BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16114
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q63HK3|ZKSC2_HUMAN Zinc finger protein with KRAB and SCAN domains 2 OS=Homo sapiens
GN=ZKSCAN2 PE=1 SV=2
Length = 967
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 141 HGFIFTKTDPPNCP-CGEHLSVRHILTCHRHAQIRAS-LPHPPSL 183
H I T P C CG+ S +LT HR +R LPHPPSL
Sbjct: 905 HRRIHTGEKPYGCAQCGKRFSKSSVLTKHREVHVREKPLPHPPSL 949
>sp|P41003|SMC2_SCHPO Structural maintenance of chromosomes protein 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cut14 PE=1 SV=2
Length = 1172
Score = 35.0 bits (79), Expect = 0.35, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 78 DDFKPLAASLVRKEWQDQWNLVP------VTNKLKSIKPL--ITNWDTSNQENRTKEITL 129
D FK A V W DQ+N + +N L +I + ITN T +N +++
Sbjct: 9 DGFKSYAVRTVISNWDDQFNAITGLNGSGKSNILDAICFVLGITNMSTVRAQN-LQDLIY 67
Query: 130 TRMRIGHTRLTHGFIFTKTDPPNCPCG 156
R + G TR + +F DP + P G
Sbjct: 68 KRGQAGITRASVTIVFNNRDPASSPIG 94
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 19/60 (31%)
Query: 24 LVSKAYSCWDLLTSN-------------------NKDVRFMWCPSHCGIRGNEDVDQAAR 64
+V+ +Y CW +T + V F W P H GI GN+ D+AA+
Sbjct: 676 IVTDSYYCWKNITEGLGLEGPQNPWWPIIQNIREKEIVYFAWVPGHKGIYGNQLADEAAK 735
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=pol PE=1 SV=1
Length = 1146
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 19/60 (31%)
Query: 24 LVSKAYSCWDLLTSN-------------------NKDVRFMWCPSHCGIRGNEDVDQAAR 64
+V+ +Y CW +T + V F W P H GI GN+ D+AA+
Sbjct: 677 IVTDSYYCWKNITEGLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLADEAAK 736
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=pol PE=1 SV=1
Length = 1146
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 19/60 (31%)
Query: 24 LVSKAYSCWDLLTSN-------------------NKDVRFMWCPSHCGIRGNEDVDQAAR 64
+V+ +Y CW +T + V F W P H GI GN+ D+AA+
Sbjct: 677 IVTDSYYCWKNITEGLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLADEAAK 736
>sp|P19560|POL_BIV29 Gag-Pol polyprotein OS=Bovine immunodeficiency virus (strain R29)
GN=gag-pol PE=1 SV=2
Length = 1475
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 42 VRFMWCPSHCGIRGNEDVDQAARNPTDLDQLKLCSPDD 79
V W P+H GI GN + D+ + L+Q+ CSP +
Sbjct: 1093 VGVGWVPAHKGIGGNTEADEGVKKA--LEQMAPCSPPE 1128
>sp|P61561|ENW1_GORGO ERV-W1 provirus ancestral Env polyprotein OS=Gorilla gorilla
gorilla GN=ERVW-1 PE=3 SV=1
Length = 538
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 60 DQAARNPTDLDQLKLCSPDDFKPLAASLVRKEWQDQWNLVPVTNKLKSIKPLITNWDTSN 119
+ +A+NPT+ +C P DF+P + V +EW + + T+ L + PL++N + ++
Sbjct: 177 EVSAQNPTNC---WICLPLDFRPYVSIPVPEEWNNFSTEINTTSVL--VGPLVSNLEITH 231
Query: 120 QENRT 124
N T
Sbjct: 232 TSNLT 236
>sp|Q42910|PPDK_MESCR Pyruvate, phosphate dikinase, chloroplastic OS=Mesembryanthemum
crystallinum GN=PPD PE=2 SV=1
Length = 949
Score = 31.6 bits (70), Expect = 3.8, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 57 EDVDQAARNPTDLDQLKLCSPDDFKPLAAS--LVRKEWQDQWNL 98
EDV R P DLD ++ C P+ +K L + ++ + ++D ++
Sbjct: 356 EDVVAGIRTPEDLDTMRSCMPEAYKELVENCEILERHYKDMMDI 399
>sp|P61562|ENW1_HYLPI ERV-W1 provirus ancestral Env polyprotein OS=Hylobates pileatus
GN=ERVW-1 PE=3 SV=1
Length = 538
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 60 DQAARNPTDLDQLKLCSPDDFKPLAASLVRKEWQDQWNLVPVTNKLKSIKPLITNWDTSN 119
+ +A+NPT+ +C P DF+P + V ++W + + T+ L + PL++N + ++
Sbjct: 177 EVSAQNPTNC---WMCLPLDFRPYVSIPVPEQWNNFSTEINTTSVL--VGPLVSNLEITH 231
Query: 120 QENRT 124
N T
Sbjct: 232 TSNLT 236
>sp|Q8AII1|POL_SIVTN Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate TAN1)
GN=gag-pol PE=3 SV=4
Length = 1462
Score = 30.4 bits (67), Expect = 9.3, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 42 VRFMWCPSHCGIRGNEDVDQAA----RNPTDLDQLKLCSPDDFKPLAASLVRKEWQ---D 94
+ W P+H GI GNE+VD+ R LD + D K W+ D
Sbjct: 1145 IYLAWVPAHKGIGGNEEVDKLVSKNIRKILFLDGINEAQEDHDK------YHSNWKALAD 1198
Query: 95 QWNLVPVTNK 104
++NL PV K
Sbjct: 1199 EYNLPPVVAK 1208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,959,620
Number of Sequences: 539616
Number of extensions: 3121886
Number of successful extensions: 6240
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6238
Number of HSP's gapped (non-prelim): 15
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)