Query psy16111
Match_columns 137
No_of_seqs 119 out of 1060
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 21:10:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16111.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16111hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0165 ArgH Argininosuccinate 100.0 1.4E-39 3E-44 281.7 9.4 114 24-137 3-116 (459)
2 KOG1316|consensus 100.0 1.3E-37 2.8E-42 262.0 8.8 113 25-137 7-119 (464)
3 PRK06389 argininosuccinate lya 100.0 3.1E-36 6.8E-41 260.2 9.5 109 25-137 2-112 (434)
4 PLN02646 argininosuccinate lya 100.0 3.4E-32 7.3E-37 237.1 10.5 113 25-137 17-129 (474)
5 TIGR00838 argH argininosuccina 99.9 1.6E-27 3.4E-32 206.3 9.8 112 26-137 1-113 (455)
6 PRK00855 argininosuccinate lya 99.9 6.7E-27 1.5E-31 202.6 9.0 113 25-137 5-117 (459)
7 PRK06705 argininosuccinate lya 99.9 9.9E-26 2.2E-30 197.7 9.4 119 17-137 2-122 (502)
8 PRK04833 argininosuccinate lya 99.9 1.6E-25 3.5E-30 194.1 10.5 113 25-137 2-115 (455)
9 PRK12308 bifunctional arginino 99.9 4.8E-25 1E-29 196.6 10.5 113 25-137 2-115 (614)
10 PRK02186 argininosuccinate lya 99.8 1.3E-19 2.7E-24 167.4 8.0 108 29-137 411-522 (887)
11 cd01359 Argininosuccinate_lyas 99.8 7.4E-19 1.6E-23 151.2 7.8 93 45-137 1-93 (435)
12 PRK14515 aspartate ammonia-lya 99.8 5.6E-19 1.2E-23 154.6 7.1 109 25-137 27-153 (479)
13 PRK00485 fumC fumarate hydrata 99.7 3.3E-18 7.1E-23 148.9 6.1 109 25-137 20-146 (464)
14 PF00206 Lyase_1: Lyase; Inte 99.7 2E-17 4.4E-22 136.8 5.4 109 29-137 1-117 (312)
15 PRK12425 fumarate hydratase; P 99.7 4.2E-17 9.2E-22 142.2 7.6 100 38-137 27-144 (464)
16 cd01334 Lyase_I Lyase class I 99.7 3.4E-17 7.3E-22 136.0 6.5 85 53-137 1-86 (325)
17 PLN00134 fumarate hydratase; P 99.6 3.6E-16 7.8E-21 136.2 7.4 101 37-137 18-138 (458)
18 PRK12273 aspA aspartate ammoni 99.6 7.5E-16 1.6E-20 134.6 7.2 100 38-137 30-149 (472)
19 cd01357 Aspartase Aspartase. T 99.6 6.3E-16 1.4E-20 134.3 6.7 99 39-137 26-142 (450)
20 cd01596 Aspartase_like asparta 99.6 4.8E-16 1E-20 135.2 5.9 109 25-137 16-142 (450)
21 cd01595 Adenylsuccinate_lyase_ 99.6 3.4E-16 7.3E-21 132.9 3.6 87 49-137 7-95 (381)
22 cd01362 Fumarase_classII Class 99.6 1.7E-15 3.6E-20 131.9 5.6 109 25-137 16-142 (455)
23 cd01360 Adenylsuccinate_lyase_ 99.5 6.9E-15 1.5E-19 125.4 5.4 85 49-137 13-97 (387)
24 cd01597 pCLME prokaryotic 3-ca 99.5 2.7E-15 5.8E-20 129.4 2.7 87 49-137 17-105 (437)
25 PRK13353 aspartate ammonia-lya 99.5 1.3E-14 2.9E-19 126.8 6.6 100 38-137 30-147 (473)
26 TIGR02426 protocat_pcaB 3-carb 99.5 6.8E-15 1.5E-19 123.6 3.2 91 46-137 14-105 (338)
27 PRK06390 adenylosuccinate lyas 99.5 1.5E-14 3.3E-19 125.5 3.4 87 49-137 21-108 (451)
28 PRK08540 adenylosuccinate lyas 99.4 4.7E-14 1E-18 122.2 3.1 86 49-137 21-109 (449)
29 TIGR00839 aspA aspartate ammon 99.4 1.4E-13 3E-18 120.4 5.9 100 38-137 25-145 (468)
30 TIGR00928 purB adenylosuccinat 99.4 2E-13 4.2E-18 117.9 5.8 81 49-137 16-103 (435)
31 TIGR00979 fumC_II fumarate hyd 99.4 6.4E-13 1.4E-17 115.9 6.1 109 25-137 17-143 (458)
32 PRK08470 adenylosuccinate lyas 99.3 2E-12 4.4E-17 112.2 5.1 84 49-137 16-100 (442)
33 PRK09285 adenylosuccinate lyas 99.1 3.1E-11 6.6E-16 105.4 4.0 104 25-137 10-129 (456)
34 PRK05975 3-carboxy-cis,cis-muc 99.0 2.7E-10 5.9E-15 96.4 3.8 87 49-137 26-114 (351)
35 PRK07492 adenylosuccinate lyas 98.7 2.1E-08 4.5E-13 87.2 6.3 79 51-137 18-103 (435)
36 PRK07380 adenylosuccinate lyas 98.5 1.4E-07 3.1E-12 81.9 6.3 81 49-137 16-100 (431)
37 cd01598 PurB PurB_like adenylo 98.4 1.4E-07 3.1E-12 82.0 3.0 81 49-137 7-107 (425)
38 cd03302 Adenylsuccinate_lyase_ 98.2 6.4E-06 1.4E-10 71.7 7.4 95 28-137 2-102 (436)
39 PRK09053 3-carboxy-cis,cis-muc 98.0 1.7E-05 3.8E-10 69.1 7.6 102 25-137 6-114 (452)
40 PLN02848 adenylosuccinate lyas 98.0 9.3E-06 2E-10 71.3 4.7 102 27-137 15-132 (458)
41 COG0015 PurB Adenylosuccinate 95.9 0.034 7.4E-07 49.1 7.7 80 49-136 16-103 (438)
42 cd01594 Lyase_I_like Lyase cla 92.2 0.15 3.3E-06 39.5 3.2 14 54-67 2-15 (231)
43 PF10925 DUF2680: Protein of u 81.4 10 0.00023 24.5 6.4 45 51-95 11-55 (59)
44 PF09851 SHOCT: Short C-termin 74.0 8.8 0.00019 21.5 3.9 27 60-86 4-30 (31)
45 PF07408 DUF1507: Protein of u 70.7 13 0.00028 26.3 4.8 35 48-87 44-78 (90)
46 COG0114 FumC Fumarase [Energy 60.4 58 0.0013 29.2 8.0 108 25-136 19-144 (462)
47 PF14363 AAA_assoc: Domain ass 60.0 25 0.00055 24.4 4.8 63 72-134 1-69 (98)
48 PRK13666 hypothetical protein; 56.5 23 0.00049 25.1 4.0 36 48-88 46-81 (92)
49 PF09920 DUF2150: Uncharacteri 49.3 1.1E+02 0.0024 24.4 7.3 60 53-118 39-98 (190)
50 PF01756 ACOX: Acyl-CoA oxidas 49.2 90 0.0019 23.7 6.7 59 59-117 92-165 (187)
51 PF14164 YqzH: YqzH-like prote 40.5 83 0.0018 20.9 4.5 39 69-116 22-60 (64)
52 PF03683 UPF0175: Uncharacteri 37.8 1E+02 0.0023 20.3 4.9 52 60-111 22-74 (76)
53 PRK01026 tetrahydromethanopter 29.7 1.1E+02 0.0024 21.0 3.9 22 70-91 9-30 (77)
54 PF07647 SAM_2: SAM domain (St 29.1 80 0.0017 19.5 3.0 24 66-89 43-66 (66)
55 KOG3520|consensus 29.1 2.3E+02 0.005 28.5 7.3 41 50-90 392-443 (1167)
56 PF07812 TfuA: TfuA-like prote 28.8 1E+02 0.0022 22.8 3.9 29 61-89 87-115 (120)
57 PF09925 DUF2157: Predicted me 28.1 63 0.0014 23.7 2.7 21 66-86 3-23 (145)
58 PF10335 DUF294_C: Putative nu 27.1 1.2E+02 0.0026 22.2 4.1 30 60-89 64-93 (145)
59 PF11950 DUF3467: Protein of u 27.0 92 0.002 21.4 3.3 25 69-93 60-84 (92)
60 TIGR03282 methan_mark_13 putat 26.8 3.1E+02 0.0068 23.9 7.1 63 57-119 120-186 (352)
61 COG4838 Uncharacterized protei 26.1 1.4E+02 0.0031 20.8 4.0 37 49-90 47-83 (92)
62 PF04210 MtrG: Tetrahydrometha 25.9 1.4E+02 0.0031 20.1 3.8 20 72-91 8-27 (70)
63 TIGR01149 mtrG N5-methyltetrah 24.9 1.5E+02 0.0034 19.9 3.9 20 72-91 8-27 (70)
64 COG4064 MtrG Tetrahydromethano 24.4 2E+02 0.0044 19.5 4.4 21 71-91 10-30 (75)
65 PF10904 DUF2694: Protein of u 23.8 1.9E+02 0.0041 20.8 4.3 37 82-118 57-96 (101)
66 PF00536 SAM_1: SAM domain (St 23.7 1.4E+02 0.003 18.2 3.4 23 67-89 42-64 (64)
67 PRK10413 hydrogenase 2 accesso 23.5 1.1E+02 0.0024 21.0 3.0 22 70-91 57-78 (82)
68 TIGR03182 PDH_E1_alph_y pyruva 23.4 1.1E+02 0.0024 25.5 3.7 47 62-108 264-311 (315)
69 PF11848 DUF3368: Domain of un 23.0 1.4E+02 0.003 18.0 3.2 25 59-85 4-28 (48)
70 cd08785 CARD_CARD9-like Caspas 22.8 1.6E+02 0.0034 20.3 3.8 28 55-83 14-41 (86)
71 CHL00149 odpA pyruvate dehydro 22.6 1.4E+02 0.003 25.3 4.1 46 63-108 290-336 (341)
72 COG1458 Predicted DNA-binding 22.0 4.4E+02 0.0095 21.5 7.0 70 34-103 92-165 (221)
73 smart00454 SAM Sterile alpha m 22.0 1.5E+02 0.0034 17.5 3.3 26 65-90 42-67 (68)
74 PF07798 DUF1640: Protein of u 21.6 2.1E+02 0.0045 21.8 4.6 30 61-91 5-34 (177)
75 TIGR00074 hypC_hupF hydrogenas 20.4 1.7E+02 0.0036 19.8 3.4 22 70-91 50-71 (76)
76 PF11348 DUF3150: Protein of u 20.4 3.9E+02 0.0085 21.8 6.2 70 25-95 13-100 (257)
77 COG2306 Predicted RNA-binding 20.2 2.4E+02 0.0053 22.3 4.7 37 63-99 127-163 (183)
No 1
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-39 Score=281.66 Aligned_cols=114 Identities=42% Similarity=0.684 Sum_probs=112.1
Q ss_pred hhhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Q psy16111 24 KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVEL 103 (137)
Q Consensus 24 ~~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~ 103 (137)
+++|+|||.+++++.+..|+.|+.||++|++|||.+++||++||.++|||+++++++|+++|.+|.+++.+|+|.+++.+
T Consensus 3 ~~lwggRf~~~~~~~~~~~~~Si~~D~~l~~~di~~s~AH~~mL~~~Gii~~ee~~~I~~~L~~l~~e~~~g~~~~~~~~ 82 (459)
T COG0165 3 NKLWGGRFSGGPDPLVKEFNASISFDKRLAEYDIAGSIAHAKMLAKQGIITEEEAAKILEGLEELLEEIRAGKFELDPDD 82 (459)
T ss_pred CCCCCCCccCCCcHHHHHHhccchhHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCCccCCCcc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhCcccccccccccchhhcCC
Q psy16111 104 EDIHMNIESELIRRIGNVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 104 EDih~~iE~~L~e~~G~~gg~lHtGRSRNDqvat 137 (137)
||||++||++|++++|++||||||||||||||||
T Consensus 83 EDvH~aiE~~L~~~iG~~ggkLhtgRSRNDQVat 116 (459)
T COG0165 83 EDVHTAIEARLIERIGDVGGKLHTGRSRNDQVAT 116 (459)
T ss_pred ccHHHHHHHHHHHHHhhhhchhccccchhHHHHH
Confidence 9999999999999999999999999999999987
No 2
>KOG1316|consensus
Probab=100.00 E-value=1.3e-37 Score=262.05 Aligned_cols=113 Identities=33% Similarity=0.563 Sum_probs=112.1
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCc
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~E 104 (137)
|||||||.++++|.|+.|+.|++||++||+.|+.+++||+.+|+++|+|+++|..+|+++|++|+.+|..|+|.+.|..|
T Consensus 7 KlWGGRFtg~~dp~m~~fn~Si~ydk~ly~~Dv~gSkaya~~L~~~glit~~e~dkil~gLe~i~~ew~~~kf~~~p~dE 86 (464)
T KOG1316|consen 7 KLWGGRFTGAVDPLMEKFNASIPYDKRLYEADVDGSKAYAKALEKAGLITEAELDKILKGLEKIRREWAAGKFKLNPNDE 86 (464)
T ss_pred hhhccccCCCCCHHHHHhhccCccchHHHHhhhhhhHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCceEeCCCch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCcccccccccccchhhcCC
Q psy16111 105 DIHMNIESELIRRIGNVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 105 Dih~~iE~~L~e~~G~~gg~lHtGRSRNDqvat 137 (137)
|||++.|++|++.+|+.||||||||||||||+|
T Consensus 87 DvHtanErrL~eliG~~agKlHTgRSRNDQV~T 119 (464)
T KOG1316|consen 87 DVHTANERRLTELIGEIAGKLHTGRSRNDQVVT 119 (464)
T ss_pred hhhhHHHHHHHHHHhhhhhhcccCccccchhHH
Confidence 999999999999999999999999999999987
No 3
>PRK06389 argininosuccinate lyase; Provisional
Probab=100.00 E-value=3.1e-36 Score=260.21 Aligned_cols=109 Identities=24% Similarity=0.457 Sum_probs=104.9
Q ss_pred hhhhccCCCchH-HHHHHH-hhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCC
Q psy16111 25 QLWTGCFQQSMN-EFLQQF-NESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVE 102 (137)
Q Consensus 25 ~lw~gR~~~~~~-~~~~~f-~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~ 102 (137)
|+|+|||+++++ +.++.| +.|+.||++|++|||.+++||++||.++||||++++++|+++|.++.+ |.|.++++
T Consensus 2 klw~gr~~~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~gii~~~e~~~i~~~L~~i~~----~~~~~~~~ 77 (434)
T PRK06389 2 KIWSGGAGEELENDFYDNIVKDDIDADKNLIKYEIINLLAYHVALAQRRLITEKAPKCVINALIDIYK----NGIEIDLD 77 (434)
T ss_pred CCcccccCCCCchHHHHHHHCCCHHHHHHHHHHHHHHhHHHHHHHHHCCCCCHHHHHHHHHHHHHHHc----CCCcCCCC
Confidence 599999999999 779999 899999999999999999999999999999999999999999999965 78999999
Q ss_pred CchHHHHHHHHHHHHhCcccccccccccchhhcCC
Q psy16111 103 LEDIHMNIESELIRRIGNVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 103 ~EDih~~iE~~L~e~~G~~gg~lHtGRSRNDqvat 137 (137)
+||+|++||++|++++|++||||||||||||||+|
T Consensus 78 ~EDvh~~iE~~L~~~~G~~gg~lhtgRSRNDqvat 112 (434)
T PRK06389 78 LEDVHTAIENFVIRRCGDMFKNFRLFLSRNEQVHA 112 (434)
T ss_pred CCchHHHHHHHHHHHhchhhhhhcccCCHHHHHHH
Confidence 99999999999999999999999999999999986
No 4
>PLN02646 argininosuccinate lyase
Probab=99.97 E-value=3.4e-32 Score=237.07 Aligned_cols=113 Identities=42% Similarity=0.713 Sum_probs=109.9
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCc
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~E 104 (137)
++|+|||++++++.+.+|+.|+.||++|++|||.+++||++||.++||||++++++|+++|++|..+...|.|.++++.|
T Consensus 17 ~~w~~r~~~~~~~~~~~~~~s~~~d~~l~~~di~~~~Aha~~L~~~Gii~~~~a~~I~~al~~i~~~~~~~~f~~~~~~e 96 (474)
T PLN02646 17 KLWGGRFEEGVTPAVEKFNESISFDKRLYKEDIMGSKAHASMLAKQGIITDEDRDSILDGLDEIEKEIEAGKFEWRPDRE 96 (474)
T ss_pred hhhcCCCCCCccHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCCcCCCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999887779999999999
Q ss_pred hHHHHHHHHHHHHhCcccccccccccchhhcCC
Q psy16111 105 DIHMNIESELIRRIGNVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 105 Dih~~iE~~L~e~~G~~gg~lHtGRSRNDqvat 137 (137)
|+|++||++|++++|+.|+++|+||||||||+|
T Consensus 97 d~h~~iE~~L~e~~G~~g~~lH~grSrND~v~T 129 (474)
T PLN02646 97 DVHMNNEARLTELIGEPAKKLHTARSRNDQVAT 129 (474)
T ss_pred chHHHHHHHHHHHhchhhCcccCCCChhhHHHH
Confidence 999999999999999999999999999999976
No 5
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=99.94 E-value=1.6e-27 Score=206.26 Aligned_cols=112 Identities=39% Similarity=0.639 Sum_probs=107.5
Q ss_pred hhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCch
Q psy16111 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELED 105 (137)
Q Consensus 26 lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~ED 105 (137)
+|+|||++++++.+..|..|+.+|+++++|+|.+++||++||.++|+|++++++.|+++|+++......+.|.+++.+||
T Consensus 1 ~~~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Ah~~~L~~~G~l~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~d 80 (455)
T TIGR00838 1 LWGGRFTGGMDPRVAKFNASLSFDKELAEYDIEGSIAHTKMLKKAGILTEEEAAKIIEGLNELKEEGREGPFILDPDDED 80 (455)
T ss_pred CCCccCCCCccHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCcCCCCCcCc
Confidence 69999999999999999999999999999999999999999999999999999999999999998866688999999999
Q ss_pred HHHHHHHHHHHHhC-cccccccccccchhhcCC
Q psy16111 106 IHMNIESELIRRIG-NVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 106 ih~~iE~~L~e~~G-~~gg~lHtGRSRNDqvat 137 (137)
+|++||++|++++| +.|+++|+||||||++.|
T Consensus 81 ~~~~ie~~l~e~~g~~~g~~iH~g~SrnD~~~T 113 (455)
T TIGR00838 81 IHMAIERELIDRVGEDLGGKLHTGRSRNDQVAT 113 (455)
T ss_pred HHHHHHHHHHHHhCCCccCCccCCCChhhHHHH
Confidence 99999999999999 889999999999999876
No 6
>PRK00855 argininosuccinate lyase; Provisional
Probab=99.94 E-value=6.7e-27 Score=202.64 Aligned_cols=113 Identities=47% Similarity=0.753 Sum_probs=108.9
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCc
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~E 104 (137)
++|++||++++.+.+++|..|+.+|++++++++.+++||++||.++|+|+++++++|+++|+++......+.|.+++..|
T Consensus 5 ~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~Aha~~l~~~G~l~~~~a~~i~~al~~i~~~~~~~~~~~~~~~~ 84 (459)
T PRK00855 5 KLWGGRFSEGPDELVERFTASISFDKRLAEEDIAGSIAHARMLAKQGILSEEEAEKILAGLDEILEEIEAGKFEFSPELE 84 (459)
T ss_pred cccccCCCcchHHHHHHcccCccchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhcccCCcccCCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999876678999999999
Q ss_pred hHHHHHHHHHHHHhCcccccccccccchhhcCC
Q psy16111 105 DIHMNIESELIRRIGNVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 105 Dih~~iE~~L~e~~G~~gg~lHtGRSRNDqvat 137 (137)
|+|++||++|++++|+.|+++|+||||||++.|
T Consensus 85 d~~~~ie~~l~~~~g~~g~~iH~g~SrnD~~~T 117 (459)
T PRK00855 85 DIHMAIEARLTERIGDVGGKLHTGRSRNDQVAT 117 (459)
T ss_pred cHHHHHHHHHHHHhccccCcccCCCCHhhHHHH
Confidence 999999999999999889999999999999876
No 7
>PRK06705 argininosuccinate lyase; Provisional
Probab=99.93 E-value=9.9e-26 Score=197.70 Aligned_cols=119 Identities=16% Similarity=0.240 Sum_probs=106.1
Q ss_pred CCChhhhhhhhhccCCCchHHHHHHHhhCHHHHHHhHHHh-hhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcC
Q psy16111 17 PDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYRED-IAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHG 95 (137)
Q Consensus 17 ~~~~~~m~~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~d-i~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g 95 (137)
++.++.|.++|++||++++.+.+. |+.++.+|.+.+.++ +.+++||++||.++||||++++++|.++|.++.. +..+
T Consensus 2 ~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ve~Aha~~l~~~GiIp~e~a~~I~~al~~~~~-~~~~ 79 (502)
T PRK06705 2 KQSKEEFIKSEGADFPGKTYVDCV-LQHVFNFQRNYLLKDMFQVHKAHIVMLTEENLMKKEEAKFILHALKKVEE-IPEE 79 (502)
T ss_pred CCchhhhHHHhcccCCCCcchhHH-hhcccchhHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhh-cccC
Confidence 445555447999999999999999 999999987665555 6699999999999999999999999999998843 4778
Q ss_pred CcccCCCCchHHHHHHHHHHHHhC-cccccccccccchhhcCC
Q psy16111 96 KVELKVELEDIHMNIESELIRRIG-NVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 96 ~~~~~~~~EDih~~iE~~L~e~~G-~~gg~lHtGRSRNDqvat 137 (137)
.|.+++..||+|++||.++++.+| ++|||+|+|||||||++|
T Consensus 80 ~l~~~~~~edv~~~ie~~l~~~~G~~~g~~lH~GrSrnD~v~T 122 (502)
T PRK06705 80 QLLYTEQHEDLFFLVEHLISQEAKSDFVSNMHIGRSRNDMGVT 122 (502)
T ss_pred ccccCCCCCchHHHHHHHHHHhcCchhhccccCCCCHhhHHHH
Confidence 898999999999999999999998 699999999999999976
No 8
>PRK04833 argininosuccinate lyase; Provisional
Probab=99.92 E-value=1.6e-25 Score=194.14 Aligned_cols=113 Identities=29% Similarity=0.546 Sum_probs=105.2
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcC-CcccCCCC
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHG-KVELKVEL 103 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g-~~~~~~~~ 103 (137)
.+|++||+.++++.+..|..++.+|..|++|||.+++||+.||.++||||+++++.|+++|.++.++...+ .+.+++..
T Consensus 2 ~~~~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Aha~~l~e~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~ 81 (455)
T PRK04833 2 ALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTADEQQQLEEALNELLEEVRANPQQILASDA 81 (455)
T ss_pred cCcccccCCcchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhhhcCCcccCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999997764333 56678999
Q ss_pred chHHHHHHHHHHHHhCcccccccccccchhhcCC
Q psy16111 104 EDIHMNIESELIRRIGNVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 104 EDih~~iE~~L~e~~G~~gg~lHtGRSRNDqvat 137 (137)
||+|++||++|++++|+.|+++|+||||||++.|
T Consensus 82 edv~~~ie~~L~~~~g~~g~~lH~grSrnD~~~T 115 (455)
T PRK04833 82 EDIHSWVEGKLIDKVGDLGKKLHTGRSRNDQVAT 115 (455)
T ss_pred chHHHHHHHHHHHHhccccCcccCCCCchhhHHH
Confidence 9999999999999999999999999999999976
No 9
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.92 E-value=4.8e-25 Score=196.56 Aligned_cols=113 Identities=31% Similarity=0.554 Sum_probs=105.3
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcC-CcccCCCC
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHG-KVELKVEL 103 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g-~~~~~~~~ 103 (137)
.+|+|||++++++.+..|..+..+|+.|+.+||.+++||+.||.++||||++++++|.++|..+..+...+ .+...+..
T Consensus 2 ~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~e~i~~~~A~a~~l~~~Giip~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~ 81 (614)
T PRK12308 2 ALWGGRFSQAADTRFKQFNDSLRFDYRLAEQDIVGSIAWSKALLSVGVLSEEEQQKLELALNELKLEVMEDPEQILLSDA 81 (614)
T ss_pred cccccCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999987653233 56678999
Q ss_pred chHHHHHHHHHHHHhCcccccccccccchhhcCC
Q psy16111 104 EDIHMNIESELIRRIGNVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 104 EDih~~iE~~L~e~~G~~gg~lHtGRSRNDqvat 137 (137)
||+|++||++|++++|++|+++|+||||||++.|
T Consensus 82 ed~h~~ie~~L~~~~g~~~~~iH~g~S~nD~~~T 115 (614)
T PRK12308 82 EDIHSWVEQQLIGKVGDLGKKLHTGRSRNDQVAT 115 (614)
T ss_pred ccHHHHHHHHHHHHhcccccceecCCChhhHHHH
Confidence 9999999999999999999999999999999976
No 10
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.79 E-value=1.3e-19 Score=167.35 Aligned_cols=108 Identities=18% Similarity=0.206 Sum_probs=91.8
Q ss_pred ccCCCchHHHHHHHhh---CHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCch
Q psy16111 29 GCFQQSMNEFLQQFNE---SISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELED 105 (137)
Q Consensus 29 gR~~~~~~~~~~~f~~---s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~ED 105 (137)
||......|.+.+.++ ...-+...+++++.+++||++||.++||||++++++|+++|.++... ....|.+++..||
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ah~~~l~~~gii~~~~a~~I~~~l~~~~~~-~~~~~~~~~~~~~ 489 (887)
T PRK02186 411 GAARPGLPPEAQAIVYGPGASEAPLAELDHLAAIDEAHLVMLGDTGIVAPERARPLLDAHRRLRDA-GFAPLLARPAPRG 489 (887)
T ss_pred CccccCCChhhhceecCCCcchhhhhhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHh-HHhhCcCCCCCcc
Confidence 4444455555555554 23345778999999999999999999999999999999999988655 4567888999999
Q ss_pred HHHHHHHHHHHHhC-cccccccccccchhhcCC
Q psy16111 106 IHMNIESELIRRIG-NVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 106 ih~~iE~~L~e~~G-~~gg~lHtGRSRNDqvat 137 (137)
+|+++|++|++++| ++|||+|+|||||||++|
T Consensus 490 ~~~~~e~~L~~~~g~~~~~~lH~grSrnD~v~T 522 (887)
T PRK02186 490 LYMLYEAYLIERLGEDVGGVLQTARSRNDINAT 522 (887)
T ss_pred hHHHHHHHHHHHhChhhhcccCccccHHHHHHH
Confidence 99999999999999 799999999999999986
No 11
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=99.77 E-value=7.4e-19 Score=151.21 Aligned_cols=93 Identities=51% Similarity=0.734 Sum_probs=88.0
Q ss_pred CHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHHhCccccc
Q psy16111 45 SISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRK 124 (137)
Q Consensus 45 s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~~G~~gg~ 124 (137)
++.+|..++++++.+.+||++||.+.||||++.+..|++++.++...+..+.|.+++..+|+|+++|.+|++++|+.|++
T Consensus 1 ~~~~d~~~~~~~~~ve~A~a~al~~~Gii~~~~a~~I~~al~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~g~~~~~ 80 (435)
T cd01359 1 SISFDRRLFEEDIAGSIAHAVMLAEQGILTEEEAAKILAGLAKIRAEIEAGAFELDPEDEDIHMAIERRLIERIGDVGGK 80 (435)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhcccCCccCCCCCCcHHHHHHHHHHHHHHHHHhh
Confidence 56889999999999999999999999999999999999999999876678899999999999999999999999999999
Q ss_pred ccccccchhhcCC
Q psy16111 125 LHTGKTLKALLLP 137 (137)
Q Consensus 125 lHtGRSRNDqvat 137 (137)
+|+||||||++.|
T Consensus 81 iH~G~SsnDi~~T 93 (435)
T cd01359 81 LHTGRSRNDQVAT 93 (435)
T ss_pred hhccCCHHhHHHH
Confidence 9999999999875
No 12
>PRK14515 aspartate ammonia-lyase; Provisional
Probab=99.77 E-value=5.6e-19 Score=154.63 Aligned_cols=109 Identities=9% Similarity=0.020 Sum_probs=94.4
Q ss_pred hhhhccCCCchHHHHHHH-hhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Q psy16111 25 QLWTGCFQQSMNEFLQQF-NESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVEL 103 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f-~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~ 103 (137)
.+||- ...-.+++| +++..+|.+++++++.+++||+.||.++|+|+++++.+|+++|++|......+.|++++..
T Consensus 27 ~~~g~----~t~ra~~~f~~~~~~~~~~~i~~~~~v~~A~a~~l~~~G~l~~~~~~~I~~al~ei~~~~~~~~f~~~~~~ 102 (479)
T PRK14515 27 AYYGV----QTMRAVENFPITGYKIHEGLIKAFAIVKKAAALANTDVGRLELNKGGAIAEAAQEILDGKWHDHFIVDPIQ 102 (479)
T ss_pred ccchH----HHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCCCCCccc
Confidence 46762 223358899 6889999999999999999999999999999999999999999999887666899999988
Q ss_pred --ch------HHHHHHHHHHHHhCc-cccccc--------ccccchhhcCC
Q psy16111 104 --ED------IHMNIESELIRRIGN-VGRKLH--------TGKTLKALLLP 137 (137)
Q Consensus 104 --ED------ih~~iE~~L~e~~G~-~gg~lH--------tGRSRNDqvat 137 (137)
++ +|+.||+++++++|+ .|+++| +|||||||+.|
T Consensus 103 ~g~~t~~nmnvnevie~~~~~~~G~~~g~~~~~hpnd~vn~grS~ND~v~T 153 (479)
T PRK14515 103 GGAGTSMNMNANEVIANRALELLGMEKGDYHYISPNSHVNMAQSTNDAFPT 153 (479)
T ss_pred CCCcccccchHHHHHHHHHHHHhCcccCCccccCccccCCCCCCchhHHHH
Confidence 56 667799999999995 588555 99999999976
No 13
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=99.73 E-value=3.3e-18 Score=148.94 Aligned_cols=109 Identities=15% Similarity=0.188 Sum_probs=90.6
Q ss_pred hhhhccCCCchHHHHHHHhhC-HHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC--
Q psy16111 25 QLWTGCFQQSMNEFLQQFNES-ISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV-- 101 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s-~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~-- 101 (137)
++|++| +...++.|..| ..+|..++++++.+.+||+.||.+.||||++++.+|.++++.+......+.|..++
T Consensus 20 ~l~g~~----~~~~~~~f~~s~~~~~~~~~~~~l~ve~A~a~al~~~Giip~~~a~~I~~al~~i~~~~~~~~~~~~~~~ 95 (464)
T PRK00485 20 ALWGAQ----TQRSLENFPIGGERMPRELIRALALLKKAAARVNAELGLLDAEKADAIVAAADEVIAGKHDDHFPLDVWQ 95 (464)
T ss_pred cccchh----hHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCccccCCCcchhh
Confidence 699987 56679999766 99999999999999999999999999999999999999999986542346777777
Q ss_pred --CCchHHHHH----HHHHHHHhCc---------ccccccccccchhhcCC
Q psy16111 102 --ELEDIHMNI----ESELIRRIGN---------VGRKLHTGKTLKALLLP 137 (137)
Q Consensus 102 --~~EDih~~i----E~~L~e~~G~---------~gg~lHtGRSRNDqvat 137 (137)
..+|+|++| +.++.+..|+ .++++|+|||||||+.|
T Consensus 96 ~~~~~~~~~~i~~~i~~~~~~~~g~~~~~~~~~h~~~~vh~G~SrnD~v~T 146 (464)
T PRK00485 96 TGSGTQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFPT 146 (464)
T ss_pred ccccccccccHHHHHHHHHHHhcCccccccCccCccccCCCCCCchhHHHH
Confidence 789998888 5555566673 34445599999999976
No 14
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F ....
Probab=99.69 E-value=2e-17 Score=136.80 Aligned_cols=109 Identities=28% Similarity=0.341 Sum_probs=99.0
Q ss_pred ccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcC-CcccCCCCchHH
Q psy16111 29 GCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHG-KVELKVELEDIH 107 (137)
Q Consensus 29 gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g-~~~~~~~~EDih 107 (137)
|||..+.++.+..|+.+..+|.++..+++.+..||+.++.+.|+|+++.+.+|.+++.++..++... .|.+++..+|+|
T Consensus 1 Gr~~~~~~~~~~~~s~~~~~~~~l~~~~~~~e~a~~~a~a~~g~i~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~ 80 (312)
T PF00206_consen 1 GRYEVPTDEMYAIFSDRARFDFWLAEYDIRVEAALAKALAEAGIIPKEAADAIVKALEEILEDGDLDDAFELDEIEEDIG 80 (312)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHTCTHGHHHHCSCSSSHH
T ss_pred CCcCCchHHHHHHHCHHHHhCCEeeccHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhccccccchhhhhccch
Confidence 7899999999999999999999999999999999999999999999999999999999999864443 577899999999
Q ss_pred HHHHHHHHHHhC-------cccccccccccchhhcCC
Q psy16111 108 MNIESELIRRIG-------NVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 108 ~~iE~~L~e~~G-------~~gg~lHtGRSRNDqvat 137 (137)
..++..|.+.+| +.++++|+||||||++.|
T Consensus 81 ~~~~~~l~~~~~e~~~~~~~~~~~vH~G~Ts~Di~~T 117 (312)
T PF00206_consen 81 HAVEANLNEVLGELLGEPPEAGGWVHYGRTSNDIVDT 117 (312)
T ss_dssp HHHHHHHHHHHHHHHTHSSGGGGGTTTT--HHHHHHH
T ss_pred hHHHHHHHHHhhhhhhccccccccccCCCcHHHHHHH
Confidence 999999999998 789999999999999865
No 15
>PRK12425 fumarate hydratase; Provisional
Probab=99.69 E-value=4.2e-17 Score=142.25 Aligned_cols=100 Identities=12% Similarity=0.063 Sum_probs=85.8
Q ss_pred HHHHHh-hCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCccc----CCCCchHHHHH--
Q psy16111 38 FLQQFN-ESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVEL----KVELEDIHMNI-- 110 (137)
Q Consensus 38 ~~~~f~-~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~----~~~~EDih~~i-- 110 (137)
.+.+|- +...+...+.+....+.+||+.||.++|+|+++++..|+++|++|......+.|++ .+..||+|++|
T Consensus 27 a~~nf~~~~~~~~~~~i~a~~~ik~Aha~~l~~~G~l~~~~~~~I~~al~ei~~~~~~~~f~~~~~~~g~~ed~~mnvne 106 (464)
T PRK12425 27 SLINFAIGKERMPLAVLHALALIKKAAARVNDRNGDLPADIARLIEQAADEVLDGQHDDQFPLVVWQTGSGTQSNMNVNE 106 (464)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCCCccCCCCCCcchHHHHHHH
Confidence 466775 33455588999999999999999999999999999999999999988766688884 44599999999
Q ss_pred --HHHHHHHhCc-cccc--------ccccccchhhcCC
Q psy16111 111 --ESELIRRIGN-VGRK--------LHTGKTLKALLLP 137 (137)
Q Consensus 111 --E~~L~e~~G~-~gg~--------lHtGRSRNDqvat 137 (137)
|+++.+++|+ .||+ +|+|||||||+.|
T Consensus 107 vi~~~~~e~~G~~~g~~~~vhpn~~vh~g~S~ND~~~T 144 (464)
T PRK12425 107 VIAGRANELAGNGRGGKSPVHPNDHVNRSQSSNDCFPT 144 (464)
T ss_pred HHHHHHHHHhCcccccccccCchhcccCCCChhhHHHH
Confidence 6777788884 8889 9999999999976
No 16
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=99.69 E-value=3.4e-17 Score=136.05 Aligned_cols=85 Identities=26% Similarity=0.352 Sum_probs=76.5
Q ss_pred HHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHHhCcc-cccccccccc
Q psy16111 53 YREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNV-GRKLHTGKTL 131 (137)
Q Consensus 53 ~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~~G~~-gg~lHtGRSR 131 (137)
+++++.+.+||++||.+.|+|+++++..|.+++..+..+.....+...+..||+|+++|++|.+++|+. ++++|+||||
T Consensus 1 ~~~~l~ve~A~a~al~~~Gli~~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~g~~~~~~lH~G~S~ 80 (325)
T cd01334 1 IRADLQVEKAHAKALAELGLLPKEAAEAILAALDEILEGIAADQVEQEGSGTHDVMAVEEVLAERAGELNGGYVHTGRSS 80 (325)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCccccCeeeCCCCccHHHHHHHHHHHHhccccCCCCccCCCC
Confidence 357889999999999999999999999999999999876444444678999999999999999999975 9999999999
Q ss_pred hhhcCC
Q psy16111 132 KALLLP 137 (137)
Q Consensus 132 NDqvat 137 (137)
||++.|
T Consensus 81 nDi~~t 86 (325)
T cd01334 81 NDIVDT 86 (325)
T ss_pred ccHHHH
Confidence 999875
No 17
>PLN00134 fumarate hydratase; Provisional
Probab=99.64 E-value=3.6e-16 Score=136.20 Aligned_cols=101 Identities=17% Similarity=0.141 Sum_probs=88.1
Q ss_pred HHHHHHhhC---HHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC---C-----Cch
Q psy16111 37 EFLQQFNES---ISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV---E-----LED 105 (137)
Q Consensus 37 ~~~~~f~~s---~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~---~-----~ED 105 (137)
..+++|-.| ..+...+......+.+||++||.++|+|+++++..|+++|++|......+.|.+++ + ++|
T Consensus 18 ra~~nf~~~~~~~~~~~~~i~a~~~v~~A~a~~l~~~G~l~~~~a~~I~~al~ei~~~~~~~~f~~~~~~~g~g~~~~~~ 97 (458)
T PLN00134 18 RSLQNFEIGGERERMPEPIVRAFGIVKKAAAKVNMEYGLLDPDIGKAIMQAADEVAEGKLDDHFPLVVWQTGSGTQTNMN 97 (458)
T ss_pred HHHHhcCCCCCccCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCccccccccCCcccccCc
Confidence 356777654 46667888889999999999999999999999999999999998875568888877 3 788
Q ss_pred HHHHHHHHHHHHhC-ccccc--cc------ccccchhhcCC
Q psy16111 106 IHMNIESELIRRIG-NVGRK--LH------TGKTLKALLLP 137 (137)
Q Consensus 106 ih~~iE~~L~e~~G-~~gg~--lH------tGRSRNDqvat 137 (137)
||..||+++++++| +.|++ +| +||||||++.|
T Consensus 98 v~evie~~l~e~~g~~~g~~~~lHp~d~vh~G~S~nDiv~T 138 (458)
T PLN00134 98 ANEVIANRAAEILGGPVGEKSPVHPNDHVNRSQSSNDTFPT 138 (458)
T ss_pred HHHHHHHHHHHHhCcccCCccccCcccccCCCCChhhHHHH
Confidence 99999999999999 58888 88 99999999976
No 18
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=99.62 E-value=7.5e-16 Score=134.59 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=82.5
Q ss_pred HHHHHhh-CHHHH--HHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCC----CchHHHHH
Q psy16111 38 FLQQFNE-SISVD--EVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVE----LEDIHMNI 110 (137)
Q Consensus 38 ~~~~f~~-s~~~D--~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~----~EDih~~i 110 (137)
.+..|-- ...+- ..++++++.+++||+.||.++||||++++.+|.++|..+......+.|.+++. .||+|++|
T Consensus 30 ~~~~f~~~~~~~~~~~~~~~~~l~ve~A~a~al~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~~~~e~~~~~v 109 (472)
T PRK12273 30 AVENFPISGVKISDYPELIRALAMVKKAAALANKELGLLDEEKADAIVAACDEILAGKLHDQFVVDVIQGGAGTSTNMNA 109 (472)
T ss_pred HHHcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccCCcccchhhccccchhhhHH
Confidence 4556642 22333 78999999999999999999999999999999999999976544566877776 89999999
Q ss_pred HHH----HHHHhC-ccccc--cc------ccccchhhcCC
Q psy16111 111 ESE----LIRRIG-NVGRK--LH------TGKTLKALLLP 137 (137)
Q Consensus 111 E~~----L~e~~G-~~gg~--lH------tGRSRNDqvat 137 (137)
|.. +++++| +.|++ +| +||||||||.|
T Consensus 110 ~~~i~~~~~e~~g~~~~~~~~vHp~d~v~~GrSrnD~v~T 149 (472)
T PRK12273 110 NEVIANRALELLGHEKGEYQYVHPNDHVNMSQSTNDAYPT 149 (472)
T ss_pred HHHHHHHHHHHhCcccCCcceeCCCCCCCCCCCchHHHHH
Confidence 988 567999 45656 99 99999999976
No 19
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=99.62 E-value=6.3e-16 Score=134.32 Aligned_cols=99 Identities=19% Similarity=0.252 Sum_probs=81.0
Q ss_pred HHHHh-hCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCC----chHHHHHH--
Q psy16111 39 LQQFN-ESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVEL----EDIHMNIE-- 111 (137)
Q Consensus 39 ~~~f~-~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~----EDih~~iE-- 111 (137)
+..|- .-..+|..++++++.+.+||+.||.+.||||++++++|.+++..+......+.|++++.. +|+|+++|
T Consensus 26 ~~~~~~~~~~~d~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~~al~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~v 105 (450)
T cd01357 26 LENFPISGLKIHPELIRALAMVKKAAALANAELGLLDEEKAEAIVKACDEIIAGKLHDQFVVDVIQGGAGTSTNMNANEV 105 (450)
T ss_pred HHcCCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccCCCccchhhccccchhhhhHhHH
Confidence 44553 245679999999999999999999999999999999999999998754222667777766 59777777
Q ss_pred --HHHHHHhC-ccccc--------ccccccchhhcCC
Q psy16111 112 --SELIRRIG-NVGRK--------LHTGKTLKALLLP 137 (137)
Q Consensus 112 --~~L~e~~G-~~gg~--------lHtGRSRNDqvat 137 (137)
..+++++| ++|+| +|+|||||||+.|
T Consensus 106 i~~~~~e~~g~~~g~~~~~h~~~~vH~GrSrnD~v~T 142 (450)
T cd01357 106 IANRALELLGHEKGEYQYVHPNDHVNMSQSTNDVYPT 142 (450)
T ss_pred HHHHHHHHhCccccCCcccCCcccccCCCChHhHHHH
Confidence 66677799 56776 9999999999976
No 20
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=99.62 E-value=4.8e-16 Score=135.16 Aligned_cols=109 Identities=16% Similarity=0.174 Sum_probs=89.5
Q ss_pred hhhhccCCCchHHHHHHHhhC-HHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC--
Q psy16111 25 QLWTGCFQQSMNEFLQQFNES-ISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV-- 101 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s-~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~-- 101 (137)
++|++ ..+..+..|..+ -.++..++++++.+..||+.||.+.||||++++..|.++|..+......+.|.+++
T Consensus 16 ~~~g~----~~~~~~~~~~~~~~~~~~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~~~l~~i~~~~~~~~~~~~~~~ 91 (450)
T cd01596 16 AYYGA----QTQRALENFPISGERMPPELIRALALVKKAAALANAELGLLDEEKADAIVQACDEVIAGKLDDQFPLDVWQ 91 (450)
T ss_pred ccccH----hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCCcccHHh
Confidence 48997 566678888854 44678999999999999999999999999999999999999997643446777666
Q ss_pred --CCchHHHHHHH----HHHHHhCc-cccc--------ccccccchhhcCC
Q psy16111 102 --ELEDIHMNIES----ELIRRIGN-VGRK--------LHTGKTLKALLLP 137 (137)
Q Consensus 102 --~~EDih~~iE~----~L~e~~G~-~gg~--------lHtGRSRNDqvat 137 (137)
..+|+|++||. ++++++|+ .|+| +|+|||||||+.|
T Consensus 92 ~~~~~~~~~~v~~~i~~~~~~~~g~~~g~~~~h~~~~v~h~g~SrnD~v~t 142 (450)
T cd01596 92 TGSGTSTNMNVNEVIANRALELLGGKKGKYPVHPNDDVNNSQSSNDDFPPA 142 (450)
T ss_pred ccCcccccchHHHHHHHHHHHHhccccCCcccCCCcccCCCCCCchHHHHH
Confidence 57899888887 55577884 5777 6699999999875
No 21
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=99.60 E-value=3.4e-16 Score=132.89 Aligned_cols=87 Identities=21% Similarity=0.209 Sum_probs=74.1
Q ss_pred HHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccC-CCCchHHHHHHHHHHHHhCc-cccccc
Q psy16111 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELK-VELEDIHMNIESELIRRIGN-VGRKLH 126 (137)
Q Consensus 49 D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~-~~~EDih~~iE~~L~e~~G~-~gg~lH 126 (137)
|..++++++.+++||+.||.++||||++++..|.++|..+..+... -.... +..+|+ .++|++|++++|+ +|+++|
T Consensus 7 ~~~~~~~~l~ve~A~a~~l~~~giip~~~a~~i~~~l~~~~~d~~~-~~~~~~~~~~~v-~~~e~~L~~~~g~~~~~~vH 84 (381)
T cd01595 7 EENKLRTWLDVEAALAEAQAELGLIPKEAAEEIRAAADVFEIDAER-IAEIEKETGHDV-IAFVYALAEKCGEDAGEYVH 84 (381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhcccCCHHH-HHHHHHHhCcCc-HHHHHHHHHHhhhHhhhHee
Confidence 6889999999999999999999999999999999999986332111 11222 456888 9999999999997 999999
Q ss_pred ccccchhhcCC
Q psy16111 127 TGKTLKALLLP 137 (137)
Q Consensus 127 tGRSRNDqvat 137 (137)
+||||||++.|
T Consensus 85 ~g~S~nDi~~T 95 (381)
T cd01595 85 FGATSQDINDT 95 (381)
T ss_pred cCcCHHHHHHH
Confidence 99999999976
No 22
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=99.58 E-value=1.7e-15 Score=131.93 Aligned_cols=109 Identities=16% Similarity=0.194 Sum_probs=88.3
Q ss_pred hhhhccCCCchHHHHHHH-hhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC--
Q psy16111 25 QLWTGCFQQSMNEFLQQF-NESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV-- 101 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f-~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~-- 101 (137)
++|+. .....++.| +++..++..++...+.+.+||+.||.+.||||+++++.|.++|..+......+.|..++
T Consensus 16 ~~~g~----~~~~~~~~f~~~~~~~~~~~i~~~l~ve~A~a~al~~~GiIp~~~a~~I~~al~~i~~~~~~~~~~~~~~~ 91 (455)
T cd01362 16 ALWGA----QTQRSLENFPIGGERMPRELIRALGLLKKAAAQANAELGLLDEEKADAIVQAADEVIAGKLDDHFPLVVWQ 91 (455)
T ss_pred cchhH----HHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccccCCceehhh
Confidence 69942 445568888 56677789999999999999999999999999999999999999996542346777777
Q ss_pred --CCchHHHHHHHHHH----HHhC---------cccccccccccchhhcCC
Q psy16111 102 --ELEDIHMNIESELI----RRIG---------NVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 102 --~~EDih~~iE~~L~----e~~G---------~~gg~lHtGRSRNDqvat 137 (137)
..+|+|++++..+. +..| ..++++|+||||||++.|
T Consensus 92 ~~~~~~~~~~v~~~i~~~~~~~~g~~~g~~~~~~~~~~vH~G~SrnDiv~T 142 (455)
T cd01362 92 TGSGTQTNMNVNEVIANRAIELLGGVLGSKKPVHPNDHVNMSQSSNDTFPT 142 (455)
T ss_pred ccccccccccHHHHHHHHHHHhcCcccCCcCcCCccccccCCCCchhHHHH
Confidence 78888887665555 7778 345569999999999976
No 23
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=99.54 E-value=6.9e-15 Score=125.42 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=71.7
Q ss_pred HHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHHhCccccccccc
Q psy16111 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTG 128 (137)
Q Consensus 49 D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~~G~~gg~lHtG 128 (137)
|...+++.+.+.+||+.||.++||||+++++.|.+++..+...+.. + ..+..+|+ .++|++|++++|++|+++|+|
T Consensus 13 ~~~~~~~~l~ve~A~a~~l~~~Glip~~~a~~I~~~l~~~~~~~~~--~-~~~~~~dv-~~~e~~L~~~~g~~~~~lH~G 88 (387)
T cd01360 13 EENKFRKWLEVEAAVCEAWAKLGVIPAEAAEEIRKKAKFDVERVKE--I-EAETKHDV-IAFVTAIAEYCGEAGRYIHFG 88 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCHHHHHH--H-HHHhCCCh-HHHHHHHHHHHHHhhhheeCC
Confidence 5667889999999999999999999999999999999765433211 1 12445677 899999999999999999999
Q ss_pred ccchhhcCC
Q psy16111 129 KTLKALLLP 137 (137)
Q Consensus 129 RSRNDqvat 137 (137)
|||||++.|
T Consensus 89 ~S~nDi~~t 97 (387)
T cd01360 89 LTSSDVVDT 97 (387)
T ss_pred CChhhhHHH
Confidence 999999976
No 24
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=99.53 E-value=2.7e-15 Score=129.41 Aligned_cols=87 Identities=15% Similarity=0.131 Sum_probs=70.3
Q ss_pred HHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCchHHHHHHHHHHHHhC-ccccccc
Q psy16111 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVE-LKVELEDIHMNIESELIRRIG-NVGRKLH 126 (137)
Q Consensus 49 D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~-~~~~~EDih~~iE~~L~e~~G-~~gg~lH 126 (137)
|..++...+.+.+||+.||.+.|+||+++++.|.+++..+..+ ...+. ..+..++.+.++|.+|++++| +.|+++|
T Consensus 17 ~~~~i~~~~~ve~A~a~~l~~~Gii~~~~a~~I~~al~~~~~~--~~~~~~~~~~~~~~v~a~e~~l~e~~g~~~g~~lH 94 (437)
T cd01597 17 DENRVQAMLDVEAALARAQAELGVIPKEAAAEIAAAADVERLD--LEALAEATARTGHPAIPLVKQLTAACGDAAGEYVH 94 (437)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccccCCC--HHHHHHHHHHhCCCcHHHHHHHHHHcCccccCeee
Confidence 4567888999999999999999999999999999998776211 11221 233445556799999999999 5699999
Q ss_pred ccccchhhcCC
Q psy16111 127 TGKTLKALLLP 137 (137)
Q Consensus 127 tGRSRNDqvat 137 (137)
+||||||++.|
T Consensus 95 ~grSrnD~~~T 105 (437)
T cd01597 95 WGATTQDIIDT 105 (437)
T ss_pred cCccHhHHHHH
Confidence 99999999976
No 25
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=99.53 E-value=1.3e-14 Score=126.77 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=81.5
Q ss_pred HHHHHhh-CHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCc----hHHHH---
Q psy16111 38 FLQQFNE-SISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE----DIHMN--- 109 (137)
Q Consensus 38 ~~~~f~~-s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~E----Dih~~--- 109 (137)
.+.+|-. ...+...++++.+.+.+||+.||.+.|+||++++..|.++++.+......+.|++++..| |+|++
T Consensus 30 ~~~~f~~~~~~~~~~~i~a~~~ve~A~a~~l~~~Glip~~~a~~I~~al~~i~~~~~~d~f~~~~~~~~~~~~~~~n~~~ 109 (473)
T PRK13353 30 AVENFPITGYKIHPELIRAFAQVKKAAALANADLGLLPRRIAEAIVQACDEILAGKLHDQFIVDPIQGGAGTSTNMNANE 109 (473)
T ss_pred HHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccCCCCcchhhccccchhcchhhH
Confidence 4556642 234457889999999999999999999999999999999999987653336777877774 96666
Q ss_pred -HHHHHHHHhCc-ccc--------cccccccchhhcCC
Q psy16111 110 -IESELIRRIGN-VGR--------KLHTGKTLKALLLP 137 (137)
Q Consensus 110 -iE~~L~e~~G~-~gg--------~lHtGRSRNDqvat 137 (137)
|+++|++++|+ .|+ ++|+|||||||+.|
T Consensus 110 vi~~~l~e~~g~~~g~~~~~hp~d~vH~GrSrnD~v~T 147 (473)
T PRK13353 110 VIANRALELLGGEKGDYHYVSPNDHVNMAQSTNDVFPT 147 (473)
T ss_pred HHHHHHHHHhCccccCCccCCcccCccCCCChhhHHHH
Confidence 88888899995 577 49999999999976
No 26
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.51 E-value=6.8e-15 Score=123.59 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=74.1
Q ss_pred HHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHHhC-ccccc
Q psy16111 46 ISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIG-NVGRK 124 (137)
Q Consensus 46 ~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~~G-~~gg~ 124 (137)
+-.|..++.+.+.+.+||+.||.++|+||++.++.|.++++++..+..... ......++.+.++|++|++++| +.|++
T Consensus 14 i~sd~~~i~~~~~ve~A~a~al~~~Gii~~~~a~~I~~a~~~~~~d~~~~~-~~~~~~~~~~~~~~~~l~~~~g~~~g~~ 92 (338)
T TIGR02426 14 LFSDRAFLRAMLDFEAALARAQADAGLIPAEAAAAIEAACAAAAPDLEALA-HAAATAGNPVIPLVKALRKAVAGEAARY 92 (338)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhccCCCCHHHHH-hHHHhcCCcHHHHHHHHHHHhCccccCc
Confidence 344678899999999999999999999999999999999987643211100 0124467778899999999999 58999
Q ss_pred ccccccchhhcCC
Q psy16111 125 LHTGKTLKALLLP 137 (137)
Q Consensus 125 lHtGRSRNDqvat 137 (137)
+|+||||||++.|
T Consensus 93 vH~G~S~nD~~~T 105 (338)
T TIGR02426 93 VHRGATSQDVIDT 105 (338)
T ss_pred ccCCCChhhhHHH
Confidence 9999999999976
No 27
>PRK06390 adenylosuccinate lyase; Provisional
Probab=99.48 E-value=1.5e-14 Score=125.51 Aligned_cols=87 Identities=18% Similarity=0.078 Sum_probs=71.6
Q ss_pred HHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC-CCchHHHHHHHHHHHHhCcccccccc
Q psy16111 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV-ELEDIHMNIESELIRRIGNVGRKLHT 127 (137)
Q Consensus 49 D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~-~~EDih~~iE~~L~e~~G~~gg~lHt 127 (137)
|...+.+++.+..||++||.+.||||++++..|.+++.....+... -..... ..+|+ .++|++|++++|+.|+++|+
T Consensus 21 ~~~~~~~~l~ve~A~a~al~~~Giip~~~a~~I~~~l~~~~~d~~~-~~~~~~~~~~dv-~~~~~~L~~~~g~~~~~iH~ 98 (451)
T PRK06390 21 DENRLRYMLKVEAAIAKAEYEYGIIPRDAFLDIKNAVDSNSVRLER-VREIESEIKHDV-MALVEALSEQCSAGKNYVHF 98 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHHH-HHHHHHHhCCCc-HHHHHHHHHHhhhhhhheec
Confidence 5667999999999999999999999999999999998764222111 001122 26799 99999999999999999999
Q ss_pred cccchhhcCC
Q psy16111 128 GKTLKALLLP 137 (137)
Q Consensus 128 GRSRNDqvat 137 (137)
||||||++.|
T Consensus 99 G~SsnDi~~T 108 (451)
T PRK06390 99 GVTSNDINDT 108 (451)
T ss_pred CccHhhhHHH
Confidence 9999999976
No 28
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=99.43 E-value=4.7e-14 Score=122.25 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=70.1
Q ss_pred HHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHH--HHHHHhcCCcccCCCCchHHHHHHHHHHHHhC-cccccc
Q psy16111 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKD--IEYDIEHGKVELKVELEDIHMNIESELIRRIG-NVGRKL 125 (137)
Q Consensus 49 D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~--l~~~~~~g~~~~~~~~EDih~~iE~~L~e~~G-~~gg~l 125 (137)
|...+++.+.+..||+.||.+.||||++.++.|.++|.. +..+ ..+.+ .+..++.+.++|++|++++| +.|+++
T Consensus 21 ~~~~~~~~l~ve~A~a~~l~~~Giip~~~a~~I~~~l~~~~i~~~-~~~~~--~~~~~~~v~~~e~~L~~~~~~~~~~~v 97 (449)
T PRK08540 21 EENKLQKMLDVEAALARAEAELGLIPEEAAEEINRKASTKYVKLE-RVKEI--EAEIHHDIMAVVKALSEVCEGDAGEYV 97 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHH-HHHHH--HHHhCCCcHHHHHHHHHHhhhhhhcce
Confidence 566788999999999999999999999999999999977 5422 11111 12334444999999999995 899999
Q ss_pred cccccchhhcCC
Q psy16111 126 HTGKTLKALLLP 137 (137)
Q Consensus 126 HtGRSRNDqvat 137 (137)
|+||||||++.|
T Consensus 98 H~g~S~nDi~~T 109 (449)
T PRK08540 98 HFGATSNDIIDT 109 (449)
T ss_pred ecCccHhhHHhH
Confidence 999999999976
No 29
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=99.43 E-value=1.4e-13 Score=120.42 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=79.2
Q ss_pred HHHHHhh-CHHHH--HHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH-hcCCcccCCCC----chHHHH
Q psy16111 38 FLQQFNE-SISVD--EVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDI-EHGKVELKVEL----EDIHMN 109 (137)
Q Consensus 38 ~~~~f~~-s~~~D--~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~-~~g~~~~~~~~----EDih~~ 109 (137)
.+..|-. -..+. ...+.+.+.+.+||++||.++||||+++++.|.+++..+.... .++.+.+++.. ||+|++
T Consensus 25 ~~~~~~~~~~~~~~~~~~i~~~l~ve~A~a~al~e~GiIp~~~a~~I~~al~~~~d~~~~~~~~~l~~~~~~~g~~~~~~ 104 (468)
T TIGR00839 25 ASENFYISNNKISDIPEFVRGMVMVKKAAALANKELGTIPESIANAIVAACDEILNNGKCHDQFPVDVYQGGAGTSVNMN 104 (468)
T ss_pred HHHcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccccccccccHHHccCccccccc
Confidence 4555642 22344 7789999999999999999999999999999999998875420 11245566655 557777
Q ss_pred H----HHHHHHHhC-ccccccc--------ccccchhhcCC
Q psy16111 110 I----ESELIRRIG-NVGRKLH--------TGKTLKALLLP 137 (137)
Q Consensus 110 i----E~~L~e~~G-~~gg~lH--------tGRSRNDqvat 137 (137)
| |..|++++| +.|+++| +||||||++.|
T Consensus 105 v~~vie~~l~e~~g~~~g~~~H~~p~~~v~~G~S~nD~v~T 145 (468)
T TIGR00839 105 TNEVIANLALELMGHQKGEYQYLNPNDHVNKSQSTNDAYPT 145 (468)
T ss_pred hHHHHHHHHHHHhCccccCeeecCCCCCCCCCCChhhHHHH
Confidence 6 999999999 6999999 79999999976
No 30
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=99.42 E-value=2e-13 Score=117.90 Aligned_cols=81 Identities=21% Similarity=0.245 Sum_probs=67.5
Q ss_pred HHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHH-------HHHHHHHHhcCCcccCCCCchHHHHHHHHHHHHhCcc
Q psy16111 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT-------LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNV 121 (137)
Q Consensus 49 D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~a-------L~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~~G~~ 121 (137)
|...+.+.+.+++||+.||.++||||++++..|.++ +..+... .+ ...+|+ .++|++|++++|++
T Consensus 16 ~~~~~~~~l~ve~A~a~~l~~~giip~~~a~~i~~~~~~~~~d~~~l~~~-~~------~~~~~v-~~~e~~l~~~~g~~ 87 (435)
T TIGR00928 16 EENKFKTWLDVEVALLRALAELGVIPAEAVKEIRAKANFTDVDLARIKEI-EA------VTRHDV-KAVVYALKEKCGAE 87 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhCCCCccCHHHHHHH-HH------HHCcCh-HHHHHHHHHHhhhh
Confidence 366788999999999999999999999999999987 3333111 11 124566 99999999999999
Q ss_pred cccccccccchhhcCC
Q psy16111 122 GRKLHTGKTLKALLLP 137 (137)
Q Consensus 122 gg~lHtGRSRNDqvat 137 (137)
|+++|+||||||++.|
T Consensus 88 ~~~vh~g~SsnD~~~T 103 (435)
T TIGR00928 88 GEFIHFGATSNDIVDT 103 (435)
T ss_pred hhheeecccHHHHHHh
Confidence 9999999999999976
No 31
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=99.37 E-value=6.4e-13 Score=115.94 Aligned_cols=109 Identities=15% Similarity=0.178 Sum_probs=83.3
Q ss_pred hhhhccCCCchHHHHHHHhh-CHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccC---
Q psy16111 25 QLWTGCFQQSMNEFLQQFNE-SISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELK--- 100 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~-s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~--- 100 (137)
++||- ...-.+..|.. -..++..++.+.+.+.+||+.||.+.|+||++.+..|.+++..+......+.|..+
T Consensus 17 ~~~g~----~t~r~~~~f~~~~~~~~~~~i~a~~~ve~A~a~a~~~~Giip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~ 92 (458)
T TIGR00979 17 KYWGA----QTQRSLENFKIGTEKMPLELIHAFAILKKAAAIVNEDLGKLDAKKADAIVQAADEILAGKLDDHFPLVVWQ 92 (458)
T ss_pred chhhH----HHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccCCCceeccc
Confidence 58852 22334677763 34566899999999999999999999999999999999999998654223555544
Q ss_pred -CCCch----HHHHHHHHHHHHhC-ccccc--ccc------cccchhhcCC
Q psy16111 101 -VELED----IHMNIESELIRRIG-NVGRK--LHT------GKTLKALLLP 137 (137)
Q Consensus 101 -~~~ED----ih~~iE~~L~e~~G-~~gg~--lHt------GRSRNDqvat 137 (137)
...++ +|..|+.+|++++| +.||+ +|+ ||||||++.|
T Consensus 93 ~~~~~~~~m~~~~via~~l~e~~g~~~g~~~~vH~~d~vn~G~S~nDiv~T 143 (458)
T TIGR00979 93 TGSGTQSNMNVNEVIANRAIELLGGKLGSKQPVHPNDHVNKSQSSNDTFPT 143 (458)
T ss_pred ccccccccccHHHHHHHHHHHHcCcccCCCceeCCCCCCCCCCCcccHHHH
Confidence 44554 55555559999998 56655 997 9999999876
No 32
>PRK08470 adenylosuccinate lyase; Provisional
Probab=99.30 E-value=2e-12 Score=112.17 Aligned_cols=84 Identities=21% Similarity=0.228 Sum_probs=69.0
Q ss_pred HHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHHHhcCCcccCCCCchHHHHHHHHHHHHhCcccccccc
Q psy16111 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLK-DIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127 (137)
Q Consensus 49 D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~-~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~~G~~gg~lHt 127 (137)
|...+...+.+.+||+.||.+.|+||++++..|.+++. ++... ..+ ..+..+|+ .+++++|++++|+.|+++|+
T Consensus 16 ~~~~~~~~l~ve~A~a~al~~~G~Ip~~~a~~I~~~~~~d~~~~---~~~-~~~~~~dv-~~~v~~L~e~~g~~~~~vH~ 90 (442)
T PRK08470 16 MQAKYDAWLEVEKAAVKAWNKLGLIPDSDCEKICKNAKFDIARI---DEI-EKTTKHDL-IAFLTSVSESLGEESRFVHY 90 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccchHHH---HHH-HHccCCCh-HHHHHHHHHHccccccceec
Confidence 56678899999999999999999999999999999874 22111 111 13567999 56679999999989999999
Q ss_pred cccchhhcCC
Q psy16111 128 GKTLKALLLP 137 (137)
Q Consensus 128 GRSRNDqvat 137 (137)
||||||++.|
T Consensus 91 G~TsnDi~dT 100 (442)
T PRK08470 91 GMTSSDCIDT 100 (442)
T ss_pred CCChhchHhH
Confidence 9999999876
No 33
>PRK09285 adenylosuccinate lyase; Provisional
Probab=99.14 E-value=3.1e-11 Score=105.44 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=75.2
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCC---CCHHHHHH---HHHHHHHHHHHHhcCCcc
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNI---IDEQDKEL---IVKTLKDIEYDIEHGKVE 98 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GI---Is~~ea~~---I~~aL~~l~~~~~~g~~~ 98 (137)
..|++||...+.+...-| -|..++++++.+..||+.+|.+.|+ |++..+.. |..... .+..+.+.
T Consensus 10 ~p~~~ry~~~~~e~~~~~-----s~~~~~~~~l~vE~A~a~a~a~~g~~~~ip~~~~~~~~~i~~~~~----~~~~~d~~ 80 (456)
T PRK09285 10 SPLDGRYASKTAALRPIF-----SEFGLIRYRVQVEVEWLIALAAHPGIPEVPPFSAEANAFLRAIVE----NFSEEDAA 80 (456)
T ss_pred CCCccccCCCCHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH----hhCcccHH
Confidence 479999998544444444 2377899999999999999999998 55544444 544431 22222233
Q ss_pred cCCCCchH--H--HHHHHHHHHHhC------cccccccccccchhhcCC
Q psy16111 99 LKVELEDI--H--MNIESELIRRIG------NVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 99 ~~~~~EDi--h--~~iE~~L~e~~G------~~gg~lHtGRSRNDqvat 137 (137)
.-...|+. | .++|.+|.+++| ++|+++|+||||||++.|
T Consensus 81 ~i~~~e~~~~hdv~a~~~~l~~~~~~~~~~~~~~~~vH~G~Ts~Di~dT 129 (456)
T PRK09285 81 RIKEIERTTNHDVKAVEYFLKEKLAGLPELEAVSEFIHFACTSEDINNL 129 (456)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHhcccCcchhHHhHccCCCChhhHHHH
Confidence 33344565 7 999999999997 478999999999999865
No 34
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=98.99 E-value=2.7e-10 Score=96.43 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=70.0
Q ss_pred HHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCchHHHHHHHHHHHHhC-ccccccc
Q psy16111 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVE-LKVELEDIHMNIESELIRRIG-NVGRKLH 126 (137)
Q Consensus 49 D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~-~~~~~EDih~~iE~~L~e~~G-~~gg~lH 126 (137)
|...+...+.+-+|++.++.+.|+||++.+..|.+++..+..+.. .+. .....++.+..+++.|.+++| +.|+++|
T Consensus 26 ~~~~i~a~l~vE~A~a~a~~~~G~Ip~~~a~~I~~a~~~~~~d~~--~~~~~~~~~g~~v~~~v~~l~~~~g~~~~~~vH 103 (351)
T PRK05975 26 AEADIAAMLAFEAALAEAEAEHGIIPAEAAERIAAACETFEPDLA--ALRHATARDGVVVPALVRQLRAAVGEEAAAHVH 103 (351)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCCHH--HHhhHHHhcCCcHHHHHHHHHHHhCchhhCccc
Confidence 566788899999999999999999999999999999977532211 111 123345566899999999998 6899999
Q ss_pred ccccchhhcCC
Q psy16111 127 TGKTLKALLLP 137 (137)
Q Consensus 127 tGRSRNDqvat 137 (137)
+||||||++.|
T Consensus 104 ~G~TsnDi~dT 114 (351)
T PRK05975 104 FGATSQDVIDT 114 (351)
T ss_pred CCCChhhHHHH
Confidence 99999999865
No 35
>PRK07492 adenylosuccinate lyase; Provisional
Probab=98.73 E-value=2.1e-08 Score=87.23 Aligned_cols=79 Identities=20% Similarity=0.175 Sum_probs=60.8
Q ss_pred HhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHH-------HHHHHHHhcCCcccCCCCchHHHHHHHHHHHHhCcccc
Q psy16111 51 VLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL-------KDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGR 123 (137)
Q Consensus 51 ~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL-------~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~~G~~gg 123 (137)
..+...+.+-.|.+..+.+.|+||++.+..|.+.. ..|.+. . ...--|+ .++|++|++++|+.|+
T Consensus 18 ~~~~~~l~vE~ala~a~~~~g~ip~~aa~~i~~~~~~~~~d~~~~~~~-~------~~~~h~v-~a~~~~L~~~~g~~~~ 89 (435)
T PRK07492 18 TKFRIWFEIEAHACEAQAELGVIPKEAAETIWEKGKDAEFDVARIDEI-E------AVTKHDV-IAFLTHLAEFVGPDAR 89 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCcccCCCHHHHHHH-H------HHhCCCh-HHHHHHHHHHhhHhhh
Confidence 44566677777888889999999999999997752 222221 0 1123445 8999999999998899
Q ss_pred cccccccchhhcCC
Q psy16111 124 KLHTGKTLKALLLP 137 (137)
Q Consensus 124 ~lHtGRSRNDqvat 137 (137)
++|+||||||++.|
T Consensus 90 ~vH~G~Ts~Di~dT 103 (435)
T PRK07492 90 FVHQGMTSSDVLDT 103 (435)
T ss_pred hhcCCCChhhhHHH
Confidence 99999999999876
No 36
>PRK07380 adenylosuccinate lyase; Provisional
Probab=98.54 E-value=1.4e-07 Score=81.92 Aligned_cols=81 Identities=21% Similarity=0.201 Sum_probs=62.8
Q ss_pred HHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHH----HHHHHHHHhcCCcccCCCCchHHHHHHHHHHHHhCccccc
Q psy16111 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT----LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRK 124 (137)
Q Consensus 49 D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~a----L~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~~G~~gg~ 124 (137)
|...+.+.+.+-.|-+..+.+.|+||++.+..|.+. +..|.+. . ...--|| .++.+.|.+++|+.|++
T Consensus 16 ~~~~~~~~l~vE~ala~a~~~~g~ip~~aa~~i~~~~~~d~~~i~~~-~------~~~~h~v-~a~v~~l~~~~g~~~~~ 87 (431)
T PRK07380 16 DTAKFQTWLDVEIAVCEAQAELGKIPQEAVEEIKAKANFDPQRILEI-E------AEVRHDV-IAFLTNVNEYVGDAGRY 87 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccCCCHHHHHHH-H------HHhCCCh-HHHHHHHHHHHHHhhcc
Confidence 455677777788899999999999999999999764 2222222 1 1233566 67888999999999999
Q ss_pred ccccccchhhcCC
Q psy16111 125 LHTGKTLKALLLP 137 (137)
Q Consensus 125 lHtGRSRNDqvat 137 (137)
+|+||||||++.|
T Consensus 88 vH~G~Ts~Di~dT 100 (431)
T PRK07380 88 IHLGMTSSDVLDT 100 (431)
T ss_pred ccCCCChhhhHHH
Confidence 9999999999876
No 37
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=98.41 E-value=1.4e-07 Score=81.99 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=63.6
Q ss_pred HHHhHHHhhhhcHHHHHHHHhcCCCCH------HHHHHHHHHHHH--------HHHHHhcCCcccCCCCchHHHHHHHHH
Q psy16111 49 DEVLYREDIAGSIAHVTMLGERNIIDE------QDKELIVKTLKD--------IEYDIEHGKVELKVELEDIHMNIESEL 114 (137)
Q Consensus 49 D~~L~~~di~~~~AH~~mL~~~GIIs~------~ea~~I~~aL~~--------l~~~~~~g~~~~~~~~EDih~~iE~~L 114 (137)
|...+.+.+.+-.|.+..+.+.|+||+ +.+..|.+.... +... . ...--|+ .++|.+|
T Consensus 7 ~~~~~~~~l~vE~ala~a~a~~g~Ip~~~~~~~~aa~~i~~~~~~~~~~d~~~~~~~-~------~~~~hdv-~al~~~l 78 (425)
T cd01598 7 EYALIKYRVQVEVEWLIALSNLEEIPEVPPLTKEELKFLRAIIENFSEEDALRIKEI-E------ATTNHDV-KAVEYFL 78 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhhcCccCHHHHHHH-H------HHHCCCc-HHHHHHH
Confidence 556678888899999999999999999 888888775532 1111 1 1223566 8999999
Q ss_pred HHHhC------cccccccccccchhhcCC
Q psy16111 115 IRRIG------NVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 115 ~e~~G------~~gg~lHtGRSRNDqvat 137 (137)
++++| +.|+++|+||||||++.|
T Consensus 79 ~~~~g~~~~~~~~~~~vH~G~TsnDi~dT 107 (425)
T cd01598 79 KEKFETLGLLKKIKEFIHFACTSEDINNL 107 (425)
T ss_pred HHHhcccccchhhhhHhccCCChhhhHHH
Confidence 99997 467899999999999876
No 38
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=98.15 E-value=6.4e-06 Score=71.66 Aligned_cols=95 Identities=9% Similarity=-0.060 Sum_probs=64.5
Q ss_pred hccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCC-CCHHHHHHHHHHH-----HHHHHHHhcCCcccCC
Q psy16111 28 TGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNI-IDEQDKELIVKTL-----KDIEYDIEHGKVELKV 101 (137)
Q Consensus 28 ~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GI-Is~~ea~~I~~aL-----~~l~~~~~~g~~~~~~ 101 (137)
.|||..+ .+..+.+ |...+...+.+-.|-+....+.|+ ||++.+..|.+.. ..|... ...
T Consensus 2 ~~ry~~~---~~~~~fs----~~~~~~~~l~~e~ala~a~~~~g~~ip~~~a~~i~~~~~~~d~~~i~~~-------e~~ 67 (436)
T cd03302 2 ASRYASK---EMVYIFS----PRKKFSTWRKLWLWLAEAEKELGLDISDEQIEEMKANVENIDFEIAAAE-------EKK 67 (436)
T ss_pred CCCcCCH---HHHHHcC----hHHHHHHHHHHHHHHHHhhHHhCCCCCHHHHHHHHHhhhcCCHHHHHHH-------HHH
Confidence 3566633 4444332 224456667777777788888999 9999999997764 111111 122
Q ss_pred CCchHHHHHHHHHHHHhCcccccccccccchhhcCC
Q psy16111 102 ELEDIHMNIESELIRRIGNVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 102 ~~EDih~~iE~~L~e~~G~~gg~lHtGRSRNDqvat 137 (137)
.--|| .+++..|.+++|++|+++|+|||+||.+.|
T Consensus 68 ~~hdv-~a~~~~l~~~~~~~~~~vH~G~TS~Di~dt 102 (436)
T cd03302 68 LRHDV-MAHVHAFGLLCPAAAGIIHLGATSCFVTDN 102 (436)
T ss_pred hCcCc-hHHHHHHHHHhHhccCeeeeCcCHHHHHHH
Confidence 34566 566667999999999999999988887654
No 39
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=98.03 E-value=1.7e-05 Score=69.14 Aligned_cols=102 Identities=11% Similarity=0.097 Sum_probs=68.9
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHH--HH-HHHhcCCcccCC
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKD--IE-YDIEHGKVELKV 101 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~--l~-~~~~~g~~~~~~ 101 (137)
.++++||+.+ .+.... -|...+...+.+-.|-+....+.|+||++.+..|.++.+. +. ..+..|. ..
T Consensus 6 ~~~~~~~~~~---~~~~i~----s~~~~i~a~l~ve~A~A~a~~~~G~ip~~~a~~I~~a~~~~~~d~~~~~~~~---~~ 75 (452)
T PRK09053 6 RLTDLYFGSP---AMRAIF----SDRATVQRMLDFEAALARAEAACGVIPAAAVAPIEAACDAERLDLDALAQAA---AL 75 (452)
T ss_pred hhhhhhcCCH---HHHHHc----CcHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccccCCCHHHHHHHH---hh
Confidence 3566666543 333322 2566788888899999999999999999999999987522 10 0011110 01
Q ss_pred CCchHHHHHHHHHHHHhC----cccccccccccchhhcCC
Q psy16111 102 ELEDIHMNIESELIRRIG----NVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 102 ~~EDih~~iE~~L~e~~G----~~gg~lHtGRSRNDqvat 137 (137)
.--++ ..+.+.|.+.+| +.++++|+||||||++.|
T Consensus 76 ~~~~~-~~lv~~l~~~~~~~~~~~~~~vH~G~SsnDi~~T 114 (452)
T PRK09053 76 AGNLA-IPLVKQLTAQVAARDAEAARYVHWGATSQDIIDT 114 (452)
T ss_pred cCCch-HHHHHHHHHHhcccCcchhccccCCCChhhhHHH
Confidence 11133 566677888886 579999999999999875
No 40
>PLN02848 adenylosuccinate lyase
Probab=97.96 E-value=9.3e-06 Score=71.33 Aligned_cols=102 Identities=12% Similarity=0.094 Sum_probs=68.3
Q ss_pred hhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCC---CH---HHHHHHHHHHHHHH----HHHhcCC
Q psy16111 27 WTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNII---DE---QDKELIVKTLKDIE----YDIEHGK 96 (137)
Q Consensus 27 w~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GII---s~---~ea~~I~~aL~~l~----~~~~~g~ 96 (137)
-++||..... .+..+.+ |..++.+.+.+-.|.+..+.+.|+| |+ +.+..|.+....+. ..+...
T Consensus 15 l~~ry~~~~~-e~~~ifS----d~a~~~~~l~vE~ala~a~a~~g~i~~~P~i~~~aa~~i~~~~~~~~~~d~~~~~~~- 88 (458)
T PLN02848 15 LDGRYWSKVK-DLRPIFS----EFGLIRYRVLVEVKWLLKLSQIPEVTEVPPFSDEANSFLEGIIAGFSVDDALEVKKI- 88 (458)
T ss_pred chhhhcCCcH-HHHHHcC----HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCHhhHHHHHHH-
Confidence 4457775212 2333322 5667788888889999999999986 55 88888877652220 000000
Q ss_pred cccCCCCchHHHHHHHHHHHHhC---c---ccccccccccchhhcCC
Q psy16111 97 VELKVELEDIHMNIESELIRRIG---N---VGRKLHTGKTLKALLLP 137 (137)
Q Consensus 97 ~~~~~~~EDih~~iE~~L~e~~G---~---~gg~lHtGRSRNDqvat 137 (137)
.....-|+ .++|..|.+++| + .++++|+||||||++.|
T Consensus 89 --e~~t~hdv-~a~~~~l~~~~~~~~~~~~~~~~vH~G~TsqDi~dT 132 (458)
T PLN02848 89 --ERVTNHDV-KAVEYFLKQKCKSHPELAKVLEFFHFACTSEDINNL 132 (458)
T ss_pred --HHHhCCCc-HHHHHHHHHHhccccchhhhhCcccCCCCHHHHHHH
Confidence 01233566 889999999996 2 56999999999999865
No 41
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=95.94 E-value=0.034 Score=49.07 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=63.9
Q ss_pred HHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHH-------HHHHHHHHhcCCcccCCCCchHHHHHHHHHHHHhC-c
Q psy16111 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT-------LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIG-N 120 (137)
Q Consensus 49 D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~a-------L~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~~G-~ 120 (137)
+...+++-+.+-.|-+..+.+.|+|+++.++.|.+. +..|... .+ ..--|| .+++..|.+.+| +
T Consensus 16 ~~~~~~~~l~vE~ala~A~aelG~Ip~~a~~~I~~~~~~~~~d~~~i~ei-e~------~t~HdV-~a~v~~l~e~~~~~ 87 (438)
T COG0015 16 EEAKLRAWLKVEAALARAQAELGVIPAEAAAEIDAAAAFAEFDLERIKEI-EA------ETGHDV-KALVRALAEKVGEE 87 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCHHHHHHH-HH------HhCCCc-HHHHHHHHHhcCcc
Confidence 345567778888999999999999999999888887 4555443 11 123577 999999999999 7
Q ss_pred ccccccccccchhhcC
Q psy16111 121 VGRKLHTGKTLKALLL 136 (137)
Q Consensus 121 ~gg~lHtGRSRNDqva 136 (137)
.++++|.|=..+|.+-
T Consensus 88 ~~~~VH~GaTS~DI~D 103 (438)
T COG0015 88 ASEYVHFGATSQDIID 103 (438)
T ss_pred cccceecccchHHHHh
Confidence 8999999999999763
No 42
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=92.21 E-value=0.15 Score=39.46 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=11.8
Q ss_pred HHhhhhcHHHHHHH
Q psy16111 54 REDIAGSIAHVTML 67 (137)
Q Consensus 54 ~~di~~~~AH~~mL 67 (137)
++.+.+.+||+.|+
T Consensus 2 ~~~~~i~~a~~~~~ 15 (231)
T cd01594 2 RADLLVELAAALAL 15 (231)
T ss_pred HHHHHHHHHHHHHH
Confidence 56788889999998
No 43
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=81.38 E-value=10 Score=24.48 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=36.9
Q ss_pred HhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcC
Q psy16111 51 VLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHG 95 (137)
Q Consensus 51 ~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g 95 (137)
.|+...+..-++-+--..+.|+||++.|..|...++.-...+...
T Consensus 11 ~l~~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~~qn 55 (59)
T PF10925_consen 11 ALYKQMLELKKQIIDKYVEAGVITQEQADAIKKHIDQRQEYMQQN 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 456667777788888999999999999999999999877664443
No 44
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=73.97 E-value=8.8 Score=21.48 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=21.9
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16111 60 SIAHVTMLGERNIIDEQDKELIVKTLK 86 (137)
Q Consensus 60 ~~AH~~mL~~~GIIs~~ea~~I~~aL~ 86 (137)
-+..+..|...|+||+++..+..+.|.
T Consensus 4 ~L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 4 RLEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 356678999999999999988776653
No 45
>PF07408 DUF1507: Protein of unknown function (DUF1507); InterPro: IPR009983 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; however they form alpha helical bundles and are thought to be involved in control of cell shape [].; PDB: 2ODM_B 2GBO_B.
Probab=70.65 E-value=13 Score=26.32 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=27.7
Q ss_pred HHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16111 48 VDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKD 87 (137)
Q Consensus 48 ~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~ 87 (137)
+|..||...-.++.| .+.|+|+.++++.|+..|++
T Consensus 44 lDTQmyGlSreIdFA-----Vrlgli~~~~Gk~ll~~LE~ 78 (90)
T PF07408_consen 44 LDTQMYGLSREIDFA-----VRLGLISEEEGKQLLSELER 78 (90)
T ss_dssp HHHHHHHHHHHHHHH-----HHTTSS-HHHHHHHHHHHHH
T ss_pred HHhHHhchhHHHHHH-----HHhCCccHHHHHHHHHHHHH
Confidence 467777777777766 68899999999999998876
No 46
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=60.45 E-value=58 Score=29.16 Aligned_cols=108 Identities=12% Similarity=0.184 Sum_probs=73.3
Q ss_pred hhhhccCCCchHHHHHHHhhCHH-HHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccC---
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESIS-VDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELK--- 100 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~-~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~--- 100 (137)
++|+. .....+..|-.+-. +-+++.......-+|-+..-.+-|.++++-+..|.++=+++...--.+.|+++
T Consensus 19 ~~wgA----QTqRs~~nF~ig~~~mp~~~I~Al~~lKkaaA~~N~~LG~L~~~~a~aI~~Aadev~~Gk~d~~FPl~VwQ 94 (462)
T COG0114 19 ALWGA----QTQRSLENFPIGGEKMPREIIRALGLLKKAAAQVNADLGLLDPEKADAIIAAADEVLAGKHDDHFPLDVWQ 94 (462)
T ss_pred HHHHH----HHHHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCcccCCCCeEEEe
Confidence 78984 22235666765444 66788888888888999999999999999999999999998774334555531
Q ss_pred -----CCCchHHHHHHHHHHHHhC-cccc--ccc------ccccchhhcC
Q psy16111 101 -----VELEDIHMNIESELIRRIG-NVGR--KLH------TGKTLKALLL 136 (137)
Q Consensus 101 -----~~~EDih~~iE~~L~e~~G-~~gg--~lH------tGRSRNDqva 136 (137)
.+.=-+-..|=.+-++.+| +.|. .+| .+-|.||-.-
T Consensus 95 TGSGTqsNMN~NEVIanrA~e~~gg~~g~~~~VHPNDhVN~sQSSNDtfP 144 (462)
T COG0114 95 TGSGTQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFP 144 (462)
T ss_pred cCCCccccccHHHHHHHHHHHHhCcccCCCCCCCCCCcCCcccccCcchh
Confidence 1122334445566677777 3442 344 5677787654
No 47
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=60.03 E-value=25 Score=24.36 Aligned_cols=63 Identities=10% Similarity=0.102 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCcc------cCCCCchHHHHHHHHHHHHhCcccccccccccchhh
Q psy16111 72 IIDEQDKELIVKTLKDIEYDIEHGKVE------LKVELEDIHMNIESELIRRIGNVGRKLHTGKTLKAL 134 (137)
Q Consensus 72 IIs~~ea~~I~~aL~~l~~~~~~g~~~------~~~~~EDih~~iE~~L~e~~G~~gg~lHtGRSRNDq 134 (137)
+||.+-...|.+.+..+....-...+. .+....++|.+++.||..++...+++|-.++++|..
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~~g~~~N~ly~a~~~YL~s~~s~~a~rL~~~~~~~~~ 69 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEFDGLSRNELYDAAQAYLSSKISPSARRLKASKSKNSK 69 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeCCCccccHHHHHHHHHHhhccCcccceeeecccCCCC
Confidence 355555555666665554422222221 134567999999999999999878999999998864
No 48
>PRK13666 hypothetical protein; Provisional
Probab=56.50 E-value=23 Score=25.14 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=28.3
Q ss_pred HHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy16111 48 VDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDI 88 (137)
Q Consensus 48 ~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l 88 (137)
+|..||...-.++.| .+.|+|+.+++++|+..|++=
T Consensus 46 lDTQmfGlSreVdFA-----vrlgli~~~~Gk~ll~~LE~~ 81 (92)
T PRK13666 46 LDTQMFGLSREVDFA-----VRLGLIDEEEGKQLLSRLERE 81 (92)
T ss_pred HHHHHhhhHHHHHHH-----HHhccccHHHHHHHHHHHHHH
Confidence 467777776666666 578999999999999888763
No 49
>PF09920 DUF2150: Uncharacterized protein conserved in archaea (DUF2150); InterPro: IPR014518 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=49.31 E-value=1.1e+02 Score=24.37 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=45.6
Q ss_pred HHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHHh
Q psy16111 53 YREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118 (137)
Q Consensus 53 ~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~~ 118 (137)
+..|+.+..+-++.+.+.|-||+++|...+...+.|-.. ...+..||.-..|+..-+..+
T Consensus 39 ~~dDv~lA~lKIi~~~~~~~l~keeAl~~L~~v~eIVl~------ev~~~~Ed~~~~i~~vQ~SL~ 98 (190)
T PF09920_consen 39 FQDDVILACLKIIAAYQNGELSKEEALEELEEVREIVLS------EVDFDDEDKDMMIDSVQTSLV 98 (190)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc------CCCCCchHHHHHHHHHHHHHH
Confidence 456788888999999999999999999999999987664 123446777666666544443
No 50
>PF01756 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-CoA oxidase (ACO) acts on CoA derivatives of fatty acids with chain lengths from 8 to 18. It catalyses the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids []. Acyl-CoA oxidase is a homodimer and the polypeptide chain of the subunit is folded into the N-terminal alpha-domain, beta-domain, and C-terminal alpha-domain []. Functional differences between the peroxisomal acyl-CoA oxidases and the mitochondrial acyl-CoA dehydrogenases are attributed to structural differences in the FAD environments []. Experimental data indicate that, in the pumpkin, the expression pattern of ACOX is very similar to that of the glyoxysomal enzyme 3-ketoacyl-CoA thiolase []. In humans, defects in ACOX1 are the cause of pseudoneonatal adrenoleukodystrophy, also known as peroxisomal acyl-CoA oxidase deficiency. Pseudo-NALD is a peroxisomal single-enzyme disorder. Clinical features include mental retardation, leukodystrophy, seizures, mild hepatomegaly and hearing deficit. Pseudo-NALD is characterised by increased plasma levels of very-long chain fatty acids due to a decrease in, or absence of, peroxisome acyl-CoA oxidase activity, despite the peroxisomes being intact and functioning. This entry represents the Acyl-CoA oxidase C-terminal.; GO: 0003997 acyl-CoA oxidase activity, 0006635 fatty acid beta-oxidation, 0055114 oxidation-reduction process, 0005777 peroxisome; PDB: 2FON_A 1IS2_B 2DDH_A 1W07_B.
Probab=49.24 E-value=90 Score=23.67 Aligned_cols=59 Identities=7% Similarity=-0.002 Sum_probs=42.6
Q ss_pred hcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCc---------------ccCCCCchHHHHHHHHHHHH
Q psy16111 59 GSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKV---------------ELKVELEDIHMNIESELIRR 117 (137)
Q Consensus 59 ~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~---------------~~~~~~EDih~~iE~~L~e~ 117 (137)
.-.-|.-.+.+.|+||.+.+..|.+.+.++...+.+..+ ++....+|||.++-.+....
T Consensus 92 ~i~~~~g~fl~~g~ls~~~~~~l~~~i~~l~~~lrp~av~LVDAF~~~D~~L~S~iG~~DG~vYe~l~~~a~~~ 165 (187)
T PF01756_consen 92 IIEENAGDFLEHGYLSPEQIKALRKAIEELCAELRPNAVALVDAFDFPDFFLNSPIGRYDGDVYEALFEWAKKS 165 (187)
T ss_dssp HHHHTHHHHHHTTSS-HHHHHHHHHHHHHHHHHHGGGHHHHHHTT---HHHHT-STT-TT--HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCcCCHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHcChhccccchHHHHHHHHHHHC
Confidence 335567778899999999999999999999888777553 24556788888887775554
No 51
>PF14164 YqzH: YqzH-like protein
Probab=40.49 E-value=83 Score=20.85 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=29.3
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCchHHHHHHHHHHH
Q psy16111 69 ERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIR 116 (137)
Q Consensus 69 ~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e 116 (137)
+.-=+|+.+.+.|.+.+...... ...+|+|..||..+=+
T Consensus 22 ~~~pls~~E~~~L~~~i~~~~~~---------~~~~Dl~eiVeDvVY~ 60 (64)
T PF14164_consen 22 ECMPLSDEEWEELCKHIQERKNE---------EPDEDLHEIVEDVVYD 60 (64)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhc---------CCCchHHHHHHHHHHH
Confidence 44567889999998888877664 3358999999976543
No 52
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=37.82 E-value=1e+02 Score=20.29 Aligned_cols=52 Identities=10% Similarity=0.045 Sum_probs=34.1
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHH-HHHHHHHHhcCCcccCCCCchHHHHHH
Q psy16111 60 SIAHVTMLGERNIIDEQDKELIVKT-LKDIEYDIEHGKVELKVELEDIHMNIE 111 (137)
Q Consensus 60 ~~AH~~mL~~~GIIs~~ea~~I~~a-L~~l~~~~~~g~~~~~~~~EDih~~iE 111 (137)
-++.++.|.++|.||-..|+.|+.- ...+......-.++++-+.||+-.-+|
T Consensus 22 r~~~Ai~lY~~g~iS~gkAAelag~s~~eF~~~L~~~gI~~~~~~eel~~dle 74 (76)
T PF03683_consen 22 REELAIKLYEEGKISLGKAAELAGMSRWEFLELLKERGIPINYDEEELEEDLE 74 (76)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 4577899999999999999998653 223333333344556666666644443
No 53
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=29.69 E-value=1.1e+02 Score=21.03 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q psy16111 70 RNIIDEQDKELIVKTLKDIEYD 91 (137)
Q Consensus 70 ~GIIs~~ea~~I~~aL~~l~~~ 91 (137)
+.+.++++-+++.+-|+++.+.
T Consensus 9 ~viv~~~d~~~i~~rLD~iEeK 30 (77)
T PRK01026 9 QVVVDPKDFKEIQKRLDEIEEK 30 (77)
T ss_pred eeecCHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999886
No 54
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=29.10 E-value=80 Score=19.45 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=21.4
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHH
Q psy16111 66 MLGERNIIDEQDKELIVKTLKDIE 89 (137)
Q Consensus 66 mL~~~GIIs~~ea~~I~~aL~~l~ 89 (137)
.|.+.||-+.....+|++++++++
T Consensus 43 ~L~~lGI~~~~~r~kll~~i~~Lk 66 (66)
T PF07647_consen 43 DLKELGITNLGHRRKLLSAIQELK 66 (66)
T ss_dssp HHHHTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcC
Confidence 568999999999999999998874
No 55
>KOG3520|consensus
Probab=29.06 E-value=2.3e+02 Score=28.50 Aligned_cols=41 Identities=15% Similarity=0.147 Sum_probs=31.6
Q ss_pred HHhHHHhhhhcHHHHHHH-----------HhcCCCCHHHHHHHHHHHHHHHH
Q psy16111 50 EVLYREDIAGSIAHVTML-----------GERNIIDEQDKELIVKTLKDIEY 90 (137)
Q Consensus 50 ~~L~~~di~~~~AH~~mL-----------~~~GIIs~~ea~~I~~aL~~l~~ 90 (137)
++.....+..-.+||.+| .+.+++++++...|-..|++|..
T Consensus 392 QEvI~EL~~TE~~HVRTLKIl~~vF~q~m~~e~~~~~~~l~~LFP~LdeL~e 443 (1167)
T KOG3520|consen 392 QEVIYELFQTERHHVRTLKILDRVFYQPMMEELLFPQEELNKLFPCLDELIE 443 (1167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHhcccHHHHHH
Confidence 444445567777888776 68899999999999888888755
No 56
>PF07812 TfuA: TfuA-like protein; InterPro: IPR012924 This domain consists of a group of sequences that are similar to the core of TfuA protein (Q52872 from SWISSPROT). This protein is involved in the production of trifolitoxin (TFX), a gene-encoded, post-translationally modified peptide antibiotic []. The role of TfuA in TFX synthesis is unknown, and it may be involved in other cellular processes [].
Probab=28.79 E-value=1e+02 Score=22.84 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy16111 61 IAHVTMLGERNIIDEQDKELIVKTLKDIE 89 (137)
Q Consensus 61 ~AH~~mL~~~GIIs~~ea~~I~~aL~~l~ 89 (137)
.+-+....+.|+|+++++..|++..+.+.
T Consensus 87 R~tl~~a~~~g~i~~~~~~~l~~~ak~l~ 115 (120)
T PF07812_consen 87 RATLRAAVRAGIISEEEAAALLAAAKSLY 115 (120)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhCC
Confidence 34455678999999999999999887763
No 57
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=28.08 E-value=63 Score=23.67 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=18.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHH
Q psy16111 66 MLGERNIIDEQDKELIVKTLK 86 (137)
Q Consensus 66 mL~~~GIIs~~ea~~I~~aL~ 86 (137)
-+.++|+||++.+++|.+...
T Consensus 3 ~w~~~GlI~~~q~~~i~~~~~ 23 (145)
T PF09925_consen 3 RWVEQGLITPEQAEAILAFYG 23 (145)
T ss_pred hHHHCCCCCHHHHHHHHHHhh
Confidence 468999999999999988776
No 58
>PF10335 DUF294_C: Putative nucleotidyltransferase substrate binding domain; InterPro: IPR018821 This entry is found associated with presumed nucleotidyltransferase domains and seems to be distantly related to other helical substrate binding domains.
Probab=27.07 E-value=1.2e+02 Score=22.24 Aligned_cols=30 Identities=13% Similarity=0.345 Sum_probs=24.8
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy16111 60 SIAHVTMLGERNIIDEQDKELIVKTLKDIE 89 (137)
Q Consensus 60 ~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~ 89 (137)
...=+..|.+.|+++++.+..+..++.-+.
T Consensus 64 T~eRl~~L~~~g~l~~~~~~~l~~A~~~l~ 93 (145)
T PF10335_consen 64 TLERLEALAEAGVLSPDDAEDLIEAFEFLL 93 (145)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 355567899999999999999999987653
No 59
>PF11950 DUF3467: Protein of unknown function (DUF3467); InterPro: IPR021857 This entry is represented by Bacteriophage 92, 0rf53. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and viruses. Proteins in this family are typically between 101 to 118 amino acids in length.
Probab=27.01 E-value=92 Score=21.43 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=20.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHh
Q psy16111 69 ERNIIDEQDKELIVKTLKDIEYDIE 93 (137)
Q Consensus 69 ~~GIIs~~ea~~I~~aL~~l~~~~~ 93 (137)
.+=++|+..|++|+.+|.+....++
T Consensus 60 sRVimsP~~AKrL~~aL~~~l~~YE 84 (92)
T PF11950_consen 60 SRVIMSPQHAKRLLKALQQNLQKYE 84 (92)
T ss_pred EEEEeCHHHHHHHHHHHHHHHHHHH
Confidence 3346899999999999999877654
No 60
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=26.79 E-value=3.1e+02 Score=23.88 Aligned_cols=63 Identities=24% Similarity=0.268 Sum_probs=42.0
Q ss_pred hhhcHHHHHHHHhcCCCCHHHHHHHHHHH---HHHHHHHhcCC-cccCCCCchHHHHHHHHHHHHhC
Q psy16111 57 IAGSIAHVTMLGERNIIDEQDKELIVKTL---KDIEYDIEHGK-VELKVELEDIHMNIESELIRRIG 119 (137)
Q Consensus 57 i~~~~AH~~mL~~~GIIs~~ea~~I~~aL---~~l~~~~~~g~-~~~~~~~EDih~~iE~~L~e~~G 119 (137)
..|-..-+....+||+|+.+|..+=..-| .++++..+..+ =.+.|++.|.-.-+=+.|.+.+.
T Consensus 120 ~~G~~~aLeAiidq~~i~~~e~~rq~~~l~~at~~ek~~g~a~~~yi~p~~~d~~~~~~~~l~~~~~ 186 (352)
T TIGR03282 120 TEGVIATLESAAEAGIIDEDEVERQKELLKKATEVEKKRGMAKREYIEPSYGDDKHKVAKRLVDLIQ 186 (352)
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHhchhhccccCCCCCccHHHHHHHHHHHHh
Confidence 45556677788999999999987643333 33444322211 13689999887777777777764
No 61
>COG4838 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.10 E-value=1.4e+02 Score=20.80 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=24.8
Q ss_pred HHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy16111 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEY 90 (137)
Q Consensus 49 D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~ 90 (137)
|..+|.-.-.++.| .+-|+|+++++++|+..|++=..
T Consensus 47 DTQMfGLsrEidFA-----vrLgLid~e~GKqll~~LEkeLs 83 (92)
T COG4838 47 DTQMFGLSREIDFA-----VRLGLIDEEDGKQLLSTLEKELS 83 (92)
T ss_pred HHHHhhhhhhhhHH-----HHhcccCHHHHHHHHHHHHHHHH
Confidence 44444443344433 56799999999999988876433
No 62
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=25.89 E-value=1.4e+02 Score=20.12 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy16111 72 IIDEQDKELIVKTLKDIEYD 91 (137)
Q Consensus 72 IIs~~ea~~I~~aL~~l~~~ 91 (137)
++++++-.++.+-|+++.+.
T Consensus 8 iv~~~~~~~i~~rLd~iEeK 27 (70)
T PF04210_consen 8 IVDPDDFNEIMKRLDEIEEK 27 (70)
T ss_pred eeCHHHHHHHHHHHHHHHHH
Confidence 56899999999999999886
No 63
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=24.86 E-value=1.5e+02 Score=19.94 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy16111 72 IIDEQDKELIVKTLKDIEYD 91 (137)
Q Consensus 72 IIs~~ea~~I~~aL~~l~~~ 91 (137)
+.++++-+++.+-|+++.+.
T Consensus 8 ~v~~~d~~~i~~rLd~iEeK 27 (70)
T TIGR01149 8 FVEPDEFNEVMKRLDEIEEK 27 (70)
T ss_pred ecCHHHHHHHHHHHHHHHHH
Confidence 56889999999999999886
No 64
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=24.36 E-value=2e+02 Score=19.52 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy16111 71 NIIDEQDKELIVKTLKDIEYD 91 (137)
Q Consensus 71 GIIs~~ea~~I~~aL~~l~~~ 91 (137)
=++++++..++.+-|+++.+.
T Consensus 10 v~v~~~dfne~~kRLdeieek 30 (75)
T COG4064 10 VVVDPDDFNEIHKRLDEIEEK 30 (75)
T ss_pred cccCHHHHHHHHHHHHHHHHH
Confidence 367899999999999999886
No 65
>PF10904 DUF2694: Protein of unknown function (DUF2694); InterPro: IPR024426 This family of proteins with unknown function appears to be restricted to Mycobacterium spp.
Probab=23.77 E-value=1.9e+02 Score=20.83 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCcc---cCCCCchHHHHHHHHHHHHh
Q psy16111 82 VKTLKDIEYDIEHGKVE---LKVELEDIHMNIESELIRRI 118 (137)
Q Consensus 82 ~~aL~~l~~~~~~g~~~---~~~~~EDih~~iE~~L~e~~ 118 (137)
++++..|+.++.+.... --|...|++-++|+.|..++
T Consensus 57 Lra~levR~eivaag~tpsa~vPT~~dL~~a~e~l~~h~l 96 (101)
T PF10904_consen 57 LRAQLEVREEIVAAGHTPSAQVPTEDDLDVAIERLLAHRL 96 (101)
T ss_pred HHHHHHHHHHHHHccCCccccCCChhhHHHHHHHHHHhhh
Confidence 45666676665543332 24778999999999998765
No 66
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=23.75 E-value=1.4e+02 Score=18.21 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=19.6
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHH
Q psy16111 67 LGERNIIDEQDKELIVKTLKDIE 89 (137)
Q Consensus 67 L~~~GIIs~~ea~~I~~aL~~l~ 89 (137)
|.+-||-......+|+.++.+++
T Consensus 42 L~~lgi~~~ghr~ki~~~i~~Lk 64 (64)
T PF00536_consen 42 LEELGITKLGHRKKILRAIQKLK 64 (64)
T ss_dssp HHHTT-SSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHhC
Confidence 77899999999999999998874
No 67
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=23.48 E-value=1.1e+02 Score=21.00 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=19.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q psy16111 70 RNIIDEQDKELIVKTLKDIEYD 91 (137)
Q Consensus 70 ~GIIs~~ea~~I~~aL~~l~~~ 91 (137)
..+|++++|+.+++.|+++...
T Consensus 57 i~~ideeeA~etl~~l~el~~~ 78 (82)
T PRK10413 57 MSIIDEDEAKATLDALRQMEYD 78 (82)
T ss_pred hhhCCHHHHHHHHHHHHHHHhh
Confidence 4579999999999999999754
No 68
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=23.43 E-value=1.1e+02 Score=25.47 Aligned_cols=47 Identities=17% Similarity=0.163 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-HhcCCcccCCCCchHHH
Q psy16111 62 AHVTMLGERNIIDEQDKELIVKTLKDIEYD-IEHGKVELKVELEDIHM 108 (137)
Q Consensus 62 AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~-~~~g~~~~~~~~EDih~ 108 (137)
-.-.-|.++|++++++...|.+...+-..+ +..-.-...|..++++.
T Consensus 264 ~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a~~~p~p~~~~~~~ 311 (315)
T TIGR03182 264 KLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPEPPVEELYT 311 (315)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHh
Confidence 344568999999999999998877664332 22111123566666643
No 69
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=23.01 E-value=1.4e+02 Score=17.99 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=16.3
Q ss_pred hcHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16111 59 GSIAHVTMLGERNIIDEQDKELIVKTL 85 (137)
Q Consensus 59 ~~~AH~~mL~~~GIIs~~ea~~I~~aL 85 (137)
|.+.=+....++|+|+ +++.++..|
T Consensus 4 GTlGiL~~Ak~~GlI~--~~~~~l~~l 28 (48)
T PF11848_consen 4 GTLGILLLAKRRGLIS--EVKPLLDRL 28 (48)
T ss_pred ehHHHHHHHHHcCChh--hHHHHHHHH
Confidence 4455566788999999 445444444
No 70
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=22.77 E-value=1.6e+02 Score=20.27 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=22.1
Q ss_pred HhhhhcHHHHHHHHhcCCCCHHHHHHHHH
Q psy16111 55 EDIAGSIAHVTMLGERNIIDEQDKELIVK 83 (137)
Q Consensus 55 ~di~~~~AH~~mL~~~GIIs~~ea~~I~~ 83 (137)
.++.++. +.--|..+||+|+++...|..
T Consensus 14 ~~l~~~~-l~d~L~q~~VLt~~d~EeI~~ 41 (86)
T cd08785 14 RKINPSR-LTPYLRQCKVLDEQDEEEVLS 41 (86)
T ss_pred HHhhHHH-HHHHHHhcCCCCHHHHHHHhC
Confidence 4455555 677899999999999988865
No 71
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=22.57 E-value=1.4e+02 Score=25.32 Aligned_cols=46 Identities=7% Similarity=0.104 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHH-HhcCCcccCCCCchHHH
Q psy16111 63 HVTMLGERNIIDEQDKELIVKTLKDIEYD-IEHGKVELKVELEDIHM 108 (137)
Q Consensus 63 H~~mL~~~GIIs~~ea~~I~~aL~~l~~~-~~~g~~~~~~~~EDih~ 108 (137)
.-..|.++|++++++...|.+.+.+...+ +..-.=...|..++++.
T Consensus 290 ~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~~~~~~ 336 (341)
T CHL00149 290 LKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPEPNISDLKK 336 (341)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHh
Confidence 34568899999999999998887764333 11111123466666644
No 72
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=22.03 E-value=4.4e+02 Score=21.46 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=48.0
Q ss_pred chHHHHHHHhhCHHHH----HHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Q psy16111 34 SMNEFLQQFNESISVD----EVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVEL 103 (137)
Q Consensus 34 ~~~~~~~~f~~s~~~D----~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~ 103 (137)
-|+..+..|+..+... .++.+.-|+-...-+..|.+..|+.+..++.|.+-=++.++....|.+...|..
T Consensus 92 iPa~ifyeyV~diR~RinkGlRvAE~~i~eA~~~~~~~~~~~i~~e~igk~I~~lR~KYR~alR~GiLDSapDl 165 (221)
T COG1458 92 IPAAIFYEYVEDIRERINKGLRVAEEAIREASIECYELEKEEIIREVVGKIIRKLREKYREALRKGILDSAPDL 165 (221)
T ss_pred CcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 4666788887655543 445555566666666777788888888877777777778888888877554443
No 73
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=21.97 E-value=1.5e+02 Score=17.54 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.2
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy16111 65 TMLGERNIIDEQDKELIVKTLKDIEY 90 (137)
Q Consensus 65 ~mL~~~GIIs~~ea~~I~~aL~~l~~ 90 (137)
..|.+.||-+.....+|+.++..+..
T Consensus 42 ~~l~~lgi~~~~~r~~ll~~i~~l~~ 67 (68)
T smart00454 42 EDLKELGITKLGHRKKILKAIQKLKD 67 (68)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHh
Confidence 45788999999999999999998764
No 74
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=21.65 E-value=2.1e+02 Score=21.78 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy16111 61 IAHVTMLGERNIIDEQDKELIVKTLKDIEYD 91 (137)
Q Consensus 61 ~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~ 91 (137)
.+-+..|.+.| +|++.|..|..++..+...
T Consensus 5 ~~~v~~Le~~G-ft~~QAe~i~~~l~~~l~~ 34 (177)
T PF07798_consen 5 HKFVKRLEAAG-FTEEQAEAIMKALREVLND 34 (177)
T ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHHHHHHH
Confidence 35678888888 6999999999998887654
No 75
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=20.40 E-value=1.7e+02 Score=19.76 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=19.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q psy16111 70 RNIIDEQDKELIVKTLKDIEYD 91 (137)
Q Consensus 70 ~GIIs~~ea~~I~~aL~~l~~~ 91 (137)
...|++++|+.+++.|+++...
T Consensus 50 i~~ide~eA~e~l~~l~el~~~ 71 (76)
T TIGR00074 50 ISVLDEEEARETLDALQELFDA 71 (76)
T ss_pred hhhCCHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999765
No 76
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=20.38 E-value=3.9e+02 Score=21.83 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=41.5
Q ss_pred hhhhccCCCchHHH----------HHHHhhCHHHHHHhHHH-hhhhcHHHHHHHHhcC-------CCCHHHHHHHHHHHH
Q psy16111 25 QLWTGCFQQSMNEF----------LQQFNESISVDEVLYRE-DIAGSIAHVTMLGERN-------IIDEQDKELIVKTLK 86 (137)
Q Consensus 25 ~lw~gR~~~~~~~~----------~~~f~~s~~~D~~L~~~-di~~~~AH~~mL~~~G-------IIs~~ea~~I~~aL~ 86 (137)
.+|+||-+-.+... +..-.+---+|...+.. .-.-..|+-. |.+.| .|+.+.+..|...|+
T Consensus 13 ~~wsgrkkl~~~Dl~~~~~lpp~~laslGsKri~dp~~L~~f~~lk~~A~r~-~~~~G~rFlgG~aVP~~~~~~l~~~L~ 91 (257)
T PF11348_consen 13 SIWSGRKKLRAEDLGLGDELPPEDLASLGSKRICDPDALKPFSKLKKRAERL-CLKVGVRFLGGYAVPEDKAEELAEELE 91 (257)
T ss_pred eeccCCcccCHHHhcccccCCHHHHHhcCceeeeChHHcCHHHHHHHHHHHH-HHHcCCcccceeEcCHHHHHHHHHHHH
Confidence 47888877555332 22222233345443332 2333444443 34555 489999999999999
Q ss_pred HHHHHHhcC
Q psy16111 87 DIEYDIEHG 95 (137)
Q Consensus 87 ~l~~~~~~g 95 (137)
.|..++...
T Consensus 92 ~i~~eF~~~ 100 (257)
T PF11348_consen 92 DIKTEFEQE 100 (257)
T ss_pred HHHHHHHHH
Confidence 999986544
No 77
>COG2306 Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]
Probab=20.25 E-value=2.4e+02 Score=22.34 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=30.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCccc
Q psy16111 63 HVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVEL 99 (137)
Q Consensus 63 H~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~ 99 (137)
-+.|=-+.|+||++.+.+-......+..++..|.|..
T Consensus 127 EL~~Al~~GlIT~~qf~~Ay~~a~aVe~elr~g~~~~ 163 (183)
T COG2306 127 ELEDALRYGLITPEQFEKAYRTANAVEAELRNGKFPP 163 (183)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 3445568899999999999999999999988887643
Done!