Query psy16114
Match_columns 202
No_of_seqs 132 out of 1356
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 21:15:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qio_A GAG-POL polyprotein; RN 99.2 1.9E-11 6.6E-16 92.3 4.9 63 6-68 72-146 (150)
2 3h08_A RNH (ribonuclease H); R 99.0 1.4E-10 4.7E-15 86.9 4.4 56 6-66 69-141 (146)
3 2qkb_A Ribonuclease H1, HS-RNA 99.0 8.9E-11 3.1E-15 88.8 3.3 61 7-68 78-150 (154)
4 1jl1_A Ribonuclease HI; RNAse 99.0 1.4E-10 4.8E-15 87.9 3.6 65 6-71 69-145 (155)
5 2e4l_A Ribonuclease HI, RNAse 99.0 4.5E-10 1.6E-14 85.4 4.6 63 6-69 71-145 (158)
6 3p1g_A Xenotropic murine leuke 98.9 3.5E-10 1.2E-14 86.7 2.9 62 6-68 87-155 (165)
7 2kq2_A Ribonuclease H-related 98.9 4.2E-11 1.4E-15 90.1 -2.7 43 24-69 95-137 (147)
8 1ril_A Ribonuclease H; hydrola 98.9 6.9E-10 2.4E-14 85.1 2.7 62 6-68 73-147 (166)
9 1mu2_A HIV-2 RT; HIV-2 reverse 98.8 7.5E-09 2.6E-13 93.2 6.5 56 7-66 497-554 (555)
10 2zd1_A Reverse transcriptase/r 98.8 5.1E-09 1.8E-13 94.3 5.4 56 7-66 500-557 (557)
11 2lsn_A Reverse transcriptase; 98.5 5.6E-08 1.9E-12 74.3 2.8 39 28-66 116-160 (165)
12 3hst_B Protein RV2228C/MT2287; 98.3 1.4E-06 4.8E-11 64.0 6.4 58 6-67 73-131 (141)
13 3u3g_D Ribonuclease H, RNAse H 98.2 1.7E-06 5.8E-11 63.3 4.6 57 6-66 76-134 (140)
14 2ehg_A Ribonuclease HI; RNAse 97.9 6.4E-06 2.2E-10 61.3 3.9 57 6-67 75-132 (149)
15 3alr_A Nanos protein; zinc-fin 75.7 0.99 3.4E-05 31.0 1.3 24 151-174 72-97 (106)
16 2i0f_A 6,7-dimethyl-8-ribityll 52.4 10 0.00035 28.1 2.9 33 31-65 34-66 (157)
17 2c92_A 6,7-dimethyl-8-ribityll 44.1 15 0.00053 27.2 2.8 32 31-64 39-71 (160)
18 2lnd_A De novo designed protei 38.1 28 0.00096 22.8 3.0 63 25-88 37-99 (112)
19 3nq4_A 6,7-dimethyl-8-ribityll 34.1 30 0.001 25.5 3.0 33 31-65 34-70 (156)
20 1c2y_A Protein (lumazine synth 34.1 27 0.00093 25.7 2.8 33 31-65 35-69 (156)
21 1rvv_A Riboflavin synthase; tr 32.5 29 0.001 25.5 2.7 33 31-65 34-69 (154)
22 1hqk_A 6,7-dimethyl-8-ribityll 32.4 29 0.001 25.4 2.7 33 31-65 34-69 (154)
23 2bhu_A Maltooligosyltrehalose 30.4 51 0.0017 29.4 4.5 35 25-59 192-226 (602)
24 1znf_A 31ST zinc finger from X 30.1 28 0.00095 15.7 1.6 15 1-15 6-20 (27)
25 1zbf_A Ribonuclease H-related 29.1 29 0.00099 24.9 2.2 53 7-61 78-139 (142)
26 1ejb_A Lumazine synthase; anal 28.8 34 0.0012 25.5 2.5 32 31-64 38-72 (168)
27 2kvh_A Zinc finger and BTB dom 28.7 21 0.00072 16.3 1.0 14 1-14 8-21 (27)
28 2kvf_A Zinc finger and BTB dom 28.1 22 0.00076 16.3 1.0 14 1-14 8-21 (28)
29 1sp2_A SP1F2; zinc finger, tra 27.9 34 0.0012 16.1 1.8 16 1-16 9-24 (31)
30 1ard_A Yeast transcription fac 26.4 38 0.0013 15.4 1.8 14 1-14 7-20 (29)
31 1wzl_A Alpha-amylase II; pullu 26.0 59 0.002 28.7 4.1 32 25-56 219-250 (585)
32 2cs3_A Protein C14ORF4, MY039 25.7 28 0.00095 22.8 1.3 22 149-170 14-36 (93)
33 1rim_A E6APC2 peptide; E6-bind 25.3 40 0.0014 16.5 1.8 15 1-15 7-21 (33)
34 2obx_A DMRL synthase 1, 6,7-di 25.2 56 0.0019 24.0 3.1 31 33-65 35-68 (157)
35 2fqc_A Conotoxin PL14A; alpha- 24.9 21 0.00073 17.8 0.5 7 133-139 12-18 (26)
36 1j0h_A Neopullulanase; beta-al 24.4 89 0.003 27.5 4.9 34 25-58 222-255 (588)
37 1sn9_A BBAT, tetrameric beta-B 24.2 25 0.00086 17.1 0.7 12 53-64 4-15 (26)
38 3m07_A Putative alpha amylase; 24.0 78 0.0027 28.3 4.5 35 25-59 202-236 (618)
39 1ua7_A Alpha-amylase; beta-alp 23.9 72 0.0025 26.7 4.1 32 25-56 74-105 (422)
40 1ea9_C Cyclomaltodextrinase; h 23.9 54 0.0019 28.9 3.4 32 25-56 218-249 (583)
41 1di0_A Lumazine synthase; tran 23.8 61 0.0021 23.8 3.1 32 32-65 33-67 (158)
42 3vgf_A Malto-oligosyltrehalose 22.0 91 0.0031 27.4 4.5 34 25-58 167-200 (558)
43 2elr_A Zinc finger protein 406 21.8 50 0.0017 16.1 1.8 14 1-14 14-27 (36)
44 2guy_A Alpha-amylase A; (beta- 21.3 88 0.003 26.6 4.1 32 25-56 97-128 (478)
45 4h0c_A Phospholipase/carboxyle 21.2 1.2E+02 0.0043 22.3 4.6 34 26-60 168-203 (210)
46 2elx_A Zinc finger protein 406 21.1 36 0.0012 16.5 1.1 14 1-14 12-25 (35)
47 4aef_A Neopullulanase (alpha-a 21.0 76 0.0026 28.3 3.8 32 25-56 285-316 (645)
48 1kz1_A 6,7-dimethyl-8-ribityll 20.2 57 0.0019 24.0 2.3 33 31-65 39-75 (159)
No 1
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.17 E-value=1.9e-11 Score=92.32 Aligned_cols=63 Identities=22% Similarity=0.276 Sum_probs=43.9
Q ss_pred CChHHHHHHHHcc-----------cCCCHHH-HHHHHHHHHHHhCCCceEEEEecccCCCccchhhhhhhcCCCC
Q psy16114 6 NGFISALSALSNI-----------KFTNPLV-SKAYSCWDLLTSNNKDVRFMWCPSHCGIRGNEDVDQAARNPTD 68 (202)
Q Consensus 6 ~~s~sal~al~~~-----------~~~~~~~-~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GNE~AD~~Ak~a~~ 68 (202)
-||+.++++|... ..+.|.. .++++.+..+..+...|.|.|||||+|++|||.||+||+.+..
T Consensus 72 tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~ 146 (150)
T 3qio_A 72 TDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIR 146 (150)
T ss_dssp ESCHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTS
T ss_pred eCcHHHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHH
Confidence 3888899988875 2333322 2344444433346788999999999999999999999998765
No 2
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.04 E-value=1.4e-10 Score=86.92 Aligned_cols=56 Identities=16% Similarity=0.048 Sum_probs=39.6
Q ss_pred CChHHHHHHHHc-c-----------cCC-----CHHHHHHHHHHHHHHhCCCceEEEEecccCCCccchhhhhhhcCC
Q psy16114 6 NGFISALSALSN-I-----------KFT-----NPLVSKAYSCWDLLTSNNKDVRFMWCPSHCGIRGNEDVDQAARNP 66 (202)
Q Consensus 6 ~~s~sal~al~~-~-----------~~~-----~~~~~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GNE~AD~~Ak~a 66 (202)
-||+.++++|.. . ..+ +.++.+|...+. ...|+|.|||||+|++|||.||+|||.+
T Consensus 69 tDS~~vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~-----~~~v~~~~V~gH~g~~~N~~AD~LA~~a 141 (146)
T 3h08_A 69 SDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTT-----LHRVTFHKVKGHSDNPYNSRADELARLA 141 (146)
T ss_dssp ESCHHHHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHH-----HSEEEEEECCC-CCSHHHHHHHHHHHHH
T ss_pred eChHHHHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHh-----hCceEEEEcCCcCCcHhHHHHHHHHHHH
Confidence 389999999887 1 122 234444444333 2469999999999999999999999954
No 3
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.03 E-value=8.9e-11 Score=88.78 Aligned_cols=61 Identities=23% Similarity=0.473 Sum_probs=43.7
Q ss_pred ChHHHHHHHHcc-----------cCCCHHH-HHHHHHHHHHHhCCCceEEEEecccCCCccchhhhhhhcCCCC
Q psy16114 7 GFISALSALSNI-----------KFTNPLV-SKAYSCWDLLTSNNKDVRFMWCPSHCGIRGNEDVDQAARNPTD 68 (202)
Q Consensus 7 ~s~sal~al~~~-----------~~~~~~~-~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GNE~AD~~Ak~a~~ 68 (202)
||+.++++|... ..+.|.. .++++.+..+.. +..|.|.|||||+|++|||.||+|||.+..
T Consensus 78 DS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~ 150 (154)
T 2qkb_A 78 NSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAK 150 (154)
T ss_dssp SCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHHHT
T ss_pred CcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc-CCceEEEEccCCCCCHhHHHHHHHHHHHHH
Confidence 889999998863 2232221 234444454543 567999999999999999999999996543
No 4
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.01 E-value=1.4e-10 Score=87.89 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=46.4
Q ss_pred CChHHHHHHHHcc-----------cCCCHHH-HHHHHHHHHHHhCCCceEEEEecccCCCccchhhhhhhcCCCCCCc
Q psy16114 6 NGFISALSALSNI-----------KFTNPLV-SKAYSCWDLLTSNNKDVRFMWCPSHCGIRGNEDVDQAARNPTDLDQ 71 (202)
Q Consensus 6 ~~s~sal~al~~~-----------~~~~~~~-~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GNE~AD~~Ak~a~~~~~ 71 (202)
-||+.++++|... .+|.|+. .++++.+..+.. ...|.|.|||||+|++|||.||+|||.+...+.
T Consensus 69 tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 145 (155)
T 1jl1_A 69 TDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG-QHQIKWEWVKGHAGHPENERADELARAAAMNPT 145 (155)
T ss_dssp ECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCC
T ss_pred eCHHHHHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHHHhccc
Confidence 3899999999861 2233321 234444555543 468999999999999999999999997655443
No 5
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=98.96 E-value=4.5e-10 Score=85.35 Aligned_cols=63 Identities=17% Similarity=0.243 Sum_probs=44.8
Q ss_pred CChHHHHHHHHc--------c---cCCCHHH-HHHHHHHHHHHhCCCceEEEEecccCCCccchhhhhhhcCCCCC
Q psy16114 6 NGFISALSALSN--------I---KFTNPLV-SKAYSCWDLLTSNNKDVRFMWCPSHCGIRGNEDVDQAARNPTDL 69 (202)
Q Consensus 6 ~~s~sal~al~~--------~---~~~~~~~-~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GNE~AD~~Ak~a~~~ 69 (202)
-||+.++++|.. . ..+.+.. .++++.+..+.. +..|.|.|||||+|++|||.||+|||.+...
T Consensus 71 tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 71 SDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp ECCHHHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred eCHHHHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 389999999988 1 2233321 134444454543 4689999999999999999999999965543
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=98.93 E-value=3.5e-10 Score=86.68 Aligned_cols=62 Identities=23% Similarity=0.225 Sum_probs=45.1
Q ss_pred CChHHHHHHHHcccCCCHHH-HHHHHHH-HHHHhCCCceEEEEecccCC-----CccchhhhhhhcCCCC
Q psy16114 6 NGFISALSALSNIKFTNPLV-SKAYSCW-DLLTSNNKDVRFMWCPSHCG-----IRGNEDVDQAARNPTD 68 (202)
Q Consensus 6 ~~s~sal~al~~~~~~~~~~-~~i~~~~-~~l~~~~~~i~l~WvPgH~g-----I~GNE~AD~~Ak~a~~ 68 (202)
-||+.++++|...+.+.|+. .+.++.+ ..+. .+..|.|.|||||+| ++|||.||+|||.+..
T Consensus 87 tDS~~vi~~iw~~~~g~~v~n~dl~~~l~~~l~-~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~ 155 (165)
T 3p1g_A 87 TDSRYAFATAHVHSEGREIKNKNEILALLKALF-LPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAM 155 (165)
T ss_dssp ECCHHHHHHHHSCCCSCCCSSHHHHHHHHHHTT-SBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHH
T ss_pred EchHHHHhhhhcccCCCcccCHHHHHHHHHHHh-cCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHh
Confidence 48899999986545555532 1323333 3343 678999999999999 9999999999996543
No 7
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=98.91 E-value=4.2e-11 Score=90.12 Aligned_cols=43 Identities=16% Similarity=0.127 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEecccCCCccchhhhhhhcCCCCC
Q psy16114 24 LVSKAYSCWDLLTSNNKDVRFMWCPSHCGIRGNEDVDQAARNPTDL 69 (202)
Q Consensus 24 ~~~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GNE~AD~~Ak~a~~~ 69 (202)
......+.+..|.. .|.|.|||||+|++|||.||+|||.+...
T Consensus 95 ~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 137 (147)
T 2kq2_A 95 FTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGI 137 (147)
T ss_dssp HHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhc
Confidence 33444555555543 89999999999999999999999965543
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=98.87 E-value=6.9e-10 Score=85.06 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=44.7
Q ss_pred CChHHHHHHHHc----------c--cCCCHHH-HHHHHHHHHHHhCCCceEEEEecccCCCccchhhhhhhcCCCC
Q psy16114 6 NGFISALSALSN----------I--KFTNPLV-SKAYSCWDLLTSNNKDVRFMWCPSHCGIRGNEDVDQAARNPTD 68 (202)
Q Consensus 6 ~~s~sal~al~~----------~--~~~~~~~-~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GNE~AD~~Ak~a~~ 68 (202)
-||+.++.+|.. . +++.++. .++++.+..+.. ...|.|.|||||+|++|||.||+|||.+..
T Consensus 73 tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~ 147 (166)
T 1ril_A 73 TDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMA-PHRVRFHFVKGHTGHPENERVDREARRQAQ 147 (166)
T ss_dssp CCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT-TSEEECCCCCGGGSCTHHHHHHHHHHHHHT
T ss_pred eChHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHh-cCeEEEEEeeCCCCchhHHHHHHHHHHHHH
Confidence 489999999988 2 2333321 234444555543 468999999999999999999999995443
No 9
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=98.77 E-value=7.5e-09 Score=93.19 Aligned_cols=56 Identities=18% Similarity=0.381 Sum_probs=46.0
Q ss_pred ChHHHHHHHHcc--cCCCHHHHHHHHHHHHHHhCCCceEEEEecccCCCccchhhhhhhcCC
Q psy16114 7 GFISALSALSNI--KFTNPLVSKAYSCWDLLTSNNKDVRFMWCPSHCGIRGNEDVDQAARNP 66 (202)
Q Consensus 7 ~s~sal~al~~~--~~~~~~~~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GNE~AD~~Ak~a 66 (202)
||+-++++|... .+++++..++.+. +. .+..|.|.|||||+|++|||.||+|||.+
T Consensus 497 DS~~v~~~i~~~~~~~~~~l~~~~~~~---~~-~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 554 (555)
T 1mu2_A 497 DSQYVMGIVASQPTESESKIVNQIIEE---MI-KKEAIYVAWVPAHKGIGGNQEVDHLVSQG 554 (555)
T ss_dssp SCHHHHHHHHTCCSEESCHHHHHHHHH---HH-HCSEEEEEECCSSSCCTTHHHHHHHHHTT
T ss_pred ehHHHHHHHhcccccccHHHHHHHHHH---hc-cCCcEEEEEEECCCCChhHHHHHHHHHhh
Confidence 899999999976 4677776655443 32 36789999999999999999999999976
No 10
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=98.77 E-value=5.1e-09 Score=94.29 Aligned_cols=56 Identities=30% Similarity=0.436 Sum_probs=44.1
Q ss_pred ChHHHHHHHHcc--cCCCHHHHHHHHHHHHHHhCCCceEEEEecccCCCccchhhhhhhcCC
Q psy16114 7 GFISALSALSNI--KFTNPLVSKAYSCWDLLTSNNKDVRFMWCPSHCGIRGNEDVDQAARNP 66 (202)
Q Consensus 7 ~s~sal~al~~~--~~~~~~~~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GNE~AD~~Ak~a 66 (202)
||+.++++|... ++++++..++.+. +.. ...|.|.|||||+|++|||.||+|||.+
T Consensus 500 DS~~vi~~i~~~~~~~~~~l~~~~~~~---l~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 500 DSQYALGIIQAQPDKSESELVNQIIEQ---LIK-KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp CCHHHHHHHTTCCSEESSHHHHHHHHH---HHH-CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred ChHHHHHHHhcCCccCCHHHHHHHHHH---Hhc-CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 899999999987 5578887766544 333 4579999999999999999999999864
No 11
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=98.47 E-value=5.6e-08 Score=74.33 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCceEEEEecccCCC------ccchhhhhhhcCC
Q psy16114 28 AYSCWDLLTSNNKDVRFMWCPSHCGI------RGNEDVDQAARNP 66 (202)
Q Consensus 28 i~~~~~~l~~~~~~i~l~WvPgH~gI------~GNE~AD~~Ak~a 66 (202)
.++.+..+......|+|.|||||+|+ +|||+||+||+.+
T Consensus 116 L~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~g 160 (165)
T 2lsn_A 116 KWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQG 160 (165)
T ss_dssp HHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHh
Confidence 44445544444568999999999996 5899999999853
No 12
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=98.28 E-value=1.4e-06 Score=63.97 Aligned_cols=58 Identities=21% Similarity=0.290 Sum_probs=49.0
Q ss_pred CChHHHHHHHHcc-cCCCHHHHHHHHHHHHHHhCCCceEEEEecccCCCccchhhhhhhcCCC
Q psy16114 6 NGFISALSALSNI-KFTNPLVSKAYSCWDLLTSNNKDVRFMWCPSHCGIRGNEDVDQAARNPT 67 (202)
Q Consensus 6 ~~s~sal~al~~~-~~~~~~~~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GNE~AD~~Ak~a~ 67 (202)
-||+.++++|... +..++.+..+++.+..+......|+|.|||+ +|||.||+|||.+.
T Consensus 73 tDS~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~ 131 (141)
T 3hst_B 73 MDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDAM 131 (141)
T ss_dssp ESCHHHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHH
T ss_pred eChHHHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHH
Confidence 3899999999886 6777777788888888887778999999996 79999999999543
No 13
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=98.16 E-value=1.7e-06 Score=63.26 Aligned_cols=57 Identities=11% Similarity=0.211 Sum_probs=42.9
Q ss_pred CChHHHHHHHHcc-cCCCHHHHHHHHHHHHH-HhCCCceEEEEecccCCCccchhhhhhhcCC
Q psy16114 6 NGFISALSALSNI-KFTNPLVSKAYSCWDLL-TSNNKDVRFMWCPSHCGIRGNEDVDQAARNP 66 (202)
Q Consensus 6 ~~s~sal~al~~~-~~~~~~~~~i~~~~~~l-~~~~~~i~l~WvPgH~gI~GNE~AD~~Ak~a 66 (202)
-||+.++++|... +..++.+..+++.+..+ ...-..|+|.|||. +|||.||+|||.+
T Consensus 76 tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~----~~N~~AD~LA~~a 134 (140)
T 3u3g_D 76 MDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPR----EKNARADELVNEA 134 (140)
T ss_dssp ESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCG----GGGHHHHHHHHHH
T ss_pred eChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCc----hhhHHHHHHHHHH
Confidence 3899999999886 44455455555556665 55556899999995 7999999999854
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=97.93 E-value=6.4e-06 Score=61.26 Aligned_cols=57 Identities=14% Similarity=0.220 Sum_probs=38.3
Q ss_pred CChHHHHHHHHcc-cCCCHHHHHHHHHHHHHHhCCCceEEEEecccCCCccchhhhhhhcCCC
Q psy16114 6 NGFISALSALSNI-KFTNPLVSKAYSCWDLLTSNNKDVRFMWCPSHCGIRGNEDVDQAARNPT 67 (202)
Q Consensus 6 ~~s~sal~al~~~-~~~~~~~~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GNE~AD~~Ak~a~ 67 (202)
-||+.++..|... +..++.....++.+..+...- .|.|.|||+| +||.||+|||.+.
T Consensus 75 tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~~----~N~~AD~LA~~a~ 132 (149)
T 2ehg_A 75 GDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPRE----ENKEADRLSRVAY 132 (149)
T ss_dssp ESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCGG----GCHHHHHHHHHHH
T ss_pred eChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCCc----ccHHHHHHHHHHH
Confidence 3888999999886 332233334444444333322 4999999994 9999999999543
No 15
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=75.73 E-value=0.99 Score=31.02 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=20.7
Q ss_pred CCcc-CCCCCcccccc-cccccHHHH
Q psy16114 151 PNCP-CGEHLSVRHIL-TCHRHAQIR 174 (202)
Q Consensus 151 ~~C~-Cg~~et~~H~l-~Cp~~~~~R 174 (202)
-.|+ ||+..+-.|.+ .||......
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~~~ 97 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDKNY 97 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGGGG
T ss_pred ccCCCCCCcCCcccceecCCCCCCcc
Confidence 5799 99999999999 999877543
No 16
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=52.36 E-value=10 Score=28.07 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=25.1
Q ss_pred HHHHHHhCCCceEEEEecccCCCccchhhhhhhcC
Q psy16114 31 CWDLLTSNNKDVRFMWCPSHCGIRGNEDVDQAARN 65 (202)
Q Consensus 31 ~~~~l~~~~~~i~l~WvPgH~gI~GNE~AD~~Ak~ 65 (202)
++..|...|.+|.+.||||=-.||- .|.++|+.
T Consensus 34 A~~~l~~~G~~i~v~~VPGafEiP~--aa~~la~~ 66 (157)
T 2i0f_A 34 AKAALDEAGATYDVVTVPGALEIPA--TISFALDG 66 (157)
T ss_dssp HHHHHHHTTCEEEEEEESSGGGHHH--HHHHHHHH
T ss_pred HHHHHHHcCCCeEEEECCcHHHHHH--HHHHHHhh
Confidence 4567888889999999999876663 46666654
No 17
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=44.07 E-value=15 Score=27.15 Aligned_cols=32 Identities=13% Similarity=0.015 Sum_probs=25.4
Q ss_pred HHHHHHhCCC-ceEEEEecccCCCccchhhhhhhc
Q psy16114 31 CWDLLTSNNK-DVRFMWCPSHCGIRGNEDVDQAAR 64 (202)
Q Consensus 31 ~~~~l~~~~~-~i~l~WvPgH~gI~GNE~AD~~Ak 64 (202)
++..|...|. +|.+.||||=-.||- .|.++|+
T Consensus 39 A~~~l~~~G~~~i~v~~VPGafEiP~--aak~la~ 71 (160)
T 2c92_A 39 ARKVAAGCGLDDPTVVRVLGAIEIPV--VAQELAR 71 (160)
T ss_dssp HHHHHHHTTCSCCEEEEESSGGGHHH--HHHHHHT
T ss_pred HHHHHHHcCCCceEEEECCcHHHHHH--HHHHHHh
Confidence 4467888887 899999999887774 5677776
No 18
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=38.10 E-value=28 Score=22.78 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCCceEEEEecccCCCccchhhhhhhcCCCCCCccCCCCchhchHHHHHHH
Q psy16114 25 VSKAYSCWDLLTSNNKDVRFMWCPSHCGIRGNEDVDQAARNPTDLDQLKLCSPDDFKPLAASLV 88 (202)
Q Consensus 25 ~~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GNE~AD~~Ak~a~~~~~~~~~~~~~~k~~~k~~~ 88 (202)
..+|++.|..++..|+.+. .+|-|-+.-.-||.-.++-|+...-......-+.++-+..++-+
T Consensus 37 sqdirdiiksmkdngkplv-vfvngasqndvnefqneakkegvsydvlkstdpeeltqrvrefl 99 (112)
T 2lnd_A 37 SQDIRDIIKSMKDNGKPLV-VFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFL 99 (112)
T ss_dssp HHHHHHHHHHHTTCCSCEE-EEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCeEE-EEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHH
Confidence 5678999999999998864 45888877777887777777665444443344445544444433
No 19
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=34.07 E-value=30 Score=25.46 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=24.9
Q ss_pred HHHHHHhCC-C---ceEEEEecccCCCccchhhhhhhcC
Q psy16114 31 CWDLLTSNN-K---DVRFMWCPSHCGIRGNEDVDQAARN 65 (202)
Q Consensus 31 ~~~~l~~~~-~---~i~l~WvPgH~gI~GNE~AD~~Ak~ 65 (202)
++..|...| . +|.+.||||=-.|| =.|.++|+.
T Consensus 34 A~~~l~~~G~v~~~~i~v~~VPGafEiP--~aa~~la~~ 70 (156)
T 3nq4_A 34 AVDALTRIGQVKDDNITVVWVPGAYELP--LATEALAKS 70 (156)
T ss_dssp HHHHHHHTTCCCTTSEEEEEESSTTTHH--HHHHHHHHH
T ss_pred HHHHHHHcCCCcccceEEEEcCcHHHHH--HHHHHHHhc
Confidence 455677777 3 79999999987776 457777774
No 20
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=34.06 E-value=27 Score=25.69 Aligned_cols=33 Identities=12% Similarity=0.352 Sum_probs=24.5
Q ss_pred HHHHHHhCCC--ceEEEEecccCCCccchhhhhhhcC
Q psy16114 31 CWDLLTSNNK--DVRFMWCPSHCGIRGNEDVDQAARN 65 (202)
Q Consensus 31 ~~~~l~~~~~--~i~l~WvPgH~gI~GNE~AD~~Ak~ 65 (202)
++..|...|. +|.+.||||=-.||- .|.++|+.
T Consensus 35 a~~~l~~~Gv~~~i~v~~VPGafEiP~--aa~~la~~ 69 (156)
T 1c2y_A 35 ALDTFKKYSVNEDIDVVWVPGAYELGV--TAQALGKS 69 (156)
T ss_dssp HHHHHHHTTCCSCCEEEEESSHHHHHH--HHHHHHHT
T ss_pred HHHHHHHcCCCCceEEEECCcHHHHHH--HHHHHHhc
Confidence 4467777884 799999999866663 56777775
No 21
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=32.55 E-value=29 Score=25.46 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=24.5
Q ss_pred HHHHHHhCCC---ceEEEEecccCCCccchhhhhhhcC
Q psy16114 31 CWDLLTSNNK---DVRFMWCPSHCGIRGNEDVDQAARN 65 (202)
Q Consensus 31 ~~~~l~~~~~---~i~l~WvPgH~gI~GNE~AD~~Ak~ 65 (202)
++..|...|. +|.+.||||=-.||- .|.++|+.
T Consensus 34 a~~~l~~~gv~~~~i~v~~VPGafEiP~--aa~~la~~ 69 (154)
T 1rvv_A 34 AEDALLRHGVDTNDIDVAWVPGAFEIPF--AAKKMAET 69 (154)
T ss_dssp HHHHHHHTTCCGGGEEEEEESSGGGHHH--HHHHHHHT
T ss_pred HHHHHHHcCCCccceEEEECCcHHHHHH--HHHHHHhc
Confidence 4467777774 689999999877763 56777775
No 22
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=32.40 E-value=29 Score=25.43 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=24.4
Q ss_pred HHHHHHhCCC---ceEEEEecccCCCccchhhhhhhcC
Q psy16114 31 CWDLLTSNNK---DVRFMWCPSHCGIRGNEDVDQAARN 65 (202)
Q Consensus 31 ~~~~l~~~~~---~i~l~WvPgH~gI~GNE~AD~~Ak~ 65 (202)
++..|...|. +|.+.||||=-.||- .|.++|+.
T Consensus 34 a~~~l~~~gv~~~~i~v~~VPGafEiP~--aa~~la~~ 69 (154)
T 1hqk_A 34 AIDCIVRHGGREEDITLVRVPGSWEIPV--AAGELARK 69 (154)
T ss_dssp HHHHHHHTTCCGGGEEEEEESSGGGHHH--HHHHHHTC
T ss_pred HHHHHHHcCCCccceEEEECCcHHHHHH--HHHHHHhc
Confidence 4467777774 689999999877763 56777775
No 23
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=30.38 E-value=51 Score=29.37 Aligned_cols=35 Identities=17% Similarity=-0.018 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCceEEEEecccCCCccchhh
Q psy16114 25 VSKAYSCWDLLTSNNKDVRFMWCPSHCGIRGNEDV 59 (202)
Q Consensus 25 ~~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GNE~A 59 (202)
..+....+..++.+|..|-+-+|+.|++-.+|...
T Consensus 192 ~~d~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~ 226 (602)
T 2bhu_A 192 PEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNYLS 226 (602)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccccccCCcccc
Confidence 56788889999999999999999999998887544
No 24
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=30.11 E-value=28 Score=15.68 Aligned_cols=15 Identities=33% Similarity=0.286 Sum_probs=11.4
Q ss_pred CCCCCCChHHHHHHH
Q psy16114 1 MCPKGNGFISALSAL 15 (202)
Q Consensus 1 ~~~~~~~s~sal~al 15 (202)
.|+|.|.+.+.|..=
T Consensus 6 ~C~k~f~~~~~l~~H 20 (27)
T 1znf_A 6 LCERSFVEKSALSRH 20 (27)
T ss_dssp SSCCBCSSHHHHHHH
T ss_pred CCCCcCCCHHHHHHH
Confidence 488999988877653
No 25
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=29.07 E-value=29 Score=24.90 Aligned_cols=53 Identities=11% Similarity=-0.034 Sum_probs=34.8
Q ss_pred ChHHHHHHHHccc---------CCCHHHHHHHHHHHHHHhCCCceEEEEecccCCCccchhhhh
Q psy16114 7 GFISALSALSNIK---------FTNPLVSKAYSCWDLLTSNNKDVRFMWCPSHCGIRGNEDVDQ 61 (202)
Q Consensus 7 ~s~sal~al~~~~---------~~~~~~~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GNE~AD~ 61 (202)
||+-++..+.+.. ....+...+..+..-++.. .++...|.-|++.-||..||.
T Consensus 78 DS~~vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~--~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 78 NSQTAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTH--TYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp SCHHHHHHHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHHHC--CCCCCEEECCHHHHCSCTTCC
T ss_pred ehHHHHHHHHcCCccCCCCCCcccHHHHHHHHHHHHHHhhC--CCceeEEEeccCccCcCcccc
Confidence 7777777777662 1223444555555556554 455666888999999999995
No 26
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=28.81 E-value=34 Score=25.51 Aligned_cols=32 Identities=6% Similarity=0.033 Sum_probs=23.6
Q ss_pred HHHHHHhCCC---ceEEEEecccCCCccchhhhhhhc
Q psy16114 31 CWDLLTSNNK---DVRFMWCPSHCGIRGNEDVDQAAR 64 (202)
Q Consensus 31 ~~~~l~~~~~---~i~l~WvPgH~gI~GNE~AD~~Ak 64 (202)
++..|...|. +|.+.||||=-.||- .|.++|+
T Consensus 38 A~~~L~~~Gv~~~~i~v~~VPGafEiP~--aak~la~ 72 (168)
T 1ejb_A 38 AIERMASLGVEENNIIIETVPGSYELPW--GTKRFVD 72 (168)
T ss_dssp HHHHHHHTTCCGGGEEEEECSSGGGHHH--HHHHHHH
T ss_pred HHHHHHHcCCCccceEEEECCcHHHHHH--HHHHHHh
Confidence 4467777774 689999999877763 4566775
No 27
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.70 E-value=21 Score=16.31 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=10.7
Q ss_pred CCCCCCChHHHHHH
Q psy16114 1 MCPKGNGFISALSA 14 (202)
Q Consensus 1 ~~~~~~~s~sal~a 14 (202)
.|+|.|...+.|..
T Consensus 8 ~C~k~f~~~~~l~~ 21 (27)
T 2kvh_A 8 LCPQRSRDFSAMTK 21 (27)
T ss_dssp SSSCEESSHHHHHH
T ss_pred CcChhhCCHHHHHH
Confidence 48888988887754
No 28
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.13 E-value=22 Score=16.30 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=10.8
Q ss_pred CCCCCCChHHHHHH
Q psy16114 1 MCPKGNGFISALSA 14 (202)
Q Consensus 1 ~~~~~~~s~sal~a 14 (202)
.|+|.|.+.+.|..
T Consensus 8 ~C~k~f~~~~~l~~ 21 (28)
T 2kvf_A 8 VCGKRFSLKHQMET 21 (28)
T ss_dssp SSCCEESCHHHHHH
T ss_pred CCCcccCCHHHHHH
Confidence 48889988887764
No 29
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=27.91 E-value=34 Score=16.14 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=12.3
Q ss_pred CCCCCCChHHHHHHHH
Q psy16114 1 MCPKGNGFISALSALS 16 (202)
Q Consensus 1 ~~~~~~~s~sal~al~ 16 (202)
.|+|.|...+.|..=.
T Consensus 9 ~C~k~f~~~~~L~~H~ 24 (31)
T 1sp2_A 9 YCGKRFTRSDELQRHK 24 (31)
T ss_dssp TCCCBCSSHHHHHHHH
T ss_pred CCCcccCCHhHHHHHH
Confidence 3889999988887643
No 30
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=26.37 E-value=38 Score=15.36 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=10.9
Q ss_pred CCCCCCChHHHHHH
Q psy16114 1 MCPKGNGFISALSA 14 (202)
Q Consensus 1 ~~~~~~~s~sal~a 14 (202)
.|++.|...+.|..
T Consensus 7 ~C~~~f~~~~~l~~ 20 (29)
T 1ard_A 7 VCTRAFARQEHLKR 20 (29)
T ss_dssp TTCCBCSSHHHHHH
T ss_pred CCCcccCCHHHHHH
Confidence 48889988887765
No 31
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=25.98 E-value=59 Score=28.67 Aligned_cols=32 Identities=9% Similarity=-0.113 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhCCCceEEEEecccCCCccc
Q psy16114 25 VSKAYSCWDLLTSNNKDVRFMWCPSHCGIRGN 56 (202)
Q Consensus 25 ~~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GN 56 (202)
..+....+..++++|..|-+-|||.|++-...
T Consensus 219 ~~dfk~lv~~~H~~Gi~VilD~V~NH~~~~~~ 250 (585)
T 1wzl_A 219 LPTFRRLVDEAHRRGIKIILDAVFNHAGDQFF 250 (585)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECCSBCCTTSH
T ss_pred HHHHHHHHHHHHHCCCEEEEEEcCCcCCCccH
Confidence 46788889999999999999999999986543
No 32
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=25.65 E-value=28 Score=22.79 Aligned_cols=22 Identities=32% Similarity=0.721 Sum_probs=17.3
Q ss_pred CCCCcc-CCCCCccccccccccc
Q psy16114 149 DPPNCP-CGEHLSVRHILTCHRH 170 (202)
Q Consensus 149 ~~~~C~-Cg~~et~~H~l~Cp~~ 170 (202)
....|. |.++.--.||+.||.-
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv 36 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSV 36 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSC
T ss_pred CeeEeecchhhhccCceeeCCCc
Confidence 345688 9998878899899963
No 33
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=25.28 E-value=40 Score=16.46 Aligned_cols=15 Identities=33% Similarity=0.253 Sum_probs=11.3
Q ss_pred CCCCCCChHHHHHHH
Q psy16114 1 MCPKGNGFISALSAL 15 (202)
Q Consensus 1 ~~~~~~~s~sal~al 15 (202)
.|+|.|...+.|..=
T Consensus 7 ~C~k~F~~~~~L~~H 21 (33)
T 1rim_A 7 ECPKRFMRSDHLSKH 21 (33)
T ss_dssp SSCCCCSSHHHHHHH
T ss_pred CCCchhCCHHHHHHH
Confidence 488999888877653
No 34
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=25.16 E-value=56 Score=23.99 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=21.7
Q ss_pred HHHHhCCC---ceEEEEecccCCCccchhhhhhhcC
Q psy16114 33 DLLTSNNK---DVRFMWCPSHCGIRGNEDVDQAARN 65 (202)
Q Consensus 33 ~~l~~~~~---~i~l~WvPgH~gI~GNE~AD~~Ak~ 65 (202)
..|...|. +|.+.||||=-.||- .|.++|+.
T Consensus 35 ~~l~~~Gv~~~~i~v~~VPGafEiP~--aa~~la~~ 68 (157)
T 2obx_A 35 AEMADIGGDRFAVDVFDVPGAYEIPL--HARTLAET 68 (157)
T ss_dssp HHHHHHHTTSEEEEEEEESSGGGHHH--HHHHHHHH
T ss_pred HHHHHcCCCccceEEEECCcHHHHHH--HHHHHHhc
Confidence 45555553 589999999877763 56777764
No 35
>2fqc_A Conotoxin PL14A; alpha-helix, disulfide bonds; NMR {Synthetic}
Probab=24.88 E-value=21 Score=17.76 Aligned_cols=7 Identities=29% Similarity=0.273 Sum_probs=4.3
Q ss_pred hhcCccc
Q psy16114 133 RIGHTRL 139 (202)
Q Consensus 133 RTGH~~l 139 (202)
|+||+.+
T Consensus 12 R~g~GH~ 18 (26)
T 2fqc_A 12 RAGIGHK 18 (26)
T ss_dssp HHTGGGT
T ss_pred hccCCcc
Confidence 6666654
No 36
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=24.43 E-value=89 Score=27.53 Aligned_cols=34 Identities=15% Similarity=0.009 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhCCCceEEEEecccCCCccchh
Q psy16114 25 VSKAYSCWDLLTSNNKDVRFMWCPSHCGIRGNED 58 (202)
Q Consensus 25 ~~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GNE~ 58 (202)
..+....+..++++|..|-+-|||.|++-....-
T Consensus 222 ~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~f 255 (588)
T 1j0h_A 222 KETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPF 255 (588)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCcCcccchhH
Confidence 4678888999999999999999999998765433
No 37
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=24.24 E-value=25 Score=17.14 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=9.0
Q ss_pred Cccchhhhhhhc
Q psy16114 53 IRGNEDVDQAAR 64 (202)
Q Consensus 53 I~GNE~AD~~Ak 64 (202)
|+.-+-||++||
T Consensus 4 ipsydfadelak 15 (26)
T 1sn9_A 4 IPSYDFADELAK 15 (26)
T ss_dssp BTTBCHHHHHHH
T ss_pred CCccchHHHHHH
Confidence 556678888887
No 38
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=24.00 E-value=78 Score=28.34 Aligned_cols=35 Identities=17% Similarity=0.020 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCCceEEEEecccCCCccchhh
Q psy16114 25 VSKAYSCWDLLTSNNKDVRFMWCPSHCGIRGNEDV 59 (202)
Q Consensus 25 ~~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GNE~A 59 (202)
..+....+..++.+|..|-+-+|+.|+|-.++-..
T Consensus 202 ~~~~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~ 236 (618)
T 3m07_A 202 PDDFKAFIDAAHGYGLSVVLDIVLNHFGPEGNYLP 236 (618)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCHH
T ss_pred HHHHHHHHHHHHHCCCEEEEeecCccCCCCccccc
Confidence 46788889999999999999999999998877654
No 39
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=23.95 E-value=72 Score=26.72 Aligned_cols=32 Identities=6% Similarity=-0.186 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhCCCceEEEEecccCCCccc
Q psy16114 25 VSKAYSCWDLLTSNNKDVRFMWCPSHCGIRGN 56 (202)
Q Consensus 25 ~~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GN 56 (202)
..+..+.+++++.+|..|-+-|||.|++-...
T Consensus 74 ~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~~ 105 (422)
T 1ua7_A 74 EQEFKEMCAAAEEYGIKVIVDAVINHTTFDYA 105 (422)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECCSBCCSCTT
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccCcccCCcc
Confidence 56788889999999999999999999986543
No 40
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=23.92 E-value=54 Score=28.94 Aligned_cols=32 Identities=16% Similarity=-0.053 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhCCCceEEEEecccCCCccc
Q psy16114 25 VSKAYSCWDLLTSNNKDVRFMWCPSHCGIRGN 56 (202)
Q Consensus 25 ~~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GN 56 (202)
..+....+..++.+|..|-+-|||.|++-...
T Consensus 218 ~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~ 249 (583)
T 1ea9_C 218 KDTLKKLVDLCHERGIRVLLDAVFNHSGRTFP 249 (583)
T ss_dssp HHHHHHHHHHHTTTTCEEEEECCCSBCCTTTH
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCCCccH
Confidence 46788889999999999999999999986543
No 41
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=23.79 E-value=61 Score=23.79 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=22.6
Q ss_pred HHHHHhCCC---ceEEEEecccCCCccchhhhhhhcC
Q psy16114 32 WDLLTSNNK---DVRFMWCPSHCGIRGNEDVDQAARN 65 (202)
Q Consensus 32 ~~~l~~~~~---~i~l~WvPgH~gI~GNE~AD~~Ak~ 65 (202)
+..|...|. +|.+.||||=-.||- .|.++|+.
T Consensus 33 ~~~l~~~gv~~~~i~v~~VPGafEiP~--aa~~la~~ 67 (158)
T 1di0_A 33 VAELAAKTGGSVEVEIFDVPGAYEIPL--HAKTLART 67 (158)
T ss_dssp HHHHHHHHTTSEEEEEEEESSGGGHHH--HHHHHHHT
T ss_pred HHHHHHcCCCccceEEEECCcHHHHHH--HHHHHHhc
Confidence 345555553 589999999877763 56777875
No 42
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A
Probab=22.03 E-value=91 Score=27.35 Aligned_cols=34 Identities=18% Similarity=-0.005 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCCceEEEEecccCCCccchh
Q psy16114 25 VSKAYSCWDLLTSNNKDVRFMWCPSHCGIRGNED 58 (202)
Q Consensus 25 ~~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GNE~ 58 (202)
..+....+..++.+|..|-+-||+.|++-.++-.
T Consensus 167 ~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~~~~ 200 (558)
T 3vgf_A 167 PEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYM 200 (558)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCG
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeeccccCCCCcc
Confidence 5678889999999999999999999999777654
No 43
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.76 E-value=50 Score=16.06 Aligned_cols=14 Identities=29% Similarity=0.321 Sum_probs=11.1
Q ss_pred CCCCCCChHHHHHH
Q psy16114 1 MCPKGNGFISALSA 14 (202)
Q Consensus 1 ~~~~~~~s~sal~a 14 (202)
.|+|.|.+.+.|..
T Consensus 14 ~C~k~f~~~~~l~~ 27 (36)
T 2elr_A 14 MCGKKFKSKGTLKS 27 (36)
T ss_dssp TTCCBCSSHHHHHH
T ss_pred cCCCCcCchHHHHH
Confidence 48899998887764
No 44
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=21.35 E-value=88 Score=26.57 Aligned_cols=32 Identities=13% Similarity=0.071 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhCCCceEEEEecccCCCccc
Q psy16114 25 VSKAYSCWDLLTSNNKDVRFMWCPSHCGIRGN 56 (202)
Q Consensus 25 ~~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GN 56 (202)
..+..+.+.+++.+|..|-+-+||.|++-.+.
T Consensus 97 ~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~ 128 (478)
T 2guy_A 97 ADDLKALSSALHERGMYLMVDVVANHMGYDGA 128 (478)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCEEBC
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcccCCCCCC
Confidence 56788899999999999999999999987543
No 45
>4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans}
Probab=21.24 E-value=1.2e+02 Score=22.28 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCCCceEEEEecc--cCCCccchhhh
Q psy16114 26 SKAYSCWDLLTSNNKDVRFMWCPS--HCGIRGNEDVD 60 (202)
Q Consensus 26 ~~i~~~~~~l~~~~~~i~l~WvPg--H~gI~GNE~AD 60 (202)
....+....|+..|..|++...|| | +|...|..|
T Consensus 168 ~~~~~~~~~L~~~g~~v~~~~ypg~gH-~i~~~el~~ 203 (210)
T 4h0c_A 168 SRVQESVTILEDMNAAVSQVVYPGRPH-TISGDEIQL 203 (210)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEETCCS-SCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCCCC-CcCHHHHHH
Confidence 456677788999999999999995 6 576666554
No 46
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.10 E-value=36 Score=16.49 Aligned_cols=14 Identities=21% Similarity=0.135 Sum_probs=10.7
Q ss_pred CCCCCCChHHHHHH
Q psy16114 1 MCPKGNGFISALSA 14 (202)
Q Consensus 1 ~~~~~~~s~sal~a 14 (202)
.|+|.|...+.|..
T Consensus 12 ~C~k~f~~~~~L~~ 25 (35)
T 2elx_A 12 LCLKKFVSSIRLRS 25 (35)
T ss_dssp SSCCEESSHHHHHH
T ss_pred CCcchhCCHHHHHH
Confidence 48888888887754
No 47
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=21.00 E-value=76 Score=28.31 Aligned_cols=32 Identities=9% Similarity=-0.165 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhCCCceEEEEecccCCCccc
Q psy16114 25 VSKAYSCWDLLTSNNKDVRFMWCPSHCGIRGN 56 (202)
Q Consensus 25 ~~~i~~~~~~l~~~~~~i~l~WvPgH~gI~GN 56 (202)
..+....+.+++.+|..|-|-|||.|+|....
T Consensus 285 ~~df~~LV~~aH~~GI~VIlD~V~NHts~~h~ 316 (645)
T 4aef_A 285 DRAFVDLLSELKRFDIKVILDGVFHHTSFFHP 316 (645)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCTTSH
T ss_pred HHHHHHHHHHhhhcCCEEEEEecccccccCCc
Confidence 35678888999999999999999999986543
No 48
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=20.17 E-value=57 Score=24.02 Aligned_cols=33 Identities=3% Similarity=0.140 Sum_probs=23.3
Q ss_pred HHHHHHh-CCC---ceEEEEecccCCCccchhhhhhhcC
Q psy16114 31 CWDLLTS-NNK---DVRFMWCPSHCGIRGNEDVDQAARN 65 (202)
Q Consensus 31 ~~~~l~~-~~~---~i~l~WvPgH~gI~GNE~AD~~Ak~ 65 (202)
++..|.. .|. +|.+.||||=-.||- .|.++|+.
T Consensus 39 a~~~l~~~~Gv~~~~i~v~~VPGafEiP~--aa~~la~~ 75 (159)
T 1kz1_A 39 AVETMIEKHDVKLENIDIESVPGSWELPQ--GIRASIAR 75 (159)
T ss_dssp HHHHHHHHHCCCGGGEEEEECSSGGGHHH--HHHHHHHH
T ss_pred HHHHHHHHcCCCccceEEEECCcHHHHHH--HHHHHHhc
Confidence 3456666 564 699999999877763 56777764
Done!