BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16115
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MTG|A Chain A, Crystal Structure Of Human S-Adenosyl Homocysteine
Hydrolase Protein
pdb|3MTG|B Chain B, Crystal Structure Of Human S-Adenosyl Homocysteine
Hydrolase Protein
Length = 444
Score = 245 bits (626), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 110/130 (84%), Positives = 122/130 (93%)
Query: 99 LKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL 158
LKR+TDVMFGGKQVV+CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKL
Sbjct: 215 LKRTTDVMFGGKQVVVCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKL 274
Query: 159 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR 218
NEVIR VD+V+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VR
Sbjct: 275 NEVIRQVDVVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVR 334
Query: 219 SQVDHVIWPD 228
SQVDHVIWPD
Sbjct: 335 SQVDHVIWPD 344
Score = 130 bits (328), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 58/67 (86%), Positives = 64/67 (95%)
Query: 31 QALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG 90
QALALIEL+NAP GRYK DVYLLPKKMDEYVASLHLP+FDAHLTEL+D+QAKY+GLNK G
Sbjct: 376 QALALIELYNAPEGRYKQDVYLLPKKMDEYVASLHLPSFDAHLTELADDQAKYLGLNKNG 435
Query: 91 PFKPSYY 97
PFKP+YY
Sbjct: 436 PFKPNYY 442
>pdb|3GVP|A Chain A, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|B Chain B, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|C Chain C, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|D Chain D, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
Length = 435
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 107/131 (81%), Positives = 122/131 (93%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
LKR+TD+MFGGKQVV+CGYGEVGKGCC +LK +G ++Y+TEIDPICALQACMDGF +VK
Sbjct: 209 GLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVK 268
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
LNEVIR VDIV+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+V
Sbjct: 269 LNEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERV 328
Query: 218 RSQVDHVIWPD 228
RSQVDHVIWPD
Sbjct: 329 RSQVDHVIWPD 339
Score = 127 bits (320), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 62/65 (95%)
Query: 31 QALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG 90
QALALIEL+NAP GRYK DVYLLPKKMDEYVASLHLPTFDAHLTEL+DEQAKY+GLNK G
Sbjct: 371 QALALIELYNAPEGRYKQDVYLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNG 430
Query: 91 PFKPS 95
PFKP+
Sbjct: 431 PFKPN 435
>pdb|3D64|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei
pdb|3D64|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei
pdb|3GLQ|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei In Complex With 9-Beta-D-
Arabino-Furansyl-Adenine
pdb|3GLQ|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei In Complex With 9-Beta-D-
Arabino-Furansyl-Adenine
Length = 494
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 70/131 (53%), Positives = 94/131 (71%), Gaps = 2/131 (1%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
+KR+TDVM GK V+ GYG+VGKGC QSL+GLG +++TEIDPICALQA M+G+ VV
Sbjct: 266 GIKRATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVT 325
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
+ DI VTATGN +V+ +HM M++ +VCN+GH ++EIDV S R WE +
Sbjct: 326 MEYAADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTR--QYQWENI 383
Query: 218 RSQVDHVIWPD 228
+ QVDH+I+PD
Sbjct: 384 KPQVDHIIFPD 394
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 19 PVCIRSNPLIIPQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSD 78
P + SN Q LA IELF G Y + VY+LPK +DE VA LHL A L+ELSD
Sbjct: 416 PSFVMSNSFT-NQTLAQIELFT-RGGEYANKVYVLPKHLDEKVARLHLARIGAQLSELSD 473
Query: 79 EQAKYMGLNKAGPFKPSYY 97
+QA Y+G++KAGPFKP +Y
Sbjct: 474 DQAAYIGVSKAGPFKPDHY 492
>pdb|3N58|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|C Chain C, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|D Chain D, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
Length = 464
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/142 (53%), Positives = 98/142 (69%), Gaps = 2/142 (1%)
Query: 87 NKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL 146
NK G + ++R TDVM GK V+CGYG+VGKG QSL G G + +TE+DPICAL
Sbjct: 225 NKYGCKESLVDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICAL 284
Query: 147 QACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNS 206
QA MDGF VV L++ T DIVVT TGNK+V+T +HM KMK+ C+V N+GH + EI V +
Sbjct: 285 QAAMDGFEVVTLDDAASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAA 344
Query: 207 LRTPDLTWEKVRSQVDHVIWPD 228
LR +L W V+ QVD + +PD
Sbjct: 345 LR--NLKWTNVKPQVDLIEFPD 364
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 31 QALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG 90
Q L IELF YK++VY+LPK +DE VA LHL A LT LS+EQA Y+G+ G
Sbjct: 397 QVLGQIELFTRTDA-YKNEVYVLPKHLDEKVARLHLDKLGAKLTVLSEEQAAYIGVTPQG 455
Query: 91 PFKPSYY 97
PFK +Y
Sbjct: 456 PFKSEHY 462
>pdb|1V8B|A Chain A, Crystal Structure Of A Hydrolase
pdb|1V8B|B Chain B, Crystal Structure Of A Hydrolase
pdb|1V8B|C Chain C, Crystal Structure Of A Hydrolase
pdb|1V8B|D Chain D, Crystal Structure Of A Hydrolase
Length = 479
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 92/134 (68%), Gaps = 1/134 (0%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
L R+TD + GK VV+CGYG+VGKGC S+KGLG +YITEIDPICA+QA M+GF+VV
Sbjct: 246 GLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVT 305
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL-RTPDLTWEK 216
L+E++ D +T TGN +V+ EH+ KMKN VV N+GH + EI VN L + E
Sbjct: 306 LDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIEN 365
Query: 217 VRSQVDHVIWPDVN 230
V+ QVD + P+ N
Sbjct: 366 VKPQVDRITLPNGN 379
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 31 QALALIELF-NAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKA 89
Q A ++L+ N +Y++ VYLLPK +DE VA HL +A LTEL D Q +++G+NK+
Sbjct: 410 QTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKS 469
Query: 90 GPFKPSYY 97
GPFK + Y
Sbjct: 470 GPFKSNEY 477
>pdb|3OND|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenosine
pdb|3OND|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenosine
pdb|3ONE|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenine
pdb|3ONE|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenine
pdb|3ONF|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Cordycepin
pdb|3ONF|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Cordycepin
Length = 488
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 89/134 (66%), Gaps = 1/134 (0%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
L R+TDVM GK V+ GYG+VGKGC +LK G + +TEIDPICALQA M+G V+
Sbjct: 254 GLMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLT 313
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT-PDLTWEK 216
L +V+ DI VT TGNK+++ +HM KMKN +VCN+GH + EID+ L T P +
Sbjct: 314 LEDVVSEADIFVTTTGNKDIIMLDHMKKMKNNAIVCNIGHFDNEIDMLGLETHPGVKRIT 373
Query: 217 VRSQVDHVIWPDVN 230
++ Q D ++P+ N
Sbjct: 374 IKPQTDRWVFPETN 387
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Query: 3 EINTVQWTLGFKRRVSPVCIRSNPLII------PQALALIELFNA-PAGRYKSDVYLLPK 55
E NT L R ++ C +P + Q +A +EL+N +G+Y+ VY+LPK
Sbjct: 385 ETNTGIIILAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSGKYEKKVYVLPK 444
Query: 56 KMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 97
+DE VA+LHL A LT+LS +QA Y+ + GP+KP +Y
Sbjct: 445 HLDEKVAALHLEKLGAKLTKLSKDQADYISVPVEGPYKPFHY 486
>pdb|3DHY|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|B Chain B, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|C Chain C, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|D Chain D, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|2ZIZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZJ0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
Length = 495
Score = 137 bits (345), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 89/136 (65%)
Query: 87 NKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL 146
NK G + R TD + GGK+V++CGYG+VGKGC +++KG G + +TEIDPI AL
Sbjct: 253 NKYGTRHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINAL 312
Query: 147 QACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNS 206
QA M+GF VV + E I DIVVTATGNK+++ EH+ MK+ ++ N+GH + EID+
Sbjct: 313 QAMMEGFDVVTVEEAIGDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAG 372
Query: 207 LRTPDLTWEKVRSQVD 222
L T V+ QVD
Sbjct: 373 LERSGATRVNVKPQVD 388
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 19 PVCIRSNPLIIPQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSD 78
P + SN Q +A IEL+ Y ++VY LPK +DE VA +H+ HLT+L+
Sbjct: 417 PSFVMSNSFA-NQTIAQIELWT-KNDEYDNEVYRLPKHLDEKVARIHVEALGGHLTKLTK 474
Query: 79 EQAKYMGLNKAGPFKPSYY 97
EQA+Y+G++ GP+KP +Y
Sbjct: 475 EQAEYLGVDVEGPYKPDHY 493
>pdb|3CE6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
Length = 494
Score = 137 bits (345), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 89/136 (65%)
Query: 87 NKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL 146
NK G + R TD + GGK+V++CGYG+VGKGC +++KG G + +TEIDPI AL
Sbjct: 252 NKYGTRHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINAL 311
Query: 147 QACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNS 206
QA M+GF VV + E I DIVVTATGNK+++ EH+ MK+ ++ N+GH + EID+
Sbjct: 312 QAMMEGFDVVTVEEAIGDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAG 371
Query: 207 LRTPDLTWEKVRSQVD 222
L T V+ QVD
Sbjct: 372 LERSGATRVNVKPQVD 387
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 19 PVCIRSNPLIIPQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSD 78
P + SN Q +A IEL+ Y ++VY LPK +DE VA +H+ HLT+L+
Sbjct: 416 PSFVMSNSFA-NQTIAQIELWT-KNDEYDNEVYRLPKHLDEKVARIHVEALGGHLTKLTK 473
Query: 79 EQAKYMGLNKAGPFKPSYY 97
EQA+Y+G++ GP+KP +Y
Sbjct: 474 EQAEYLGVDVEGPYKPDHY 492
>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|B Chain B, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|C Chain C, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|D Chain D, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
Length = 436
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 84/126 (66%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
+KR+TDVM GK +CGYG+VGKGC +L+G G + +TE+DPI ALQA M+G+ V+
Sbjct: 200 GIKRATDVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLL 259
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
+ +V+ I VT TGN +++T EH +M++ +VCN+GH +TEI V L+ +V
Sbjct: 260 VEDVVEEAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEV 319
Query: 218 RSQVDH 223
+ QVD
Sbjct: 320 KPQVDR 325
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 6/84 (7%)
Query: 19 PVCIRSNPLIIPQALALIELF-NAPAGRY----KSDVYLLPKKMDEYVASLHLPTFDAHL 73
P + SN Q LA IEL+ N G+Y K+ VY LPKK+DE VA+LHL A L
Sbjct: 352 PSFVMSNSFC-NQVLAQIELWTNRDTGKYPRGAKAQVYFLPKKLDEKVAALHLGKLGAKL 410
Query: 74 TELSDEQAKYMGLNKAGPFKPSYY 97
T+L+ +QA+Y+ GPFKP +Y
Sbjct: 411 TKLTPKQAEYINCPVDGPFKPDHY 434
>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|B Chain B, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|C Chain C, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|D Chain D, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1K0U|A Chain A, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|B Chain B, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|C Chain C, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|D Chain D, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|E Chain E, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|F Chain F, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|G Chain G, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|H Chain H, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1KY4|A Chain A, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|B Chain B, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|C Chain C, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|D Chain D, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|2H5L|A Chain A, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|B Chain B, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|C Chain C, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|D Chain D, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|E Chain E, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|F Chain F, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|G Chain G, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|H Chain H, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
Length = 431
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 90/147 (61%), Gaps = 5/147 (3%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
+KR+TDVM GK V+ GYG+VGKGC Q+L+G G + ITEIDPI ALQA M+G+ V
Sbjct: 201 GIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTT 260
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
++E + +I VT TG +++ H ++MK+ +VCN+GH + EIDV L + +
Sbjct: 261 MDEACKEGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNI 320
Query: 218 RSQVDHVIWPDVNLKNNTVIDLFRKPK 244
+ QVD + LKN I L + +
Sbjct: 321 KPQVDRYL-----LKNGHRIILLAEGR 342
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 19 PVCIRSNPLIIPQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSD 78
P + SN Q +A IEL+ P +Y V+ LPKK+DE VA HL + LT+L++
Sbjct: 353 PSFVMSNSFT-NQVMAQIELWTHP-DKYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTE 410
Query: 79 EQAKYMGLNKAGPFKPSYY 97
+QA+Y+G+ GPFKP +Y
Sbjct: 411 KQAQYLGMPINGPFKPDHY 429
>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|B Chain B, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|C Chain C, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|D Chain D, K185n Mutated S-adenosylhomocysteine Hydrolase
Length = 431
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 90/147 (61%), Gaps = 5/147 (3%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
+KR+TDVM GK V+ GYG+VGKGC Q+L+G G + ITEIDPI ALQA M+G+ V
Sbjct: 201 GIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTT 260
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
++E + +I VT TG +++ H ++MK+ +VCN+GH + EIDV L + +
Sbjct: 261 MDEACKEGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNI 320
Query: 218 RSQVDHVIWPDVNLKNNTVIDLFRKPK 244
+ QVD + LKN I L + +
Sbjct: 321 KPQVDRYL-----LKNGHRIILLAEGR 342
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 19 PVCIRSNPLIIPQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSD 78
P + SN Q +A IEL+ P +Y V+ LPKK+DE VA HL + LT+L++
Sbjct: 353 PSFVMSNSFT-NQVMAQIELWTHP-DKYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTE 410
Query: 79 EQAKYMGLNKAGPFKPSYY 97
+QA+Y+G+ GPFKP +Y
Sbjct: 411 KQAQYLGMPINGPFKPDHY 429
>pdb|3NJ4|A Chain A, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|B Chain B, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|C Chain C, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|D Chain D, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
Length = 435
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 82/125 (65%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
+KR+TDVM GK V+ GYG+VGKGC Q+L+G G + ITEIDPI ALQA M+G+ V
Sbjct: 205 GIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTT 264
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
++E + +I VT TG +++ H ++MK+ +VCN+GH + EIDV L + +
Sbjct: 265 MDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNI 324
Query: 218 RSQVD 222
+ QVD
Sbjct: 325 KPQVD 329
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 19 PVCIRSNPLIIPQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSD 78
P + SN Q +A IEL+ P +Y V+ LPKK+DE VA HL + LT+L++
Sbjct: 357 PSFVMSNSFT-NQVMAQIELWTHP-DKYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTE 414
Query: 79 EQAKYMGLNKAGPFKPSYY 97
+QA+Y+G++ GPFKP +Y
Sbjct: 415 KQAQYLGMSCDGPFKPDHY 433
>pdb|1LI4|A Chain A, Human S-Adenosylhomocysteine Hydrolase Complexed With
Neplanocin
Length = 432
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 82/125 (65%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
+KR+TDVM GK V+ GYG+VGKGC Q+L+G G + ITEIDPI ALQA M+G+ V
Sbjct: 202 GIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTT 261
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
++E + +I VT TG +++ H ++MK+ +VCN+GH + EIDV L + +
Sbjct: 262 MDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNI 321
Query: 218 RSQVD 222
+ QVD
Sbjct: 322 KPQVD 326
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 19 PVCIRSNPLIIPQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSD 78
P + SN Q +A IEL+ P +Y V+ LPKK+DE VA HL + LT+L++
Sbjct: 354 PSFVMSNSFT-NQVMAQIELWTHP-DKYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTE 411
Query: 79 EQAKYMGLNKAGPFKPSYY 97
+QA+Y+G++ GPFKP +Y
Sbjct: 412 KQAQYLGMSCDGPFKPDHY 430
>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|B Chain B, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|C Chain C, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|D Chain D, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1KY5|A Chain A, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|B Chain B, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|C Chain C, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|D Chain D, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
Length = 431
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 90/147 (61%), Gaps = 5/147 (3%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
+KR+TDVM GK V+ GYG+VGKGC Q+L+G G + ITEI+PI ALQA M+G+ V
Sbjct: 201 GIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIEPINALQAAMEGYEVTT 260
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
++E + +I VT TG +++ H ++MK+ +VCN+GH + EIDV L + +
Sbjct: 261 MDEACKEGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNI 320
Query: 218 RSQVDHVIWPDVNLKNNTVIDLFRKPK 244
+ QVD + LKN I L + +
Sbjct: 321 KPQVDRYL-----LKNGHRIILLAEGR 342
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 19 PVCIRSNPLIIPQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSD 78
P + SN Q +A IEL+ P +Y V+ LPKK+DE VA HL + LT+L++
Sbjct: 353 PSFVMSNSFT-NQVMAQIELWTHP-DKYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTE 410
Query: 79 EQAKYMGLNKAGPFKPSYY 97
+QA+Y+G+ GPFKP +Y
Sbjct: 411 KQAQYLGMPINGPFKPDHY 429
>pdb|3G1U|A Chain A, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|B Chain B, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|C Chain C, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|D Chain D, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
Length = 437
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 80/125 (64%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
+KR+TDVM GK +CGYG+VGKGC +L+ G + +TE+DPI ALQA M+G+ V
Sbjct: 201 GIKRATDVMIAGKTCCVCGYGDVGKGCAAALRAFGARVVVTEVDPINALQASMEGYQVAL 260
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
+ +V+ I VT TGN +++T +H M++ +VCN+GH +TEI V L ++
Sbjct: 261 VEDVMADAHIFVTTTGNDDIITSDHFPHMRDDAIVCNIGHFDTEIQVGWLEANAKEHVEI 320
Query: 218 RSQVD 222
+ QVD
Sbjct: 321 KPQVD 325
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Query: 19 PVCIRSNPLIIPQALALIELF-NAPAGRY----KSDVYLLPKKMDEYVASLHLPTFDAHL 73
P + SN Q LA IEL+ N G+Y K+ V+ LPK +DE VA+LHL A L
Sbjct: 353 PSFVMSNSFT-NQVLAQIELWSNRDNGKYPRGDKAGVFFLPKALDEKVAALHLAHVGAKL 411
Query: 74 TELSDEQAKYMGLNKAGPFKPSYY 97
T+L+ +QA+Y+ GPFKP +Y
Sbjct: 412 TKLTPKQAEYINCPVNGPFKPDHY 435
>pdb|1A7A|A Chain A, Structure Of Human Placental S-adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
pdb|1A7A|B Chain B, Structure Of Human Placental S-adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
Length = 432
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 78/125 (62%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
+KR+TDV GK V+ GYG+VGKGC Q+L+G G + ITEIDPI ALQA +G+ V
Sbjct: 202 GIKRATDVXIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAXEGYEVTT 261
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
+E + +I VT TG +++ H ++ K+ +VCN+GH + EIDV L + +
Sbjct: 262 XDEACQEGNIFVTTTGCIDIILGRHFEQXKDDAIVCNIGHFDVEIDVKWLNENAVEKVNI 321
Query: 218 RSQVD 222
+ QVD
Sbjct: 322 KPQVD 326
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 19 PVCIRSNPLIIPQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSD 78
P + SN Q A IEL+ P +Y V+ LPKK+DE VA HL + LT+L++
Sbjct: 354 PSFVXSNSFT-NQVXAQIELWTHP-DKYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTE 411
Query: 79 EQAKYMGLNKAGPFKPSYY 97
+QA+Y+G + GPFKP +Y
Sbjct: 412 KQAQYLGXSCDGPFKPDHY 430
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 112 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA 171
V + G G +G+ Q G+G + ++ I ++ D + V L+EV+ DI+
Sbjct: 149 VGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIE---DYCTQVSLDEVLEKSDIITIH 205
Query: 172 T----GNKNVVTREHMDKMKNGCVVCN 194
N VVTR+ + KMK+G ++ N
Sbjct: 206 APYIKENGAVVTRDFLKKMKDGAILVN 232
>pdb|3VPX|A Chain A, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila.
pdb|3VPX|B Chain B, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila
Length = 364
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 96 YYSLKRSTDVMFG-----GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM 150
YY +K + FG GK V + G G V C+ L G + IT+I+ A+Q +
Sbjct: 155 YYGMKAAAKEAFGDDSLAGKTVAVQGVGNVAYALCEYLHEEGAKLIITDINE-EAVQRAV 213
Query: 151 DGF--SVVKLNEV 161
D F + V +NE+
Sbjct: 214 DAFGATAVGINEI 226
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTVDI 167
GK + G G +GK Q LK GC ++Y + L+ V LNE++ D+
Sbjct: 164 GKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDV 223
Query: 168 VVT----ATGNKNVVTREHMDKMKNGCVVCN 194
+V + + +E + K+K G ++ N
Sbjct: 224 IVINMPLTEKTRGMFNKELIGKLKKGVLIVN 254
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTVDI 167
GK + G G +GK Q LK GC ++Y + L+ V LNE++ D+
Sbjct: 170 GKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDV 229
Query: 168 VVT----ATGNKNVVTREHMDKMKNGCVVCN 194
+V + + +E + K+K G ++ N
Sbjct: 230 IVINMPLTEKTRGMFNKELIGKLKKGVLIVN 260
>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site.
pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site
Length = 879
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 137 ITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMD 184
+T+++ + + ++ VKLN IR VD++ +++ RE++D
Sbjct: 551 LTQLEKYVEDKEFLKKWNQVKLNNKIRLVDLIKKENDGVDIINREYLD 598
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIV 168
GK++ + GYG +G + LG +Y +I+ L + V L++++ D+V
Sbjct: 151 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLG---NATQVQHLSDLLNMSDVV 207
Query: 169 VTAT----GNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL 207
KN++ + + MK G ++ N T +D+ +L
Sbjct: 208 SLHVPENPSTKNMMGAKEISLMKPGSLLINASRG-TVVDIPAL 249
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIV 168
GK++ + GYG +G + LG +Y +I+ L + V L++++ D+V
Sbjct: 151 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLG---NATQVQHLSDLLNMSDVV 207
Query: 169 VTAT----GNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL 207
KN++ + + MK G ++ N T +D+ +L
Sbjct: 208 SLHVPENPSTKNMMGAKEISLMKPGSLLINASRG-TVVDIPAL 249
>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
At5g01750
pdb|2Q4M|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
From Arabidopsis Thaliana At5g01750
Length = 217
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 97 YSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKG----LGCVIYITEIDPICA 145
Y++KRS+ + K V G+ + K C +KG CV+Y E D I A
Sbjct: 117 YTVKRSSXLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVA 169
>pdb|2VNS|A Chain A, Crystal Structure Of The Membrane Proximal
Oxidoreductase Domain Of Human Steap3, The Dominant
Ferric Reductase Of The Erythroid Transferrin Cycle
pdb|2VNS|B Chain B, Crystal Structure Of The Membrane Proximal
Oxidoreductase Domain Of Human Steap3, The Dominant
Ferric Reductase Of The Erythroid Transferrin Cycle
pdb|2VQ3|A Chain A, Crystal Structure Of The Membrane Proximal
Oxidoreductase Domain Of Human Steap3, The Dominant
Ferric Reductase Of The Erythroid Transferrin Cycle
pdb|2VQ3|B Chain B, Crystal Structure Of The Membrane Proximal
Oxidoreductase Domain Of Human Steap3, The Dominant
Ferric Reductase Of The Erythroid Transferrin Cycle
Length = 215
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 53 LPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPS 95
+P++MD+ + SLHL D+ L ++ DE K +G+ +G F S
Sbjct: 1 MPEEMDKPLISLHLVDSDSSLAKVPDEAPK-VGILGSGDFARS 42
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIV 168
GK++ + GYG +G + LG +Y +I+ L + V L++++ D+V
Sbjct: 150 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLG---NATQVQHLSDLLNMSDVV 206
Query: 169 VTAT----GNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL 207
KN++ + + MK G ++ N T +D+ +L
Sbjct: 207 SLHVPENPSTKNMMGAKEISLMKPGSLLINASRG-TVVDIPAL 248
>pdb|1UIM|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIM|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIN|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1UIN|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1V7C|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|C Chain C, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|D Chain D, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|3AEX|A Chain A, Catalytic Intermediate Analogue Of Threonine Synthase From
Thermus Thermophilus Hb8
pdb|3AEX|B Chain B, Catalytic Intermediate Analogue Of Threonine Synthase From
Thermus Thermophilus Hb8
pdb|3AEY|A Chain A, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
pdb|3AEY|B Chain B, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
Length = 351
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 81 AKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLC 115
AKY GLN G FK +L S V GG Q V C
Sbjct: 49 AKYEGLNPTGSFKDRGMTLAVSKAVE-GGAQAVAC 82
>pdb|3C6Q|B Chain B, Apo And Ligand-Bound Form Of A Thermophilic GlucoseXYLOSE
BINDING Protein
pdb|3C6Q|A Chain A, Apo And Ligand-Bound Form Of A Thermophilic GlucoseXYLOSE
BINDING Protein
pdb|3C6Q|C Chain C, Apo And Ligand-Bound Form Of A Thermophilic GlucoseXYLOSE
BINDING Protein
pdb|3C6Q|D Chain D, Apo And Ligand-Bound Form Of A Thermophilic GlucoseXYLOSE
BINDING Protein
Length = 311
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 106 MFGGKQVVLCGYGEV-GKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNE 160
+ GGK V+ G G + Q ++G I +EI+ + L C DG V L E
Sbjct: 119 LLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDILNDCEDGARAVSLAE 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,860,339
Number of Sequences: 62578
Number of extensions: 323915
Number of successful extensions: 851
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 50
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)