39.5 bits (93), Expect = 0.001
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 624 QEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEK 683
Q + L +NQ+ ++ + L +L +L+L+NN + + F +QL ++L+ N+L+
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 684 LPERLFNT-------FLYTN 696
+P F+ +L N
Sbjct: 93 IPRGAFDNLKSLTHIWLLNN 112
Score = 37.2 bits (87), Expect = 0.006
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 25/102 (24%)
Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
++L L DNQI +E G+ L L +D+N+ T +P+ G +++
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA----G---------VFDK 76
Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKI-HI 318
+ L ++ L N+L +I GAF+ L + HI
Sbjct: 77 LTQLT-----------QLSLNDNQLKSIPRGAFDNLKSLTHI 107
Score = 33.7 bits (78), Expect = 0.095
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 624 QEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEK 683
+D S L ++ G + L L +N I + F +QL ++L N+L
Sbjct: 12 TTVDCSGKSLASVPT---GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 684 LPERLFN 690
LP +F+
Sbjct: 69 LPAGVFD 75
Score = 33.0 bits (76), Expect = 0.15
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 162 SDIPI--RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
+ IP + L N + +L +F L L L +N L F L
Sbjct: 26 TGIPTTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDNNQL-TVLPA----GVFDKLTQ 79
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLEL 247
L L L+DNQ+K+I G DNL L
Sbjct: 80 LTQLSLNDNQLKSIPRGAF---DNLKSL 104
Score = 32.6 bits (75), Expect = 0.25
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 16/73 (21%)
Query: 318 ILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDF 377
+L L N++ KL G F+ L ++ L+L N+L L + F +T
Sbjct: 34 VLYLYDNQITKLEP-----GVFDRLTQLTRLDLDNNQLTVLPAGVFD--KLT-------- 78
Query: 378 QKLKSLDLNGNFL 390
+L L LN N L
Sbjct: 79 -QLTQLSLNDNQL 90
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 71.1 bits (175), Expect = 1e-14
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 444 TNVPT-LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLC 502
+PT L L+ N ++ L G FD L L+ L + L +IP FD+L L L
Sbjct: 29 AGIPTDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87
Query: 503 LAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
L NHL IP F NL +LT++ L NN
Sbjct: 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 56.5 bits (137), Expect = 2e-09
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 28/113 (24%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLLHLN 453
G+ L + +NQIT L + L L +L + N L
Sbjct: 29 AGIPTDKQRLWLNNNQITKLEPGVFD-HLVNLQQLYFNSNKLT----------------- 70
Query: 454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
++P G FD L +L LDL LKSIP+ FD L +L ++ L +N
Sbjct: 71 --------AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 46.9 bits (112), Expect = 4e-06
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
+ + L LNNN++T L P F L+ L NK P + L+ L ++DL++N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 633 LKTIDDYDYGYLPRLRKLNLNNN 655
LK+I + L L + L NN
Sbjct: 93 LKSIPRGAFDNLKSLTHIYLYNN 115
Score = 46.5 bits (111), Expect = 4e-06
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
+ + L L +N +T++ +F +L+NL L ++N + + G L + +LDL+ N L
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
Query: 557 TTFKGDYFNTKSKP-----NTSSLEELNLNNN 583
KS P N SL + L NN
Sbjct: 94 ----------KSIPRGAFDNLKSLTHIYLYNN 115
Score = 40.7 bits (96), Expect = 5e-04
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 252 NRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFN 311
R S+P+ P + L + N+I L+ F L+++ N+LT I G F+
Sbjct: 22 IRLASVPA---GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78
Query: 312 GLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI-HI 347
L ++ L+L N L + GAF+ L + HI
Sbjct: 79 KLTQLTQLDLNDNHLKSIPR-----GAFDNLKSLTHI 110
Score = 39.9 bits (94), Expect = 8e-04
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
Q L L +N L P F LVNL+ L + N++ AI G+ L +L +
Sbjct: 34 DKQRLWLNNNQI-TKLEP----GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88
Query: 250 DHNRFTSIP 258
+ N SIP
Sbjct: 89 NDNHLKSIP 97
Score = 39.5 bits (93), Expect = 0.001
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 624 QEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEK 683
Q + L+NNQ+ ++ + +L L++L N+N + AI F +QL ++L+ N L+
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 684 LPERLFNT-------FLYTN 696
+P F+ +LY N
Sbjct: 96 IPRGAFDNLKSLTHIYLYNN 115
Score = 37.2 bits (87), Expect = 0.006
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 25/102 (24%)
Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
+ + L L++NQI +E G+ NL +L + N+ T+IP+
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT------------------ 74
Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKI-HI 318
G D L+Q L ++ L N L +I GAF+ L + HI
Sbjct: 75 -GVF--DK-LTQ--LTQLDLNDNHLKSIPRGAFDNLKSLTHI 110
Score = 33.8 bits (78), Expect = 0.095
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 162 SDIPI--RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
+ IP +RL + N + +L +F H LQ+L N ++ F L
Sbjct: 29 AGIPTDKQRLWLNNNQITKLEPGVFD-HLVNLQQLYFNSNKL-TAIPT----GVFDKLTQ 82
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLEL 247
L LDL+DN +K+I G DNL L
Sbjct: 83 LTQLDLNDNHLKSIPRGAF---DNLKSL 107
Score = 31.5 bits (72), Expect = 0.51
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 16/73 (21%)
Query: 318 ILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDF 377
L L N++ KL G F+ L + L N+L + + F +T
Sbjct: 37 RLWLNNNQITKLEP-----GVFDHLVNLQQLYFNSNKLTAIPTGVFD--KLT-------- 81
Query: 378 QKLKSLDLNGNFL 390
+L LDLN N L
Sbjct: 82 -QLTQLDLNDNHL 93
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 75.7 bits (185), Expect = 3e-14
Identities = 97/595 (16%), Positives = 174/595 (29%), Gaps = 151/595 (25%)
Query: 203 DSLNPIFSTSEFHGLVN--------LRILDL----SDNQIKAIEEGILKGCDN---LLE- 246
D I S E ++ LR+ + ++ E +L+ N L+
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR--INYKFLMSP 97
Query: 247 LR-------MDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRG 299
++ M + N + ++ +R+ L ++ L LR
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLK---L-RQALLE--LRP 149
Query: 300 NRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGY------- 352
+ I+G G K + L + S Q + KI LNL
Sbjct: 150 AKNVLIDGVL--GSGK-TWVAL-----DVCLSYKVQC-KMDF--KIFWLNLKNCNSPETV 198
Query: 353 -NRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNL-NVRDN 410
L KL ++ S+ L L+S E+ L L NV++
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKSKPYENCLLVLLNVQNA 256
Query: 411 Q------------ITTLSSSALNYKLLTKLDLSHNNLKELEPTAFT--NVPTLLHLNLSR 456
+ +TT ++ L+ +H +L T T V +LL L
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDF--LSAATTTHISLDHHSMT-LTPDEVKSLLLKYL-- 311
Query: 457 NAHLSSLP--VGGFDPLKKLEVLDLAATGLKSIP-------QYQFDELLNLKYLCLAHNH 507
+ LP V +P L + A ++ D+L + L N
Sbjct: 312 DCRPQDLPREVLTTNPR----RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--NV 365
Query: 508 LTEIPEMMFKNLLNLTYLDLS----NNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDY 563
L E + + + LS + +I P+ L L + +
Sbjct: 366 LEP-AEY--RKM----FDRLSVFPPSAHI-----------PT-ILLSLIWFDVIKSDVMV 406
Query: 564 FNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYL 623
K SL + E T +I S LK+ + ++ +
Sbjct: 407 VVNKLH--KYSL--VEKQPKESTI------SIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 624 QEIDLSNNQLKTIDDYDYGYLPR-------------LRKLNLNNNNIDA-ISETCFFNSS 669
+ D + +D Y Y ++ R + L+ ++ I ++
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 670 QLQIINLSFNRLEK----------LPERLFNTFLYTNYDMAPNLVFQSHLSGHRC 714
I+N +L+ ERL N L D P + S +
Sbjct: 517 SGSILNT-LQQLKFYKPYICDNDPKYERLVNAIL----DFLPKIEENLICSKYTD 566
Score = 74.5 bits (182), Expect = 7e-14
Identities = 110/631 (17%), Positives = 194/631 (30%), Gaps = 175/631 (27%)
Query: 98 DTMIDDFPYPCRCKKMSESQLAM----DCDN-VAFPNGEYPT-------LPYGLNLVTFS 145
D +D+F CK + + ++ + D+ + + T L +V
Sbjct: 27 DAFVDNFD----CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV--- 79
Query: 146 QRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLS--DKL------FSPH---------- 187
Q++V + F S I + S + D+L F+ +
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 188 -RDTLQELRLADNLFGDSLNPIFSTSEFHG--------LV-----NLRILDLSDNQI--- 230
R L ELR A N+ G + + ++ D +I
Sbjct: 140 LRQALLELRPAKNVL------------IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 231 ----KAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSF 286
E +L+ LL ++D N +TS S N + + R
Sbjct: 188 NLKNCNSPETVLEMLQKLL-YQIDPN-WTSRSDHSSNIKLRIHSIQAELRR--------L 237
Query: 287 LSQRWLER--IILRG-NRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLA 343
L + E ++L AFN KI + R K +D +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWN--AFNLSCKILLTT----R-FKQVTD-----FLSAAT 285
Query: 344 KIHILNLGYNRLNKLNSDTFQGTH---ITIFSFF--QDFQKLKSLDLNGN-FLINLESTG 397
HI L+ +S T T ++ + Q L L N +++ +
Sbjct: 286 TTHI------SLDH-HSMTL--TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 398 LED---TLDN-LNVRDNQITTLSSSALN----------YKLLTKLDLSHN---------- 433
+ D T DN +V +++TT+ S+LN + L+ S +
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 434 -NLKELEPTAFTNVPTLLH----LNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP 488
++ + + N LH + S+P + KLE + A +
Sbjct: 397 FDVIKSDVMVVVN---KLHKYSLVEKQPKESTISIPSIYLELKVKLE--NEYALHRSIVD 451
Query: 489 QYQF------DELLNL---KYLC--LAHNHLTEIPEMMFKNLLNLTYLDLS--NNNIVNL 535
Y D+L+ +Y + H HL I L + +LD I +
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGH-HLKNIEHPERMTLFRMVFLDFRFLEQKIRH- 509
Query: 536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLF-PSSFT 594
+ + L+ +L +K Y + P L N L +L
Sbjct: 510 -DSTAWNASG-SILNT-LQQLKFYK-PYI-CDNDPKYERLV-----NAILDFLPKIEENL 559
Query: 595 IHSK-LKTLKLAFNKFNYFPKELILGLSYLQ 624
I SK L++A E I ++ Q
Sbjct: 560 ICSKYTDLLRIALM----AEDEAIFEEAHKQ 586
Score = 42.5 bits (99), Expect = 5e-04
Identities = 53/370 (14%), Positives = 112/370 (30%), Gaps = 121/370 (32%)
Query: 1 MRRLFDSIVHLSILLVSIVQVSSEPCDTMIDDFPYPCR-------------CKKMSESQL 47
+RRL S + + LLV ++ V + + F C+ + + +
Sbjct: 234 LRRLLKSKPYENCLLV-LLNVQNA---KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 48 AMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQI--LPMQ----------IFSSSVSSE 95
++D ++ T +L +++ + LP + I + S+
Sbjct: 290 SLDHHSMTL------TPDEVKSL--LL-KYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 96 PCDTMIDDFPYPCRCKKMSES-QLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQIL 154
D++ + C K++ + +++ L + + + +
Sbjct: 341 LA--TWDNWKHV-NCDKLTTIIESSLNV----------------LEPAEYRKMFDRLSVF 381
Query: 155 PMQIFSSSDIPIRRL-----DFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIF 209
P S+ IP L D + + + +KL H+ +L E + +
Sbjct: 382 P----PSAHIPTILLSLIWFDVIKSDVMVVVNKL---HKYSLVEKQPKE----------- 423
Query: 210 STSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDH----NRFTSIPSVSLNGP 265
ST + L+L +N L H + + + +
Sbjct: 424 STISIPSI----YLEL------------KVKLENEYAL---HRSIVDHYNIPKTFDSDDL 464
Query: 266 RALRILSMAYNRIG--------TLKADSF----LSQRWLERIILRGNRLTTIEGGAFNGL 313
+ Y+ IG + F L R+LE+ I + G N L
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 314 A-----KIHI 318
K +I
Sbjct: 525 QQLKFYKPYI 534
Score = 31.7 bits (71), Expect = 1.1
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 625 EIDLSNNQL------KTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSF 678
E + +D++D + + K L+ ID I + S L++
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 679 NRLEKLPERLFNTFLYTNYD 698
++ E++ ++ L NY
Sbjct: 73 SKQEEMVQKFVEEVLRINYK 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 73.6 bits (181), Expect = 4e-14
Identities = 56/293 (19%), Positives = 99/293 (33%), Gaps = 56/293 (19%)
Query: 425 LTKLDLSHNNL-----KELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
+T LDLS NNL EL ++ LNLS N SL D L
Sbjct: 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN----SLGFKNSDEL-------- 71
Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTE-----IPEMMFKNLLNLTYLDLSNNNIVN 534
L +IP N+ L L+ N L+ + + + +T LDL N+ +
Sbjct: 72 -VQILAAIPA-------NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123
Query: 535 LRVGSLYGL-----PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELT--- 586
S+ L+L N L D +++ LNL N L
Sbjct: 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183
Query: 587 --YLFPSSFTIHSKLKTLKLAFNKFN-----YFPKELILGLSYLQEIDLSNNQLKTIDDY 639
L +I + + +L L+ N +++ ++L N L
Sbjct: 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243
Query: 640 DYGYL----PRLRKLNLNNNNIDAISETCFF-------NSSQLQIINLSFNRL 681
+ L L+ + L+ + + +S+ N ++ +++ + +
Sbjct: 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296
Score = 73.2 bits (180), Expect = 5e-14
Identities = 54/295 (18%), Positives = 101/295 (34%), Gaps = 57/295 (19%)
Query: 401 TLDNLNVRDNQITTLSSSAL------NYKLLTKLDLSHNNLKELEPTAFTNV-----PTL 449
+ +L++ N + ++S+ L +T L+LS N+L + +
Sbjct: 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82
Query: 450 LHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT 509
LNLS N L D L L +IP + L L N +
Sbjct: 83 TSLNLSGN----FLSYKSSDEL---------VKTLAAIP-------FTITVLDLGWNDFS 122
Query: 510 E-----IPEMMFKNLLNLTYLDLSNNNI----VNLRVGSLYGLP-SMKRLDLSFNKLTTF 559
+ ++T L+L N++ + + L +P ++ L+L N L +
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182
Query: 560 KGDYFNTKSKPNTSSLEELNLNNNELT-----YLFPSSFTIHSKLKTLKLAFNKFNYFP- 613
+S+ L+L+ N L L +I + + +L L N +
Sbjct: 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242
Query: 614 ---KELILGLSYLQEIDLSNNQLKTIDDYDYGYL-------PRLRKLNLNNNNID 658
K L L +LQ + L + +K + L ++ ++ N I
Sbjct: 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297
Score = 69.4 bits (170), Expect = 9e-13
Identities = 58/351 (16%), Positives = 109/351 (31%), Gaps = 80/351 (22%)
Query: 344 KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED--- 400
+ L+L N L T I +F + SL+L+GN +L ++
Sbjct: 23 GVTSLDLSLNNLYS------ISTVELIQAFANTPASVTSLNLSGN---SLGFKNSDELVQ 73
Query: 401 -------TLDNLNVRDNQITTLSSSAL------NYKLLTKLDLSHNNLKELEPTAFTNV- 446
+ +LN+ N ++ SS L +T LDL N+ + F
Sbjct: 74 ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133
Query: 447 ----PTLLHLNLSRN-------AHLSSLPVGGFDPLKKLEVLDLA------------ATG 483
++ LNL N L + L+L A
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQ---ILAAIPANVNSLNLRGNNLASKNCAELAKF 190
Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLT-----EIPEMMFKNLLNLTYLDLSNNNI----VN 534
L SIP ++ L L+ N L E+ + ++ L+L N + +
Sbjct: 191 LASIPA-------SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243
Query: 535 LRVGSLYGLPSMKRLDLSFNKLT--TFKGDYFNTKSKPNTSSLEELNLNNNELT-----Y 587
L ++ + L ++ + + + + PN + ++ N E+
Sbjct: 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303
Query: 588 LFPSSFTIHSKLKTLKLA-----FNKFNYFPKELILGLSYLQEIDLSNNQL 633
+ + K L F + + E + L+E + L
Sbjct: 304 ISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
Score = 67.8 bits (166), Expect = 3e-12
Identities = 44/309 (14%), Positives = 95/309 (30%), Gaps = 46/309 (14%)
Query: 166 IRRLDFSGNAL-----RRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNL 220
+ L+ SGN+L L L + + L L+ N + + +
Sbjct: 53 VTSLNLSGNSLGFKNSDELVQILAAIPA-NVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111
Query: 221 RILDLSDNQI-----KAIEEGILKGCDNLLELRMDHNRFTSIPSVSL-----NGPRALRI 270
+LDL N ++ ++ L + N S L P +
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171
Query: 271 LSMAYNRIGTLKADSFLS-----QRWLERIILRGNRLTTIEGGAFNGLA------KIHIL 319
L++ N + + + + L N L + A + L
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL-KSYAELAYIFSSIPNHVVSL 230
Query: 320 NLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQK 379
NL N L+ + + + L + + L Y+ + ++ + + + + F + QK
Sbjct: 231 NLCLNCLHGPSLENL-KLLKDSLKHLQTVYLDYDIVKNMSKEQCKA----LGAAFPNIQK 285
Query: 380 LKSLDLNGNFLINLESTGLED-------TLDNLNVRDNQITTLSSSALNYKL------LT 426
+ +D NG + S + + D ++ + + N + L
Sbjct: 286 IILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELR 345
Query: 427 KLDLSHNNL 435
+ + L
Sbjct: 346 ESIQTCKPL 354
Score = 64.0 bits (156), Expect = 5e-11
Identities = 70/398 (17%), Positives = 115/398 (28%), Gaps = 97/398 (24%)
Query: 219 NLRILDLSDNQI-----KAIEEGILKGCDNLLELRMDHNRFTS-----IPSVSLNGPRAL 268
+ LDLS N + + + ++ L + N + + P +
Sbjct: 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82
Query: 269 RILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNK 328
L+++ N + +D + L T I +L+LG+N +
Sbjct: 83 TSLNLSGNFLSYKSSDELVK-------TLAAIPFT------------ITVLDLGWNDFSS 123
Query: 329 LNSDTFQGGAFNGLAKIHILNLGYNRLN----KLNSDTFQGTHITIFSFFQDFQKLKSLD 384
+S F+ N A I LNL N L + SL+
Sbjct: 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN----------VNSLN 173
Query: 385 LNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNL-----KELE 439
L GN L + L L ++ +T LDLS N L EL
Sbjct: 174 LRGNNLASKNCAELAKFLASIP----------------ASVTSLDLSANLLGLKSYAELA 217
Query: 440 PTAFTNVPTLLHLNLSRN-------AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQF 492
+ ++ LNL N +L L D LK L+ + L +K++ + Q
Sbjct: 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLL----KDSLKHLQTVYLDYDIVKNMSKEQC 273
Query: 493 DELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL-----PSMK 547
L F N+ + +D + I + L
Sbjct: 274 KALGA-----------------AFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKAD 316
Query: 548 RLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNEL 585
L L + N + L E L
Sbjct: 317 VPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
Score = 60.9 bits (148), Expect = 4e-10
Identities = 52/270 (19%), Positives = 96/270 (35%), Gaps = 55/270 (20%)
Query: 447 PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
+ L+LS N L + ++L + P ++ L L+ N
Sbjct: 22 HGVTSLDLSLNN------------LYSISTVELIQ-AFANTPA-------SVTSLNLSGN 61
Query: 507 HLTE-----IPEMMFKNLLNLTYLDLSNNNI----VNLRVGSLYGLP-SMKRLDLSFNKL 556
L + +++ N+T L+LS N + + V +L +P ++ LDL +N
Sbjct: 62 SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121
Query: 557 TTFKGDYFNTKSKPNTSSLEELNLNNNELT-----YLFPSSFTIHSKLKTLKLAFNKFN- 610
++ F +S+ LNL N+L L I + + +L L N
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181
Query: 611 ----YFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYL--------PRLRKLNLNNNNID 658
K L + + +DLS N + Y L + LNL N +
Sbjct: 182 KNCAELAKFLASIPASVTSLDLSANL---LGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238
Query: 659 AIS----ETCFFNSSQLQIINLSFNRLEKL 684
S + + LQ + L ++ ++ +
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 68.2 bits (167), Expect = 2e-13
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
Query: 445 NVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLA 504
+ L L G LE L L GL S+ +L LK L L+
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELS 79
Query: 505 HNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR-VGSLYGLPSMKRLDLSFNKLTTFKG 561
N + +M+ + L NLT+L+LS N + ++ + L L +K LDL ++T
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137
Score = 60.5 bits (147), Expect = 6e-11
Identities = 37/187 (19%), Positives = 58/187 (31%), Gaps = 51/187 (27%)
Query: 368 ITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTK 427
I + + ++ L L+ + + GL N L
Sbjct: 14 IHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVN--------------------LEF 53
Query: 428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
L L + L + L KL+ L+L+ +
Sbjct: 54 LSLINVGLISVS---------------------------NLPKLPKLKKLELSENRIFGG 86
Query: 488 PQYQFDELLNLKYLCLAHNHLTEIPEMM-FKNLLNLTYLDLSNNNIVNL---RVGSLYGL 543
++L NL +L L+ N L +I + K L L LDL N + NL R L
Sbjct: 87 LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146
Query: 544 PSMKRLD 550
P + LD
Sbjct: 147 PQLTYLD 153
Score = 59.8 bits (145), Expect = 1e-10
Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 12/143 (8%)
Query: 513 EMMFKNLLNLTYLDLSNNNIVNLRVGSLYG-LPSMKRLDLSFNKLTTFKGDYFNTKSKPN 571
E+ + + L L N + ++ L +++ L L L + P
Sbjct: 17 ELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-------LPK 69
Query: 572 TSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL-GLSYLQEIDLSN 630
L++L L+ N + L L L+ NK L L L+ +DL N
Sbjct: 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129
Query: 631 NQLKTIDDYDY---GYLPRLRKL 650
++ ++DY LP+L L
Sbjct: 130 CEVTNLNDYRESVFKLLPQLTYL 152
Score = 54.7 bits (132), Expect = 6e-09
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 571 NTSSLEELNLNNNELTYLFPSSFTIH-SKLKTLKLAFNKFNYFPKELILGLSYLQEIDLS 629
+++ EL L+N + T L+ L L + L L++++LS
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELS 79
Query: 630 NNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE-TCFFNSSQLQIINLSFNRLEKLPE 686
N++ D LP L LNL+ N + IS L+ ++L + L +
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137
Score = 53.2 bits (128), Expect = 2e-08
Identities = 47/190 (24%), Positives = 67/190 (35%), Gaps = 50/190 (26%)
Query: 344 KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLD 403
+ + N + +L D + I +F L+ L L LI++ + L
Sbjct: 15 HLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN------LP 68
Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
L L KL+LS N + +P L HLNLS N L +
Sbjct: 69 KL-----------------PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDI 110
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIP---EMMFKNLL 520
+PLKKLE LK L L + +T + E +FK L
Sbjct: 111 --STLEPLKKLE---------------------CLKSLDLFNCEVTNLNDYRESVFKLLP 147
Query: 521 NLTYLDLSNN 530
LTYLD +
Sbjct: 148 QLTYLDGYDR 157
Score = 49.4 bits (118), Expect = 4e-07
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 8/114 (7%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+R L + + L+ L L + + S S L L+ L+L
Sbjct: 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-------LISVSNLPKLPKLKKLEL 78
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS-LNGPRALRILSMAYNRI 278
S+N+I + + + NL L + N+ I ++ L L+ L + +
Sbjct: 79 SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132
Score = 42.0 bits (99), Expect = 2e-04
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 3/100 (3%)
Query: 233 IEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP-RALRILSMAYNRIGTLKADSFLSQRW 291
E + + EL +D+ + L L LS+ + ++ +
Sbjct: 15 HLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPK 72
Query: 292 LERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNS 331
L+++ L NR+ L + LNL N+L +++
Sbjct: 73 LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST 112
Score = 36.6 bits (85), Expect = 0.009
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 620 LSYLQEIDLSNNQLKTID-DYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSF 678
+ ++E+ L N + + L L+L N + ++S +L+ + LS
Sbjct: 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS--NLPKLPKLKKLELSE 80
Query: 679 NRLEKLPERLFNTF 692
NR+ + L
Sbjct: 81 NRIFGGLDMLAEKL 94
Score = 31.6 bits (72), Expect = 0.43
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+++L+ S N + D L L L L+ N D I + L L+ LDL
Sbjct: 73 LKKLELSENRIFGGLDMLA-EKLPNLTHLNLSGNKLKD----ISTLEPLKKLECLKSLDL 127
Query: 226 SDNQIKAIEE 235
+ ++ + +
Sbjct: 128 FNCEVTNLND 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 67.4 bits (165), Expect = 2e-13
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 450 LHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT 509
L L+ SR+ G D ++LE L GL SI +L LK L L+ N ++
Sbjct: 22 LVLDNSRSNEGKLE--GLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNRVS 77
Query: 510 EIPEMMFKNLLNLTYLDLSNNNIVNLR-VGSLYGLPSMKRLDLSFNKLTTFKG 561
E++ + NLT+L+LS N I +L + L L ++K LDL ++T
Sbjct: 78 GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130
Score = 58.5 bits (142), Expect = 2e-10
Identities = 45/158 (28%), Positives = 66/158 (41%), Gaps = 31/158 (19%)
Query: 375 QDFQKLKSLDLNGNFLINLESTGLEDTLDN---LNVRDNQITTLSSSALNYKLLTKLDLS 431
+ +K L L+ + + GL D + L+ + +T++++ KL KL+LS
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKL-KKLELS 72
Query: 432 HNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQ 491
N + P L HLNLS N + L +PLKKLE
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDL--STIEPLKKLE---------------- 113
Query: 492 FDELLNLKYLCLAHNHLTEIP---EMMFKNLLNLTYLD 526
NLK L L + +T + E +FK L LTYLD
Sbjct: 114 -----NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146
Score = 55.1 bits (133), Expect = 4e-09
Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 12/143 (8%)
Query: 513 EMMFKNLLNLTYLDLSNNNIVNLRV-GSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPN 571
E+ + ++ L L N+ ++ G ++ L LT+ P
Sbjct: 10 ELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-------LPK 62
Query: 572 TSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL-GLSYLQEIDLSN 630
+ L++L L++N ++ L L L+ NK L L L+ +DL N
Sbjct: 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122
Query: 631 NQLKTIDDYDY---GYLPRLRKL 650
++ ++DY LP+L L
Sbjct: 123 CEVTNLNDYRENVFKLLPQLTYL 145
Score = 52.4 bits (126), Expect = 3e-08
Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 571 NTSSLEELNLNNNELTYL-FPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLS 629
S ++EL L+N+ +L+ L + L+ L++++LS
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72
Query: 630 NNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE-TCFFNSSQLQIINLSFNRLEKLPE 686
+N++ + P L LNL+ N I +S L+ ++L + L +
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130
Score = 50.4 bits (121), Expect = 2e-07
Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 8/113 (7%)
Query: 165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILD 224
++ L + + + + L+ L + + S + L L+ L+
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-------LTSIANLPKLNKLKKLE 70
Query: 225 LSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS-LNGPRALRILSMAYN 276
LSDN++ E + + C NL L + N+ + ++ L L+ L +
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
Score = 46.2 bits (110), Expect = 4e-06
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 234 EEGILKGCDNLLELRMDHNRFTSIPSVSLNGP-RALRILSMAYNRIGTLKADSFLSQRWL 292
E + ++ EL +D++R L L LS + ++ + L
Sbjct: 9 LELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKL 66
Query: 293 ERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNS 331
+++ L NR++ + LNL N++ L++
Sbjct: 67 KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLST 105
Score = 38.5 bits (90), Expect = 0.002
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 620 LSYLQEIDLSNNQLKTIDDYDYG-YLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSF 678
S ++E+ L N++ L L+ N + +I+ ++L+ + LS
Sbjct: 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA--NLPKLNKLKKLELSD 73
Query: 679 NRLEKLPERLFNTF 692
NR+ E L
Sbjct: 74 NRVSGGLEVLAEKC 87
Score = 37.0 bits (86), Expect = 0.006
Identities = 28/151 (18%), Positives = 59/151 (39%), Gaps = 36/151 (23%)
Query: 292 LERIILRGNRLTTIEG-GAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNL 350
++ ++L +R + G + ++ L+ L + + L K+ L L
Sbjct: 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-------LPKLNKLKKLEL 71
Query: 351 GYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES----TGLEDTLDNLN 406
NR++ + L L+L+GN + +L + LE+ L +L+
Sbjct: 72 SDNRVSGGLEV-----------LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLEN-LKSLD 119
Query: 407 VRDNQITTLSSSALNYKL--------LTKLD 429
+ + ++T L+ +Y+ LT LD
Sbjct: 120 LFNCEVTNLN----DYRENVFKLLPQLTYLD 146
Score = 30.8 bits (70), Expect = 0.65
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+++L+ S N + + L L L L+ N D + + L NL+ LDL
Sbjct: 66 LKKLELSDNRVSGGLEVLAE-KCPNLTHLNLSGNKIKD----LSTIEPLKKLENLKSLDL 120
Query: 226 SDNQIKAIEE 235
+ ++ + +
Sbjct: 121 FNCEVTNLND 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 66.6 bits (163), Expect = 9e-13
Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 33/163 (20%)
Query: 398 LEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
E L+ I + ++ K L LS NN++++
Sbjct: 23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS------------------ 64
Query: 458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLN-LKYLCLAHNHLTEIPEMMF 516
++ L +L L +K I D + + L+ L +++N + +
Sbjct: 65 ---------SLSGMENLRILSLGRNLIKKIEN--LDAVADTLEELWISYNQIASLSG--I 111
Query: 517 KNLLNLTYLDLSNNNIVNLR-VGSLYGLPSMKRLDLSFNKLTT 558
+ L+NL L +SNN I N + L L ++ L L+ N L
Sbjct: 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154
Score = 60.1 bits (146), Expect = 2e-10
Identities = 40/215 (18%), Positives = 72/215 (33%), Gaps = 35/215 (16%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLS-RNAHLSSLPVGGFDPLKKLEVLDLAATG 483
+ K + ++ E + L + + LK + L L+
Sbjct: 1 MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMD-ATLSTLKACKHLALSTNN 59
Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL 543
++ I + NL+ L L N + +I E + L L +S N I +L + L
Sbjct: 60 IEKISS--LSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS--GIEKL 114
Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
+++ L +S NK+T + +++L + L+ L
Sbjct: 115 VNLRVLYMSNNKITNWG-------------EIDKLAALDK---------------LEDLL 146
Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDD 638
LA N KE Y E+ LK +D
Sbjct: 147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181
Score = 58.5 bits (142), Expect = 6e-10
Identities = 37/205 (18%), Positives = 65/205 (31%), Gaps = 40/205 (19%)
Query: 506 NHLTEIPEMMFKNLLNLTYLDLSN--NNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDY 563
+ + E ++L I + +L L + K L LS N +
Sbjct: 9 DAIRIFEERKSVVATEAEKVELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKISS-- 65
Query: 564 FNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYL 623
+L L+L N + + L + L
Sbjct: 66 -----LSGMENLRILSLGRNLIKKI--------ENLDAV-----------------ADTL 95
Query: 624 QEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE-TCFFNSSQLQIINLSFNRLE 682
+E+ +S NQ+ ++ + L LR L ++NN I E +L+ + L+ N L
Sbjct: 96 EELWISYNQIASLSGIEK--LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153
Query: 683 KLPERLFNTFLYTNYDMA--PNLVF 705
+ T Y + PNL
Sbjct: 154 NDYKENNATSEYRIEVVKRLPNLKK 178
Score = 57.4 bits (139), Expect = 1e-09
Identities = 33/201 (16%), Positives = 59/201 (29%), Gaps = 43/201 (21%)
Query: 340 NGLAKIHILNLGYNRLNKLNSDTFQGTHIT-IFSFFQDFQKLKSLDLNGNFLINLESTGL 398
+ + + I + + + K L L+ N + + L
Sbjct: 9 DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SL 66
Query: 399 ED--TLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSR 456
L L++ N I + + L +L +S+N + L
Sbjct: 67 SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS----------------- 109
Query: 457 NAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQ-YQFDELLNLKYLCLAHNHLTEIP--- 512
G + L L VL ++ + + + + L L+ L LA N L
Sbjct: 110 ----------GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159
Query: 513 -------EMMFKNLLNLTYLD 526
+ K L NL LD
Sbjct: 160 NATSEYRIEVVKRLPNLKKLD 180
Score = 56.6 bits (137), Expect = 2e-09
Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Query: 168 RLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSD 227
L + ++ L + + L L+ N I S G+ NLRIL L
Sbjct: 29 ELHGMIPPIEKMDATLSTLK--ACKHLALSTNN-------IEKISSLSGMENLRILSLGR 79
Query: 228 NQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFL 287
N IK I E + D L EL + +N+ S+ + LR+L M+ N+I L
Sbjct: 80 NLIKKI-ENLDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKL 136
Query: 288 SQ-RWLERIILRGNRLTTIE 306
+ LE ++L GN L
Sbjct: 137 AALDKLEDLLLAGNPLYNDY 156
Score = 51.6 bits (124), Expect = 1e-07
Identities = 35/221 (15%), Positives = 71/221 (32%), Gaps = 62/221 (28%)
Query: 225 LSDNQIKAIEEGILKGCDNL--LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK 282
+ I+ EE +EL + + +L+ +A + L+
Sbjct: 6 TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDA-TLSTLKACKHLA---------- 54
Query: 283 ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGL 342
L N + I +G+ + IL+LG N + K+
Sbjct: 55 --------------LSTNNIEKISS--LSGMENLRILSLGRNLIKKIE------NLDAVA 92
Query: 343 AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES-TGLED- 400
+ L + YN++ L+ + L+ L ++ N + N L
Sbjct: 93 DTLEELWISYNQIASLSG-------------IEKLVNLRVLYMSNNKITNWGEIDKLAAL 139
Query: 401 -TLDNLNVRDNQITT---LSSSALNYKL--------LTKLD 429
L++L + N + +++ Y++ L KLD
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
Score = 49.7 bits (119), Expect = 6e-07
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
+R L N ++++ + DTL+EL ++ N I S S LVNLR+L +
Sbjct: 72 LRILSLGRNLIKKIEN--LDAVADTLEELWISYNQ-------IASLSGIEKLVNLRVLYM 122
Query: 226 SDNQIKAIEE-GILKGCDNLLELRMDHNRFTSIPSVSLNGP 265
S+N+I E L D L +L + N + +
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 61.7 bits (150), Expect = 3e-10
Identities = 52/338 (15%), Positives = 100/338 (29%), Gaps = 56/338 (16%)
Query: 393 LESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHL 452
D L+N ++ L L L H + +A +L L
Sbjct: 19 GCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVL-SSLRQL 77
Query: 453 NLSRN----AHLSSLPVGGFDPLKKLEVLDLA-----ATGLKSIPQYQFDELLNLKYLCL 503
NL+ + + L+ ++LA GL+++ L + L L
Sbjct: 78 NLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL----LPVFLRARKLGL 133
Query: 504 AHNHLTE-----IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLY-GL---PSMKRLDLSFN 554
N L + +++ + +T L LSNN + V L GL S+ L L
Sbjct: 134 QLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT 193
Query: 555 KLTTFKGDYFNTKSKPNTSSLEELNLNNNELTY----LFPSSFTIHSKLKTLKLAFNKFN 610
L + + N L+ELN+ N + H L+ L L FN+ +
Sbjct: 194 GLGDEGLELLAAQLDRNR-QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252
Query: 611 YFPKELIL-------GLSYLQEIDLSNNQL---------------KTIDDYDYGYLPRLR 648
++++ G + + + + D L
Sbjct: 253 SEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELL 312
Query: 649 KLNLNNNNID-----AISETCFFNSSQLQIINLSFNRL 681
+L ++ ++ ++ +
Sbjct: 313 LRDLEDSRGATLNPWRKAQLLRVEGE-VRALLEQLGSS 349
Score = 51.3 bits (123), Expect = 6e-07
Identities = 54/305 (17%), Positives = 107/305 (35%), Gaps = 45/305 (14%)
Query: 166 IRRLDFSGNAL-----RRLSDKLFSPHRDTLQELRLADNLFGD-SLNPIFSTSEFHGLVN 219
+R+L+ +G + ++ L S L E+ LA L + +
Sbjct: 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRH-ALDEVNLASCQLDPAGLRTLLP-----VFLR 127
Query: 220 LRILDLSDNQI-----KAIEEGILKGCDNLLELRMDHNRFTSIP----SVSLNGPRALRI 270
R L L N + K + + +L + LR+ +N T+ L G ++
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH 187
Query: 271 LSMAYNRIG----TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIH----ILNLG 322
LS+ + +G L A R L+ + + N A A+ H +L+L
Sbjct: 188 LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247
Query: 323 YNRLN----KLNSDTFQGGAFNGLAKIHILNLGYNRLN----KLNSDTFQGTHITIFSFF 374
+N L+ ++ D GGA G A++ + ++ + S+ + + +
Sbjct: 248 FNELSSEGRQVLRDL--GGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARV 305
Query: 375 QDFQKLKSLDLNGNFLINL------ESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKL 428
Q +L DL + L + +E + L + + S S + +
Sbjct: 306 QRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGA 365
Query: 429 DLSHN 433
H+
Sbjct: 366 GHHHH 370
Score = 31.6 bits (72), Expect = 0.84
Identities = 46/290 (15%), Positives = 81/290 (27%), Gaps = 66/290 (22%)
Query: 219 NLRILDLSDNQI-----KAIEEGILKGCDNLLELRMDHNRFTSIPSVSL-NGPRALRILS 272
+LR L+L+ ++ + + G L E+ + + +L R L
Sbjct: 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG 132
Query: 273 MAYNRIG----TLKADSFLSQRW-LERIILRGNRLTTIEGGAF-NGLA---KIHILNLGY 323
+ N +G D L + + + L N LT GLA + L+L +
Sbjct: 133 LQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH 192
Query: 324 NRLNKLNSDTFQGGAFNGLAK-------IHILNLGYNRLNKLNSDTFQGTHITIFSFFQD 376
L +G LA + LN+ YN + + ++
Sbjct: 193 TGL------GDEGLEL--LAAQLDRNRQLQELNVAYNGA------GDTAA-LALARAARE 237
Query: 377 FQKLKSLDLNGNFLINLESTGLED---------TLDNLNVRDNQITTLSSSAL------- 420
L+ L L N L + L D + ++ S L
Sbjct: 238 HPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNL 297
Query: 421 ---------NYKLLTKLDLSHNNLKELEPTAFTNV----PTLLHLNLSRN 457
+ L DL + L P + + L
Sbjct: 298 NSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLG 347
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 56.1 bits (135), Expect = 2e-08
Identities = 63/483 (13%), Positives = 136/483 (28%), Gaps = 83/483 (17%)
Query: 237 ILKGCDNLLELRMDHNRFT--SIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQ--RWL 292
I L + + + ++ L L + T + R +
Sbjct: 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKI 166
Query: 293 ERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGY 352
+ +++ + + +G + LA+ + +LN
Sbjct: 167 KTLLMEESSFSEKDGKWLHELAQ-------------------------HNTSLEVLNFYM 201
Query: 353 NRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES-----TGLEDTLDNLNV 407
K++ + + ++ + L S+ + ++ L LE+
Sbjct: 202 TEFAKISPKDLE-------TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN 254
Query: 408 RDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGG 467
D + + + + L +L LS+ E+ P F + L+L +
Sbjct: 255 EDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILFPFAAQIRKLDLLYALLETEDHCTL 313
Query: 468 FDPLKKLEVLDLAA----TGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE---------- 513
LEVL+ GL+ + QY LK L + + E
Sbjct: 314 IQKCPNLEVLETRNVIGDRGLEVLAQY----CKQLKRLRIERGADEQGMEDEEGLVSQRG 369
Query: 514 --MMFKNLLNLTYLDLSNNNIVNLRVGSLY-GLPSMKRLDLSF----NKLTTFKGDYFNT 566
+ + L Y+ + ++I N + S+ L ++ L ++T D
Sbjct: 370 LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429
Query: 567 KSKPNTSSLEELNLNNN-------ELTYLFPSSFTIHSKLKTLKLAFNKF-NYFPKELIL 618
L L+Y+ S ++ + L + + E
Sbjct: 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS----PNVRWMLLGYVGESDEGLMEFSR 485
Query: 619 GLSYLQEIDLSNNQLKTID-DYDYGYLPRLRKLNLNNNNI---DAISETCFFNSSQLQII 674
G LQ++++ LP LR L + +++I
Sbjct: 486 GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI 545
Query: 675 NLS 677
Sbjct: 546 PSR 548
Score = 53.0 bits (127), Expect = 3e-07
Identities = 49/313 (15%), Positives = 96/313 (30%), Gaps = 53/313 (16%)
Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLS---HNNLKELEPTAFTNV------------PT 448
++ + T + + L L L + L P +
Sbjct: 54 HVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ 113
Query: 449 LLHLNLSR----NAHLSSLPVGGFDPLKKLEVLDLAA------TGLKSIPQYQFDELLNL 498
L ++ R + L L LE L L GL SI + +
Sbjct: 114 LKSVHFRRMIVSDLDLDRLAKARA---DDLETLKLDKCSGFTTDGLLSIVTH----CRKI 166
Query: 499 KYLCLAHNHLTEIP----EMMFKNLLNLTYLDLSNNNIVNLRVGSL----YGLPSMKRLD 550
K L + + +E + ++ +L L+ + L S+ +
Sbjct: 167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226
Query: 551 LSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFN 610
+ ++ G + K+ N +LN + + KL L L++ N
Sbjct: 227 VGDFEILELVGFF---KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN 283
Query: 611 YFPKELILGLSYLQEIDLSNNQLKTIDDYDY-GYLPRLRKLNLNN----NNIDAISETCF 665
P L + ++++DL L+T D P L L N ++ +++ C
Sbjct: 284 EMP-ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC- 341
Query: 666 FNSSQLQIINLSF 678
QL+ + +
Sbjct: 342 ---KQLKRLRIER 351
Score = 32.2 bits (73), Expect = 0.61
Identities = 43/310 (13%), Positives = 95/310 (30%), Gaps = 49/310 (15%)
Query: 191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIE-EGILKGCDNLLELRM 249
L R L + P F +R LDL ++ + +++ C NL L
Sbjct: 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325
Query: 250 DHN-RFTSIPSVSLNGPRALRILSMAY--NRIGTLKADSFLSQRWLERIILRGNRLTTIE 306
+ + ++ + L+ L + + G + +SQR L +
Sbjct: 326 RNVIGDRGLEVLAQYCKQ-LKRLRIERGADEQGMEDEEGLVSQRGLIAL----------- 373
Query: 307 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAK--IHILNLGYNRLNKLNSDTFQ 364
G ++ + + + + ++ + + ++ + L++ T
Sbjct: 374 ---AQGCQELEYMAVYVSDI----TNE----SLESIGTYLKNLCDFRLVLLDREERITDL 422
Query: 365 GTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLE------DTLDNLNVRDNQIT--TLS 416
+ S +KL+ L GL + + + + L
Sbjct: 423 PLDNGVRSLLIGCKKLRRFAFYLR-QGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481
Query: 417 SSALNYKLLTKLDLSHNNLKELE-PTAFTNVPTLLHLNLSRNAHLSSLPVGGFD------ 469
+ L KL++ E A T +P+L +L + + G D
Sbjct: 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY----RASMTGQDLMQMAR 537
Query: 470 PLKKLEVLDL 479
P +E++
Sbjct: 538 PYWNIELIPS 547
Score = 28.8 bits (64), Expect = 6.9
Identities = 34/227 (14%), Positives = 70/227 (30%), Gaps = 35/227 (15%)
Query: 191 LQELRLA--DNLFGDSLNPIFSTSE-----FHGLVNLRILDLSDNQI--KAIEEGILKGC 241
L+ LR+ + G + G L + + + I +++E I
Sbjct: 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES-IGTYL 402
Query: 242 DNLLELRM----DHNRFTSIP-----SVSLNGPRALRILSMAYNRIG-TLKADSFLSQRW 291
NL + R+ R T +P L G + LR + + G T S++ Q
Sbjct: 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462
Query: 292 --LERIILRGNRLTTIEGGAF-NGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHIL 348
+ ++L + F G + L + S+ A L + L
Sbjct: 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF----SERAIAAAVTKLPSLRYL 518
Query: 349 NLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES 395
+ R + T + + + ++ + +N +
Sbjct: 519 WVQGYRASM--------TGQDLMQMARPYWNIELIPSRRVPEVNQQG 557
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 56.1 bits (135), Expect = 3e-08
Identities = 64/490 (13%), Positives = 148/490 (30%), Gaps = 65/490 (13%)
Query: 127 FPNGEYPTLPYGLNLVTFS---QRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKL 183
FP L + F+ W G+ ++ SSS + + + +L
Sbjct: 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124
Query: 184 FSPHRDTLQELRLA--DNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIE----EGI 237
+ + L L+ + D L I + NL+ LDL ++ + +
Sbjct: 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAA-----TCRNLKELDLRESDVDDVSGHWLSHF 179
Query: 238 LKGCDNL--LELRMDHNRFT--SIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLE 293
+L L + + + ++ + P L+ L + A LE
Sbjct: 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPN-LKSLKLNRAVPLEKLATLLQRAPQLE 238
Query: 294 RIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQG--GAFNGLAKIHILNLG 351
+ G ++GL+ L+ ++ +++ LNL
Sbjct: 239 ELGTGGYTAEV-RPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS 297
Query: 352 YNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNF-----------LINLESTGLED 400
Y + + KL+ L + +L +
Sbjct: 298 YATV----------QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347
Query: 401 TLDNLNVRDNQIT--TLSSSALNYKLLTKLDLSHNNLKELEPTAF-TNVPTLLHLNLSRN 457
+ + + +T L S ++ L + + N P + L
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407
Query: 458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK 517
+ + LE LD G +I ++ +L+ L L+ ++ E +
Sbjct: 408 EPKAPDYLT-------LEPLD---IGFGAIVEH----CKDLRRLSLSGLLTDKVFEYIGT 453
Query: 518 NLLNLTYLDLSNNNIVNLRVGSL-YGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLE 576
+ L ++ +L + + G S+++L++ +K + ++
Sbjct: 454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE----TMR 509
Query: 577 ELNLNNNELT 586
L +++ ++
Sbjct: 510 SLWMSSCSVS 519
Score = 50.7 bits (121), Expect = 1e-06
Identities = 70/447 (15%), Positives = 141/447 (31%), Gaps = 71/447 (15%)
Query: 288 SQRWLE-----RIILRGNRLTTIEGGA----FNGLAKIHILNLGYNRLNKLNSDTFQGGA 338
+ W E R + + F + + + + L D + G
Sbjct: 34 CKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYV 93
Query: 339 FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGL 398
+ + + Y L ++ T + + F+ K L L+ + + GL
Sbjct: 94 YPWIEAMS---SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS--TDGL 148
Query: 399 ED------TLDNLNVRDNQITTLSSSAL-----NYKLLTKLDLS-------HNNLKELEP 440
L L++R++ + +S L Y L L++S + L+ L
Sbjct: 149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL-- 206
Query: 441 TAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA------TGLKSIPQYQFDE 494
T P L L L+R L L +LE L + S
Sbjct: 207 --VTRCPNLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263
Query: 495 LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSL-YGLPSMKRLDLSF 553
L+ L + + ++ LT L+LS + + + L P ++RL +
Sbjct: 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL- 322
Query: 554 NKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSS----------FTIHSKLKTLK 603
G + + L EL + +E + P+ KL+++
Sbjct: 323 -DYIEDAGLEVLASTCKD---LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378
Query: 604 LAFNKFNYFP-KELILGLSYLQEIDLSNNQLKTIDDY-----DYG------YLPRLRKLN 651
+ + + L + K D D G + LR+L+
Sbjct: 379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438
Query: 652 LNNNNIDAISETCFFNSSQLQIINLSF 678
L+ D + E + ++++++++F
Sbjct: 439 LSGLLTDKVFEYIGTYAKKMEMLSVAF 465
Score = 46.8 bits (111), Expect = 2e-05
Identities = 74/508 (14%), Positives = 161/508 (31%), Gaps = 85/508 (16%)
Query: 199 NLFGDSLNPIFSTSEFHGLVNLRILDLSD---------------NQIKAIEEGILKGCDN 243
+F + + + +R ++L + E +
Sbjct: 47 KVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW 106
Query: 244 LLELRMDHNRFT--SIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQ--RWLERIILRG 299
L E+R+ T + ++ + ++L ++ + + ++ R L+ + LR
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKN-FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE 165
Query: 300 NRLTTIEGGAFNGLAKIHILNLGYNRLNKLN-SDTFQGGAFNGLAKI--HILNLGYNRLN 356
+ + + G + Y L LN S +F+ L ++ NL +LN
Sbjct: 166 SDVDDVSGHWLSHFPD------TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219
Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
+ + + Q +L+ L G VR + + LS
Sbjct: 220 RAVPLE------KLATLLQRAPQLEELGTGGYTAE---------------VRPDVYSGLS 258
Query: 417 SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEV 476
+ K L L + + P ++ L LNLS S V KL+
Sbjct: 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQR 318
Query: 477 LDLAA----TGLKSIPQYQFDELLNLKYLCLAHNHLTEIP----------EMMFKNLLNL 522
L + GL+ + +L+ L + + + + L
Sbjct: 319 LWVLDYIEDAGLEVLAST----CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKL 374
Query: 523 TYLDLSNNNIVNLRVGSL-YGLPSMKRLDLSFNKLTTFKGDYFNTKS--------KPNTS 573
+ + N + ++ P+M R L + DY + +
Sbjct: 375 ESVLYFCRQMTNAALITIARNRPNMTRFRLC--IIEPKAPDYLTLEPLDIGFGAIVEHCK 432
Query: 574 SLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKF-NYFPKELILGLSYLQEIDLSNNQ 632
L L+L+ +F T K++ L +AF + ++ G L+++++ +
Sbjct: 433 DLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492
Query: 633 LKTIDD---YDYGYLPRLRKLNLNNNNI 657
D + L +R L +++ ++
Sbjct: 493 F--GDKALLANASKLETMRSLWMSSCSV 518
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 2e-07
Identities = 60/356 (16%), Positives = 102/356 (28%), Gaps = 117/356 (32%)
Query: 428 LDLSHNNLKELEPTAFTNVPTLLHLNLS--RNAHLSSLPVGGFDPLKKLE-------VLD 478
L LSH +L E VPT S + LP +P + +
Sbjct: 9 LTLSHGSL---EHV--LLVPTASFFIASQLQEQFNKILP----EPTEGFAADDEPTTPAE 59
Query: 479 LAATGLKSI-------PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNN 531
L L + QFD++LN LCL F+N Y L N+
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLN---LCLTE----------FEN----CY--LEGND 100
Query: 532 IVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTK-------SKPNTSSL-EELNLNNN 583
I + L + L + + Y + K + S+L + N
Sbjct: 101 I-HALAAKLLQ-ENDTTLVKTKELIKN----YITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 584 ELTYLF-----PSSFTIHSKLKTLKLAFNKFNYFPKELILGLS-YLQEIDLSNNQLKTID 637
+L +F + + L+ + ++ +LI + L E L L
Sbjct: 155 QLVAIFGGQGNTDDY-----FEELRDLYQTYHVLVGDLIKFSAETLSE--LIRTTLDAEK 207
Query: 638 DYDYGYLPRLRKLNLNN--NNIDAISETCFFNSSQ--------LQIIN--LSFNRLEKLP 685
+ G LN+ N + + S +Q+ + ++ L P
Sbjct: 208 VFTQG-------LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 686 ERLFNTF------------------------LYTNYDMAPNLVFQSHLSGHRCECA 717
L + + + A ++F G RC A
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF---FIGVRCYEA 313
Score = 42.3 bits (99), Expect = 6e-04
Identities = 73/439 (16%), Positives = 130/439 (29%), Gaps = 149/439 (33%)
Query: 158 IFSSSDIPIRRL-DFSGNALRRLS------DKLFSPHRDTLQELRLADNLFGD------- 203
++ + + + L FS L L +K+F+ + L+ L N
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 204 -SLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSL 262
S I H +V ++L + ++++ +G G L V+
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT-GHSQGL--------------VT- 279
Query: 263 NGPRALRILSMAYNRIGTLKADSFLSQ-----RWLERIILRGNRLTTIEGGAFNGLAKIH 317
A+ ++ + +SF L I +R A+ +
Sbjct: 280 ----AV-AIAET----DS--WESFFVSVRKAITVLFFIGVRCYE-------AYPNTS--- 318
Query: 318 ILNLGYNRLNKLNSDTFQGG--------AFNGLAKIHILNLGYNRLNKLNSDTFQGTHIT 369
L + D+ + + + L + + + +NK NS G +
Sbjct: 319 -LPP------SILEDSLENNEGVPSPMLSISNLTQEQVQ----DYVNKTNSHLPAGKQVE 367
Query: 370 IFSFFQDFQKLKSLDLNG--NFLINLESTGLEDTLDNLNVR---------DNQITTLSSS 418
I SL +NG N ++ +G +L LN+ +Q S
Sbjct: 368 I-----------SL-VNGAKNLVV----SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 419 ALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLD 478
KL S+ L P A P H S L P L D
Sbjct: 412 R-------KLKFSNRFL----PVA---SP--FH---------SHL----LVPASDLINKD 442
Query: 479 LAATGLK------SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNL-----TYLDL 527
L + IP Y + +L+ L I E + ++ L T
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLS------GSISERIVDCIIRLPVKWETTTQF 496
Query: 528 SNNNIVNLRVGSLYGLPSM 546
+I++ G GL +
Sbjct: 497 KATHILDFGPGGASGLGVL 515
Score = 40.0 bits (93), Expect = 0.004
Identities = 98/601 (16%), Positives = 182/601 (30%), Gaps = 220/601 (36%)
Query: 175 ALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSE----FHGLVNLRILDLSDNQ- 229
+L ++ F+ L E + D + + +E F G V+ + Q
Sbjct: 29 IASQLQEQ-FN---KILPEP--TEGFAAD--DEPTTPAELVGKFLGYVSSLVEPSKVGQF 80
Query: 230 -------IKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAY------- 275
+ E L+G +++ H + + + L Y
Sbjct: 81 DQVLNLCLTEFENCYLEG-NDI------HALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 276 NRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQ 335
R K++S L + +L I F G Q
Sbjct: 134 KRPFDKKSNSAL----FRAVGEGNAQLVAI----FGG----------------------Q 163
Query: 336 GGA---FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQ---DFQKL--KSLDLNG 387
G F L + Y + L D + + T+ + D +K+ + L++
Sbjct: 164 GNTDDYFEELRDL------YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-L 216
Query: 388 NFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTK-LDLSHNNLKELEPTAFTNV 446
+L N +T +D L ++ + I + +Y + K L + L+ A +
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQ--LAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 447 PTLLHLNLSRNAHLSSLPVGG------FDPL--KKLEVLDLAATGLKS---IPQYQFDEL 495
L+ +++ + F K + VL G++ P
Sbjct: 275 QGLV----------TAVAIAETDSWESFFVSVRKAITVL--FFIGVRCYEAYPNTSLPPS 322
Query: 496 LNLKYLCLAHNHLTEIPEMMFKNLLNLT------YLDLSNNNI-VNLRVG-SLY------ 541
+ L+ L +N +P M ++ NLT Y++ +N+++ +V SL
Sbjct: 323 I-LED-SLENNE--GVPSPML-SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 542 ---GLP-SMKRLDLSFNKLTTFKGDY-----FNTKSKPNTSSLEELNLNNNELTYLFPSS 592
G P S+ L+L+ K G F ++ K S+ +L P +
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF-SERKLKFSN-----------RFL-PVA 424
Query: 593 --FTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKL 650
F HS L L A +LI DL N +
Sbjct: 425 SPF--HSHL--LVPA--------SDLINK-------DLVKNNVS---------------- 449
Query: 651 NLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNYDM-------APNL 703
FN+ +QI P +++TF D+ + +
Sbjct: 450 ---------------FNAKDIQI-----------P--VYDTF--DGSDLRVLSGSISERI 479
Query: 704 V 704
V
Sbjct: 480 V 480
Score = 38.5 bits (89), Expect = 0.011
Identities = 69/446 (15%), Positives = 124/446 (27%), Gaps = 165/446 (36%)
Query: 350 LGYNRLNKLNSDTFQGTHITIFSF-FQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVR 408
LGY ++ L + G + + +F+ +L
Sbjct: 65 LGY--VSSLVEPSKVGQFDQVLNLCLTEFEN--------CYL-----------------E 97
Query: 409 DNQITTLSSSALNYKLLTKLDLSHNNLKE-LEPTAFTNVPTLLHLNLSRNAHLSSLPVGG 467
N I L++ L + T L + +K + P S+L
Sbjct: 98 GNDIHALAAK-LLQENDTTLVKTKELIKNYITARIMAKRPF-------DKKSNSAL---- 145
Query: 468 FDPLKKLEVLDLAATGLKSIPQY-----Q------FDELLNL--KYLCLAHNHLTEIPEM 514
G + Q F+EL +L Y H + ++ +
Sbjct: 146 ---------FRAVGEGNAQL--VAIFGGQGNTDDYFEELRDLYQTY----HVLVGDLIKF 190
Query: 515 MFKNLLNLTYLDLSNNNIVNLRVGSLY--GLPSMKRLDLSFNKLTTFKGDYFNTK--SKP 570
+ L L L ++ GL ++ L+ N T DY + S P
Sbjct: 191 SAETLSELIRTTLDAE--------KVFTQGLNILEWLE---NPSNTPDKDYLLSIPISCP 239
Query: 571 ---------NTSSLEELNLNNNELTYLFPSSFTIHSK---------------------LK 600
+ + L EL T HS+ K
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYL-KGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 601 TLKLAFNKF------NYFPKELILGLSYLQE---------------IDLSNNQLKTIDDY 639
+ + F F +P L S L++ +L+ Q++ +
Sbjct: 299 AITVLF--FIGVRCYEAYP-NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 640 DYGYLPRLRKLNLNNNNIDAISETCFF---NSSQLQIINLSFNRLE--------KLP--E 686
+LP +++ ++ N L +NL+ + + ++P E
Sbjct: 356 TNSHLPAGKQVEISLVN----GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 687 R---LFNTFLYTNYDMAPNLVFQSHL 709
R N FL +P F SHL
Sbjct: 412 RKLKFSNRFLPVA---SP---FHSHL 431
Score = 30.4 bits (68), Expect = 2.8
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 33/113 (29%)
Query: 571 NTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPK---------------E 615
+ S L L++ L ++ L+ FNK P+ E
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNK--ILPEPTEGFAADDEPTTPAE 59
Query: 616 LILG-LSYL-QEIDLSNNQ-----LKT-IDDYDYGYLPRLRKLNLNNNNIDAI 660
L+ L Y+ ++ S L + +++ Y L N+I A+
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY--------LEGNDIHAL 104
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 52.6 bits (125), Expect = 2e-07
Identities = 47/271 (17%), Positives = 91/271 (33%), Gaps = 15/271 (5%)
Query: 327 NKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLN 386
KL ++ + G L ++ + L+ D + + +KL SL
Sbjct: 54 GKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGV-NLMDKILKDKKLPSLKQI 112
Query: 387 GNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNV 446
E D D + + + ++S +L P +
Sbjct: 113 TIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP-VLDAM 171
Query: 447 PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVL--DLAATGLKSIPQYQFDELLNLKYLCLA 504
P L +L + +LS + LK LE++ L + ++ I L L
Sbjct: 172 PLLNNLKIKGTNNLS-IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGV 230
Query: 505 HNHLTEIPEMMFKNLL------NLTYLDLSNNNIVNLRVGSLYG---LPSMKRLDLSFNK 555
++ + +F+ L NL +L + + N+ V LP ++ +D+S
Sbjct: 231 EDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290
Query: 556 LTTFKGDYFNTKSKPNTSSLEELNLNNNELT 586
LT +G L+ +N+ N L+
Sbjct: 291 LTD-EGARLLLDHVDKIKHLKFINMKYNYLS 320
Score = 42.2 bits (98), Expect = 4e-04
Identities = 25/160 (15%), Positives = 58/160 (36%), Gaps = 21/160 (13%)
Query: 370 IFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL---NYKLLT 426
+ L +L + G +++ L +L + + + + L
Sbjct: 164 LSPVLDAMPLLNNLKIKGTNNLSIGKKPRP-NLKSLEIISGGLPDSVVEDILGSDLPNLE 222
Query: 427 KLDLS--------HNNLKELEPT-AFTNVPTLLHLNLSRNAHLSSLP--VGGFDPLKKLE 475
KL L ++ P + P L L + + + D L +LE
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282
Query: 476 VLDLAA-----TGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
+D++A G + + D++ +LK++ + +N+L++
Sbjct: 283 TMDISAGVLTDEGARLLLD-HVDKIKHLKFINMKYNYLSD 321
Score = 39.9 bits (92), Expect = 0.002
Identities = 34/207 (16%), Positives = 75/207 (36%), Gaps = 28/207 (13%)
Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEM----MFKNLLNLTYLDLSNNNIVNLRVGS 539
+++ ++ E L + ++ I ++ + + L L + N +++
Sbjct: 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI---G 188
Query: 540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKL 599
P++K L++ L + PN LE+L L Y F +
Sbjct: 189 KKPRPNLKSLEIISGGLPDSVVEDILGSDLPN---LEKLVLYVGVEDYGFDGD------M 239
Query: 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNI-- 657
+ F+K + FP LG+ +E ++ D LP+L ++++ +
Sbjct: 240 NVFRPLFSK-DRFPNLKWLGIVDAEEQNVVVEMFLESD-----ILPQLETMDISAGVLTD 293
Query: 658 ---DAISETCFFNSSQLQIINLSFNRL 681
+ + L+ IN+ +N L
Sbjct: 294 EGARLLLDHVDKI-KHLKFINMKYNYL 319
Score = 30.3 bits (67), Expect = 2.2
Identities = 5/46 (10%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 185 SPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQI 230
S L+ + ++ + D + + +L+ +++ N +
Sbjct: 275 SDILPQLETMDISAGVLTDEGARLLLDH-VDKIKHLKFINMKYNYL 319
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 51.3 bits (123), Expect = 6e-07
Identities = 51/399 (12%), Positives = 127/399 (31%), Gaps = 75/399 (18%)
Query: 302 LTTIEGGAFNGLAKIHILNLGYNRLNKLNSD----TFQGGAFNGLAKIHILNLGYNRLNK 357
L A + LN+ + + Q F+ + + K
Sbjct: 31 LPAKTIYALGENIDLTGLNVTGKYDDGKQRPVKVTSEQISGFSSSVPVDKQEVTITIEGK 90
Query: 358 LNSDTFQGTHITI--FSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTL 415
S + + + + + + + L N + ++
Sbjct: 91 QKSFSVHISPVRVENGVLTEILKGYNEIILP-----------------------NSVKSI 127
Query: 416 SSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLE 475
A + K+ L+ LK + AF N T+ +
Sbjct: 128 PKDAFRNSQIAKVVLN-EGLKSIGDMAFFNS-TVQEIVFP-------------------- 165
Query: 476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL 535
+ L+ + + F NLK L+ +T++P F + + L + +
Sbjct: 166 ------STLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY-AGIEEVLLP-VTLKEI 217
Query: 536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTI 595
+ +K +++ ++T + F S + + L N +T + +F
Sbjct: 218 GSQAFLKTSQLKTIEIP-ENVSTIGQEAF------RESGITTVKLPNG-VTNIASRAFYY 269
Query: 596 HSKLKTLKLAFNKFNYFPKELI-----LGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKL 650
+L + + FN P+ +I G L ++ + ++ + G ++ +L
Sbjct: 270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQL 328
Query: 651 NLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
+ N+ I+ + F N+ ++ + + ++ E+++
Sbjct: 329 TI-PANVTQINFSAFNNTG-IKEVKVEGTTPPQVFEKVW 365
Score = 44.3 bits (105), Expect = 1e-04
Identities = 47/326 (14%), Positives = 104/326 (31%), Gaps = 54/326 (16%)
Query: 300 NRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQ--------GGAFNGLAKIHILNLG 351
++T+ + F+ + + K S + G L + + L
Sbjct: 62 VKVTSEQISGFSSSVPVDKQEVTITIEGKQKSFSVHISPVRVENGVLTEILKGYNEIILP 121
Query: 352 YNRLNKLNSDTFQGTHITIFSF-----------FQDFQKLKSLDLNGNFLINLES----- 395
N + + D F+ + I F + ++ + L L+
Sbjct: 122 -NSVKSIPKDAFRNSQIAKVVLNEGLKSIGDMAFFN-STVQEIVFPST-LEQLKEDIFYY 178
Query: 396 -TGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
L+ ++ +IT L +S Y + ++ L LKE+ AF L + +
Sbjct: 179 CYNLK----KADLSKTKITKLPASTFVYAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEI 233
Query: 455 SRNAHLSSLPVGGFD--PLKKLEVLDLAATGLKSIPQYQFDELLNLKYL-----CLAHNH 507
N +S++ F + +++ + G+ +I F L + +
Sbjct: 234 PEN--VSTIGQEAFRESGITTVKLPN----GVTNIASRAFYYCPELAEVTTYGSTFNDDP 287
Query: 508 LTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTK 567
I + L ++ +I L G L G + +L + +T F
Sbjct: 288 EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIP-ANVTQINFSAF--- 342
Query: 568 SKPNTSSLEELNLNNNELTYLFPSSF 593
N + ++E+ + +F +
Sbjct: 343 ---NNTGIKEVKVEGTTPPQVFEKVW 365
Score = 33.9 bits (78), Expect = 0.16
Identities = 31/187 (16%), Positives = 65/187 (34%), Gaps = 33/187 (17%)
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFN--GLAKIHILNLGYNRLNKLNSDTFQGG 337
LK D F L++ L ++T + F G+ ++ + L ++ S F
Sbjct: 170 QLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP----VTLKEIGSQAFLKT 225
Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSF-----------FQDFQKLKSLDLN 386
+ L I I ++ + + F+ + IT F +L +
Sbjct: 226 --SQLKTIEIP----ENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTY 279
Query: 387 GNFLINLESTGLED-------TLDNLNVRDNQITTLSSSALNY-KLLTKLDLSHNNLKEL 438
G+ + + L + ++ I L L + +T+L + N+ ++
Sbjct: 280 GSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIP-ANVTQI 337
Query: 439 EPTAFTN 445
+AF N
Sbjct: 338 NFSAFNN 344
Score = 30.1 bits (68), Expect = 2.7
Identities = 29/161 (18%), Positives = 55/161 (34%), Gaps = 24/161 (14%)
Query: 552 SFNKLTTFKGDYFNTKSKPNT-SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFN 610
G Y + K +P +S + +++ + TI K K+ + +
Sbjct: 43 IDLTGLNVTGKYDDGKQRPVKVTSEQISGFSSSVPVDKQEVTITIEGKQKSFSVHISPVR 102
Query: 611 YFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN--------------- 655
L L EI L N+ +K+I + ++ K+ LN
Sbjct: 103 VENGVLTEILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEGLKSIGDMAFFNSTVQ 160
Query: 656 ------NIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
++ + E F+ L+ +LS ++ KLP F
Sbjct: 161 EIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV 201
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 45.4 bits (107), Expect = 3e-05
Identities = 34/103 (33%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 381 KSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEP 440
++LDL G L + ++ LN R TL N L L+LS+N L L+
Sbjct: 130 QALDLKG--LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDD 187
Query: 441 --TAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLK--KLEVLDL 479
+ P L LNLS N L S D +K KLE L L
Sbjct: 188 MSSIVQKAPNLKILNLSGN-ELKSE--RELDKIKGLKLEELWL 227
Score = 38.4 bits (89), Expect = 0.005
Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 13/121 (10%)
Query: 564 FNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKEL-ILGLSY 622
SK S + L+L + + + N+ + L I+ +
Sbjct: 118 KLIMSKRYDGSQQALDLKGLRSDPDL--------VAQNIDVVLNRRSCMAATLRIIEENI 169
Query: 623 --LQEIDLSNNQLKTIDDYD--YGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSF 678
L ++LSNN+L +DD P L+ LNL+ N + + E +L+ + L
Sbjct: 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDG 229
Query: 679 N 679
N
Sbjct: 230 N 230
Score = 37.3 bits (86), Expect = 0.011
Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 37/157 (23%)
Query: 502 CLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKG 561
L L P+++ +N+ + L+ + LR+ +P + L+LS N+L
Sbjct: 131 ALDLKGLRSDPDLVAQNIDVV--LNRRSCMAATLRIIEEN-IPELLSLNLSNNRLYRLDD 187
Query: 562 DYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLS 621
+ PN L+ LNL+ NEL S K+K LK
Sbjct: 188 MSSIVQKAPN---LKILNLSGNEL-----KSERELDKIKGLK------------------ 221
Query: 622 YLQEIDLSNNQLKTIDDYDYGY-------LPRLRKLN 651
L+E+ L N L Y P+L +L+
Sbjct: 222 -LEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257
Score = 37.3 bits (86), Expect = 0.013
Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 12/114 (10%)
Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
S + LDL + + ++ L + L + +L +L
Sbjct: 127 GSQQALDLKGLRS------DPDLVAQNIDVVLNRRSCMAATLRIIE----ENIPELLSLN 176
Query: 604 LAFNKFNYFP--KELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
L+ N+ ++ L+ ++LS N+LK+ + D +L +L L+ N
Sbjct: 177 LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 230
Score = 35.7 bits (82), Expect = 0.041
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
Query: 205 LNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS--L 262
L + S + +L+ + I + LL L + +NR + +S +
Sbjct: 134 LKGLRSDPDLVAQNIDVVLNRRSCMAATLR-IIEENIPELLSLNLSNNRLYRLDDMSSIV 192
Query: 263 NGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTT 304
L+IL+++ N + + + + LE + L GN L
Sbjct: 193 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 234
Score = 33.4 bits (76), Expect = 0.23
Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 8/125 (6%)
Query: 564 FNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYL 623
S P + L EL E L S S+ + L L + + + + L
Sbjct: 95 IINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQ-QALDLKGLRSDPDLVAQNIDVV-L 152
Query: 624 QEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAIS--ETCFFNSSQLQIINLSFNRL 681
L+ I++ +P L LNL+NN + + + + L+I+NLS N L
Sbjct: 153 NRRSCMAATLRIIEEN----IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 208
Query: 682 EKLPE 686
+ E
Sbjct: 209 KSERE 213
Score = 32.3 bits (73), Expect = 0.43
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 23/100 (23%)
Query: 342 LAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES----TG 397
+ ++ LNL NRL +L+ + S Q LK L+L+GN L + G
Sbjct: 169 IPELLSLNLSNNRLYRLDD---------MSSIVQKAPNLKILNLSGNELKSERELDKIKG 219
Query: 398 LEDTLDNLNVRDNQITTLSSSALNYKL--------LTKLD 429
L+ L+ L + N + Y L +LD
Sbjct: 220 LK--LEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257
Score = 28.8 bits (64), Expect = 5.5
Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 27/114 (23%)
Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
+ + LDL +++ + + + D +L R ++ + N P L L+++ NR
Sbjct: 127 GSQQALDLK--GLRSDPDLVAQNIDVVLNRR--SCMAATLRIIEENIPE-LLSLNLSNNR 181
Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNS 331
+ L S + Q+ + ILNL N L
Sbjct: 182 LYRLDDMSSIVQKA----------------------PNLKILNLSGNELKSERE 213
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 45.5 bits (108), Expect = 3e-05
Identities = 37/230 (16%), Positives = 75/230 (32%), Gaps = 13/230 (5%)
Query: 468 FDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAH----NHLTEIPEMMFKNLLNLT 523
D L+VLD++ +K Y+ +A+ + + + K L
Sbjct: 45 RDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLE 104
Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
+ LS I N+ + G ++K + + L +
Sbjct: 105 KVILSEK-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF 163
Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDY-- 641
+F L+T E++ ++I+ +D+ D+
Sbjct: 164 -KNRWEHFAFIEGEPLETTIQ-VGAMGKLEDEIMKAGLQPRDINFLTI-EGKLDNADFKL 220
Query: 642 --GYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
Y+P L L+++ N I + F L I L + L+ + +R+F
Sbjct: 221 IRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP-HNLKTIGQRVF 269
Score = 44.0 bits (104), Expect = 1e-04
Identities = 55/353 (15%), Positives = 114/353 (32%), Gaps = 51/353 (14%)
Query: 179 LSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGIL 238
L + +++ L L L + + +L++LD+S+ +IK
Sbjct: 15 LISMMTEEEANSITHLTLTGKLNAEDFRHLRDE-----FPSLKVLDISNAEIKMYSGKAG 69
Query: 239 KGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILR 298
+ + + + + + A++ + ++ LE++IL
Sbjct: 70 TYPNGKF--------YIYMANF---------VPAYAFSNVVN---GVTKGKQTLEKVIL- 108
Query: 299 GNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKL 358
++ IE AF G + I + L + + + I I L
Sbjct: 109 SEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEAL----ADSVTAIFI---------PL 155
Query: 359 NSDTFQGTHITIFSF-FQDFQKLKSLDLNGNFLINLESTGLED--TLDNLNVRDNQITTL 415
S F F + + L++ G + LE ++ ++N L
Sbjct: 156 GSSDAYRFKNRWEHFAFIEGEPLETTIQVGA-MGKLEDEIMKAGLQPRDINFLTI-EGKL 213
Query: 416 SSSA-----LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP 470
++ L LD+S N + F LL + L N L ++ F
Sbjct: 214 DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSN 271
Query: 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
+L + +I F NL+Y+ + +T + + +F N +
Sbjct: 272 CGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324
Score = 40.5 bits (95), Expect = 0.001
Identities = 49/342 (14%), Positives = 101/342 (29%), Gaps = 51/342 (14%)
Query: 350 LGYNRLNKLNSDTFQG--THITIFSFFQDFQKLKSLDLNGNFLINLEST-------GLED 400
+ N + T G +F LK LD++ +
Sbjct: 19 MTEEEANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYI 78
Query: 401 TLDNLNVRDNQITTLSSSA-LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAH 459
+ N + + + + L K+ LS +K +E AF L + +
Sbjct: 79 YMANFVP-AYAFSNVVNGVTKGKQTLEKVILS-EKIKNIEDAAFKGCDNLKICQIRKKTA 136
Query: 460 LSSLPVGGFDPLKKLEVLD---LAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMF 516
+ LP D + + + A + F E L+ + ++ + +
Sbjct: 137 PNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQ-VGAMGKLEDEIM 195
Query: 517 KNLLNLTYLDLSNNNIVNLRVG---SLYGLPSMKRLDLSFNKLTTFKGDY-FNTKSKPNT 572
K L ++ +P++ LD+S TT D+ F
Sbjct: 196 KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTI-PDFTFA-----QK 249
Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
L ++ L +N L + F+ +L ++L +
Sbjct: 250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAG-----------------------TLELPAS- 284
Query: 633 LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQII 674
+ I+ + LR + + I + + F N ++I
Sbjct: 285 VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326
Score = 34.0 bits (78), Expect = 0.14
Identities = 23/205 (11%), Positives = 51/205 (24%), Gaps = 30/205 (14%)
Query: 515 MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDL-SFNKLTTFK--GDY-FNTKSK- 569
+ +L LD+SN I + + + +F F + K
Sbjct: 44 LRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL 103
Query: 570 -----PNT------------SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYF 612
+L+ + L P + + L + F
Sbjct: 104 EKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF 163
Query: 613 PKEL----ILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNI---DAISETCF 665
+ L+ + ++D + R +N +A +
Sbjct: 164 KNRWEHFAFIEGEPLETTIQVGA-MGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIR 222
Query: 666 FNSSQLQIINLSFNRLEKLPERLFN 690
L +++S +P+ F
Sbjct: 223 DYMPNLVSLDISKTNATTIPDFTFA 247
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 41.7 bits (98), Expect = 2e-04
Identities = 12/94 (12%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSL 575
+ + +D +++ I+++ + GL ++++ L ++ + S+
Sbjct: 57 PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116
Query: 576 EELNL-NNNELTYLFPSSFTIHSKLKTLKLAFNK 608
E+ + + +T + LK L L+
Sbjct: 117 LEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150
Score = 40.2 bits (94), Expect = 8e-04
Identities = 18/110 (16%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 459 HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNH------LTEIP 512
+ LP G K++ +D + + SI + L ++ + L H L +
Sbjct: 49 DYNHLP-TGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS 107
Query: 513 EMMFKNLLNLTYLDLSNN-NIVNLRVGSLYGLPSMKRLDLSFNKLTTFKG 561
++ ++ +++ + N+ + + +L+ ++K L LS K
Sbjct: 108 QLE-NLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKE 156
Score = 34.0 bits (78), Expect = 0.082
Identities = 19/129 (14%), Positives = 46/129 (35%), Gaps = 24/129 (18%)
Query: 415 LSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN--------AHLSSLPVG 466
L + L+ + +D + + + + + + + L + LS L
Sbjct: 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE-- 110
Query: 467 GFDPLKKLEVLDLAA------TGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLL 520
+ K + +++ + G+ ++ NLKYL L+ + E + +
Sbjct: 111 --NLQKSMLEMEIISCGNVTDKGIIALHH-----FRNLKYLFLSDLPGVKEKEKIVQAFK 163
Query: 521 -NLTYLDLS 528
+L L+L
Sbjct: 164 TSLPSLELK 172
Score = 30.2 bits (68), Expect = 1.7
Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 618 LGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNN------IDAISETCFFNSSQL 671
L +Q ID +++ + +I L + K+ L + ++ +S+ S +
Sbjct: 58 LDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKS-M 116
Query: 672 QIINLSFNR 680
+ +
Sbjct: 117 LEMEIISCG 125
Score = 28.3 bits (63), Expect = 6.5
Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 10/99 (10%)
Query: 587 YLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYL-- 644
P+ K++ + + + + GL Y+++I L I+D L
Sbjct: 51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC--HYIEDGCLERLSQ 108
Query: 645 -----PRLRKLNL-NNNNIDAISETCFFNSSQLQIINLS 677
+ ++ + + N+ + L+ + LS
Sbjct: 109 LENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLS 147
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 39.0 bits (91), Expect = 0.001
Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 13/82 (15%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNA-----HLSSLPVGGFDPLKKLEVLD- 478
T+L L+ NNL L P +P L +L N L L ++ D
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDL 92
Query: 479 -------LAATGLKSIPQYQFD 493
L L + + +
Sbjct: 93 RCVAPPALRGRLLPYLAEDELR 114
Score = 38.2 bits (89), Expect = 0.001
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHN 252
V+ L L+ N + A+ G+L L + N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 38.2 bits (89), Expect = 0.002
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
+ L L N+LT +P + L L L N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 36.3 bits (84), Expect = 0.008
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 623 LQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
E+ L+ N L + LP LR +L N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 35.2 bits (81), Expect = 0.017
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
+ T L L+ NN+ L G L LP+++ L N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 34.8 bits (80), Expect = 0.025
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 292 LERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
++L GN LT + G + L + +LG N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 33.2 bits (76), Expect = 0.083
Identities = 12/38 (31%), Positives = 14/38 (36%)
Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFN 610
EL L N LT L P L+T L N +
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68
Score = 33.2 bits (76), Expect = 0.096
Identities = 17/79 (21%), Positives = 23/79 (29%), Gaps = 9/79 (11%)
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN------HL 508
R +SLP L L L ++P D L L+ L N L
Sbjct: 17 RRGLTWASLPTAFPVDT---TELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73
Query: 509 TEIPEMMFKNLLNLTYLDL 527
+ + Y DL
Sbjct: 74 VPLRAWLAGRPERAPYRDL 92
Score = 31.7 bits (72), Expect = 0.26
Identities = 14/63 (22%), Positives = 18/63 (28%), Gaps = 13/63 (20%)
Query: 534 NLRVGSL-YGLP-SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN------EL 585
L SL P L L+ N LT + +L +L N L
Sbjct: 19 GLTWASLPTAFPVDTTELVLTGNNLTALPPGLLD-----ALPALRTAHLGANPWRCDCRL 73
Query: 586 TYL 588
L
Sbjct: 74 VPL 76
Score = 30.5 bits (69), Expect = 0.84
Identities = 9/39 (23%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHN 433
T L + N +T L L L L N
Sbjct: 27 TAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 28.6 bits (64), Expect = 3.3
Identities = 20/104 (19%), Positives = 25/104 (24%), Gaps = 39/104 (37%)
Query: 96 PCDTMIDDFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILP 155
PC P PC C + +DC R + LP
Sbjct: 1 PC-------PAPCSC-----AGTLVDCGR----------------------RGLTWASLP 26
Query: 156 MQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADN 199
L +GN L L L L+ L N
Sbjct: 27 TAFPVD----TTELVLTGNNLTALPPGLLD-ALPALRTAHLGAN 65
Score = 28.2 bits (63), Expect = 4.5
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 647 LRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679
+L L NN+ A+ L+ +L N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 39.1 bits (91), Expect = 0.004
Identities = 29/197 (14%), Positives = 67/197 (34%), Gaps = 22/197 (11%)
Query: 495 LLNLKYLCLAHNHLTEIP-EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSF 553
++++ L+++ + + L L L + + V +L ++ RL+LS
Sbjct: 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151
Query: 554 NKLTTFKGDYFNTKSKPNTSSLEELNLN------NNELTYLFPSSFTIHSKLKTLKLAFN 607
+ S L+ELNL+ + + L L+
Sbjct: 152 CSGFSEFALQTLLSSCSR---LDELNLSWCFDFTEKHVQVAVAHV---SETITQLNLSGY 205
Query: 608 KFN---YFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYL---PRLRKLNLNN-NNIDAI 660
+ N L+ L +DLS++ + + + + L+ L+L+ +I
Sbjct: 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVM--LKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263
Query: 661 SETCFFNSSQLQIINLS 677
+ L+ + +
Sbjct: 264 TLLELGEIPTLKTLQVF 280
Score = 33.7 bits (77), Expect = 0.18
Identities = 40/214 (18%), Positives = 81/214 (37%), Gaps = 27/214 (12%)
Query: 353 NRLNKLNSDTFQGTHIT--IFSFFQDFQKLKSLDLNGNFLINLESTGLED------TLDN 404
++ +KL + + +G ++ I + L L+L+G L+ LD
Sbjct: 115 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG--CSGFSEFALQTLLSSCSRLDE 172
Query: 405 LNVRD-NQITTLSSSAL---NYKLLTKLDLSHNNLKELEPTAF----TNVPTLLHLNLSR 456
LN+ T + +T+L+LS K L+ + P L+HL+LS
Sbjct: 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR-KNLQKSDLSTLVRRCPNLVHLDLSD 231
Query: 457 NAHLSSLPVGGFDPLKKLEVLDLAA------TGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
+ L + F L L+ L L+ L + + + L + + L
Sbjct: 232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG-IVPDGTLQL 290
Query: 511 IPEMMFKNLLNLTYL-DLSNNNIVNLRVGSLYGL 543
+ E + +N ++ ++ I N + ++G+
Sbjct: 291 LKEALPHLQINCSHFTTIARPTIGNKKNQEIWGI 324
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.15
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 679 NRLEKLPERLFNTFLYTNYDMAPNLVFQSHL 709
L+KL L LY + D AP L ++ +
Sbjct: 20 QALKKLQASLK---LYAD-DSAPALAIKATM 46
Score = 29.1 bits (64), Expect = 2.8
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 16/42 (38%)
Query: 174 NALRRL--SDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSE 213
AL++L S KL++ D+ A L ++ +T E
Sbjct: 20 QALKKLQASLKLYAD--DS------APAL---AIK---ATME 47
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 32.5 bits (74), Expect = 0.30
Identities = 25/185 (13%), Positives = 65/185 (35%), Gaps = 36/185 (19%)
Query: 513 EMMFKNLLNLTYLDLSN-NNIVNLRVGSLYGL----PSMKRLDLSFNKLTTFKGDYFNTK 567
+ ++ +L ++++N + R+ SL +++ L+ ++ +
Sbjct: 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIEL 93
Query: 568 SKPNTSSLEELNLNNNELTY----LFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYL 623
+ + SL LN+ +N LT S + + K + + +LG
Sbjct: 94 IETSP-SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS------VLGNQVE 146
Query: 624 QEID--LSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRL 681
++ + N+ L ++ ++ +++A S+ N RL
Sbjct: 147 MDMMMAIEENE-------------SLLRVGISFASMEARHRV-----SEALERNYERVRL 188
Query: 682 EKLPE 686
+L +
Sbjct: 189 RRLGK 193
Score = 30.6 bits (69), Expect = 1.1
Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 23/164 (14%)
Query: 413 TTLSSSALNYKLLTKLDLSHN--NLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGF-D 469
TT + +Y D N +++ + L +N++ +S + +
Sbjct: 5 TTFNGIMQSYVPRIVPDEPDNDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIE 64
Query: 470 PLKK---LEVLDLAATGLKSIPQYQFDELL----NLKYLCLAHNHLTE-----IPEMMFK 517
+E LA T + EL+ +L+ L + N LT +
Sbjct: 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLV 124
Query: 518 NLLNLTYLDLSNNNIVNLRVGSLYGL-------PSMKRLDLSFN 554
++ N L + S+ R+ +SF
Sbjct: 125 T-QSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167
Score = 29.4 bits (66), Expect = 2.8
Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 13/76 (17%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGL-VN--LRILDLSDNQI-----KAIEEGILKGC 241
+++ LA+ DS + + + LR+L++ N + +
Sbjct: 71 HIEKFSLANTAISDS----EARGLIELIETSPSLRVLNVESNFLTPELLARLLRS-TLVT 125
Query: 242 DNLLELRMDHNRFTSI 257
+++E + D+ R + +
Sbjct: 126 QSIVEFKADNQRQSVL 141
Score = 27.9 bits (62), Expect = 9.8
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 406 NVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNV----PTLLHLNLSRN 457
V +I +L +A N K + K L++ + + E + P+L LN+ N
Sbjct: 53 RVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108
>3ipj_A PTS system, iiabc component; iiabc component,PSI, structural
genomics, MCSG, structure initiative; 1.20A {Clostridium
difficile}
Length = 95
Score = 29.2 bits (66), Expect = 1.4
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 9/37 (24%)
Query: 646 RLRKLNLNNN---NIDAISE-----TCFFNSSQLQII 674
RLR + + + N + + FF S Q QII
Sbjct: 31 RLR-VMVKDREIINDKKVEKVDEVKGVFFTSGQYQII 66
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 30.3 bits (69), Expect = 1.6
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 21/105 (20%)
Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGL-VN--LRILDLSDNQI-----KAIEEGILKGC 241
+++ + D + + L VN L+ L++ N I A+ E L+
Sbjct: 66 YVKKFSIVGTRSNDPVAFALA----EMLKVNNTLKSLNVESNFISGSGILALVEA-LQSN 120
Query: 242 DNLLELRMDHNRFT-------SIPSVSLNGPRALRILSMAYNRIG 279
+L+ELR+D+ I + L L + + G
Sbjct: 121 TSLIELRIDNQSQPLGNNVEMEI-ANMLEKNTTLLKFGYHFTQQG 164
Score = 29.6 bits (67), Expect = 2.6
Identities = 17/122 (13%), Positives = 33/122 (27%), Gaps = 39/122 (31%)
Query: 425 LTKLDLSHNNLKELEPTAFTNV----PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLA 480
+ K + + A + TL LN+ N ++
Sbjct: 67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN--------------------FIS 106
Query: 481 ATGLKSIPQYQFDELLN---LKYLCLAHNHLT-------EIPEMMFKNLLNLTYLDLSNN 530
+G+ ++ + L + L L + + EI M+ KN L
Sbjct: 107 GSGILAL----VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT-TLLKFGYHFT 161
Query: 531 NI 532
Sbjct: 162 QQ 163
Score = 29.2 bits (66), Expect = 2.9
Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 31/141 (21%)
Query: 567 KSKPNTSSLEELNLNN-NELT----YLFPSSFTIHSKLKTLKLAFNKFNYF-PKELILGL 620
+ + N LEE+NLNN + + ++ +K + + N L L
Sbjct: 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML 89
Query: 621 ---SYLQEIDLSNNQLKTIDDYDYG------YLPR---LRKLNLNNNNID-------AIS 661
+ L+ +++ +N + G L L +L ++N + I+
Sbjct: 90 KVNNTLKSLNVESNFIS-----GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144
Query: 662 ETCFFNSSQLQIINLSFNRLE 682
N++ L F +
Sbjct: 145 NMLEKNTT-LLKFGYHFTQQG 164
Score = 28.4 bits (64), Expect = 5.7
Identities = 16/132 (12%), Positives = 41/132 (31%), Gaps = 18/132 (13%)
Query: 544 PSMKRLDLS-FNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELT----YLFPSSFTIHSK 598
P ++ ++L+ + K NT +++ ++ + +++
Sbjct: 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTY-VKKFSIVGTRSNDPVAFALAEMLKVNNT 94
Query: 599 LKTLKLAFNKF-NYFPKELILGLSY---LQEIDLSNNQLKTIDDYDYGYL-------PRL 647
LK+L + N L+ L L E+ + N + + + + L
Sbjct: 95 LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTL 153
Query: 648 RKLNLNNNNIDA 659
K +
Sbjct: 154 LKFGYHFTQQGP 165
Score = 27.6 bits (62), Expect = 9.6
Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 25/99 (25%)
Query: 380 LKSLDLNGNFLINLESTGLED---------TLDNLNVRDNQITT-----LSSSALNYKLL 425
+K + G TL +LNV N I+ L + + L
Sbjct: 67 VKKFSIVGT---RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSL 123
Query: 426 TKLDLSHNNL-------KELEPTAFTNVPTLLHLNLSRN 457
+L + + + E+ N TLL
Sbjct: 124 IELRIDNQSQPLGNNVEMEIANMLEKN-TTLLKFGYHFT 161
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 29.7 bits (67), Expect = 3.7
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 20/103 (19%)
Query: 345 IHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDN 404
I++ N Y LNK DT +GT I + S KS+D++ N + TG +
Sbjct: 532 INLTNHSYFNLNKPYGDTIEGTEIMVRSK-------KSVDVDKNMI----PTGNIVDREI 580
Query: 405 LNVRDNQITTLSSSALNY---------KLLTKLDLSHNNLKEL 438
+ T L + ++++ +N L +
Sbjct: 581 ATFNSTKPTVLGPKNPQFDCCFVVDENAKPSQINTLNNELTLI 623
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.406
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,648,001
Number of extensions: 636819
Number of successful extensions: 10612
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1805
Number of HSP's successfully gapped: 663
Length of query: 719
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 619
Effective length of database: 3,909,693
Effective search space: 2420099967
Effective search space used: 2420099967
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)