BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16111
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|C Chain C, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|D Chain D, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|B Chain B, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
Length = 462
Score = 74.3 bits (181), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/104 (36%), Positives = 59/104 (56%)
Query: 27 WTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLK 86
W G F + + +FN S++ D L+RED+ + H ML ++ ++ E I+K L
Sbjct: 6 WGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKGLD 65
Query: 87 DIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
IE +IE G + ELED+HMN+E+ L +G G KLHT ++
Sbjct: 66 RIEEEIEAGTFPWREELEDVHMNLEARLTELVGPPGGKLHTARS 109
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
pdb|1TJ7|B Chain B, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
Length = 457
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85
LW G F Q+ ++ +QFN+S+ D L +DI GS+A L ++ +++ + + L
Sbjct: 3 LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEAL 62
Query: 86 KDIEYDIEHGKVE-LKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
+ D+ + L+ + EDIH +E +LI ++G +G+KLHTG++
Sbjct: 63 NVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKKLHTGRS 108
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJW|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
Length = 474
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+LW G F S + +++ N SI+ D+ L DI GS+A+ L + I+ + + E I+
Sbjct: 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG 68
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
L+ I + G +K EDIH E L IG++ KLHTG++
Sbjct: 69 LEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRS 114
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|B Chain B, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|C Chain C, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|D Chain D, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
Length = 474
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+LW G F S + +++ N SI+ D+ L DI GS+A+ L + I+ + + E I+
Sbjct: 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG 68
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
L+ I + G +K EDIH E L IG++ KLHTG++
Sbjct: 69 LEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRS 114
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+LW G F S + +++ N SI+ D+ L DI GS+A+ L + I+ + + E I+
Sbjct: 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG 68
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
L+ I + G +K EDIH E L IG++ KLHTG++
Sbjct: 69 LEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRS 114
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+LW G F S + +++ N SI+ D+ L DI GS+A+ L + I+ + + E I+
Sbjct: 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG 68
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
L+ I + G +K EDIH E L IG++ KLHTG++
Sbjct: 69 LEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRS 114
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+LW G F S + +++ N SI+ D+ L DI GS+A+ L + I+ + + E I+
Sbjct: 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG 68
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
L+ I + G +K EDI+ E L IG++ KLHTG++
Sbjct: 69 LEKISEEWSKGVFVVKQSDEDINTANERRLKELIGDIAGKLHTGRS 114
>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase
pdb|1AOS|B Chain B, Human Argininosuccinate Lyase
Length = 464
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 57/109 (52%)
Query: 22 ELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELI 81
E ++LW G F +++ +++FN SI+ D L+ D+ GS A+ L + ++ + + + I
Sbjct: 4 ESQKLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQI 63
Query: 82 VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
+ L + + G +L EDIH E L IG KLHTG++
Sbjct: 64 LHGLDKVAEEWAQGTFKLNSNDEDIHTANERRLKELIGATAGKLHTGRS 112
>pdb|1K62|A Chain A, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
pdb|1K62|B Chain B, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
Length = 464
Score = 57.0 bits (136), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 56/109 (51%)
Query: 22 ELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELI 81
E +LW G F +++ +++FN SI+ D L+ D+ GS A+ L + ++ + + + I
Sbjct: 4 ESGKLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQI 63
Query: 82 VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
+ L + + G +L EDIH E L IG KLHTG++
Sbjct: 64 LHGLDKVAEEWAQGTFKLNSNDEDIHTANERRLKELIGATAGKLHTGRS 112
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|B Chain B, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|C Chain C, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|D Chain D, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U16|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm) In Complex With Sulfate
Length = 472
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+L G F S + +++ N SI+ D+ L DI SIA+ L + I+ + + E I+
Sbjct: 7 KLMGGRFVGSTDPIMEKLNSSIAYDQRLSEVDIQASIAYAKALEKAGILTKTELEKILSG 66
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
L+ I + G +K EDIH E L IG++ KLHTG++
Sbjct: 67 LEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRS 112
>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+L G F S + +Q + SIS ++ L DI SIA+ L + I+ + + E I+
Sbjct: 7 KLMGGRFVGSTDPIMQMLSTSISTEQRLSEVDIQASIAYAKALEKAGILTKTELEKILSG 66
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
L+ I ++ G + + EDI E L IG++ KLHTG++
Sbjct: 67 LEKISEELSKGVIVVTQSDEDIQTANERRLKELIGDIAGKLHTGRS 112
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 447
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%)
Query: 39 LQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVE 98
+++ N SI+ D+ L DI GS+A+ L + I+ + + E I+ L+ I + G
Sbjct: 5 MEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFV 64
Query: 99 LKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
+K EDIH E L IG++ KL+TG++
Sbjct: 65 VKQSDEDIHTANERRLKELIGDIAGKLNTGRS 96
>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|B Chain B, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|C Chain C, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|D Chain D, Crystal Structrue Of Goose Delta Crystallin
Length = 465
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+L G F S + +Q + S+S ++ L DI SIA+ L + I+ + + E I+
Sbjct: 6 KLMGGRFVGSTDPIMQMLSTSMSTEQRLSEVDIQASIAYAKALEKAGILTKTELEKILSG 65
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
L+ I + G + EDIH E L IG++ KL+TG++
Sbjct: 66 LEKISEEWSKGVFVVTQSDEDIHTANERRLKELIGDIAGKLNTGRS 111
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+L G F S++ ++ + SIS ++ L DI S+A+ L + +I+ + + E I+
Sbjct: 7 KLLGGRFVGSVDPIMEILSSSISTEQRLTEVDIQASMAYAKALEKASILTKTELEKILSG 66
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
L+ I + G + + EDI IE L IG++ KL TG++
Sbjct: 67 LEKISEESSKGVLVMTQSDEDIQTAIERRLKELIGDIAGKLQTGRS 112
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Asn
Length = 353
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 10 EEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGE 69
EG T P+ L +W F S+ LQQF + ED++G+++H++ LGE
Sbjct: 253 SEGHDPTMTHPQFLN-VWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLS-LGE 310
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Ser
pdb|1ZDG|A Chain A, Ser159 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 10 EEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGE 69
EG T P+ L +W F S+ LQQF + ED++G+++H++ LGE
Sbjct: 253 SEGHDPTMTHPQFLN-VWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLS-LGE 310
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin
pdb|1ZDF|A Chain A, Ser162 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 10 EEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGE 69
EG T P+ L +W F S+ LQQF + ED++G+++H++ LGE
Sbjct: 253 SEGHDPTMTHPQFLN-VWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLS-LGE 310
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|B Chain B, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|C Chain C, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|D Chain D, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|E Chain E, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|F Chain F, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|G Chain G, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|H Chain H, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|I Chain I, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|J Chain J, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 339
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 10 EEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGE 69
EG T P+ L +W F S+ LQQF + ED++G+++H++ LGE
Sbjct: 239 SEGHDPTMTHPQFLN-VWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLS-LGE 296
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed
With Udp- Glucose And Manganese
pdb|1LL3|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 333
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 10 EEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGE 69
EG T P+ L +W F S+ LQQF + ED++G+++H++ LGE
Sbjct: 233 SEGHDPTMTHPQFLN-VWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLS-LGE 290
>pdb|3E20|C Chain C, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|B Chain B, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|H Chain H, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|K Chain K, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 441
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 57 IAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHG---KVELKVE-LEDIHMNIES 112
+AGS T LG+ ++ D++ + I+KT+ D+ Y + G +EL + L ++ E
Sbjct: 231 LAGSADFKTELGQSDLFDQRLQSRIIKTV-DVSYGGDAGFNQAIELAADTLSNVKYVQEK 289
Query: 113 ELIRRI 118
+LI+R
Sbjct: 290 KLIQRF 295
>pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|B Chain B, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|C Chain C, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|D Chain D, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|E Chain E, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|F Chain F, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|G Chain G, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|H Chain H, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
Length = 345
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 88 IEYDIEHGKVELKVELEDIHMNIESELIRRIGN 120
I+YD HGK + VE + H+ ++ ++IR + N
Sbjct: 47 IKYDTVHGKFDGTVEAFEDHLLVDGKMIRLLNN 79
>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC4|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
Length = 330
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 88 IEYDIEHGKVELKVELEDIHMNIESELIR 116
++YD HG+ + VE++D H+ + + IR
Sbjct: 44 LKYDSTHGRFDGTVEVKDGHLIVNGKKIR 72
>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAD|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1DC3|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC3|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC5|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC5|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC6|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes.
pdb|1DC6|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
Length = 330
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 88 IEYDIEHGKVELKVELEDIHMNIESELIR 116
++YD HG+ + VE++D H+ + + IR
Sbjct: 44 LKYDSTHGRFDGTVEVKDGHLIVNGKKIR 72
>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAE|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
Length = 330
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 88 IEYDIEHGKVELKVELEDIHMNIESELIR 116
++YD HG+ + VE++D H+ + + IR
Sbjct: 44 LKYDSTHGRFDGTVEVKDGHLIVNGKKIR 72
>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of
Glyceraldehyde 3- Phosphate Dehydrogenase From
Escherichia Coli
Length = 331
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 88 IEYDIEHGKVELKVELEDIHMNIESELIR 116
++YD HG+ + VE++D H+ + + IR
Sbjct: 45 LKYDSTHGRFDGTVEVKDGHLIVNGKKIR 73
>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 331
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 88 IEYDIEHGKVELKVELEDIHMNIESELIR 116
++YD HG+ + VE++D H+ + + IR
Sbjct: 45 LKYDSTHGRFDGTVEVKDGHLIVNGKKIR 73
>pdb|3AFO|A Chain A, Crystal Structure Of Yeast Nadh Kinase Complexed With
Nadh
pdb|3AFO|B Chain B, Crystal Structure Of Yeast Nadh Kinase Complexed With
Nadh
Length = 388
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 24 KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIA 62
K+ WT +++M EF+ +ES V+ + D+A I+
Sbjct: 48 KKPWTPSTREAMVEFITHLHESYPEVNVIVQPDVAEEIS 86
>pdb|3VNI|A Chain A, Crystal Structures Of D-Psicose 3-Epimerase From
Clostridium Cellulolyticum H10 And Its Complex With
Ketohexose Sugars
pdb|3VNI|B Chain B, Crystal Structures Of D-Psicose 3-Epimerase From
Clostridium Cellulolyticum H10 And Its Complex With
Ketohexose Sugars
pdb|3VNI|C Chain C, Crystal Structures Of D-Psicose 3-Epimerase From
Clostridium Cellulolyticum H10 And Its Complex With
Ketohexose Sugars
pdb|3VNI|D Chain D, Crystal Structures Of D-Psicose 3-Epimerase From
Clostridium Cellulolyticum H10 And Its Complex With
Ketohexose Sugars
pdb|3VNJ|A Chain A, Crystal Structures Of D-Psicose 3-Epimerase With D-Psicose
From Clostridium Cellulolyticum H10
pdb|3VNJ|B Chain B, Crystal Structures Of D-Psicose 3-Epimerase With D-Psicose
From Clostridium Cellulolyticum H10
pdb|3VNJ|C Chain C, Crystal Structures Of D-Psicose 3-Epimerase With D-Psicose
From Clostridium Cellulolyticum H10
pdb|3VNJ|D Chain D, Crystal Structures Of D-Psicose 3-Epimerase With D-Psicose
From Clostridium Cellulolyticum H10
pdb|3VNL|A Chain A, Crystal Structures Of D-Psicose 3-Epimerase With
D-Tagatose From Clostridium Cellulolyticum H10
pdb|3VNL|B Chain B, Crystal Structures Of D-Psicose 3-Epimerase With
D-Tagatose From Clostridium Cellulolyticum H10
pdb|3VNL|C Chain C, Crystal Structures Of D-Psicose 3-Epimerase With
D-Tagatose From Clostridium Cellulolyticum H10
pdb|3VNL|D Chain D, Crystal Structures Of D-Psicose 3-Epimerase With
D-Tagatose From Clostridium Cellulolyticum H10
Length = 294
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 92 IEHGKVELKVELEDIHMNIESE----LIRRIGNVGRKLHTGKT 130
++H V KV L+ HMNIE + IR G+ LHTG+
Sbjct: 174 VDHNNV--KVMLDTFHMNIEEDSIGGAIRTAGSYLGHLHTGEC 214
>pdb|3VNK|A Chain A, Crystal Structures Of D-Psicose 3-Epimerase With
D-Fructose From Clostridium Cellulolyticum H10
pdb|3VNK|B Chain B, Crystal Structures Of D-Psicose 3-Epimerase With
D-Fructose From Clostridium Cellulolyticum H10
pdb|3VNK|C Chain C, Crystal Structures Of D-Psicose 3-Epimerase With
D-Fructose From Clostridium Cellulolyticum H10
pdb|3VNK|D Chain D, Crystal Structures Of D-Psicose 3-Epimerase With
D-Fructose From Clostridium Cellulolyticum H10
pdb|3VNM|A Chain A, Crystal Structures Of D-Psicose 3-Epimerase With D-Sorbose
From Clostridium Cellulolyticum H10
pdb|3VNM|B Chain B, Crystal Structures Of D-Psicose 3-Epimerase With D-Sorbose
From Clostridium Cellulolyticum H10
pdb|3VNM|C Chain C, Crystal Structures Of D-Psicose 3-Epimerase With D-Sorbose
From Clostridium Cellulolyticum H10
pdb|3VNM|D Chain D, Crystal Structures Of D-Psicose 3-Epimerase With D-Sorbose
From Clostridium Cellulolyticum H10
Length = 293
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 92 IEHGKVELKVELEDIHMNIESE----LIRRIGNVGRKLHTGKT 130
++H V KV L+ HMNIE + IR G+ LHTG+
Sbjct: 173 VDHNNV--KVMLDTFHMNIEEDSIGGAIRTAGSYLGHLHTGEC 213
>pdb|3QEF|A Chain A, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QEF|B Chain B, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
Length = 307
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 41 QFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLK 86
Q+ S+S+DE+ Y D G+I + M E + + E + K K
Sbjct: 265 QYRRSVSIDELFYNPD--GTIKRIVMTTE-GVAPNKSPERVKKAAK 307
>pdb|3QEE|A Chain A, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QEE|B Chain B, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
Length = 307
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 41 QFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLK 86
Q+ S+S+DE+ Y D G+I + M E + + E + K K
Sbjct: 265 QYRRSVSIDELFYNPD--GTIKRIVMTTE-GVAPNKSPERVKKAAK 307
>pdb|3TTH|A Chain A, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|B Chain B, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|C Chain C, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|D Chain D, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|E Chain E, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|F Chain F, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|G Chain G, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|H Chain H, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|I Chain I, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|J Chain J, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|K Chain K, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|L Chain L, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
Length = 170
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 37 EFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGK 96
+F+ + N ++S+ + E S + L ++I D+ ++ I+K LKD + G
Sbjct: 18 KFVHELNNNLSIXSYWFEEPYE-SYRELEDLHIKHIHDQSERRFIIKDLKDNKV----GL 72
Query: 97 VELKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
VEL E++ IH E +I G G+ T T
Sbjct: 73 VEL-TEIDFIHRRCEFAIIISPGEEGKGYATEAT 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.136 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,125,988
Number of Sequences: 62578
Number of extensions: 160751
Number of successful extensions: 409
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 378
Number of HSP's gapped (non-prelim): 40
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)