RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16111
(137 letters)
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 459
Score = 116 bits (292), Expect = 2e-32
Identities = 32/105 (30%), Positives = 54/105 (51%)
Query: 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85
LW G F +++ +++FN SI+ D L+ D+ GS A+ L + ++ + + + I+ L
Sbjct: 3 LWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQILHGL 62
Query: 86 KDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
+ + G +L EDIH E L IG KLHTG++
Sbjct: 63 DKVAEEWAQGTFKLNSNDEDIHTANERRLKELIGATAGKLHTGRS 107
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Escherichia coli [TaxId: 562]}
Length = 455
Score = 115 bits (288), Expect = 7e-32
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85
LW G F Q+ ++ +QFN+S+ D L +DI GS+A L ++ +++ + + L
Sbjct: 1 LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEAL 60
Query: 86 KDIEYDIEHGKVE-LKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
+ D+ + L+ + EDIH +E +LI ++G +G+KLHTG++
Sbjct: 61 NVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKKLHTGRS 106
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Domestic duck (Anas platyrhynchos), delta-crystallin
[TaxId: 8839]}
Length = 449
Score = 113 bits (282), Expect = 3e-31
Identities = 31/95 (32%), Positives = 51/95 (53%)
Query: 36 NEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHG 95
+ +++ N SI+ D+ L DI GS+A+ L + I+ + + E I+ L+ I + G
Sbjct: 2 DPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKG 61
Query: 96 KVELKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
+K EDIH E L IG++ KLHTG++
Sbjct: 62 VFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRS 96
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 50.5 bits (119), Expect = 8e-09
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE-DIH 107
D L + +A + +I + +I + K I+ + L +I
Sbjct: 18 DRALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAIDKIDFDALATATGLAGNIA 77
Query: 108 MNIESELIRRI----GNVGRKLHTGKT 130
+ +L + + R +H G T
Sbjct: 78 IPFVKQLTAIVKDADEDAARYVHWGAT 104
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 43.1 bits (100), Expect = 3e-06
Identities = 9/85 (10%), Positives = 19/85 (22%), Gaps = 3/85 (3%)
Query: 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIH- 107
D + + A ++ I + YD +
Sbjct: 19 DRGRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQAERYDTGALANAIATAGNSAIP 78
Query: 108 --MNIESELIRRIGNVGRKLHTGKT 130
+ + + R +H G T
Sbjct: 79 LVKALGKVIATGVPEAERYVHLGAT 103
>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
[Bacillus sp. NRRL B-14911] gi|89084274|gb|EAR63432.1|
adenylosuccinate lyase [Bacillus sp. NRRL B-14911] E=0
s/c=1.85 id=87% cov=100%
Length = 408
Score = 39.1 bits (90), Expect = 7e-05
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 8/84 (9%)
Query: 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIH- 107
+E ++ + I E I ++D + I + I ++E E H
Sbjct: 8 EENRFKAWLEVEILACEAWAELGDIPKEDVQKIRENASFDIERI------NEIEQETRHD 61
Query: 108 -MNIESELIRRIGNVGRKLHTGKT 130
+ + +G + +H G T
Sbjct: 62 VVAFTRAVSETLGEERKWVHYGLT 85
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp.,
ym55-1 [TaxId: 1409]}
Length = 462
Score = 34.5 bits (78), Expect = 0.002
Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 14/88 (15%)
Query: 56 DIAGSIAHVTML--------------GERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV 101
I G H ++ E ++D++ + IVK ++ + + +
Sbjct: 31 PITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDP 90
Query: 102 ELEDIHMNIESELIRRIGNVGRKLHTGK 129
+I I N +L +
Sbjct: 91 IQGGAGTSINMNANEVIANRALELMGEE 118
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Length = 456
Score = 33.2 bits (75), Expect = 0.006
Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 21/113 (18%)
Query: 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTML---------GERNIIDEQ 76
LW Q+S+ F IS E + S+ H L + ++ E+
Sbjct: 18 LWGAQTQRSLEHF------RIS------TEKMPTSLIHALALTKRAAAKVNEDLGLLSEE 65
Query: 77 DKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGK 129
I + ++ + L + + + N +L G
Sbjct: 66 KASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGV 118
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 31.4 bits (70), Expect = 0.030
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 61 IAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGN 120
+A E +I + E I K D+E K + D+ +E + IG
Sbjct: 27 LAVTRAYEELGMIPKGVTERIRNNAK---IDVELFKKIEEKTNHDVVAFVE-GIGSMIGE 82
Query: 121 VGRKLHTGKT 130
R H G T
Sbjct: 83 DSRFFHYGLT 92
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 459
Score = 28.2 bits (62), Expect = 0.33
Identities = 11/73 (15%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Query: 57 IAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIR 116
+ S A V +D + + I + ++ L V
Sbjct: 51 LKKSAAIVNE--SLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANE 108
Query: 117 RIGNVGRKLHTGK 129
I N ++ GK
Sbjct: 109 VISNRAIEILGGK 121
>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 249
Score = 27.5 bits (59), Expect = 0.47
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 49 DEVLYREDIAGSIAHVTM-LGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIH 107
VL D +A + N + + +V +L+ +E D V L + +
Sbjct: 2 QRVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVF 61
Query: 108 MN 109
Sbjct: 62 SA 63
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli
[TaxId: 562]}
Length = 459
Score = 26.0 bits (56), Expect = 2.1
Identities = 6/59 (10%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 72 IIDEQDKELIVKTLKDIEYDIEH-GKVELKVELEDIHMNIESELIRRIGNVGRKLHTGK 129
I + I+ ++ + + + + V ++ + N+G +L +
Sbjct: 67 TIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQ 125
>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 297
Score = 25.5 bits (54), Expect = 2.6
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 50 EVLYREDIAGSIAHVTM--LGERNIIDEQDKELIVKTLKDIEYDIEHGKVEL 99
++ Y + + V RN + + + L + G V L
Sbjct: 19 DITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLL 70
>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 95
Score = 24.0 bits (52), Expect = 4.2
Identities = 17/106 (16%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Query: 19 KPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDK 78
+P++++++ + + + ++ E I + + L ED+ + I+E K
Sbjct: 3 RPEDIREMMLLALKGNFLKAREKLRE-ILLKQGLSGEDVLVQMHKEVF---NLPIEEPKK 58
Query: 79 ELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRK 124
L+ + + + + G E ++LE L+ + +G+K
Sbjct: 59 VLLADKIGEYNFRLVEGANE-IIQLEA--------LLAQFTLIGKK 95
>d1h05a_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 144
Score = 23.7 bits (51), Expect = 8.1
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 83 KTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
T ++ IE EL ++ + E++L+ I
Sbjct: 25 TTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWI 60
>d2f0xa1 d.38.1.5 (A:3-138) Hypothetical protein Them2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 136
Score = 23.4 bits (50), Expect = 9.4
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 83 KTLKDIEY-DIEHGKVELKVELEDIHMN 109
+ L I GKV ++++E+ H N
Sbjct: 21 RVLGKITLVSAAPGKVICEMKVEEEHTN 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.136 0.378
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 516,793
Number of extensions: 23906
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 31
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (22.5 bits)