RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16114
         (202 letters)



>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 2
           [TaxId: 11709]}
          Length = 126

 Score = 34.1 bits (77), Expect = 0.003
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 27  KAYSCWDLLTSNNKDVRFMWCPSHCGIRGNEDVDQAAR 64
           K  +         + +   W P+H GI GN++VD    
Sbjct: 86  KIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVS 123


>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
           562]}
          Length = 152

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 4/37 (10%)

Query: 38  NNKDVRFMWCPSHCGIRGNEDVD----QAARNPTDLD 70
               +++ W   H G   NE  D     AA NPT  D
Sbjct: 110 GQHQIKWEWVKGHAGHPENERADELARAAAMNPTLED 146


>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
           [TaxId: 274]}
          Length = 147

 Score = 33.8 bits (76), Expect = 0.005
 Identities = 13/35 (37%), Positives = 15/35 (42%)

Query: 31  CWDLLTSNNKDVRFMWCPSHCGIRGNEDVDQAARN 65
              LL      VRF +   H G   NE VD+ AR 
Sbjct: 105 EALLLAMAPHRVRFHFVKGHTGHPENERVDREARR 139


>d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein
           L2 {Thermus thermophilus [TaxId: 274]}
          Length = 125

 Score = 24.0 bits (52), Expect = 9.3
 Identities = 13/51 (25%), Positives = 18/51 (35%)

Query: 104 KLKSIKPLITNWDTSNQENRTKEITLTRMRIGHTRLTHGFIFTKTDPPNCP 154
           K +  K L+     +   N    IT+     GH RL     F + D    P
Sbjct: 25  KTEPEKSLVKPLKKTGGRNNQGRITVRFRGGGHKRLYRIIDFKRWDKVGIP 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.433 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 771,633
Number of extensions: 33873
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 5
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)