Query psy16111
Match_columns 137
No_of_seqs 119 out of 1060
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 21:10:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tj7_A Argininosuccinate lyase 99.9 7.1E-26 2.4E-30 194.9 9.2 113 25-137 2-115 (457)
2 2e9f_A Argininosuccinate lyase 99.9 2.7E-25 9.1E-30 191.6 7.0 113 25-137 4-116 (462)
3 1k7w_A Delta 2 crystallin; eye 99.9 3.1E-24 1.1E-28 185.2 9.7 114 24-137 8-121 (468)
4 1fur_A Fumarase C, FUMC; hydro 99.7 1E-18 3.5E-23 150.9 5.6 109 25-137 20-146 (467)
5 1vdk_A Fumarase C, fumarate hy 99.7 1.3E-18 4.5E-23 150.1 6.0 109 25-137 19-146 (466)
6 1jsw_A L-aspartase, L-aspartat 99.7 7.6E-18 2.6E-22 145.7 3.7 109 25-137 21-150 (478)
7 1yfm_A Fumarase, YFUM; lyase, 99.7 2.3E-17 7.8E-22 143.4 4.5 109 25-137 44-171 (488)
8 2qga_B Adenylosuccinate lyase; 99.7 2.9E-18 9.9E-23 147.7 -2.6 106 25-137 9-128 (465)
9 3bhg_A Adenylosuccinate lyase; 99.6 3.7E-17 1.3E-21 140.6 3.6 106 25-137 13-132 (459)
10 1q5n_A 3-carboxy-CIS,CIS-mucon 99.6 1.2E-16 4.1E-21 137.1 3.3 105 25-137 6-116 (454)
11 3c8t_A Fumarate lyase; structu 99.6 1.9E-15 6.6E-20 129.6 8.6 102 25-137 6-110 (451)
12 4adm_A Fumarase C, fumarate hy 99.6 1.4E-15 4.7E-20 132.5 5.3 107 25-137 48-167 (495)
13 2ptr_A Adenylosuccinate lyase; 99.5 1.5E-15 5.1E-20 130.7 2.7 104 25-137 10-129 (462)
14 1dof_A Adenylosuccinate lyase; 99.5 1.4E-14 4.6E-19 122.9 3.9 95 26-137 5-102 (403)
15 1c3c_A Protein (adenylosuccina 99.5 4.7E-14 1.6E-18 120.2 6.5 81 49-137 15-99 (429)
16 2pfm_A Adenylosuccinate lyase; 99.4 6.2E-14 2.1E-18 120.1 5.8 86 44-137 20-111 (444)
17 1re5_A 3-carboxy-CIS,CIS-mucon 99.4 3.1E-13 1.1E-17 115.7 6.0 82 48-137 20-112 (450)
18 3r6q_A Aspartase; aspartate am 99.4 5E-13 1.7E-17 115.6 6.7 101 37-137 29-147 (468)
19 2fel_A 3-carboxy-CIS,CIS-mucon 99.3 2.1E-13 7.2E-18 114.2 1.7 105 25-137 9-114 (359)
20 4eei_A Adenylosuccinate lyase; 99.3 2.2E-12 7.7E-17 110.5 5.5 80 49-137 16-100 (438)
21 1yis_A Adenylosuccinate lyase; 99.3 9.3E-13 3.2E-17 113.6 2.4 102 25-135 9-112 (478)
22 3ocf_A Fumarate lyase:delta cr 99.3 5.9E-12 2E-16 109.2 7.3 100 38-137 48-167 (478)
23 2j91_A Adenylosuccinate lyase; 99.1 9.4E-12 3.2E-16 108.3 1.6 101 25-135 37-138 (503)
24 3e04_A Fumarase, fumarate hydr 99.1 1.5E-10 5.1E-15 100.8 6.6 99 38-137 55-173 (490)
25 3gtd_A Fumarase C, fumarate hy 99.0 3.2E-10 1.1E-14 98.5 7.2 100 38-137 50-167 (482)
26 4hgv_A Fumarase C, fumarate hy 97.9 2.1E-05 7.1E-10 68.4 7.3 100 38-137 61-178 (495)
27 2odm_A YLAN, UPF0358 protein M 70.0 9.1 0.00031 26.1 5.0 39 47-90 44-82 (91)
28 2gbo_A UPF0358 protein EF2458; 64.8 11 0.00037 26.3 4.6 37 48-89 47-83 (104)
29 3exm_A Phosphatase SC4828; nuc 55.4 12 0.00042 29.5 4.0 38 68-105 175-212 (237)
30 3t98_B Nucleoporin NUP58/NUP45 34.7 64 0.0022 21.7 4.5 74 33-113 4-77 (93)
31 3fxd_A Protein ICMQ; helix bun 26.3 65 0.0022 20.0 3.1 20 72-91 4-23 (57)
32 3bqs_A Uncharacterized protein 22.8 1.7E+02 0.0058 19.3 6.0 49 59-114 12-62 (93)
33 2gle_A Neurabin-1; SAM domain, 22.5 87 0.003 19.1 3.3 27 67-93 46-72 (74)
34 3anw_B GINS23, putative unchar 22.3 1.4E+02 0.0047 22.2 4.9 53 64-117 39-92 (171)
35 3eq5_A SKI-like protein; TGF-b 21.8 26 0.00089 25.1 0.7 30 57-86 82-121 (125)
No 1
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=99.92 E-value=7.1e-26 Score=194.93 Aligned_cols=113 Identities=29% Similarity=0.523 Sum_probs=107.5
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccC-CCC
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELK-VEL 103 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~-~~~ 103 (137)
++|+|||++.+++.+..|+.|+.||++|++++|.+++||+.||.+.|+||++++..|.++++++...+..+.|+++ +..
T Consensus 2 ~~~~gr~~~~~~~~~~~f~~s~~~d~~l~~~~i~~~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~ 81 (457)
T 1tj7_A 2 ALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALNVLLEDVRARPQQILESDA 81 (457)
T ss_dssp -CCCTTCSSCCCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHCGGGGGGSCC
T ss_pred cccccccccchHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHhcCCcCcCCCCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999887778888887 789
Q ss_pred chHHHHHHHHHHHHhCcccccccccccchhhcCC
Q psy16111 104 EDIHMNIESELIRRIGNVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 104 EDih~~iE~~L~e~~G~~gg~lHtGRSRNDqvat 137 (137)
+|+|+++|++|++++|+.|+++|+||||||++.|
T Consensus 82 ~dv~~~v~~~l~e~~g~~g~~vH~g~SsnD~~~T 115 (457)
T 1tj7_A 82 EDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVAT 115 (457)
T ss_dssp SSHHHHHHHHHHHHHGGGGGGTTTTCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHccccccceecCCChhhHHHH
Confidence 9999999999999999999999999999999865
No 2
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=2.7e-25 Score=191.58 Aligned_cols=113 Identities=34% Similarity=0.578 Sum_probs=99.5
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCc
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~E 104 (137)
++|+|||++.++..++.|..|+.+|++++++++.+.+||+.||.+.|+||++++.+|.+++++|......+.|++++..+
T Consensus 4 ~~~g~r~~~~t~~~~~~f~~s~~~d~~l~~~~i~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~~~~ 83 (462)
T 2e9f_A 4 RTWGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKGLDRIEEEIEAGTFPWREELE 83 (462)
T ss_dssp ----------CCSHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTCSCCCGGGC
T ss_pred cccCCccchhhHHHHHhccCCCccCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHhcccCCcCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999887888899988999
Q ss_pred hHHHHHHHHHHHHhCcccccccccccchhhcCC
Q psy16111 105 DIHMNIESELIRRIGNVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 105 Dih~~iE~~L~e~~G~~gg~lHtGRSRNDqvat 137 (137)
|+|+++|++|++++|+.|+++|+||||||++.|
T Consensus 84 dv~~~~~~~l~e~~g~~g~~vH~g~SsnDv~~T 116 (462)
T 2e9f_A 84 DVHMNLEARLTELVGPPGGKLHTARSRNDQVAT 116 (462)
T ss_dssp SHHHHHHHHHHHHHCTTHHHHTTTCCHHHHHHH
T ss_pred chHHHHHHHHHHHccccccceecCCChhhHHHH
Confidence 999999999999999999999999999999865
No 3
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=99.90 E-value=3.1e-24 Score=185.19 Aligned_cols=114 Identities=32% Similarity=0.493 Sum_probs=99.5
Q ss_pred hhhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Q psy16111 24 KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVEL 103 (137)
Q Consensus 24 ~~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~ 103 (137)
.++|+|||++.+...+..|..|+.+|..++++++.+.+||+.||.+.|+||++++..|.+++++|......+.|++++..
T Consensus 8 ~~~~~~r~~~~~~~~~~~f~~s~~~d~~~~~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~~~ 87 (468)
T 1k7w_A 8 DKLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFVVKQSD 87 (468)
T ss_dssp -----------CCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTCCCCCTTC
T ss_pred ccccccccchhHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhhhcccCccCCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999988788889999999
Q ss_pred chHHHHHHHHHHHHhCcccccccccccchhhcCC
Q psy16111 104 EDIHMNIESELIRRIGNVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 104 EDih~~iE~~L~e~~G~~gg~lHtGRSRNDqvat 137 (137)
+|+|+++|++|++++|+.|+++|+||||||++.|
T Consensus 88 ~dv~m~~~~~l~e~~g~~g~~vH~g~SsnDv~~T 121 (468)
T 1k7w_A 88 EDIHTANERRLKELIGDIAGKLHTGRSRNDQVVT 121 (468)
T ss_dssp CSHHHHHHHHHHHHHCGGGGGGGTTCCHHHHHHH
T ss_pred CchHHHHHHHHHHHccccccceecCCChhhHHHH
Confidence 9999999999999999999999999999999865
No 4
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=99.74 E-value=1e-18 Score=150.87 Aligned_cols=109 Identities=15% Similarity=0.222 Sum_probs=98.7
Q ss_pred hhhhccCCCchHHHHHHHhhCHHH-HHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC--
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESISV-DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV-- 101 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~~-D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~-- 101 (137)
++|++ .+...+++|..|..+ |..++++++.+.+||+.||.+.|+||++++.+|.+++++|......+.|.+++
T Consensus 20 ~~~g~----~t~r~~~~f~~s~~~~~~~~i~a~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~~q 95 (467)
T 1fur_A 20 KLWGA----QTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQ 95 (467)
T ss_dssp CCCCH----HHHHHHHHCCCSSCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTTTGGGCCCBSSS
T ss_pred cccch----hhHHHHHhccCCCccCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccccccchhhh
Confidence 69997 778899999999888 99999999999999999999999999999999999999998765667777766
Q ss_pred --CCchHHHHHHHHH----HHHhC-ccccc--cc------ccccchhhcCC
Q psy16111 102 --ELEDIHMNIESEL----IRRIG-NVGRK--LH------TGKTLKALLLP 137 (137)
Q Consensus 102 --~~EDih~~iE~~L----~e~~G-~~gg~--lH------tGRSRNDqvat 137 (137)
..+|+|+++|..| ++++| +.|++ +| +||||||++.|
T Consensus 96 ~g~~~~~~mn~~~via~~a~e~~G~~~g~~~~lHp~~~Vn~g~SsnD~~~T 146 (467)
T 1fur_A 96 TGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPT 146 (467)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHTTCCSSTTCSSCCCCCCTTTCCHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHhCcccccccccCchhhcccCCChhhHHHH
Confidence 6799999999966 89999 78888 99 99999999875
No 5
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1
Probab=99.74 E-value=1.3e-18 Score=150.10 Aligned_cols=109 Identities=15% Similarity=0.167 Sum_probs=98.9
Q ss_pred hhhhccCCCchHHHHHHHhhCHH-H--HHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESIS-V--DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV 101 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~-~--D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~ 101 (137)
++|++ .+...+++|..|.. + |..++.+++.+.+||+.||.+.|+||++++.+|.+++++|......+.|++++
T Consensus 19 ~~~g~----~t~~~~~~f~~s~~~~~~~~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~ 94 (466)
T 1vdk_A 19 KYWGA----QTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVV 94 (466)
T ss_dssp CCCCH----HHHHHHHHCCSSTTTCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTTTGGGCCCBS
T ss_pred cccch----hhHHHHHhccCCCccccCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccccCCCchh
Confidence 68987 78889999998866 6 89999999999999999999999999999999999999998876667788877
Q ss_pred ----CCchHHHHHHHHH----HHHhC-ccc-cccc------ccccchhhcCC
Q psy16111 102 ----ELEDIHMNIESEL----IRRIG-NVG-RKLH------TGKTLKALLLP 137 (137)
Q Consensus 102 ----~~EDih~~iE~~L----~e~~G-~~g-g~lH------tGRSRNDqvat 137 (137)
..+|+|+++|..+ ++++| +.| +++| +||||||++.|
T Consensus 95 ~q~~~~~~~~mn~~~via~~a~e~~g~~~g~~~lHp~~~Vn~g~SsnD~~~T 146 (466)
T 1vdk_A 95 FQTGSGTQTNMNVNEVIANRASEILGKPLGSKYAHPNDHVNRGQSSNDTFPT 146 (466)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHHHHTTCCTTSCSSCCCCCCTTTCCHHHHHHH
T ss_pred hhccccccccccHHHHHHHHHHHHhCccccccccccccCcCCCCChhhHHHH
Confidence 7899999999987 99999 678 9999 99999999875
No 6
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=99.69 E-value=7.6e-18 Score=145.72 Aligned_cols=109 Identities=12% Similarity=0.073 Sum_probs=96.1
Q ss_pred hhhhccCCCchHHHHHHHhhCH-HH--HHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HHHhcCCcccC
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESI-SV--DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIE-YDIEHGKVELK 100 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~-~~--D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~-~~~~~g~~~~~ 100 (137)
++|++ .....++.|..|. .+ |..++++++.+.+||+.||.+.|+||++++.+|.+++++|. +....+.|+++
T Consensus 21 ~~~g~----~t~r~~~~f~~s~~~~~~~~~~i~~~~~ve~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~~f~v~ 96 (478)
T 1jsw_A 21 AYYGV----HTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVD 96 (478)
T ss_dssp CCCCH----HHHHHHHHCCSCSCCSCCTTSHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHSTTTCSTTCCCCC
T ss_pred cccch----HHHHHHHhCCCcCccccCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcchhccCCccc
Confidence 68987 3777899999774 56 89999999999999999999999999999999999999998 76566778888
Q ss_pred C----CCchHHHHHHH----HHHHHhCc-ccc--ccc------ccccchhhcCC
Q psy16111 101 V----ELEDIHMNIES----ELIRRIGN-VGR--KLH------TGKTLKALLLP 137 (137)
Q Consensus 101 ~----~~EDih~~iE~----~L~e~~G~-~gg--~lH------tGRSRNDqvat 137 (137)
+ ..+|+|+++|. ++++++|+ .|+ ++| +||||||++.|
T Consensus 97 ~~~~g~~~~~~mnv~~vIa~~~~e~~g~~~g~~~~lHpnd~Vn~g~SsnDv~~T 150 (478)
T 1jsw_A 97 VYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPT 150 (478)
T ss_dssp SSCCSTTHHHHHHHHHHHHHHHHHTTTSCCTTSCSSCCCCCCSCSCCHHHHHHH
T ss_pred hhhccCcccccccHHHHHHHHHHHHcCccccccccccccccccCCCChhhHHHH
Confidence 7 78999999996 77899994 676 898 89999999875
No 7
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=99.67 E-value=2.3e-17 Score=143.41 Aligned_cols=109 Identities=13% Similarity=0.156 Sum_probs=91.9
Q ss_pred hhhhccCCCchHHHHHHHhhCHH---HHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESIS---VDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV 101 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~---~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~ 101 (137)
++|++ .+...+++|..|.. +|..++++++.+.+||+.|+.+.|+|+++++.+|.+++++|......+.|++++
T Consensus 44 ~~~g~----~t~r~~~~f~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~Gil~~~~a~aI~~a~~ei~~~~~~~~f~~~~ 119 (488)
T 1yfm_A 44 KYWGA----QTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAADEVASGKLDDHFPLVV 119 (488)
T ss_dssp CCCCH----HHHHHHTTCCTTGGGGBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTSSGGGCCCBS
T ss_pred chhch----HHHHHHHhccCCCCcccCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccccCCCcch
Confidence 69987 77889999999887 589999999999999999999999999999999999999998865567788877
Q ss_pred ----CCchHHHHHHHHH----HHHhC-ccc-cccc------ccccchhhcCC
Q psy16111 102 ----ELEDIHMNIESEL----IRRIG-NVG-RKLH------TGKTLKALLLP 137 (137)
Q Consensus 102 ----~~EDih~~iE~~L----~e~~G-~~g-g~lH------tGRSRNDqvat 137 (137)
..+|+|+++|..| ++.+| +.| +++| +||||||++.|
T Consensus 120 ~q~g~~t~~nmn~~evia~~a~e~lG~~~g~~~vHp~d~Vn~g~SsNDv~~T 171 (488)
T 1yfm_A 120 FQTGSGTQSNMNANEVISNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFPT 171 (488)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHHHC---------CCCCCCCTTTCCHHHHHHH
T ss_pred hhccccccccccHHHHHHHHHHHHhCccccCCccCcccCcCCCCChhhHHHH
Confidence 7899999999976 48889 677 9999 99999999875
No 8
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=99.66 E-value=2.9e-18 Score=147.74 Aligned_cols=106 Identities=12% Similarity=0.196 Sum_probs=84.1
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHhcCCcc----c
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGER-NIIDEQDKELIVKTLKDIEYDIEHGKVE----L 99 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~-GIIs~~ea~~I~~aL~~l~~~~~~g~~~----~ 99 (137)
.+|+|||.+++++. .++-+|..++++++.+++||+.||.++ |||++.++..|. +|.++..++..+.+. +
T Consensus 9 s~~~gRy~~~~~~~-----~~~~sd~~~~~~~i~ve~A~~~ala~~~gii~~~~~~~i~-~l~~~~~~~~~~d~~~i~~~ 82 (465)
T 2qga_B 9 SPIDGRYKKACGEL-----SAFFSEHALIKHRIIVEVRWLLFLNEEELFFEKVTDHSVE-VLNQIATNITDSDIARVKAI 82 (465)
T ss_dssp STTTTTTHHHHGGG-----GGTSSHHHHHHHHHHHHHHHHHHHHHHTSSSCCCCHHHHH-HHHHHHHCCCHHHHHHHHHH
T ss_pred CcccccccCCcHHH-----HHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHHHhhccccHHHHHHH
Confidence 47999999876663 223358999999999999999999999 999999988887 455554433222211 1
Q ss_pred -CCCCchHHHHHHHHHHHHhC--------cccccccccccchhhcCC
Q psy16111 100 -KVELEDIHMNIESELIRRIG--------NVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 100 -~~~~EDih~~iE~~L~e~~G--------~~gg~lHtGRSRNDqvat 137 (137)
....+|| +++|++|++++| ++|+++|+||||||++.|
T Consensus 83 e~~~~hDV-~a~e~~l~e~~g~~~~~~~~~~~~~iH~g~SsnDv~~T 128 (465)
T 2qga_B 83 EEETNHDV-KAVEYFVKEKLKNSKREDLLKIKEYVHYLCTSEDINNV 128 (465)
T ss_dssp HHHHSCHH-HHHHHHHHHHHHTSCCHHHHHHGGGTTTTCCHHHHHHH
T ss_pred hhccCCCh-HHHHHHHHHHhcccccccchhhhhhccCCCChhhHHHH
Confidence 2357999 999999999998 679999999999999865
No 9
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=99.65 E-value=3.7e-17 Score=140.63 Aligned_cols=106 Identities=13% Similarity=0.132 Sum_probs=86.2
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhc-CC-----CCHHHHHHHHHHHHHHHHH-Hh-cCC
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGER-NI-----IDEQDKELIVKTLKDIEYD-IE-HGK 96 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~-GI-----Is~~ea~~I~~aL~~l~~~-~~-~g~ 96 (137)
.+|+|||.+++++....|. |..++++++.+++||+.||.++ || ||++++..|.+++.++... +. -.+
T Consensus 13 s~~~gRy~~~~~~~~~~fs-----d~~~~~~~l~ve~a~~~ala~~~gi~~ip~i~~~~~~~i~~~~~~~~~~d~~~~~~ 87 (459)
T 3bhg_A 13 SPIDGRYVNKTRALSPYFS-----EFALTYYRLMVEIKWFESLAANDTIPEVPALDNKARKFLSDLISNFNESEAEKIKE 87 (459)
T ss_dssp STTTTTTHHHHGGGTTTSS-----HHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCCHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CcccccccCChHHHHHHcC-----HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhccccHHHHHH
Confidence 5799999987666666665 8999999999999999999999 88 5699999999998766221 00 000
Q ss_pred cccCCCCchHHHHHHHHHHHHhCc------ccccccccccchhhcCC
Q psy16111 97 VELKVELEDIHMNIESELIRRIGN------VGRKLHTGKTLKALLLP 137 (137)
Q Consensus 97 ~~~~~~~EDih~~iE~~L~e~~G~------~gg~lHtGRSRNDqvat 137 (137)
+ .....+|| .++|.+|++++|+ +|+++|+||||||++.|
T Consensus 88 ~-e~~~~~Dv-~a~e~~l~e~~g~~~~~~~~~~~iH~g~SsnDv~~T 132 (459)
T 3bhg_A 88 F-EKQTNHDV-KAVEYYLQDKFQENEQLKSCVAFIHFACTSEDINNL 132 (459)
T ss_dssp H-TTTCSSHH-HHHHHHHHHHHTTSTTGGGGGGGTTTTCCHHHHHHH
T ss_pred H-HHhcCCCh-HHHHHHHHHHhcccccCchhhhhhcCCCCHHhHHHH
Confidence 1 14568999 9999999999983 68999999999999875
No 10
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=99.62 E-value=1.2e-16 Score=137.09 Aligned_cols=105 Identities=16% Similarity=0.188 Sum_probs=84.5
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcc--cCCC
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVE--LKVE 102 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~--~~~~ 102 (137)
.+|+|||..+ .+..+ --|..++++++.+.+||+.||.+.|+||++++..|.+++++|...+..+.+. ....
T Consensus 6 ~~~~~ry~~~---~~~~~----~sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~ 78 (454)
T 1q5n_A 6 QLYASLFYQR---DVTEI----FSDRALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAIDKIDFDALATATGLA 78 (454)
T ss_dssp CTTHHHHSCH---HHHHH----TSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTHHHHCCHHHHHHHHHHH
T ss_pred CccccccCcH---HHHHH----cCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHhhcc
Confidence 5899999973 34332 2378899999999999999999999999999999999998554432211111 1236
Q ss_pred CchHHHHHHHHHHHHh----CcccccccccccchhhcCC
Q psy16111 103 LEDIHMNIESELIRRI----GNVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 103 ~EDih~~iE~~L~e~~----G~~gg~lHtGRSRNDqvat 137 (137)
.+|| .++|+.|++++ |+.|+++|+||||||++.|
T Consensus 79 ~~dV-ia~~~~l~e~~g~~~g~~~~~vH~g~SsnD~~~T 116 (454)
T 1q5n_A 79 GNIA-IPFVKQLTAIVKDADEDAARYVHWGATSQDILDT 116 (454)
T ss_dssp SSSH-HHHHHHHHHHHHTTCTTGGGGTTTTCCHHHHHHH
T ss_pred CCcH-HHHHHHHHHHhccccCCccccccCCCChhhHHHH
Confidence 7999 79999999999 8899999999999999875
No 11
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=99.59 E-value=1.9e-15 Score=129.59 Aligned_cols=102 Identities=16% Similarity=0.214 Sum_probs=81.4
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHH--HHH-HHHhcCCcccCC
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLK--DIE-YDIEHGKVELKV 101 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~--~l~-~~~~~g~~~~~~ 101 (137)
.+|+|||..+ .+..+ -.|..++++++.+.+||+.||.+.|+||++++..|.++++ ++. ..+..+ ...
T Consensus 6 ~~~~~ry~~~---~~~~~----~sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~~~~~~~~~~~~---~~~ 75 (451)
T 3c8t_A 6 PLYGRSFADD---KMREL----FSAQSFISRCVETEVALARAQARLGIIPEDAAAGITAAARTFAPEMERLRDD---TEI 75 (451)
T ss_dssp CCSSCCCSCH---HHHHH----TSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHCCCCHHHHHHH---HHH
T ss_pred CccccccCcH---HHHHH----cCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhcCCCHHHHHHH---hhc
Confidence 5899999973 34332 2378899999999999999999999999999999999985 221 111111 122
Q ss_pred CCchHHHHHHHHHHHHhCcccccccccccchhhcCC
Q psy16111 102 ELEDIHMNIESELIRRIGNVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 102 ~~EDih~~iE~~L~e~~G~~gg~lHtGRSRNDqvat 137 (137)
..+|| .++|+.|++++|+.|+++|+||||||++.|
T Consensus 76 ~~~dV-ia~~~~l~e~~g~~g~~vH~g~SsnDv~~T 110 (451)
T 3c8t_A 76 VGYPI-LPLVEQLSAHAGEAGKYLHWGATTQDIMDT 110 (451)
T ss_dssp HSSSH-HHHHHHHHHHHGGGGGGSSSSCCHHHHHHH
T ss_pred CCCcH-HHHHHHHHHHcccccccccCCCChhhHHHH
Confidence 57999 699999999999989999999999999875
No 12
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Probab=99.57 E-value=1.4e-15 Score=132.49 Aligned_cols=107 Identities=14% Similarity=0.187 Sum_probs=90.7
Q ss_pred hhhhccCCCchHHHHHHHhhCH-HHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC--
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESI-SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV-- 101 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~-~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~-- 101 (137)
++||+ .....+++|..|. .++..+++....+.+||+.|+.+.|+|+++++..|.++++++..+...+.|++++
T Consensus 48 ~~~G~----~t~r~~~~F~is~~~~~~~~I~a~~~vk~A~A~a~~~~Gil~~~~a~aI~~a~~ei~~~~~~~~f~~~~~q 123 (495)
T 4adm_A 48 ALWRA----QTQRAVENFPISGRGLERTQIRALGLLKGACAQVNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQ 123 (495)
T ss_dssp CSCCH----HHHHHHHHCCSSSCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCGGGCCCBSSS
T ss_pred hhcCc----hhHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCcccCCCCcchhh
Confidence 79996 6677899998554 2446667777777999999999999999999999999999998876667788766
Q ss_pred --CCchHHHHHHHHHHHHh--Ccccccccc------cccchhhcCC
Q psy16111 102 --ELEDIHMNIESELIRRI--GNVGRKLHT------GKTLKALLLP 137 (137)
Q Consensus 102 --~~EDih~~iE~~L~e~~--G~~gg~lHt------GRSRNDqvat 137 (137)
..+|+|+++|..|..+. | |+++|+ ||||||++.|
T Consensus 124 ~g~gt~~nmnvnevia~ra~lG--G~~vH~~dhVn~g~SsNDv~~T 167 (495)
T 4adm_A 124 TGSGTSSNMNTNEVIASIAAKG--GVTLHPNDDVNMSQSSNDTFPT 167 (495)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHT--TCCCCTTTTTTTTCCHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHhC--CCccCcccccCCCCChhhHHHH
Confidence 46999999999999954 8 888998 8999999875
No 13
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=99.54 E-value=1.5e-15 Score=130.70 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=85.9
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhc-CC-----CCHHHHHHHHHHHHHHHHH----Hhc
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGER-NI-----IDEQDKELIVKTLKDIEYD----IEH 94 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~-GI-----Is~~ea~~I~~aL~~l~~~----~~~ 94 (137)
.+|+|||.+++++....|. |+.++++++.+.+||+.||.+. || ||++++..|.++++++... +..
T Consensus 10 s~~~gRy~~~~~~~~~~fs-----d~~~i~~~~~ve~A~a~ala~~g~i~~ip~i~~~~a~~I~~~~~~i~~g~~~~~~~ 84 (462)
T 2ptr_A 10 SPVDGRYGDKVSALRGIFS-----EYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSEEDAARIKT 84 (462)
T ss_dssp STTTTTTGGGSGGGGGTTS-----HHHHHHHHHHHHHHHHHHHHHCTTCTTSCCCCHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CcccccccCchHHHHHHCC-----cHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhccCCHHHHHh
Confidence 4799999998777777776 8999999999999999999999 77 3599999999998766321 111
Q ss_pred CCcccCCCCchHHHHHHHHHHHHhCc------ccccccccccchhhcCC
Q psy16111 95 GKVELKVELEDIHMNIESELIRRIGN------VGRKLHTGKTLKALLLP 137 (137)
Q Consensus 95 g~~~~~~~~EDih~~iE~~L~e~~G~------~gg~lHtGRSRNDqvat 137 (137)
+ . ....+|| .++|+.|++++|+ +++++|+||||||++.|
T Consensus 85 ~--~-~~~~~dv-~av~~~l~e~~g~~g~~~~~~~~vH~g~SsnDv~~T 129 (462)
T 2ptr_A 85 I--E-RTTNHDV-KAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNL 129 (462)
T ss_dssp H--H-HHHSCHH-HHHHHHHHHHHTTSHHHHTTGGGTTTTCCHHHHHHH
T ss_pred h--c-cccCCCH-HHHHHHHHHHhccccCCcchhhhccCCCCHHHHHHH
Confidence 1 1 3457999 9999999999984 58999999999999865
No 14
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=99.48 E-value=1.4e-14 Score=122.88 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=75.7
Q ss_pred hhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHH---HHHHHHHHhcCCcccCCC
Q psy16111 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT---LKDIEYDIEHGKVELKVE 102 (137)
Q Consensus 26 lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~a---L~~l~~~~~~g~~~~~~~ 102 (137)
.|+|||.. +.+ ..+-.|..++++.+.+.+||+.||.+.|+||++++..|.++ ++.+... ....
T Consensus 5 p~~~ry~~---~~~----~~i~sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~d~~~~~~~-------~~~~ 70 (403)
T 1dof_A 5 PFDWRYGS---EEI----RRLFTNEAIINAYLEVERALVCALEELGVAERGCCEKVNKASVSADEVYRL-------ERET 70 (403)
T ss_dssp GGGTTSSC---HHH----HTTSSHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHCCCCTTTC--------------
T ss_pred CcccccCc---HHH----HHHcChHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHH-------hhcc
Confidence 48899997 233 34445899999999999999999999999999999999988 3333322 1225
Q ss_pred CchHHHHHHHHHHHHhCcccccccccccchhhcCC
Q psy16111 103 LEDIHMNIESELIRRIGNVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 103 ~EDih~~iE~~L~e~~G~~gg~lHtGRSRNDqvat 137 (137)
.+|| .++|+.|++++| |+++|+||||||++.|
T Consensus 71 ~~dV-ia~~~~l~e~~G--g~~vH~g~SsnD~~~T 102 (403)
T 1dof_A 71 GHDI-LSLVLLLEQKSG--CRYVHYGATSNDIIDT 102 (403)
T ss_dssp -CHH-HHHHHHHHHHHC--CSCTTTTCCHHHHHHH
T ss_pred CCcH-HHHHHHHHHHcC--CCcccCCCChhhHHHH
Confidence 7999 689999999999 8999999999999875
No 15
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=99.47 E-value=4.7e-14 Score=120.23 Aligned_cols=81 Identities=21% Similarity=0.174 Sum_probs=72.3
Q ss_pred HHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHH----HHHHHHHHhcCCcccCCCCchHHHHHHHHHHHHhCccccc
Q psy16111 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT----LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRK 124 (137)
Q Consensus 49 D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~a----L~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~~G~~gg~ 124 (137)
|..++++.+.+.+||+.||.+.|+||++++..|.++ +..+..... ...+|| .++|+.|++++|+.|++
T Consensus 15 d~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~d~~~i~~~~~-------~~~~dV-ia~~~~l~e~~g~~g~~ 86 (429)
T 1c3c_A 15 EEAKYRRWLEVELAVTRAYEELGMIPKGVTERIRNNAKIDVELFKKIEE-------KTNHDV-VAFVEGIGSMIGEDSRF 86 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHCCCCHHHHHHHHH-------HHCCHH-HHHHHHHHHHHGGGGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhCCCCHHHHHHHHh-------ccCCCh-HHHHHHHHHHcCccccc
Confidence 788999999999999999999999999999999999 577766422 147999 78999999999988999
Q ss_pred ccccccchhhcCC
Q psy16111 125 LHTGKTLKALLLP 137 (137)
Q Consensus 125 lHtGRSRNDqvat 137 (137)
+|+||||||++.|
T Consensus 87 vH~g~SsnD~~~T 99 (429)
T 1c3c_A 87 FHYGLTSSDVLDT 99 (429)
T ss_dssp TTTTCCHHHHHHH
T ss_pred ccCCCChhhHHHH
Confidence 9999999999875
No 16
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=99.45 E-value=6.2e-14 Score=120.12 Aligned_cols=86 Identities=15% Similarity=0.117 Sum_probs=74.6
Q ss_pred hCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHH----HHHHHHHHhcCCcccCCCCchHHHHHHHHHHHHh-
Q psy16111 44 ESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT----LKDIEYDIEHGKVELKVELEDIHMNIESELIRRI- 118 (137)
Q Consensus 44 ~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~a----L~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~~- 118 (137)
.++-.|..++++.+.+.+||+.||.+.|+||++++..|.++ +..+..... ...+|| .++|+.|++++
T Consensus 20 ~~i~sd~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~~~d~~~i~~~~~-------~~~~dV-ia~~~~l~e~~g 91 (444)
T 2pfm_A 20 GAIWTEENKFKAWLEVEILACEAWAELGDIPKEDVKKIREHASFDIDRIYEIEK-------ETRHDV-VAFTRAVSETPA 91 (444)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHCCCCHHHHHHHHH-------HHCCHH-HHHHHHHHTCTT
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhCCCCHHHHHHHhc-------cCCCCH-HHHHHHHHHHcC
Confidence 34555899999999999999999999999999999999999 566666422 257999 78999999999
Q ss_pred -CcccccccccccchhhcCC
Q psy16111 119 -GNVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 119 -G~~gg~lHtGRSRNDqvat 137 (137)
|+.|+++|+||||||++.|
T Consensus 92 ~g~~g~~vH~g~SsnDv~~T 111 (444)
T 2pfm_A 92 LGEERKWVHYGLTSTDVVDT 111 (444)
T ss_dssp CCGGGGGTTTTCCHHHHHHH
T ss_pred CCcccccccCCCChhhHHHH
Confidence 7889999999999999875
No 17
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=99.38 E-value=3.1e-13 Score=115.73 Aligned_cols=82 Identities=12% Similarity=0.041 Sum_probs=70.4
Q ss_pred HHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHH-------HHHHHHhcCCcccCCCCchHHHHHHHHHHHHhC-
Q psy16111 48 VDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLK-------DIEYDIEHGKVELKVELEDIHMNIESELIRRIG- 119 (137)
Q Consensus 48 ~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~-------~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~~G- 119 (137)
.|..++++.+.+.+||+.||.+.|+||++++..|.++++ .+.... ....+||| ++|+.|++++|
T Consensus 20 s~~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~~~~~f~~~~~~~~~-------~~~~~dV~-a~~~~l~e~~g~ 91 (450)
T 1re5_A 20 SDRGRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQAERYDTGALANAI-------ATAGNSAI-PLVKALGKVIAT 91 (450)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHCCGGGSCHHHHHHHH-------HHHSSSHH-HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhcCCCCHHHHHHHH-------hccCccHH-HHHHHHHHHhCC
Confidence 478899999999999999999999999999999999974 333221 12479998 88999999999
Q ss_pred --cc-cccccccccchhhcCC
Q psy16111 120 --NV-GRKLHTGKTLKALLLP 137 (137)
Q Consensus 120 --~~-gg~lHtGRSRNDqvat 137 (137)
+. ++++|+||||||++.|
T Consensus 92 ~~~~~~~~vh~g~SsnD~~~T 112 (450)
T 1re5_A 92 GVPEAERYVHLGATSQDAMDT 112 (450)
T ss_dssp HCGGGGGGTTTTCCHHHHHHH
T ss_pred CCCcccccccCCCChhhhHHH
Confidence 76 9999999999999875
No 18
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=99.37 E-value=5e-13 Score=115.57 Aligned_cols=101 Identities=12% Similarity=0.108 Sum_probs=83.1
Q ss_pred HHHHHHh-hCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCC----CchHHHHHH
Q psy16111 37 EFLQQFN-ESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVE----LEDIHMNIE 111 (137)
Q Consensus 37 ~~~~~f~-~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~----~EDih~~iE 111 (137)
-.+++|- +...++..++++.+.+.+||+.++.+.|+|+++++..|.++++++......+.|++++- .+|+|++++
T Consensus 29 ra~~nf~i~~~~~~~~~i~a~~~vk~A~A~a~~~~Gil~~~~a~aI~~a~~~i~~~~~~~~f~~~~~~~g~gt~~nmnvn 108 (468)
T 3r6q_A 29 RATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNAN 108 (468)
T ss_dssp HHHHHCCSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTGGGCCSCSSCSSTTHHHHHHHH
T ss_pred HHHHccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCccccCCCccHHhccccccccccHH
Confidence 3577773 44556789999999999999999999999999999999999999987655677887764 458888876
Q ss_pred ----HHHHHHhCcc-ccc--ccc------cccchhhcCC
Q psy16111 112 ----SELIRRIGNV-GRK--LHT------GKTLKALLLP 137 (137)
Q Consensus 112 ----~~L~e~~G~~-gg~--lHt------GRSRNDqvat 137 (137)
+++++++|+. |++ +|+ ||||||++.|
T Consensus 109 evia~~~~e~~G~~~g~y~~vHpndhVn~g~SsnDv~~T 147 (468)
T 3r6q_A 109 EVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPT 147 (468)
T ss_dssp HHHHHHHHHHTTCCTTCTTTSCCCCCCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHhccccCCcCccCCccCCCCCCChHhHHHH
Confidence 5778889965 443 996 9999999875
No 19
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=99.33 E-value=2.1e-13 Score=114.20 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=77.6
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCc
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~E 104 (137)
.+|++||..+ .+..+. -+..++.+...+-+||+.||.+.|+||++++.+|.++++++..++..-. ......+
T Consensus 9 ~l~~~~~~~~---~m~~~f----s~~~~i~~~~~ve~A~a~a~~~~G~i~~~~a~~I~~~~~~i~~~~~~~~-~~~~~~~ 80 (359)
T 2fel_A 9 PFLSGLFGDS---EIIELF----SAKADIDAMIRFETALAQAEAEASIFADDEAEAIVSGLSEFAADMSALR-HGVAKDG 80 (359)
T ss_dssp TTTHHHHCCH---HHHGGG----SHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCCCHHHHH-HHHHHHS
T ss_pred cccccccCCH---HHHHHc----CcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhccccHHHHH-hhccccC
Confidence 5788777754 233222 2566677888888999999999999999999999999976532111000 0112346
Q ss_pred hHHHHHHHHHHHHhC-cccccccccccchhhcCC
Q psy16111 105 DIHMNIESELIRRIG-NVGRKLHTGKTLKALLLP 137 (137)
Q Consensus 105 Dih~~iE~~L~e~~G-~~gg~lHtGRSRNDqvat 137 (137)
+.+.++++.|++.+| +.++++|+||||||++.|
T Consensus 81 ~~~~~~~~~l~~~~g~~~~~~vH~G~SsnDv~~T 114 (359)
T 2fel_A 81 VVVPELIRQMRAAVAGQAADKVHFGATSQDVIDT 114 (359)
T ss_dssp SSHHHHHHHHHTTSCGGGGGGTTTTCCHHHHHHH
T ss_pred CcHHHHHHHHHHHcCccccchhcCCCCHhhHHHH
Confidence 678899999999998 589999999999999865
No 20
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=99.28 E-value=2.2e-12 Score=110.52 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=65.6
Q ss_pred HHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHH----HHHHHHHhcCCcccCCCCchHHHHHHHHHHHHhCcc-cc
Q psy16111 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL----KDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNV-GR 123 (137)
Q Consensus 49 D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL----~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~~G~~-gg 123 (137)
|...|+..+.+..||+.++.+ ||||++.+..|.+++ ..+... . .....||| ++|++|++++|+. |+
T Consensus 16 ~~~~~~~~l~ve~Ala~a~~~-GlIp~~~~~~i~~~~~~d~~~i~~~-e------~~~~hdV~-a~~~~l~e~~g~~~~~ 86 (438)
T 4eei_A 16 DENKYAKMLEVELAILEALED-RMVPKGTAAEIRARAQIRPERVDEI-E------KVTKHDII-AFCTSIAEQFTAETGK 86 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG-TTSCTTHHHHHHHHCCCCHHHHHHH-H------HHHSCHHH-HHHHHHHTTSCTTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHhhCCCCHHHHHHH-H------HhcCCCHH-HHHHHHHHHcCHHhhc
Confidence 556788889999999999999 999999999998873 222221 1 12357996 8999999999986 99
Q ss_pred cccccccchhhcCC
Q psy16111 124 KLHTGKTLKALLLP 137 (137)
Q Consensus 124 ~lHtGRSRNDqvat 137 (137)
++|+||||||++.|
T Consensus 87 ~iH~G~SsnDv~~T 100 (438)
T 4eei_A 87 FFHFGVTSSDIIDS 100 (438)
T ss_dssp TTTCSCCHHHHHHH
T ss_pred ccCCCCCHHHHHHH
Confidence 99999999999865
No 21
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=99.27 E-value=9.3e-13 Score=113.65 Aligned_cols=102 Identities=7% Similarity=-0.038 Sum_probs=77.9
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHhcCCcccCCC
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNI--IDEQDKELIVKTLKDIEYDIEHGKVELKVE 102 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GI--Is~~ea~~I~~aL~~l~~~~~~g~~~~~~~ 102 (137)
..|.|||..+ +.+..+.+ |...+...+.+.+||+.++.+.|| ||++++..|.+++.++..+..++. ....
T Consensus 9 spl~~ry~~~--~~m~~~fs----~~~~~~~~~~~e~Ala~a~~~~Gl~~i~~~~~~~I~~~l~~i~~~~~~~~--e~~~ 80 (478)
T 1yis_A 9 SVLSTRYCKN--SPLVSILS----ETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFDWPFIRSE--ERKL 80 (478)
T ss_dssp CHHHHTTTTT--CTHHHHTS----HHHHHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHTTTCCCHHHHHHH--HHHS
T ss_pred CCcccccCCh--HHHHHHcC----chHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCHHHHhhH--HHhc
Confidence 3678899864 21333322 233577888899999999999999 999999999999877755533221 1466
Q ss_pred CchHHHHHHHHHHHHhCcccccccccccchhhc
Q psy16111 103 LEDIHMNIESELIRRIGNVGRKLHTGKTLKALL 135 (137)
Q Consensus 103 ~EDih~~iE~~L~e~~G~~gg~lHtGRSRNDqv 135 (137)
.+|||.++|. |++++|++|+++|+|||+||.+
T Consensus 81 ~~DV~a~v~~-l~e~~g~~~~~iH~G~TS~Di~ 112 (478)
T 1yis_A 81 KHDVMAHNHA-FGKLCPTAAGIIHLGATSCFVQ 112 (478)
T ss_dssp SCHHHHHHHH-HHHHCTTTGGGTTTTCCHHHHH
T ss_pred CCcHHHHHHH-HHHhhhhchhheeCCCchhhhH
Confidence 8999999996 8999999999999999555543
No 22
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=99.27 E-value=5.9e-12 Score=109.23 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=81.1
Q ss_pred HHHHHhhC-HHH--HHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC----CCchHHHHH
Q psy16111 38 FLQQFNES-ISV--DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV----ELEDIHMNI 110 (137)
Q Consensus 38 ~~~~f~~s-~~~--D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~----~~EDih~~i 110 (137)
.+++|-.+ ..+ ...++++...+.+||+.++.+.|+|+++.+..|.+++++|......+.|++++ ..+|+|+++
T Consensus 48 a~~nf~i~~~~~~~~~~~i~a~~~vk~A~A~an~~~G~l~~~~a~aI~~a~~ei~~g~~~~~f~~~~~q~g~gt~~nmnv 127 (478)
T 3ocf_A 48 AVENFSLSDVALNHIPALVRALAMVKKAAATANYKLRQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNA 127 (478)
T ss_dssp HHHHCCCSSCBGGGSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTTTGGGCCCBTTCSSTTHHHHHHH
T ss_pred HHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCccccCCCcchhhccCCccccchH
Confidence 57777322 222 26889999999999999999999999999999999999998754556677665 467999887
Q ss_pred H----HHHHHHhCc-cccc--cc------ccccchhhcCC
Q psy16111 111 E----SELIRRIGN-VGRK--LH------TGKTLKALLLP 137 (137)
Q Consensus 111 E----~~L~e~~G~-~gg~--lH------tGRSRNDqvat 137 (137)
+ +++++.+|+ .|++ +| +||||||++.|
T Consensus 128 nevia~~a~e~~G~~~G~~~~vHpndhVn~g~SsNDv~~T 167 (478)
T 3ocf_A 128 NEVIANRALEHLGRPRGDYQTIHPNDDVNMSQSTNDVYPT 167 (478)
T ss_dssp HHHHHHHHHHHTTCCTTCTTTSCCCCCCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhchhcCCCCccCCCCCCCCCCChhhHHHH
Confidence 6 577888994 7777 99 99999999865
No 23
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=99.13 E-value=9.4e-12 Score=108.25 Aligned_cols=101 Identities=10% Similarity=0.039 Sum_probs=77.3
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Q psy16111 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNI-IDEQDKELIVKTLKDIEYDIEHGKVELKVEL 103 (137)
Q Consensus 25 ~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GI-Is~~ea~~I~~aL~~l~~~~~~g~~~~~~~~ 103 (137)
..+.+||..+ .+..+.+ |...+...+.+.+||+.++.+.|| ||++++..|.+++.++..+..++ + .....
T Consensus 37 spl~~ry~~~---~m~~~fS----~~~~~~~~~~~e~Ala~a~~~~Gl~i~~e~~~~I~~~l~~i~~~~~~~-~-e~~~~ 107 (503)
T 2j91_A 37 SPLASRYASP---EMCFVFS----DRYKFRTWRQLWLWLAEAEQTLGLPITDEQIREMKSNLENIDFKMAAE-E-EKRLR 107 (503)
T ss_dssp CHHHHTTSCH---HHHHHTS----HHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTSSCCCHHHHHH-H-HHHHS
T ss_pred CCcccccCCH---HHHHHhC----hhHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCHHHHhh-h-hhhcC
Confidence 3577898863 4444332 334677888999999999999999 99999999999887665443222 1 13567
Q ss_pred chHHHHHHHHHHHHhCcccccccccccchhhc
Q psy16111 104 EDIHMNIESELIRRIGNVGRKLHTGKTLKALL 135 (137)
Q Consensus 104 EDih~~iE~~L~e~~G~~gg~lHtGRSRNDqv 135 (137)
+|||.++|. |++++|++|+++|+|||+||.+
T Consensus 108 hDV~a~v~~-l~e~~g~~~~~iH~G~TS~Di~ 138 (503)
T 2j91_A 108 HDVMAHVHT-FGHCCPKAAGIIHLGATSCYVG 138 (503)
T ss_dssp CHHHHHHHH-HHHHCTTTGGGTTTTCCTHHHH
T ss_pred CcHHHHHHH-HHHHhccccccccCCCCHhhHH
Confidence 999999995 8999999999999999555543
No 24
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}
Probab=99.07 E-value=1.5e-10 Score=100.85 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=80.1
Q ss_pred HHHHHhhCH---HHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC----CCchHHH--
Q psy16111 38 FLQQFNESI---SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV----ELEDIHM-- 108 (137)
Q Consensus 38 ~~~~f~~s~---~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~----~~EDih~-- 108 (137)
.+++|-.+- .+...+.+....+.+|++.++.+.| |+++.+..|++++++|......+.|+.+. .-+++++
T Consensus 55 a~~nf~i~~~~~~~~~~~i~a~~~vkkAaA~an~~~G-l~~~~a~aI~~a~~ev~~g~~~~~Fp~~~~q~Gsgt~~nmn~ 133 (490)
T 3e04_A 55 STMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDYG-LDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNV 133 (490)
T ss_dssp HHHHCCCSCGGGBCCHHHHHHHHHHHHHHHHHGGGGT-CCHHHHHHHHHHHHHHHTTSCGGGCCCBSSSCTTCHHHHHHH
T ss_pred HHHcccccCCCCCCCHHHHHHHHHHHHHHHHHhhhcC-CCHHHHHHHHHHHHHHHcCCcccCCceeeecCCCCCcccccH
Confidence 577775332 3457899999999999999999999 99999999999999998754455676543 2455555
Q ss_pred --HHHHHHHHHhC-cccccc--cc------cccchhhcCC
Q psy16111 109 --NIESELIRRIG-NVGRKL--HT------GKTLKALLLP 137 (137)
Q Consensus 109 --~iE~~L~e~~G-~~gg~l--Ht------GRSRNDqvat 137 (137)
.||+++++++| +.|+++ |+ ||||||++.|
T Consensus 134 NEvia~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~T 173 (490)
T 3e04_A 134 NEVISNRAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPT 173 (490)
T ss_dssp HHHHHHHHHHHTTCCTTSCCSSCCCCCCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCCCCCCcccccCCCCChhhHHHH
Confidence 69999999999 688874 87 9999999875
No 25
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}
Probab=99.03 E-value=3.2e-10 Score=98.53 Aligned_cols=100 Identities=16% Similarity=0.088 Sum_probs=80.9
Q ss_pred HHHHHh-hCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCc--------hHHH
Q psy16111 38 FLQQFN-ESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE--------DIHM 108 (137)
Q Consensus 38 ~~~~f~-~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~E--------Dih~ 108 (137)
.+.+|- +...++..+++....+-+|++.++.+.|+|+++.+..|+++.+++....-.+.|++++-.. .++.
T Consensus 50 a~~nf~i~~~~~~~~~i~a~~~vk~AaA~an~~~G~l~~~~a~aI~~a~~ev~~g~~~~~fp~~~~q~gsGt~~Nmn~Ne 129 (482)
T 3gtd_A 50 SLNNFKISKQKMPKILIRALAILKKCAAQVNYEFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNE 129 (482)
T ss_dssp HHHHCCCCSCBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTTTTTSCCCBSSSCTTCHHHHHHHHH
T ss_pred HHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCcccCCCeehhccCCCccccchHHH
Confidence 466663 3334578999999999999999999999999999999999999988753346676655322 4777
Q ss_pred HHHHHHHHHhC-cccccc--cc------cccchhhcCC
Q psy16111 109 NIESELIRRIG-NVGRKL--HT------GKTLKALLLP 137 (137)
Q Consensus 109 ~iE~~L~e~~G-~~gg~l--Ht------GRSRNDqvat 137 (137)
.||+++++++| +.|++. |+ ||||||++.|
T Consensus 130 vIa~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~T 167 (482)
T 3gtd_A 130 VIASIANEELTGKKGGKFPVHPNDHVNKGQSSNDSFPT 167 (482)
T ss_dssp HHHHHHHHHHHSCCCSSSSSCCCCCCTTTCCHHHHHHH
T ss_pred HHHHHHHHHhCcccCCcCcCCccccCCCCCChhhHHHH
Confidence 79999999999 678764 76 9999999865
No 26
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=97.91 E-value=2.1e-05 Score=68.41 Aligned_cols=100 Identities=13% Similarity=0.043 Sum_probs=74.7
Q ss_pred HHHHHh-hCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCc--------hHHH
Q psy16111 38 FLQQFN-ESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE--------DIHM 108 (137)
Q Consensus 38 ~~~~f~-~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~E--------Dih~ 108 (137)
.+++|- +...+...+.+....+-+|-+....+.|+|+++.+..|.++.++|....-.+.|+.+.-.. -+..
T Consensus 61 a~~nf~i~~~~~~~~~i~a~~~vk~AaA~an~~lG~l~~~~a~aI~~A~~ei~~g~~~~~F~~d~~q~gsgt~~nmn~ne 140 (495)
T 4hgv_A 61 SLGNFKIGWEKQPLAIVRALGIVKQAAARANMALGRLDPAIGDAIVKAAQEVIDGKLDEHFPLVVWQTGSGTQSNMNANE 140 (495)
T ss_dssp HHHHCCCCSCBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSSGGGCCCBSSSCTTCHHHHHHHHH
T ss_pred HHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCchhhccchhhhhhccccccCcchhH
Confidence 477774 3334557788999999999999999999999999999999999997643344565544221 2445
Q ss_pred HHHHHHHHHhCc-cc--------ccccccccchhhcCC
Q psy16111 109 NIESELIRRIGN-VG--------RKLHTGKTLKALLLP 137 (137)
Q Consensus 109 ~iE~~L~e~~G~-~g--------g~lHtGRSRNDqvat 137 (137)
.|-++..+.+|. .| ..+|.|+||||++.|
T Consensus 141 vian~a~e~lg~~~g~~~~vhpnd~Vh~gqSsnDv~~T 178 (495)
T 4hgv_A 141 VVSNRAIELLGGVMGSKKPVHPNDHVNMSQSSNDTYPT 178 (495)
T ss_dssp HHHHHHHHHTTCCTTTTCSCCCCCCCTTTCCHHHHHHH
T ss_pred HHHHHHHHHcCcccCCCCCCCHHHhccCCCChhhHHHH
Confidence 567777788884 33 349999999999865
No 27
>2odm_A YLAN, UPF0358 protein MW0995; triple helix, unknown function; 2.24A {Staphylococcus aureus subsp}
Probab=69.97 E-value=9.1 Score=26.09 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=30.8
Q ss_pred HHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy16111 47 SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEY 90 (137)
Q Consensus 47 ~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~ 90 (137)
.+|..+|...-.++.| .+.|+|+.++++.|+..|++=..
T Consensus 44 VlDTQmfGlSrEIdFA-----vrlGli~~~~Gk~ll~~LE~~Ls 82 (91)
T 2odm_A 44 VLDTQMFGLQKEVDFA-----VKLGLVDREDGKQIMLRLEKELS 82 (91)
T ss_dssp HHHHHHHHHHHHHHHH-----HHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHH-----HHHCCccHHHHHHHHHHHHHHHH
Confidence 3567777777777766 68899999999999999887444
No 28
>2gbo_A UPF0358 protein EF2458; structural genomics, hypothetical protein, PSI, protein STRU initiative, midwest center for structural genomics; 2.20A {Enterococcus faecalis} SCOP: a.23.6.1
Probab=64.76 E-value=11 Score=26.29 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=29.2
Q ss_pred HHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy16111 48 VDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIE 89 (137)
Q Consensus 48 ~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~ 89 (137)
+|..||-..-.++.| .+.|+|+.++++.|+..|.+=.
T Consensus 47 lDTQmyGlSrEIdFA-----VrlGli~~~~Gk~ll~~LE~~L 83 (104)
T 2gbo_A 47 VDTQMYGFSRQVTYA-----TRLGILTNDEGHRLLSDLEREL 83 (104)
T ss_dssp HHHHHHHHHHHHHHH-----HHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhchHHHHHHH-----HHHcCccHHHHHHHHHHHHHHH
Confidence 467777777666666 5789999999999999887643
No 29
>3exm_A Phosphatase SC4828; nucleoside diphosphatase, GDP/UDP'ASE, non-HYD GDP analogue, lipocalcin fold, metalloprotein, hydrolase; HET: GP2; 1.65A {Streptomyces coelicolor A3} PDB: 3cbt_A* 3bxt_A
Probab=55.43 E-value=12 Score=29.46 Aligned_cols=38 Identities=8% Similarity=0.017 Sum_probs=33.8
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCch
Q psy16111 68 GERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELED 105 (137)
Q Consensus 68 ~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~ED 105 (137)
.+.|.++++.+..+.++++.|...+..++++++..+++
T Consensus 175 ~~~g~y~~e~~~~a~~~~~~L~~~I~~~~~PF~~~~~~ 212 (237)
T 3exm_A 175 LRDGLMDPASAGRVRRAGRSAVAEIRAWGSPFADGWEH 212 (237)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHTCTTGGGTGGG
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCccc
Confidence 36899999999999999999999999999988877655
No 30
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=34.67 E-value=64 Score=21.66 Aligned_cols=74 Identities=18% Similarity=0.281 Sum_probs=52.7
Q ss_pred CchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCchHHHHHHH
Q psy16111 33 QSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIES 112 (137)
Q Consensus 33 ~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~EDih~~iE~ 112 (137)
..|.+.+.+.+....-+-..|+.-|.-.--|+..+...--+|+.+-...++.+-+..-. +.....-+|..|+.
T Consensus 4 ~~P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~Fia-------LAa~l~~lH~~V~~ 76 (93)
T 3t98_B 4 MAPADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVA-------LAAQLQSIHENVKV 76 (93)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 35777888888877777888888899999999999887788886555554444433322 23445788888876
Q ss_pred H
Q psy16111 113 E 113 (137)
Q Consensus 113 ~ 113 (137)
.
T Consensus 77 ~ 77 (93)
T 3t98_B 77 L 77 (93)
T ss_dssp H
T ss_pred H
Confidence 5
No 31
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=26.28 E-value=65 Score=19.99 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy16111 72 IIDEQDKELIVKTLKDIEYD 91 (137)
Q Consensus 72 IIs~~ea~~I~~aL~~l~~~ 91 (137)
-+|++.+..|+++|+.....
T Consensus 4 ~lt~eq~~aILkaLdeaIe~ 23 (57)
T 3fxd_A 4 QLSDEQKETILKALNDAIEK 23 (57)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHc
Confidence 47899999999999987665
No 32
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=22.78 E-value=1.7e+02 Score=19.29 Aligned_cols=49 Identities=10% Similarity=-0.030 Sum_probs=35.2
Q ss_pred hcHHHHHHHHhcCCCCHHHHHHH--HHHHHHHHHHHhcCCcccCCCCchHHHHHHHHH
Q psy16111 59 GSIAHVTMLGERNIIDEQDKELI--VKTLKDIEYDIEHGKVELKVELEDIHMNIESEL 114 (137)
Q Consensus 59 ~~~AH~~mL~~~GIIs~~ea~~I--~~aL~~l~~~~~~g~~~~~~~~EDih~~iE~~L 114 (137)
+..+...+|.+.||-|.++.+.+ ..+..++... ..++.. ++..++|..+
T Consensus 12 iG~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL~~~------~~~~c~-~~L~aL~gAi 62 (93)
T 3bqs_A 12 IGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWEN------DSSVCM-SELYALEGAV 62 (93)
T ss_dssp CCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHTT------CTTCCH-HHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHH------CCCCCH-HHHHHHHHHH
Confidence 45788999999999999998875 3334444432 235665 8888888776
No 33
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=22.52 E-value=87 Score=19.08 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=23.7
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHh
Q psy16111 67 LGERNIIDEQDKELIVKTLKDIEYDIE 93 (137)
Q Consensus 67 L~~~GIIs~~ea~~I~~aL~~l~~~~~ 93 (137)
|.+-||-+.....+|+.++..+.....
T Consensus 46 L~~lGI~~~g~r~kil~~i~~L~~~~e 72 (74)
T 2gle_A 46 LKALGMTSSQDRALVKKKLKEMKMSLE 72 (74)
T ss_dssp HHTTTCCCHHHHHHHHHHHHSHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 788999999999999999999887643
No 34
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=22.34 E-value=1.4e+02 Score=22.20 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=38.4
Q ss_pred HHHHHhcCCCCH-HHHHHHHHHHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHH
Q psy16111 64 VTMLGERNIIDE-QDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRR 117 (137)
Q Consensus 64 ~~mL~~~GIIs~-~ea~~I~~aL~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~ 117 (137)
+..|.+.|++.- +++..++..|.++..+ ....-++.+=++|.|.-++.++.+.
T Consensus 39 A~~L~e~g~vei~d~~~~~I~eL~~il~e-Er~~~~L~~LP~dFY~rvr~yI~~L 92 (171)
T 3anw_B 39 ARELWEAGVVEIVDETDKIIGEIDKVIAE-ERESEPLTLLPEGLYERAEFYAYYL 92 (171)
T ss_dssp HHHHHHTTSEEECCTHHHHHHHHHHHHHH-HTTSSSCCCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHCCCEeeccccchHHHHHHHHHHH-hhccCccccCCHHHHHHHHHHHHHH
Confidence 568999999883 4467777788887654 3333456777899999999887654
No 35
>3eq5_A SKI-like protein; TGF-beta, SIG protein, structural genomics, SGC stockholm, structural GEN consortium, SGC; 2.45A {Homo sapiens}
Probab=21.81 E-value=26 Score=25.12 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=23.6
Q ss_pred hhhcHHHHHHHHhcC----------CCCHHHHHHHHHHHH
Q psy16111 57 IAGSIAHVTMLGERN----------IIDEQDKELIVKTLK 86 (137)
Q Consensus 57 i~~~~AH~~mL~~~G----------IIs~~ea~~I~~aL~ 86 (137)
...+..-+..|...| +||+.+|+++.++|.
T Consensus 82 ~~Ct~eQL~~Lk~~GaiP~~a~~CgLITk~DaErLc~~ll 121 (125)
T 3eq5_A 82 SRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALL 121 (125)
T ss_dssp EECCHHHHHHHHHTTSSCTTCCCCEEEEHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHcCCCCCCCccccceeHHHHHHHHHHhc
Confidence 567778888887765 566899999999875
Done!