Query psy16115
Match_columns 258
No_of_seqs 345 out of 2088
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 21:15:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1052 LdhA Lactate dehydroge 100.0 3E-28 6.5E-33 219.5 12.2 199 44-250 86-294 (324)
2 COG0111 SerA Phosphoglycerate 99.9 2E-27 4.4E-32 214.2 13.0 191 47-250 89-288 (324)
3 PRK08410 2-hydroxyacid dehydro 99.9 1.9E-26 4.2E-31 207.5 12.1 194 45-250 84-289 (311)
4 PRK15409 bifunctional glyoxyla 99.9 7.2E-26 1.6E-30 204.6 12.7 196 45-249 87-290 (323)
5 PRK06932 glycerate dehydrogena 99.9 2.2E-25 4.7E-30 200.9 12.4 165 46-219 87-259 (314)
6 PRK06487 glycerate dehydrogena 99.9 2.9E-25 6.4E-30 200.3 12.3 190 46-250 88-290 (317)
7 PRK13243 glyoxylate reductase; 99.9 2E-24 4.2E-29 196.2 13.1 198 45-250 88-294 (333)
8 PLN03139 formate dehydrogenase 99.9 2.6E-24 5.7E-29 197.8 12.3 166 46-218 143-316 (386)
9 PLN02306 hydroxypyruvate reduc 99.9 5.5E-24 1.2E-28 196.1 12.9 197 45-250 107-326 (386)
10 PRK07574 formate dehydrogenase 99.9 4E-24 8.7E-29 196.7 11.0 165 46-217 136-308 (385)
11 PRK11790 D-3-phosphoglycerate 99.9 8.1E-24 1.7E-28 196.9 13.1 190 45-250 96-298 (409)
12 KOG0068|consensus 99.9 2.5E-24 5.5E-29 189.7 8.8 168 44-221 90-264 (406)
13 PLN02928 oxidoreductase family 99.9 1.7E-23 3.6E-28 191.0 12.9 191 46-250 104-317 (347)
14 KOG0069|consensus 99.9 1.2E-23 2.7E-28 188.3 11.3 194 44-247 104-304 (336)
15 PF02826 2-Hacid_dh_C: D-isome 99.9 1.8E-23 3.9E-28 174.0 10.8 118 104-221 31-155 (178)
16 TIGR01327 PGDH D-3-phosphoglyc 99.9 7.4E-23 1.6E-27 196.1 15.2 192 46-250 84-283 (525)
17 PRK13581 D-3-phosphoglycerate 99.9 9E-23 1.9E-27 195.5 13.8 192 46-250 86-284 (526)
18 PTZ00075 Adenosylhomocysteinas 99.9 2.1E-22 4.5E-27 188.0 15.6 172 44-243 212-384 (476)
19 PF00670 AdoHcyase_NAD: S-aden 99.9 4.8E-23 1E-27 167.0 9.3 148 92-244 6-153 (162)
20 PRK15438 erythronate-4-phospha 99.9 6.3E-22 1.4E-26 181.5 12.5 170 46-250 80-260 (378)
21 PRK15469 ghrA bifunctional gly 99.9 5.5E-22 1.2E-26 178.5 10.0 160 47-218 84-251 (312)
22 PRK06436 glycerate dehydrogena 99.9 2.7E-21 5.9E-26 173.2 13.1 154 47-218 72-234 (303)
23 PRK00257 erythronate-4-phospha 99.9 2.5E-21 5.4E-26 178.0 12.9 171 46-251 80-261 (381)
24 PRK12480 D-lactate dehydrogena 99.9 2.6E-21 5.6E-26 175.5 12.5 161 46-218 91-259 (330)
25 cd00401 AdoHcyase S-adenosyl-L 99.9 1.7E-21 3.7E-26 180.4 10.9 175 75-254 168-343 (413)
26 COG0499 SAM1 S-adenosylhomocys 99.9 4.3E-21 9.3E-26 170.8 11.3 154 75-228 175-328 (420)
27 PLN02494 adenosylhomocysteinas 99.8 3.5E-20 7.6E-25 172.8 15.2 154 75-228 220-374 (477)
28 PRK08605 D-lactate dehydrogena 99.8 1.8E-20 3.9E-25 170.2 12.8 163 45-218 90-261 (332)
29 TIGR00936 ahcY adenosylhomocys 99.8 5E-20 1.1E-24 170.2 12.3 154 76-229 162-315 (406)
30 PRK05476 S-adenosyl-L-homocyst 99.8 1.6E-19 3.6E-24 167.7 12.5 136 93-228 196-331 (425)
31 KOG1370|consensus 99.8 1.1E-18 2.3E-23 152.5 12.2 145 94-243 199-343 (434)
32 KOG0024|consensus 99.7 1.3E-17 2.7E-22 147.3 8.0 175 47-257 134-328 (354)
33 PRK14189 bifunctional 5,10-met 99.5 1.7E-13 3.7E-18 121.2 10.3 192 30-242 76-273 (285)
34 PRK14194 bifunctional 5,10-met 99.5 2.5E-13 5.3E-18 120.9 10.0 196 30-243 77-278 (301)
35 PRK14175 bifunctional 5,10-met 99.4 4.3E-13 9.4E-18 118.8 10.2 191 30-242 76-273 (286)
36 COG1063 Tdh Threonine dehydrog 99.4 1.8E-13 3.9E-18 125.3 8.1 140 108-257 168-326 (350)
37 TIGR02853 spore_dpaA dipicolin 99.4 1.1E-12 2.5E-17 116.9 11.3 108 105-213 147-257 (287)
38 PRK14191 bifunctional 5,10-met 99.4 1.5E-12 3.2E-17 115.2 11.6 196 30-246 75-276 (285)
39 PRK14177 bifunctional 5,10-met 99.4 1.3E-12 2.8E-17 115.4 10.9 189 30-243 77-271 (284)
40 PRK14170 bifunctional 5,10-met 99.4 1.1E-12 2.4E-17 115.7 10.0 193 30-243 75-273 (284)
41 PRK14190 bifunctional 5,10-met 99.4 1.8E-12 3.9E-17 114.6 11.2 192 30-242 76-273 (284)
42 PRK14172 bifunctional 5,10-met 99.4 1.4E-12 3.1E-17 114.8 10.2 190 30-241 76-271 (278)
43 COG0190 FolD 5,10-methylene-te 99.4 8.1E-13 1.8E-17 115.6 8.1 198 30-248 74-277 (283)
44 PRK14176 bifunctional 5,10-met 99.4 2.1E-12 4.5E-17 114.2 10.5 190 30-241 82-277 (287)
45 PLN02516 methylenetetrahydrofo 99.4 2.4E-12 5.3E-17 114.4 10.9 196 30-243 83-289 (299)
46 PRK14186 bifunctional 5,10-met 99.4 3E-12 6.5E-17 113.8 10.8 197 30-244 76-279 (297)
47 TIGR03366 HpnZ_proposed putati 99.4 8E-13 1.7E-17 117.0 7.1 140 108-257 120-277 (280)
48 PRK14166 bifunctional 5,10-met 99.4 2.9E-12 6.4E-17 113.1 10.5 192 30-242 74-272 (282)
49 PRK14182 bifunctional 5,10-met 99.4 3E-12 6.5E-17 112.9 10.5 192 30-242 74-272 (282)
50 PRK09880 L-idonate 5-dehydroge 99.4 1E-12 2.2E-17 119.5 7.2 140 108-257 169-320 (343)
51 PRK14184 bifunctional 5,10-met 99.4 4.5E-12 9.8E-17 112.1 10.6 191 30-242 75-275 (286)
52 PRK14185 bifunctional 5,10-met 99.4 4.3E-12 9.4E-17 112.5 10.4 197 30-244 75-284 (293)
53 PRK10792 bifunctional 5,10-met 99.3 1.7E-11 3.7E-16 108.4 13.7 191 30-241 77-273 (285)
54 PRK14187 bifunctional 5,10-met 99.3 5.1E-12 1.1E-16 112.1 10.4 199 30-246 76-282 (294)
55 PRK14169 bifunctional 5,10-met 99.3 1.5E-11 3.3E-16 108.6 13.3 192 30-242 74-271 (282)
56 PRK14173 bifunctional 5,10-met 99.3 1.8E-11 4E-16 108.3 13.7 195 30-243 73-274 (287)
57 PRK14178 bifunctional 5,10-met 99.3 5.9E-12 1.3E-16 111.0 10.1 192 30-243 70-267 (279)
58 PRK14167 bifunctional 5,10-met 99.3 5.8E-12 1.3E-16 112.0 10.1 197 30-244 75-283 (297)
59 PRK14179 bifunctional 5,10-met 99.3 1.8E-11 4E-16 108.2 13.1 193 30-243 76-274 (284)
60 PRK14183 bifunctional 5,10-met 99.3 2E-11 4.4E-16 107.6 13.3 192 30-242 75-272 (281)
61 PRK14171 bifunctional 5,10-met 99.3 1.7E-11 3.6E-16 108.5 12.4 193 30-243 76-275 (288)
62 PRK14193 bifunctional 5,10-met 99.3 2.8E-11 6.1E-16 107.0 13.5 191 30-242 76-274 (284)
63 PRK13403 ketol-acid reductoiso 99.3 5.3E-12 1.1E-16 113.1 9.0 90 106-195 13-105 (335)
64 PRK14168 bifunctional 5,10-met 99.3 8.6E-12 1.9E-16 110.9 10.0 195 30-242 77-286 (297)
65 PRK14188 bifunctional 5,10-met 99.3 2.9E-11 6.3E-16 107.8 13.3 198 30-246 76-284 (296)
66 PRK14180 bifunctional 5,10-met 99.3 3.3E-11 7.3E-16 106.4 13.5 191 30-242 75-272 (282)
67 PLN02616 tetrahydrofolate dehy 99.3 2.7E-11 5.8E-16 109.7 13.2 195 30-242 147-352 (364)
68 PLN02897 tetrahydrofolate dehy 99.3 3.4E-11 7.3E-16 108.6 13.4 195 30-242 130-335 (345)
69 KOG0067|consensus 99.3 4.1E-12 8.9E-17 114.0 7.0 196 45-253 116-321 (435)
70 PRK14181 bifunctional 5,10-met 99.3 5.1E-11 1.1E-15 105.4 13.4 195 30-242 70-277 (287)
71 PRK09424 pntA NAD(P) transhydr 99.3 1.1E-11 2.4E-16 117.9 8.8 138 107-252 163-339 (509)
72 PRK14174 bifunctional 5,10-met 99.3 2.6E-11 5.6E-16 107.9 10.4 196 30-243 75-285 (295)
73 cd08237 ribitol-5-phosphate_DH 99.2 1.9E-11 4.2E-16 111.2 8.1 139 108-257 163-314 (341)
74 PRK08306 dipicolinate synthase 99.2 8.6E-11 1.9E-15 105.3 12.1 111 104-215 147-260 (296)
75 COG1064 AdhP Zn-dependent alco 99.2 1E-10 2.2E-15 105.6 9.0 146 47-219 130-286 (339)
76 cd08281 liver_ADH_like1 Zinc-d 99.1 3.4E-11 7.4E-16 110.7 4.8 140 108-257 191-350 (371)
77 PRK14192 bifunctional 5,10-met 99.1 1.8E-10 3.9E-15 102.5 8.9 191 30-242 77-273 (283)
78 cd01080 NAD_bind_m-THF_DH_Cycl 99.1 1.3E-10 2.8E-15 95.8 7.1 81 105-201 40-122 (168)
79 PF03446 NAD_binding_2: NAD bi 99.1 5.1E-10 1.1E-14 91.7 9.5 135 110-249 2-145 (163)
80 cd08239 THR_DH_like L-threonin 99.1 1.2E-10 2.6E-15 105.3 4.7 140 108-257 163-317 (339)
81 TIGR01202 bchC 2-desacetyl-2-h 99.1 1.5E-10 3.3E-15 103.9 4.8 138 108-257 144-286 (308)
82 COG2084 MmsB 3-hydroxyisobutyr 99.0 3.1E-09 6.8E-14 94.2 12.0 135 110-249 1-146 (286)
83 cd01079 NAD_bind_m-THF_DH NAD 99.0 3.1E-09 6.6E-14 88.9 10.9 91 105-198 58-158 (197)
84 PLN02827 Alcohol dehydrogenase 99.0 1.3E-09 2.9E-14 100.6 9.2 140 108-257 193-354 (378)
85 TIGR03451 mycoS_dep_FDH mycoth 99.0 5.3E-10 1.1E-14 102.3 6.3 140 108-257 176-336 (358)
86 PF02882 THF_DHG_CYH_C: Tetrah 99.0 2.6E-09 5.7E-14 87.2 9.6 134 90-241 14-151 (160)
87 PLN02740 Alcohol dehydrogenase 99.0 7.6E-10 1.7E-14 102.2 6.7 139 108-257 198-359 (381)
88 TIGR02822 adh_fam_2 zinc-bindi 99.0 2.7E-10 5.8E-15 103.3 3.6 111 108-219 165-280 (329)
89 PF07991 IlvN: Acetohydroxy ac 99.0 2.2E-09 4.7E-14 87.1 7.7 89 107-195 2-94 (165)
90 TIGR00518 alaDH alanine dehydr 99.0 3.8E-09 8.3E-14 97.5 10.4 92 107-198 165-269 (370)
91 TIGR02818 adh_III_F_hyde S-(hy 99.0 6.5E-10 1.4E-14 102.2 5.2 139 108-257 185-346 (368)
92 COG1062 AdhC Zn-dependent alco 99.0 1.7E-09 3.7E-14 96.8 7.3 139 108-257 185-344 (366)
93 cd08230 glucose_DH Glucose deh 99.0 1.2E-09 2.7E-14 99.7 6.7 140 108-257 172-334 (355)
94 TIGR00561 pntA NAD(P) transhyd 98.9 4E-09 8.6E-14 100.4 10.1 92 107-198 162-286 (511)
95 TIGR03201 dearomat_had 6-hydro 98.9 7.9E-10 1.7E-14 100.8 5.2 139 108-257 166-326 (349)
96 PRK05479 ketol-acid reductoiso 98.9 6.5E-09 1.4E-13 94.1 11.0 132 107-240 15-151 (330)
97 PLN02178 cinnamyl-alcohol dehy 98.9 1.8E-09 3.9E-14 99.8 7.2 117 108-225 178-305 (375)
98 PF01488 Shikimate_DH: Shikima 98.9 3.9E-09 8.4E-14 83.9 8.1 104 106-209 9-123 (135)
99 COG0499 SAM1 S-adenosylhomocys 98.9 1.5E-09 3.2E-14 97.6 6.1 83 8-91 332-420 (420)
100 PRK10309 galactitol-1-phosphat 98.9 1.2E-09 2.6E-14 99.3 5.2 145 108-257 160-323 (347)
101 cd01075 NAD_bind_Leu_Phe_Val_D 98.9 1.2E-08 2.6E-13 86.5 9.5 108 104-213 23-134 (200)
102 TIGR01505 tartro_sem_red 2-hyd 98.9 1.1E-08 2.3E-13 91.3 9.8 104 111-214 1-114 (291)
103 PLN02586 probable cinnamyl alc 98.9 2.2E-09 4.8E-14 98.5 5.1 110 108-218 183-302 (360)
104 KOG1370|consensus 98.9 3.6E-09 7.8E-14 93.2 5.7 88 9-96 338-431 (434)
105 cd05212 NAD_bind_m-THF_DH_Cycl 98.9 2.2E-08 4.8E-13 80.0 9.8 81 103-199 22-103 (140)
106 PRK12490 6-phosphogluconate de 98.8 3.7E-08 7.9E-13 88.4 12.2 103 111-214 2-115 (299)
107 PRK15461 NADH-dependent gamma- 98.8 2.6E-08 5.6E-13 89.3 10.3 106 110-215 2-117 (296)
108 TIGR02819 fdhA_non_GSH formald 98.8 1.2E-08 2.5E-13 95.0 8.2 149 108-257 185-368 (393)
109 KOG0022|consensus 98.8 7.2E-09 1.6E-13 91.8 6.2 139 108-257 192-353 (375)
110 PRK11559 garR tartronate semia 98.8 3.1E-08 6.6E-13 88.5 10.4 90 110-199 3-99 (296)
111 cd08277 liver_alcohol_DH_like 98.8 1.1E-08 2.4E-13 93.9 7.7 139 108-257 184-344 (365)
112 PLN02712 arogenate dehydrogena 98.8 4.3E-08 9.2E-13 96.8 10.9 117 104-221 364-487 (667)
113 KOG0023|consensus 98.8 3.7E-08 7.9E-13 87.6 8.8 145 47-217 145-302 (360)
114 cd08301 alcohol_DH_plants Plan 98.8 2E-08 4.3E-13 92.2 7.5 139 108-257 187-348 (369)
115 cd08300 alcohol_DH_class_III c 98.7 1.9E-08 4.2E-13 92.3 7.2 139 108-257 186-347 (368)
116 cd08233 butanediol_DH_like (2R 98.7 1.9E-08 4.1E-13 91.4 6.6 140 108-257 172-327 (351)
117 TIGR01035 hemA glutamyl-tRNA r 98.7 5E-08 1.1E-12 91.5 9.3 100 106-205 177-287 (417)
118 PF01262 AlaDh_PNT_C: Alanine 98.7 1.2E-07 2.6E-12 78.0 10.5 91 107-197 18-140 (168)
119 PRK09599 6-phosphogluconate de 98.7 7.3E-08 1.6E-12 86.5 9.9 105 111-216 2-117 (301)
120 cd05213 NAD_bind_Glutamyl_tRNA 98.7 1.1E-07 2.4E-12 85.8 11.0 102 107-208 176-286 (311)
121 TIGR00465 ilvC ketol-acid redu 98.7 1.1E-07 2.4E-12 85.9 10.7 113 107-221 1-118 (314)
122 PRK00045 hemA glutamyl-tRNA re 98.7 9.1E-08 2E-12 89.9 10.5 102 106-207 179-292 (423)
123 PTZ00075 Adenosylhomocysteinas 98.7 2.5E-08 5.4E-13 94.0 6.6 88 8-96 378-473 (476)
124 PLN02514 cinnamyl-alcohol dehy 98.7 1.6E-08 3.5E-13 92.6 5.0 111 108-219 180-300 (357)
125 PLN02494 adenosylhomocysteinas 98.7 3E-08 6.5E-13 93.2 6.6 91 6-96 377-474 (477)
126 COG0373 HemA Glutamyl-tRNA red 98.7 1.2E-07 2.7E-12 87.9 10.2 104 106-209 175-288 (414)
127 PRK07066 3-hydroxybutyryl-CoA 98.7 2.2E-07 4.7E-12 84.2 11.5 127 110-245 8-160 (321)
128 PRK07417 arogenate dehydrogena 98.7 9.8E-08 2.1E-12 84.8 8.7 90 111-201 2-96 (279)
129 PLN00203 glutamyl-tRNA reducta 98.7 1.5E-07 3.2E-12 90.3 10.3 105 106-210 263-384 (519)
130 PRK05225 ketol-acid reductoiso 98.6 4.5E-08 9.7E-13 91.3 6.4 89 106-194 33-129 (487)
131 COG0287 TyrA Prephenate dehydr 98.6 2.5E-07 5.4E-12 82.2 10.8 134 109-246 3-148 (279)
132 PLN02256 arogenate dehydrogena 98.6 1.9E-07 4E-12 84.1 10.1 111 108-221 35-154 (304)
133 PRK10083 putative oxidoreducta 98.6 5.3E-08 1.1E-12 87.9 6.2 140 108-257 160-313 (339)
134 PRK07502 cyclohexadienyl dehyd 98.6 3E-07 6.6E-12 82.7 10.6 91 109-199 6-103 (307)
135 COG0686 Ald Alanine dehydrogen 98.6 1.3E-07 2.9E-12 83.8 7.6 92 107-198 166-270 (371)
136 cd01065 NAD_bind_Shikimate_DH 98.6 3.1E-07 6.7E-12 73.9 9.1 105 106-210 16-131 (155)
137 cd08238 sorbose_phosphate_red 98.6 8.5E-08 1.8E-12 89.5 6.7 140 108-257 175-346 (410)
138 PTZ00142 6-phosphogluconate de 98.6 2.8E-07 6.1E-12 87.5 10.1 107 110-217 2-125 (470)
139 PF03807 F420_oxidored: NADP o 98.6 3.3E-07 7.1E-12 68.0 8.4 86 111-197 1-95 (96)
140 PRK15059 tartronate semialdehy 98.6 5.6E-07 1.2E-11 80.6 11.4 131 111-247 2-142 (292)
141 PLN02350 phosphogluconate dehy 98.6 2.5E-07 5.4E-12 88.2 9.6 108 110-217 7-131 (493)
142 PRK08507 prephenate dehydrogen 98.5 6.9E-07 1.5E-11 79.1 11.0 85 111-198 2-93 (275)
143 TIGR01692 HIBADH 3-hydroxyisob 98.5 4.6E-07 1E-11 80.8 10.0 129 114-247 1-139 (288)
144 TIGR00872 gnd_rel 6-phosphoglu 98.5 5E-07 1.1E-11 81.0 10.1 103 111-214 2-114 (298)
145 PLN02858 fructose-bisphosphate 98.5 4.9E-07 1.1E-11 95.6 11.5 137 108-249 3-151 (1378)
146 PRK13940 glutamyl-tRNA reducta 98.5 4.8E-07 1E-11 84.7 10.0 102 106-209 178-287 (414)
147 cd05191 NAD_bind_amino_acid_DH 98.5 7.9E-07 1.7E-11 65.0 9.1 67 105-196 19-86 (86)
148 PRK06545 prephenate dehydrogen 98.5 4.4E-07 9.6E-12 83.5 9.6 90 110-200 1-99 (359)
149 PLN02545 3-hydroxybutyryl-CoA 98.5 3.8E-07 8.1E-12 81.6 8.7 109 110-219 5-142 (295)
150 PRK08655 prephenate dehydrogen 98.5 1.8E-06 4E-11 81.5 13.4 87 111-198 2-94 (437)
151 PRK05476 S-adenosyl-L-homocyst 98.5 1.9E-07 4.2E-12 87.3 6.6 85 7-92 334-424 (425)
152 PLN02712 arogenate dehydrogena 98.5 6.4E-07 1.4E-11 88.5 10.4 112 108-221 51-170 (667)
153 PRK09260 3-hydroxybutyryl-CoA 98.5 5.6E-07 1.2E-11 80.2 9.1 98 110-207 2-129 (288)
154 KOG4230|consensus 98.5 2.4E-07 5.3E-12 87.7 6.8 194 30-243 78-284 (935)
155 PRK08293 3-hydroxybutyryl-CoA 98.5 1.7E-06 3.7E-11 77.1 11.8 126 110-245 4-161 (287)
156 cd08242 MDR_like Medium chain 98.5 1.1E-07 2.5E-12 85.0 4.3 109 108-217 155-268 (319)
157 PLN02858 fructose-bisphosphate 98.5 1.2E-06 2.5E-11 92.8 12.4 136 108-248 323-470 (1378)
158 KOG0409|consensus 98.5 6.8E-07 1.5E-11 79.0 8.7 92 108-199 34-133 (327)
159 cd05311 NAD_bind_2_malic_enz N 98.5 3E-06 6.4E-11 73.2 12.5 103 105-208 21-140 (226)
160 PLN02688 pyrroline-5-carboxyla 98.4 1.3E-06 2.8E-11 76.8 10.0 92 111-203 2-103 (266)
161 PRK07819 3-hydroxybutyryl-CoA 98.4 1.9E-06 4E-11 77.0 11.1 98 110-208 6-134 (286)
162 PRK08818 prephenate dehydrogen 98.4 8.7E-07 1.9E-11 81.7 9.2 102 108-221 3-112 (370)
163 PF02737 3HCDH_N: 3-hydroxyacy 98.4 7.3E-07 1.6E-11 74.3 7.7 125 111-245 1-155 (180)
164 TIGR00936 ahcY adenosylhomocys 98.4 3.6E-07 7.8E-12 85.1 6.5 83 8-91 318-406 (406)
165 PRK12491 pyrroline-5-carboxyla 98.4 1.3E-06 2.7E-11 77.6 9.5 98 110-208 3-110 (272)
166 cd08231 MDR_TM0436_like Hypoth 98.4 3.4E-07 7.3E-12 83.6 5.8 110 108-218 177-306 (361)
167 PRK14618 NAD(P)H-dependent gly 98.4 1.2E-06 2.6E-11 79.5 9.3 88 109-198 4-106 (328)
168 PF00107 ADH_zinc_N: Zinc-bind 98.4 3.3E-07 7.1E-12 71.4 4.5 106 119-225 1-122 (130)
169 cd08285 NADP_ADH NADP(H)-depen 98.4 8.1E-07 1.8E-11 80.7 7.2 91 108-199 166-269 (351)
170 PRK14982 acyl-ACP reductase; P 98.4 2.5E-06 5.4E-11 77.7 10.2 98 104-204 150-255 (340)
171 TIGR00873 gnd 6-phosphoglucona 98.4 1E-06 2.2E-11 83.7 8.0 106 111-217 1-122 (467)
172 PRK07530 3-hydroxybutyryl-CoA 98.4 2.6E-06 5.6E-11 76.1 9.9 97 109-206 4-130 (292)
173 PRK11199 tyrA bifunctional cho 98.4 4.4E-06 9.6E-11 77.3 11.5 78 108-199 97-178 (374)
174 cd01078 NAD_bind_H4MPT_DH NADP 98.3 4.6E-06 1E-10 70.0 10.5 98 105-202 24-136 (194)
175 PRK08268 3-hydroxy-acyl-CoA de 98.3 2.3E-06 5.1E-11 82.2 8.9 97 110-207 8-134 (507)
176 PRK11064 wecC UDP-N-acetyl-D-m 98.3 3.6E-06 7.9E-11 78.9 9.9 88 110-198 4-121 (415)
177 PRK07531 bifunctional 3-hydrox 98.3 7.4E-06 1.6E-10 78.6 12.2 100 110-209 5-130 (495)
178 COG0345 ProC Pyrroline-5-carbo 98.3 6.1E-06 1.3E-10 72.7 10.6 97 110-208 2-108 (266)
179 PRK06035 3-hydroxyacyl-CoA deh 98.3 7.2E-06 1.6E-10 73.2 11.2 97 110-207 4-133 (291)
180 PRK07340 ornithine cyclodeamin 98.3 4.9E-06 1.1E-10 74.9 10.1 101 108-212 124-236 (304)
181 cd08296 CAD_like Cinnamyl alco 98.3 4.3E-06 9.3E-11 75.5 9.7 110 108-218 163-283 (333)
182 TIGR03026 NDP-sugDHase nucleot 98.3 3.1E-06 6.8E-11 79.2 9.0 88 111-198 2-122 (411)
183 COG0059 IlvC Ketol-acid reduct 98.3 2.4E-06 5.2E-11 75.7 7.4 91 107-198 16-110 (338)
184 cd08256 Zn_ADH2 Alcohol dehydr 98.3 1.4E-06 3E-11 79.1 6.0 90 108-198 174-276 (350)
185 KOG0089|consensus 98.3 3.5E-06 7.6E-11 73.3 8.0 198 30-242 82-297 (309)
186 cd05279 Zn_ADH1 Liver alcohol 98.3 2.2E-06 4.8E-11 78.6 7.4 90 108-198 183-287 (365)
187 PRK14806 bifunctional cyclohex 98.3 5.1E-06 1.1E-10 83.3 10.3 89 110-199 4-100 (735)
188 PRK05808 3-hydroxybutyryl-CoA 98.3 6.4E-06 1.4E-10 73.1 9.9 109 110-221 4-143 (282)
189 PRK00094 gpsA NAD(P)H-dependen 98.2 4.2E-06 9.1E-11 75.4 8.7 88 110-198 2-107 (325)
190 PRK13302 putative L-aspartate 98.2 3.7E-06 8.1E-11 74.5 8.1 103 108-211 5-116 (271)
191 PRK14619 NAD(P)H-dependent gly 98.2 3.5E-06 7.5E-11 75.9 8.1 78 108-198 3-84 (308)
192 cd08283 FDH_like_1 Glutathione 98.2 2.1E-06 4.6E-11 79.4 6.8 90 108-198 184-308 (386)
193 cd08284 FDH_like_2 Glutathione 98.2 4E-06 8.6E-11 75.7 8.4 90 108-198 167-268 (344)
194 TIGR02371 ala_DH_arch alanine 98.2 7.3E-06 1.6E-10 74.5 10.1 102 108-212 127-241 (325)
195 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.2 6E-06 1.3E-10 79.3 9.9 99 109-208 5-133 (503)
196 PRK06129 3-hydroxyacyl-CoA deh 98.2 1.6E-05 3.4E-10 71.7 11.8 65 110-174 3-92 (308)
197 cd08246 crotonyl_coA_red croto 98.2 2.1E-06 4.5E-11 79.5 6.2 89 108-198 193-317 (393)
198 PRK08618 ornithine cyclodeamin 98.2 1E-05 2.3E-10 73.4 10.5 88 108-198 126-223 (325)
199 PRK07679 pyrroline-5-carboxyla 98.2 1.1E-05 2.3E-10 71.7 10.3 98 109-207 3-111 (279)
200 PRK15057 UDP-glucose 6-dehydro 98.2 1.1E-05 2.4E-10 75.0 10.6 87 111-198 2-119 (388)
201 PRK06141 ornithine cyclodeamin 98.2 1.1E-05 2.3E-10 73.1 10.0 102 108-212 124-238 (314)
202 PF10727 Rossmann-like: Rossma 98.2 1.3E-06 2.8E-11 68.7 3.5 102 108-210 9-119 (127)
203 PRK15182 Vi polysaccharide bio 98.2 6.2E-06 1.4E-10 77.6 8.6 89 108-198 5-122 (425)
204 cd08286 FDH_like_ADH2 formalde 98.2 4.4E-06 9.5E-11 75.6 7.4 108 108-216 166-288 (345)
205 PLN02702 L-idonate 5-dehydroge 98.2 4E-06 8.7E-11 76.7 7.1 109 108-217 181-308 (364)
206 PF01210 NAD_Gly3P_dh_N: NAD-d 98.2 5.1E-06 1.1E-10 67.6 6.9 87 111-198 1-105 (157)
207 cd08282 PFDH_like Pseudomonas 98.2 3.5E-06 7.6E-11 77.6 6.6 90 108-198 176-287 (375)
208 PRK07680 late competence prote 98.2 1.2E-05 2.7E-10 71.0 9.8 87 111-198 2-98 (273)
209 PRK06476 pyrroline-5-carboxyla 98.2 1.1E-05 2.3E-10 70.8 9.1 96 111-208 2-106 (258)
210 cd05188 MDR Medium chain reduc 98.2 1.3E-05 2.7E-10 69.1 9.3 90 108-198 134-234 (271)
211 PRK00676 hemA glutamyl-tRNA re 98.1 9.7E-06 2.1E-10 73.7 8.6 92 106-202 171-268 (338)
212 PRK11880 pyrroline-5-carboxyla 98.1 1.6E-05 3.5E-10 69.8 9.8 96 110-207 3-106 (267)
213 PRK06130 3-hydroxybutyryl-CoA 98.1 2.2E-05 4.7E-10 70.7 10.7 98 110-207 5-127 (311)
214 cd08291 ETR_like_1 2-enoyl thi 98.1 3E-06 6.6E-11 76.1 5.1 108 108-217 142-267 (324)
215 PRK00258 aroE shikimate 5-dehy 98.1 1.6E-05 3.4E-10 70.7 9.0 106 104-209 118-235 (278)
216 cd05283 CAD1 Cinnamyl alcohol 98.1 1.1E-05 2.4E-10 73.0 8.1 109 108-217 169-286 (337)
217 PF13241 NAD_binding_7: Putati 98.1 1.8E-06 3.9E-11 65.3 2.4 87 106-197 4-92 (103)
218 PF03721 UDPG_MGDP_dh_N: UDP-g 98.1 2.3E-05 5E-10 65.6 9.2 88 110-198 1-122 (185)
219 cd08260 Zn_ADH6 Alcohol dehydr 98.1 8.1E-06 1.7E-10 73.9 6.8 90 108-198 165-266 (345)
220 cd08232 idonate-5-DH L-idonate 98.1 8.6E-06 1.9E-10 73.4 6.7 90 108-198 165-264 (339)
221 cd05285 sorbitol_DH Sorbitol d 98.1 3.5E-06 7.6E-11 76.3 4.1 90 108-198 162-267 (343)
222 PLN03154 putative allyl alcoho 98.0 3.6E-05 7.9E-10 70.3 10.3 108 108-217 158-287 (348)
223 cd08299 alcohol_DH_class_I_II_ 98.0 2.7E-05 5.7E-10 71.8 9.4 90 108-198 190-294 (373)
224 cd01076 NAD_bind_1_Glu_DH NAD( 98.0 1.8E-05 3.9E-10 68.4 7.6 105 105-212 27-153 (227)
225 TIGR02992 ectoine_eutC ectoine 98.0 3.8E-05 8.3E-10 69.8 10.1 88 108-198 128-226 (326)
226 KOG2380|consensus 98.0 4.2E-05 9.2E-10 68.8 9.6 135 108-243 51-192 (480)
227 COG1712 Predicted dinucleotide 98.0 1.6E-05 3.5E-10 67.8 6.6 87 111-198 2-93 (255)
228 COG2085 Predicted dinucleotide 98.0 2.9E-05 6.4E-10 65.7 8.1 88 110-198 2-95 (211)
229 PRK06823 ornithine cyclodeamin 98.0 3.2E-05 7E-10 70.0 8.8 100 108-210 127-239 (315)
230 cd08265 Zn_ADH3 Alcohol dehydr 98.0 2.6E-05 5.7E-10 72.0 8.2 90 108-198 203-309 (384)
231 PRK06046 alanine dehydrogenase 98.0 6E-05 1.3E-09 68.5 10.2 101 108-212 128-242 (326)
232 cd08278 benzyl_alcohol_DH Benz 98.0 5E-05 1.1E-09 69.7 9.7 90 108-198 186-287 (365)
233 PF02423 OCD_Mu_crystall: Orni 97.9 2.9E-05 6.3E-10 70.2 7.9 87 109-198 128-226 (313)
234 PRK06407 ornithine cyclodeamin 97.9 5.4E-05 1.2E-09 68.1 9.5 100 108-210 116-229 (301)
235 TIGR01470 cysG_Nterm siroheme 97.9 2.2E-05 4.7E-10 66.8 6.3 91 106-197 6-101 (205)
236 COG1023 Gnd Predicted 6-phosph 97.9 4.5E-05 9.7E-10 65.7 8.1 105 111-216 2-117 (300)
237 TIGR02825 B4_12hDH leukotriene 97.9 6.1E-05 1.3E-09 67.7 9.5 89 108-198 138-239 (325)
238 PF05221 AdoHcyase: S-adenosyl 97.9 1.4E-05 3E-10 69.9 5.0 71 25-95 188-265 (268)
239 COG1250 FadB 3-hydroxyacyl-CoA 97.9 7.7E-05 1.7E-09 67.0 9.9 107 109-217 3-139 (307)
240 cd08255 2-desacetyl-2-hydroxye 97.9 1.5E-05 3.2E-10 69.8 5.2 90 108-198 97-192 (277)
241 cd08262 Zn_ADH8 Alcohol dehydr 97.9 7.2E-06 1.6E-10 74.0 3.3 90 108-198 161-266 (341)
242 cd05211 NAD_bind_Glu_Leu_Phe_V 97.9 6.1E-05 1.3E-09 64.6 8.5 82 105-187 19-119 (217)
243 TIGR01915 npdG NADPH-dependent 97.9 5.4E-05 1.2E-09 64.8 8.1 87 111-198 2-103 (219)
244 PRK06522 2-dehydropantoate 2-r 97.9 9.8E-05 2.1E-09 65.8 10.0 87 111-198 2-102 (304)
245 PRK11730 fadB multifunctional 97.9 8.2E-05 1.8E-09 74.4 10.4 126 110-245 314-469 (715)
246 PRK06928 pyrroline-5-carboxyla 97.9 9.8E-05 2.1E-09 65.6 9.8 98 110-207 2-110 (277)
247 TIGR00507 aroE shikimate 5-deh 97.9 7.7E-05 1.7E-09 65.9 9.0 106 107-212 115-231 (270)
248 cd08287 FDH_like_ADH3 formalde 97.9 4.4E-05 9.4E-10 69.0 7.5 90 108-198 168-270 (345)
249 PRK07634 pyrroline-5-carboxyla 97.9 0.00012 2.7E-09 63.3 10.0 100 108-209 3-113 (245)
250 TIGR02437 FadB fatty oxidation 97.8 0.00011 2.3E-09 73.6 10.5 107 110-218 314-450 (714)
251 TIGR01724 hmd_rel H2-forming N 97.8 8.3E-05 1.8E-09 66.9 8.6 89 121-209 32-129 (341)
252 cd08293 PTGR2 Prostaglandin re 97.8 0.00012 2.7E-09 66.0 10.0 87 109-197 155-255 (345)
253 cd08295 double_bond_reductase_ 97.8 0.00011 2.4E-09 66.4 9.5 89 108-198 151-253 (338)
254 PRK08229 2-dehydropantoate 2-r 97.8 7.9E-05 1.7E-09 67.8 8.4 87 110-198 3-109 (341)
255 PRK13304 L-aspartate dehydroge 97.8 4.8E-05 1E-09 67.2 6.7 86 111-197 3-93 (265)
256 COG0604 Qor NADPH:quinone redu 97.8 5E-05 1.1E-09 69.1 6.8 89 108-198 142-243 (326)
257 PRK08291 ectoine utilization p 97.8 0.0002 4.3E-09 65.2 10.7 101 108-211 131-245 (330)
258 TIGR02441 fa_ox_alpha_mit fatt 97.8 0.00011 2.3E-09 73.8 9.5 126 110-245 336-491 (737)
259 cd08298 CAD2 Cinnamyl alcohol 97.8 4.6E-05 9.9E-10 68.3 6.3 90 108-198 167-258 (329)
260 cd05278 FDH_like Formaldehyde 97.8 0.00016 3.4E-09 65.3 9.8 90 108-198 167-269 (347)
261 PRK09422 ethanol-active dehydr 97.8 9.3E-05 2E-09 66.6 8.2 90 108-198 162-263 (338)
262 PRK06718 precorrin-2 dehydroge 97.8 5.4E-05 1.2E-09 64.2 6.2 89 106-196 7-100 (202)
263 PRK11154 fadJ multifunctional 97.8 0.00015 3.2E-09 72.6 10.2 126 110-245 310-466 (708)
264 cd05284 arabinose_DH_like D-ar 97.8 0.00011 2.4E-09 66.2 8.6 91 108-199 167-269 (340)
265 cd08254 hydroxyacyl_CoA_DH 6-h 97.8 0.00014 3.1E-09 65.1 9.2 90 108-198 165-265 (338)
266 TIGR02440 FadJ fatty oxidation 97.8 0.00016 3.4E-09 72.2 10.3 126 110-245 305-461 (699)
267 PRK07589 ornithine cyclodeamin 97.8 0.00016 3.4E-09 66.3 9.5 87 109-198 129-227 (346)
268 cd08270 MDR4 Medium chain dehy 97.8 6.8E-05 1.5E-09 66.3 7.0 89 108-198 132-224 (305)
269 cd08292 ETR_like_2 2-enoyl thi 97.8 0.00014 3.1E-09 64.7 9.0 89 108-198 139-240 (324)
270 TIGR01751 crot-CoA-red crotony 97.8 0.00019 4E-09 66.7 10.0 89 108-198 189-312 (398)
271 cd08245 CAD Cinnamyl alcohol d 97.7 8.3E-05 1.8E-09 66.7 7.3 90 108-198 162-258 (330)
272 TIGR00692 tdh L-threonine 3-de 97.7 9E-05 2E-09 67.0 7.5 90 108-198 161-263 (340)
273 COG2423 Predicted ornithine cy 97.7 0.00019 4E-09 65.3 9.3 98 109-209 130-241 (330)
274 PRK12921 2-dehydropantoate 2-r 97.7 0.00013 2.9E-09 65.0 8.3 97 111-209 2-117 (305)
275 cd05313 NAD_bind_2_Glu_DH NAD( 97.7 0.00023 5E-09 62.4 9.5 108 104-212 33-171 (254)
276 TIGR01546 GAPDH-II_archae glyc 97.7 0.00017 3.7E-09 65.6 9.0 82 112-193 1-105 (333)
277 TIGR01809 Shik-DH-AROM shikima 97.7 0.00024 5.1E-09 63.4 9.7 103 106-208 122-244 (282)
278 PRK12549 shikimate 5-dehydroge 97.7 0.0002 4.4E-09 63.9 9.2 108 106-216 124-249 (284)
279 PRK14030 glutamate dehydrogena 97.7 0.00017 3.7E-09 67.9 8.9 108 104-212 223-361 (445)
280 PLN02477 glutamate dehydrogena 97.7 0.00014 3E-09 68.0 8.2 108 103-212 200-328 (410)
281 PRK13301 putative L-aspartate 97.7 0.00011 2.4E-09 64.6 7.0 87 110-198 3-95 (267)
282 cd08234 threonine_DH_like L-th 97.7 4.2E-05 9.2E-10 68.6 4.5 90 108-198 159-259 (334)
283 cd08269 Zn_ADH9 Alcohol dehydr 97.7 0.00015 3.2E-09 64.2 7.9 90 108-198 129-231 (312)
284 cd08294 leukotriene_B4_DH_like 97.7 0.00023 5E-09 63.6 9.2 88 108-197 143-242 (329)
285 PRK03369 murD UDP-N-acetylmura 97.7 0.00016 3.4E-09 69.3 8.5 68 107-174 10-80 (488)
286 PRK14031 glutamate dehydrogena 97.7 0.00018 3.9E-09 67.7 8.7 94 103-197 222-343 (444)
287 cd08258 Zn_ADH4 Alcohol dehydr 97.7 0.00053 1.1E-08 61.3 11.0 111 108-219 164-290 (306)
288 cd08274 MDR9 Medium chain dehy 97.6 7.3E-05 1.6E-09 67.5 5.5 88 108-198 177-275 (350)
289 PF02153 PDH: Prephenate dehyd 97.6 0.00018 3.8E-09 63.3 7.7 121 124-245 1-134 (258)
290 TIGR02823 oxido_YhdH putative 97.6 0.00028 6.1E-09 63.0 8.9 89 108-198 144-243 (323)
291 PTZ00079 NADP-specific glutama 97.6 0.0003 6.5E-09 66.3 9.2 109 103-212 231-370 (454)
292 PRK06719 precorrin-2 dehydroge 97.6 0.00011 2.4E-09 59.8 5.6 87 106-196 10-100 (157)
293 PRK09414 glutamate dehydrogena 97.6 0.00032 7E-09 66.2 9.4 108 104-212 227-361 (445)
294 cd08264 Zn_ADH_like2 Alcohol d 97.6 0.00016 3.4E-09 64.7 7.1 85 108-198 162-255 (325)
295 cd00401 AdoHcyase S-adenosyl-L 97.6 0.00012 2.5E-09 68.6 5.9 85 6-91 323-413 (413)
296 COG0677 WecC UDP-N-acetyl-D-ma 97.6 0.00037 7.9E-09 64.2 8.8 88 110-198 10-130 (436)
297 cd08289 MDR_yhfp_like Yhfp put 97.6 0.00026 5.6E-09 63.2 7.9 89 108-198 146-245 (326)
298 cd08243 quinone_oxidoreductase 97.6 0.00036 7.7E-09 61.7 8.6 89 108-198 142-240 (320)
299 COG0334 GdhA Glutamate dehydro 97.6 0.00024 5.3E-09 65.7 7.5 93 104-198 202-314 (411)
300 PRK09310 aroDE bifunctional 3- 97.5 0.00059 1.3E-08 65.3 10.3 103 104-212 327-433 (477)
301 cd08235 iditol_2_DH_like L-idi 97.5 0.00021 4.4E-09 64.5 6.8 90 108-198 165-267 (343)
302 PRK12771 putative glutamate sy 97.5 0.00022 4.8E-09 69.4 7.4 69 108-176 136-234 (564)
303 COG3288 PntA NAD/NADP transhyd 97.5 0.00017 3.8E-09 64.1 6.0 92 107-198 162-283 (356)
304 cd08240 6_hydroxyhexanoate_dh_ 97.5 0.00087 1.9E-08 60.7 10.6 90 108-198 175-276 (350)
305 PF01408 GFO_IDH_MocA: Oxidore 97.5 0.00053 1.2E-08 52.4 7.6 65 111-175 2-73 (120)
306 cd08263 Zn_ADH10 Alcohol dehyd 97.5 0.00044 9.5E-09 63.3 8.2 90 108-198 187-289 (367)
307 cd08236 sugar_DH NAD(P)-depend 97.5 0.00028 6E-09 63.7 6.7 90 108-198 159-260 (343)
308 PF00208 ELFV_dehydrog: Glutam 97.5 0.00047 1E-08 60.2 7.8 105 106-212 29-164 (244)
309 cd08297 CAD3 Cinnamyl alcohol 97.5 0.00054 1.2E-08 61.7 8.5 90 108-198 165-267 (341)
310 PRK13771 putative alcohol dehy 97.5 0.00033 7.2E-09 62.9 7.0 88 108-198 162-257 (334)
311 cd08244 MDR_enoyl_red Possible 97.4 0.0006 1.3E-08 60.6 8.5 89 108-198 142-243 (324)
312 PRK06199 ornithine cyclodeamin 97.4 0.00051 1.1E-08 63.8 8.2 87 109-198 155-261 (379)
313 PF02558 ApbA: Ketopantoate re 97.4 0.00016 3.5E-09 57.8 4.3 94 112-207 1-114 (151)
314 cd08261 Zn_ADH7 Alcohol dehydr 97.4 0.00044 9.5E-09 62.3 7.5 90 108-198 159-260 (337)
315 cd05312 NAD_bind_1_malic_enz N 97.4 0.0029 6.4E-08 56.1 12.2 95 104-198 20-142 (279)
316 COG0569 TrkA K+ transport syst 97.4 0.00036 7.7E-09 60.2 6.3 66 110-175 1-77 (225)
317 cd05291 HicDH_like L-2-hydroxy 97.4 0.00077 1.7E-08 60.7 8.7 89 110-198 1-119 (306)
318 PTZ00431 pyrroline carboxylate 97.4 0.00074 1.6E-08 59.4 8.2 91 109-206 3-101 (260)
319 cd05280 MDR_yhdh_yhfp Yhdh and 97.4 0.0008 1.7E-08 59.8 8.4 88 109-198 147-245 (325)
320 cd08279 Zn_ADH_class_III Class 97.4 0.00059 1.3E-08 62.4 7.6 90 108-198 182-284 (363)
321 cd08259 Zn_ADH5 Alcohol dehydr 97.4 0.00056 1.2E-08 61.0 7.3 89 108-198 162-258 (332)
322 COG1648 CysG Siroheme synthase 97.4 0.00043 9.3E-09 59.1 6.1 90 106-197 9-104 (210)
323 COG1748 LYS9 Saccharopine dehy 97.4 0.00055 1.2E-08 63.4 7.3 87 110-198 2-101 (389)
324 cd00762 NAD_bind_malic_enz NAD 97.4 0.0024 5.1E-08 55.9 10.8 97 104-200 20-145 (254)
325 cd08290 ETR 2-enoyl thioester 97.3 0.00092 2E-08 60.2 8.5 89 108-198 146-253 (341)
326 PRK09287 6-phosphogluconate de 97.3 0.00081 1.8E-08 63.9 8.1 97 120-217 1-113 (459)
327 PTZ00117 malate dehydrogenase; 97.3 0.0014 2.9E-08 59.5 9.0 90 108-198 4-124 (319)
328 cd08252 AL_MDR Arginate lyase 97.3 0.0025 5.5E-08 57.0 10.8 89 109-198 150-250 (336)
329 TIGR02354 thiF_fam2 thiamine b 97.3 0.00081 1.8E-08 57.0 7.0 90 107-196 19-145 (200)
330 PRK06249 2-dehydropantoate 2-r 97.3 0.0018 3.9E-08 58.4 9.7 99 109-209 5-121 (313)
331 KOG1197|consensus 97.3 0.0025 5.3E-08 55.7 9.8 126 47-198 109-247 (336)
332 smart00829 PKS_ER Enoylreducta 97.3 0.0015 3.3E-08 56.3 8.8 89 108-198 104-207 (288)
333 cd05288 PGDH Prostaglandin deh 97.3 0.0016 3.5E-08 58.2 9.1 89 108-198 145-246 (329)
334 PRK05396 tdh L-threonine 3-deh 97.3 0.0016 3.5E-08 58.7 9.1 90 108-198 163-265 (341)
335 TIGR01921 DAP-DH diaminopimela 97.3 0.00088 1.9E-08 60.7 7.2 84 110-196 4-91 (324)
336 PRK12861 malic enzyme; Reviewe 97.2 0.0015 3.2E-08 65.5 9.3 99 102-203 182-295 (764)
337 PLN02353 probable UDP-glucose 97.2 0.0021 4.5E-08 61.4 10.1 89 110-198 2-129 (473)
338 cd05281 TDH Threonine dehydrog 97.2 0.002 4.3E-08 58.2 9.4 90 108-198 163-264 (341)
339 PTZ00082 L-lactate dehydrogena 97.2 0.0019 4.1E-08 58.7 9.1 66 107-173 4-83 (321)
340 PRK04148 hypothetical protein; 97.2 0.0012 2.6E-08 52.3 6.9 70 108-178 16-91 (134)
341 PRK12862 malic enzyme; Reviewe 97.2 0.0019 4.1E-08 64.9 9.8 99 102-203 186-299 (763)
342 PRK00066 ldh L-lactate dehydro 97.2 0.002 4.3E-08 58.4 9.1 90 108-198 5-124 (315)
343 cd05286 QOR2 Quinone oxidoredu 97.2 0.0026 5.7E-08 55.7 9.8 89 108-198 136-237 (320)
344 PRK14620 NAD(P)H-dependent gly 97.2 0.0019 4.2E-08 58.5 9.0 87 111-198 2-108 (326)
345 PRK12749 quinate/shikimate deh 97.2 0.0028 6.1E-08 56.7 9.8 105 104-208 119-246 (288)
346 TIGR02356 adenyl_thiF thiazole 97.2 0.0012 2.7E-08 55.9 7.0 35 107-141 19-54 (202)
347 PF02254 TrkA_N: TrkA-N domain 97.2 0.0025 5.4E-08 48.4 8.1 83 112-194 1-94 (116)
348 PRK00683 murD UDP-N-acetylmura 97.2 0.0012 2.6E-08 62.0 7.5 67 109-175 3-70 (418)
349 cd05282 ETR_like 2-enoyl thioe 97.1 0.0029 6.4E-08 56.1 9.5 89 108-198 138-239 (323)
350 PRK12548 shikimate 5-dehydroge 97.1 0.0037 7.9E-08 55.9 10.0 104 105-208 122-249 (289)
351 PRK12439 NAD(P)H-dependent gly 97.1 0.0016 3.4E-08 59.6 7.8 87 110-198 8-113 (341)
352 PRK05562 precorrin-2 dehydroge 97.1 0.0011 2.3E-08 57.1 6.1 89 107-196 23-116 (223)
353 PRK14106 murD UDP-N-acetylmura 97.1 0.002 4.3E-08 60.8 8.5 67 107-173 3-77 (450)
354 cd08250 Mgc45594_like Mgc45594 97.1 0.0033 7.2E-08 56.2 9.4 89 108-198 139-239 (329)
355 PRK01710 murD UDP-N-acetylmura 97.1 0.0015 3.2E-08 62.1 7.4 67 107-173 12-86 (458)
356 COG0362 Gnd 6-phosphogluconate 97.1 0.0027 5.9E-08 58.5 8.6 107 110-217 4-126 (473)
357 COG0281 SfcA Malic enzyme [Ene 97.1 0.0026 5.6E-08 59.1 8.6 105 101-208 191-312 (432)
358 PRK06223 malate dehydrogenase; 97.1 0.0023 5E-08 57.4 8.3 63 110-173 3-79 (307)
359 PRK10754 quinone oxidoreductas 97.1 0.0031 6.8E-08 56.3 9.1 89 108-198 140-241 (327)
360 PF04016 DUF364: Domain of unk 97.1 0.0014 3E-08 52.9 6.1 102 108-216 10-114 (147)
361 PRK07232 bifunctional malic en 97.1 0.003 6.4E-08 63.3 9.6 100 102-204 178-292 (752)
362 PRK00048 dihydrodipicolinate r 97.1 0.0015 3.3E-08 57.4 6.7 62 111-172 3-68 (257)
363 PRK04207 glyceraldehyde-3-phos 97.1 0.0024 5.3E-08 58.5 8.3 87 111-198 3-111 (341)
364 PRK10637 cysG siroheme synthas 97.1 0.0014 3.1E-08 62.3 7.0 92 106-198 9-105 (457)
365 PRK12809 putative oxidoreducta 97.1 0.0025 5.5E-08 63.1 9.0 68 108-175 309-406 (639)
366 PRK08300 acetaldehyde dehydrog 97.0 0.0024 5.1E-08 57.4 7.8 89 109-198 4-103 (302)
367 PRK12769 putative oxidoreducta 97.0 0.0025 5.5E-08 63.2 8.8 68 108-175 326-423 (654)
368 cd08249 enoyl_reductase_like e 97.0 0.0038 8.3E-08 56.4 9.3 89 108-198 154-256 (339)
369 COG3967 DltE Short-chain dehyd 97.0 0.0044 9.5E-08 52.6 8.8 45 107-151 3-48 (245)
370 PF03435 Saccharop_dh: Sacchar 97.0 0.0023 5E-08 59.3 7.8 83 112-196 1-98 (386)
371 PRK01390 murD UDP-N-acetylmura 97.0 0.0019 4.1E-08 61.3 7.4 66 107-172 7-73 (460)
372 COG0026 PurK Phosphoribosylami 97.0 0.0017 3.6E-08 59.4 6.6 62 109-170 1-68 (375)
373 TIGR01318 gltD_gamma_fam gluta 97.0 0.0031 6.6E-08 60.2 8.8 69 108-176 140-238 (467)
374 PLN02520 bifunctional 3-dehydr 97.0 0.0051 1.1E-07 59.6 10.3 112 105-216 375-497 (529)
375 PF00056 Ldh_1_N: lactate/mala 97.0 0.0014 2.9E-08 52.4 5.4 64 111-174 2-79 (141)
376 PF03949 Malic_M: Malic enzyme 97.0 0.0032 7E-08 55.1 8.0 96 104-199 20-144 (255)
377 PRK00141 murD UDP-N-acetylmura 97.0 0.0026 5.6E-08 60.8 8.0 66 107-172 13-82 (473)
378 PRK12475 thiamine/molybdopteri 97.0 0.0022 4.8E-08 58.7 7.2 36 107-142 22-58 (338)
379 PRK12557 H(2)-dependent methyl 97.0 0.0037 7.9E-08 57.3 8.6 80 121-201 32-121 (342)
380 PF01113 DapB_N: Dihydrodipico 97.0 0.0012 2.6E-08 51.5 4.6 82 111-194 2-96 (124)
381 PRK01438 murD UDP-N-acetylmura 97.0 0.0027 5.9E-08 60.5 8.0 69 106-174 13-88 (480)
382 COG0169 AroE Shikimate 5-dehyd 97.0 0.0061 1.3E-07 54.4 9.5 110 105-217 122-249 (283)
383 cd08273 MDR8 Medium chain dehy 97.0 0.0025 5.4E-08 56.9 7.2 88 108-198 139-235 (331)
384 COG2227 UbiG 2-polyprenyl-3-me 96.9 0.0037 8E-08 54.1 7.7 87 107-195 58-160 (243)
385 PRK05708 2-dehydropantoate 2-r 96.9 0.0027 5.8E-08 57.2 7.1 99 110-208 3-118 (305)
386 PRK03659 glutathione-regulated 96.9 0.0033 7.1E-08 61.9 8.2 90 109-198 400-500 (601)
387 cd08241 QOR1 Quinone oxidoredu 96.9 0.0063 1.4E-07 53.4 9.3 89 108-198 139-240 (323)
388 cd08266 Zn_ADH_like1 Alcohol d 96.9 0.0035 7.5E-08 55.7 7.7 89 108-198 166-267 (342)
389 PRK14027 quinate/shikimate deh 96.9 0.0038 8.2E-08 55.7 7.8 100 106-208 124-242 (283)
390 PF00185 OTCace: Aspartate/orn 96.9 0.015 3.3E-07 47.3 10.7 90 108-197 1-121 (158)
391 TIGR02817 adh_fam_1 zinc-bindi 96.9 0.0067 1.4E-07 54.4 9.3 87 109-196 149-247 (336)
392 cd08253 zeta_crystallin Zeta-c 96.9 0.0043 9.3E-08 54.6 7.9 89 108-198 144-245 (325)
393 PRK02472 murD UDP-N-acetylmura 96.9 0.004 8.8E-08 58.7 8.0 66 107-172 3-76 (447)
394 TIGR03215 ac_ald_DH_ac acetald 96.8 0.0052 1.1E-07 54.9 8.2 85 111-196 3-95 (285)
395 cd05292 LDH_2 A subgroup of L- 96.8 0.0029 6.3E-08 57.1 6.7 88 111-198 2-118 (308)
396 PRK09496 trkA potassium transp 96.8 0.0026 5.5E-08 60.0 6.6 64 111-174 2-75 (453)
397 COG0771 MurD UDP-N-acetylmuram 96.8 0.0031 6.7E-08 59.6 7.0 67 107-173 5-78 (448)
398 COG1004 Ugd Predicted UDP-gluc 96.8 0.0048 1.1E-07 57.0 8.1 88 111-198 2-122 (414)
399 PRK03562 glutathione-regulated 96.8 0.003 6.5E-08 62.4 7.2 86 109-194 400-496 (621)
400 PTZ00354 alcohol dehydrogenase 96.8 0.0068 1.5E-07 54.0 9.0 89 108-198 140-242 (334)
401 PRK08324 short chain dehydroge 96.8 0.0041 8.9E-08 62.0 8.2 42 106-147 419-461 (681)
402 cd01339 LDH-like_MDH L-lactate 96.8 0.004 8.6E-08 55.9 7.3 86 112-198 1-117 (300)
403 cd08276 MDR7 Medium chain dehy 96.8 0.015 3.2E-07 51.7 11.1 89 108-198 160-261 (336)
404 PRK13303 L-aspartate dehydroge 96.8 0.0033 7.1E-08 55.5 6.6 83 110-193 2-89 (265)
405 cd05276 p53_inducible_oxidored 96.8 0.011 2.5E-07 51.7 10.1 89 108-198 139-240 (323)
406 cd08248 RTN4I1 Human Reticulon 96.8 0.0085 1.8E-07 54.0 9.4 88 108-198 162-259 (350)
407 PRK10669 putative cation:proto 96.8 0.0039 8.4E-08 60.7 7.5 66 109-174 417-491 (558)
408 smart00859 Semialdhyde_dh Semi 96.8 0.0038 8.3E-08 48.2 6.0 88 111-198 1-101 (122)
409 cd08267 MDR1 Medium chain dehy 96.8 0.0034 7.3E-08 55.4 6.4 89 108-198 143-242 (319)
410 cd05195 enoyl_red enoyl reduct 96.8 0.01 2.2E-07 51.1 9.3 89 108-198 108-211 (293)
411 PF13460 NAD_binding_10: NADH( 96.8 0.0058 1.3E-07 50.0 7.3 60 112-173 1-69 (183)
412 cd00650 LDH_MDH_like NAD-depen 96.7 0.0035 7.5E-08 55.2 6.2 87 112-198 1-121 (263)
413 TIGR01763 MalateDH_bact malate 96.7 0.0056 1.2E-07 55.2 7.6 88 110-198 2-120 (305)
414 PRK08644 thiamine biosynthesis 96.7 0.0055 1.2E-07 52.4 7.0 35 107-141 26-61 (212)
415 PF03447 NAD_binding_3: Homose 96.7 0.0032 7E-08 48.2 5.0 82 116-198 1-92 (117)
416 PRK07688 thiamine/molybdopteri 96.7 0.0053 1.2E-07 56.2 7.2 35 107-141 22-57 (339)
417 TIGR00670 asp_carb_tr aspartat 96.7 0.024 5.2E-07 51.0 11.1 92 106-197 147-264 (301)
418 cd00300 LDH_like L-lactate deh 96.6 0.0096 2.1E-07 53.5 8.5 87 112-198 1-117 (300)
419 COG5322 Predicted dehydrogenas 96.6 0.0059 1.3E-07 53.7 6.8 96 103-201 161-267 (351)
420 COG0240 GpsA Glycerol-3-phosph 96.6 0.01 2.2E-07 53.8 8.5 88 110-198 2-107 (329)
421 COG1893 ApbA Ketopantoate redu 96.6 0.015 3.3E-07 52.5 9.7 98 111-211 2-117 (307)
422 TIGR03376 glycerol3P_DH glycer 96.6 0.011 2.5E-07 54.1 8.9 88 111-198 1-118 (342)
423 PRK06444 prephenate dehydrogen 96.6 0.0036 7.7E-08 52.9 5.2 77 111-221 2-79 (197)
424 PRK08762 molybdopterin biosynt 96.6 0.006 1.3E-07 56.6 7.1 35 107-141 133-168 (376)
425 cd08268 MDR2 Medium chain dehy 96.6 0.015 3.2E-07 51.3 9.4 89 108-198 144-245 (328)
426 KOG1198|consensus 96.6 0.0079 1.7E-07 55.2 7.7 68 108-175 157-236 (347)
427 PRK12550 shikimate 5-dehydroge 96.6 0.014 3.1E-07 51.7 9.0 104 108-216 121-238 (272)
428 PF01118 Semialdhyde_dh: Semia 96.6 0.0044 9.4E-08 48.0 5.0 86 111-198 1-99 (121)
429 PRK03806 murD UDP-N-acetylmura 96.5 0.011 2.5E-07 55.6 8.7 67 107-173 4-74 (438)
430 TIGR02355 moeB molybdopterin s 96.5 0.0077 1.7E-07 52.5 6.9 35 107-141 22-57 (240)
431 cd08288 MDR_yhdh Yhdh putative 96.5 0.015 3.2E-07 51.7 9.0 89 108-198 146-244 (324)
432 cd08251 polyketide_synthase po 96.5 0.008 1.7E-07 52.4 7.1 89 108-198 120-221 (303)
433 PRK05690 molybdopterin biosynt 96.5 0.0091 2E-07 52.1 7.3 35 107-141 30-65 (245)
434 cd00757 ThiF_MoeB_HesA_family 96.5 0.0074 1.6E-07 52.0 6.7 35 107-141 19-54 (228)
435 TIGR02824 quinone_pig3 putativ 96.5 0.025 5.5E-07 49.7 10.2 89 108-198 139-240 (325)
436 cd05289 MDR_like_2 alcohol deh 96.5 0.0093 2E-07 52.1 7.3 88 108-198 144-240 (309)
437 PRK00421 murC UDP-N-acetylmura 96.5 0.006 1.3E-07 57.9 6.5 66 107-172 5-74 (461)
438 cd05293 LDH_1 A subgroup of L- 96.5 0.0084 1.8E-07 54.3 7.1 89 109-198 3-122 (312)
439 PF03720 UDPG_MGDP_dh_C: UDP-g 96.5 0.015 3.3E-07 44.0 7.5 76 120-195 18-100 (106)
440 PF00070 Pyr_redox: Pyridine n 96.5 0.0066 1.4E-07 43.2 5.2 34 111-144 1-34 (80)
441 PRK12814 putative NADPH-depend 96.5 0.011 2.4E-07 58.7 8.6 94 108-201 192-335 (652)
442 cd01487 E1_ThiF_like E1_ThiF_l 96.5 0.0098 2.1E-07 49.2 6.9 32 111-142 1-33 (174)
443 PRK05597 molybdopterin biosynt 96.5 0.0097 2.1E-07 54.8 7.4 36 107-142 26-62 (355)
444 PRK05600 thiamine biosynthesis 96.4 0.01 2.2E-07 55.0 7.4 35 107-141 39-74 (370)
445 PRK08265 short chain dehydroge 96.4 0.028 6.2E-07 48.8 9.9 41 107-147 4-45 (261)
446 PRK05786 fabG 3-ketoacyl-(acyl 96.4 0.019 4.1E-07 48.8 8.6 40 107-146 3-43 (238)
447 PTZ00345 glycerol-3-phosphate 96.4 0.019 4E-07 53.2 9.0 87 110-198 12-131 (365)
448 PRK13529 malate dehydrogenase; 96.4 0.051 1.1E-06 52.6 12.1 97 102-198 288-419 (563)
449 PRK08223 hypothetical protein; 96.4 0.013 2.7E-07 52.4 7.4 35 107-141 25-60 (287)
450 PRK01368 murD UDP-N-acetylmura 96.4 0.0097 2.1E-07 56.6 7.2 65 108-173 5-72 (454)
451 TIGR01850 argC N-acetyl-gamma- 96.4 0.0085 1.9E-07 55.0 6.6 86 111-198 2-101 (346)
452 PRK05086 malate dehydrogenase; 96.4 0.014 3.1E-07 52.8 7.8 89 110-198 1-120 (312)
453 KOG2304|consensus 96.3 0.0049 1.1E-07 52.9 4.2 102 108-209 10-146 (298)
454 TIGR02964 xanthine_xdhC xanthi 96.3 0.016 3.5E-07 50.6 7.6 102 108-210 99-210 (246)
455 PLN02602 lactate dehydrogenase 96.3 0.012 2.6E-07 54.1 7.1 88 110-198 38-156 (350)
456 KOG0399|consensus 96.3 0.014 3E-07 60.3 7.8 65 108-172 1784-1878(2142)
457 COG2130 Putative NADP-dependen 96.3 0.019 4.2E-07 51.3 7.9 108 107-216 149-278 (340)
458 PRK11579 putative oxidoreducta 96.3 0.015 3.2E-07 53.1 7.5 61 110-172 5-72 (346)
459 PRK09496 trkA potassium transp 96.3 0.018 3.9E-07 54.3 8.3 67 107-173 229-306 (453)
460 PRK02006 murD UDP-N-acetylmura 96.3 0.012 2.5E-07 56.6 7.1 67 107-173 5-78 (498)
461 PRK04308 murD UDP-N-acetylmura 96.3 0.018 3.8E-07 54.5 8.2 67 107-173 3-76 (445)
462 PRK00856 pyrB aspartate carbam 96.3 0.032 6.8E-07 50.4 9.4 91 106-197 153-263 (305)
463 PRK04690 murD UDP-N-acetylmura 96.3 0.011 2.3E-07 56.5 6.7 67 107-173 6-78 (468)
464 PLN02527 aspartate carbamoyltr 96.2 0.064 1.4E-06 48.4 11.1 92 106-197 148-267 (306)
465 TIGR01532 E4PD_g-proteo D-eryt 96.2 0.011 2.4E-07 53.8 6.2 87 111-198 1-122 (325)
466 cd08272 MDR6 Medium chain dehy 96.2 0.032 7E-07 49.1 9.1 88 108-198 144-243 (326)
467 PLN02342 ornithine carbamoyltr 96.2 0.06 1.3E-06 49.5 10.9 93 106-198 191-309 (348)
468 PRK03803 murD UDP-N-acetylmura 96.2 0.016 3.5E-07 54.8 7.5 65 108-172 5-76 (448)
469 PRK06019 phosphoribosylaminoim 96.2 0.016 3.4E-07 53.6 7.2 61 110-170 3-69 (372)
470 PRK12779 putative bifunctional 96.2 0.016 3.4E-07 60.0 7.7 67 108-174 305-402 (944)
471 PLN03129 NADP-dependent malic 96.1 0.085 1.8E-06 51.3 12.0 96 102-198 314-438 (581)
472 cd01336 MDH_cytoplasmic_cytoso 96.1 0.023 5E-07 51.7 7.8 88 111-198 4-130 (325)
473 PRK12810 gltD glutamate syntha 96.1 0.029 6.2E-07 53.5 8.6 68 108-175 142-239 (471)
474 PRK07806 short chain dehydroge 96.1 0.052 1.1E-06 46.4 9.5 36 107-142 4-40 (248)
475 COG0673 MviM Predicted dehydro 96.1 0.028 6E-07 50.7 8.1 63 110-172 4-75 (342)
476 PTZ00317 NADP-dependent malic 96.0 0.09 1.9E-06 50.9 11.6 97 102-198 290-418 (559)
477 PLN03209 translocon at the inn 96.0 0.025 5.5E-07 55.1 7.8 67 108-174 79-169 (576)
478 CHL00194 ycf39 Ycf39; Provisio 96.0 0.029 6.2E-07 50.4 7.8 62 111-172 2-72 (317)
479 PRK06182 short chain dehydroge 96.0 0.04 8.7E-07 48.1 8.5 66 108-173 2-83 (273)
480 PRK05993 short chain dehydroge 96.0 0.035 7.5E-07 48.7 8.1 46 108-153 3-49 (277)
481 PRK05693 short chain dehydroge 95.9 0.049 1.1E-06 47.5 8.9 64 110-173 2-81 (274)
482 PRK02255 putrescine carbamoylt 95.9 0.09 1.9E-06 48.2 10.7 92 106-197 151-273 (338)
483 cd05297 GH4_alpha_glucosidase_ 95.9 0.014 3.1E-07 54.9 5.7 62 111-172 2-82 (423)
484 PRK12742 oxidoreductase; Provi 95.9 0.084 1.8E-06 44.7 10.0 34 107-140 4-38 (237)
485 PRK00779 ornithine carbamoyltr 95.9 0.063 1.4E-06 48.4 9.6 92 106-197 149-266 (304)
486 PRK11873 arsM arsenite S-adeno 95.9 0.016 3.5E-07 51.0 5.5 87 108-196 77-183 (272)
487 PRK01713 ornithine carbamoyltr 95.8 0.076 1.6E-06 48.5 9.9 93 106-198 153-277 (334)
488 PRK05472 redox-sensing transcr 95.8 0.0091 2E-07 50.9 3.6 66 108-174 83-156 (213)
489 PRK00436 argC N-acetyl-gamma-g 95.8 0.021 4.6E-07 52.3 6.2 88 110-198 3-101 (343)
490 TIGR01317 GOGAT_sm_gam glutama 95.8 0.047 1E-06 52.3 8.8 35 108-142 142-176 (485)
491 cd05290 LDH_3 A subgroup of L- 95.8 0.024 5.2E-07 51.2 6.4 88 111-198 1-121 (307)
492 TIGR00658 orni_carb_tr ornithi 95.8 0.082 1.8E-06 47.7 9.8 92 107-198 146-266 (304)
493 PRK05866 short chain dehydroge 95.8 0.054 1.2E-06 48.2 8.6 43 105-147 36-79 (293)
494 TIGR01759 MalateDH-SF1 malate 95.8 0.02 4.3E-07 52.1 5.8 89 110-198 4-131 (323)
495 PRK07326 short chain dehydroge 95.8 0.052 1.1E-06 46.0 8.1 40 107-146 4-44 (237)
496 PTZ00325 malate dehydrogenase; 95.8 0.025 5.5E-07 51.4 6.4 91 107-198 6-127 (321)
497 PRK04284 ornithine carbamoyltr 95.7 0.081 1.8E-06 48.3 9.7 93 106-198 152-276 (332)
498 PRK08217 fabG 3-ketoacyl-(acyl 95.7 0.029 6.3E-07 47.9 6.5 40 107-146 3-43 (253)
499 TIGR03026 NDP-sugDHase nucleot 95.7 0.059 1.3E-06 50.5 9.1 87 106-194 310-408 (411)
500 PLN02819 lysine-ketoglutarate 95.7 0.038 8.3E-07 57.4 8.3 65 108-172 568-656 (1042)
No 1
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=99.95 E-value=3e-28 Score=219.47 Aligned_cols=199 Identities=18% Similarity=0.229 Sum_probs=155.1
Q ss_pred CCCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHH
Q psy16115 44 GRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKG 123 (258)
Q Consensus 44 ~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~ 123 (258)
.+.++.|+++|++.+++||++++.+++...|++.+... ..+.|.|.... ......+.++.|||+||+|+|+||+.
T Consensus 86 ~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~----~~r~g~w~~~~-~~~~~~~~~l~gktvGIiG~GrIG~a 160 (324)
T COG1052 86 KERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDR----RVREGNWSLSG-GPDPLLGFDLRGKTLGIIGLGRIGQA 160 (324)
T ss_pred HHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHH----HHhcCcccccC-CcccccccCCCCCEEEEECCCHHHHH
Confidence 34589999999999999999999999999999876443 24556664432 11122356789999999999999999
Q ss_pred HHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC-
Q psy16115 124 CCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS- 198 (258)
Q Consensus 124 ~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~- 198 (258)
+|+++++|||+|++||+++. .+...+.++.+.++++++++||+|++| ..|.++|+++.|++||+|+++||+|||
T Consensus 161 vA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~ 239 (324)
T COG1052 161 VARRLKGFGMKVLYYDRSPN-PEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGG 239 (324)
T ss_pred HHHHHhcCCCEEEEECCCCC-hHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCcc
Confidence 99999999999999999886 334445567888899999999999997 378899999999999999999999999
Q ss_pred --ChhhchhhhcCCCceeeeeccCcceee-cCCCcc--CCCceeEEecCCChhHHHH
Q psy16115 199 --NTEIDVNSLRTPDLTWEKVRSQVDHVI-WPDVNL--KNNTVIDLFRKPKSRLYLE 250 (258)
Q Consensus 199 --~~~~~~~~l~~~~i~~~~~~~~~~~~~-~~~~~l--~~~~~~~l~~~~~~~~~~~ 250 (258)
|+++++++|++|+|...++..+..+-. ....++ .+.+.+ +-.||.++++.
T Consensus 240 ~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~v--vltPHia~at~ 294 (324)
T COG1052 240 LVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNV--VLTPHIASATE 294 (324)
T ss_pred ccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCE--EEccccccccH
Confidence 999999999999998877755443311 122222 221112 22688887764
No 2
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.95 E-value=2e-27 Score=214.25 Aligned_cols=191 Identities=20% Similarity=0.255 Sum_probs=150.6
Q ss_pred CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115 47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ 126 (258)
Q Consensus 47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~ 126 (258)
++.|.|.|+.++..+||+++..++...|++...... .+.|.|.. ....+.++.||||||||+|.||+.+|+
T Consensus 89 gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~----~~~g~W~~-----~~~~g~el~gkTvGIiG~G~IG~~va~ 159 (324)
T COG0111 89 GILVVNAPGGNAISVAELVLALLLALARRIPDADAS----QRRGEWDR-----KAFRGTELAGKTVGIIGLGRIGRAVAK 159 (324)
T ss_pred CCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHH----HHcCCccc-----cccccccccCCEEEEECCCHHHHHHHH
Confidence 899999999999999999999999999998865432 36677764 222356789999999999999999999
Q ss_pred HHHhCCCEEEEEeCChhhHHHHHhCCC-cccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC---
Q psy16115 127 SLKGLGCVIYITEIDPICALQACMDGF-SVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS--- 198 (258)
Q Consensus 127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~-~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~--- 198 (258)
++++|||+|++||+...+.. +...+. ...++++++++||+|++| ..|.++++++.|++||+|+++||+|||
T Consensus 160 ~l~afgm~v~~~d~~~~~~~-~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vV 238 (324)
T COG0111 160 RLKAFGMKVIGYDPYSPRER-AGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVV 238 (324)
T ss_pred HHHhCCCeEEEECCCCchhh-hccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCccee
Confidence 99999999999999554432 222333 456799999999999998 379999999999999999999999999
Q ss_pred ChhhchhhhcCCCceeeeeccCcceeecCC-CccCCCceeEEecCCChhHHHH
Q psy16115 199 NTEIDVNSLRTPDLTWEKVRSQVDHVIWPD-VNLKNNTVIDLFRKPKSRLYLE 250 (258)
Q Consensus 199 ~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~ 250 (258)
|+++++++|++|+|....+.-+..+ +++. +.+-....+ +-+||.+....
T Consensus 239 de~aL~~AL~~G~i~gA~lDVf~~E-Pl~~~~pL~~~pnV--~~TPHia~~T~ 288 (324)
T COG0111 239 DEDALLAALDSGKIAGAALDVFEEE-PLPADSPLWDLPNV--ILTPHIGGSTD 288 (324)
T ss_pred cHHHHHHHHHcCCcceEEecCCCCC-CCCCCChhhcCCCe--EECCcccccCH
Confidence 9999999999999987776444433 3333 244444443 23577765443
No 3
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=99.94 E-value=1.9e-26 Score=207.48 Aligned_cols=194 Identities=17% Similarity=0.195 Sum_probs=145.9
Q ss_pred CCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchh-hhccCcCcccCCCEEEEEcCchHHHH
Q psy16115 45 RYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY-SLKRSTDVMFGGKQVVLCGYGEVGKG 123 (258)
Q Consensus 45 ~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~l~g~~V~IiG~G~IG~~ 123 (258)
+.++.|++.|++.+.++||+++.+++...|++...... .+.|.|..... ......+.++.|+||||+|+|.||+.
T Consensus 84 ~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~----~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~ 159 (311)
T PRK08410 84 KKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRY----VKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKR 159 (311)
T ss_pred hCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHH----HHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHH
Confidence 34899999999999999999999999888888654332 24455642110 00000134689999999999999999
Q ss_pred HHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC-
Q psy16115 124 CCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS- 198 (258)
Q Consensus 124 ~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~- 198 (258)
+|+++++|||+|++||++.... ..++...++++++++||+|++| ..|.++|+++.|++||+|+++||+|||
T Consensus 160 vA~~~~~fgm~V~~~d~~~~~~----~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~ 235 (311)
T PRK08410 160 VAKIAQAFGAKVVYYSTSGKNK----NEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGG 235 (311)
T ss_pred HHHHHhhcCCEEEEECCCcccc----ccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCcc
Confidence 9999999999999999864321 2355677999999999999998 378899999999999999999999999
Q ss_pred --ChhhchhhhcCCCceeeeeccCcceeecC-CCccCCC---ceeEEecCCChhHHHH
Q psy16115 199 --NTEIDVNSLRTPDLTWEKVRSQVDHVIWP-DVNLKNN---TVIDLFRKPKSRLYLE 250 (258)
Q Consensus 199 --~~~~~~~~l~~~~i~~~~~~~~~~~~~~~-~~~l~~~---~~~~l~~~~~~~~~~~ 250 (258)
|+++++++|++|+|. .++..+..+ +++ .+++-+- .. .+-+||.+.++.
T Consensus 236 vVDe~AL~~AL~~g~i~-AaLDV~~~E-P~~~~~pL~~~~~~~N--vilTPH~a~~t~ 289 (311)
T PRK08410 236 IVNEKDLAKALDEKDIY-AGLDVLEKE-PMEKNHPLLSIKNKEK--LLITPHIAWASK 289 (311)
T ss_pred ccCHHHHHHHHHcCCeE-EEEecCCCC-CCCCCChhhccCCCCC--EEECCccccCCH
Confidence 999999999999998 766443322 222 2222211 11 233789876543
No 4
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=99.93 E-value=7.2e-26 Score=204.57 Aligned_cols=196 Identities=15% Similarity=0.127 Sum_probs=148.4
Q ss_pred CCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHH
Q psy16115 45 RYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGC 124 (258)
Q Consensus 45 ~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~ 124 (258)
++++.|++.|+..+.++||+++.+++...|++..... ..+.|.|...... ...+.++.|+|+||+|+|.||+.+
T Consensus 87 ~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~----~~~~g~w~~~~~~--~~~g~~L~gktvGIiG~G~IG~~v 160 (323)
T PRK15409 87 ARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAE----RVKAGEWTASIGP--DWFGTDVHHKTLGIVGMGRIGMAL 160 (323)
T ss_pred HCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHH----HHHcCCCcccCcc--ccccCCCCCCEEEEEcccHHHHHH
Confidence 3489999999999999999999999999998865432 2345666422100 112457899999999999999999
Q ss_pred HHHHH-hCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC-
Q psy16115 125 CQSLK-GLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS- 198 (258)
Q Consensus 125 a~~l~-~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~- 198 (258)
|++++ +|||+|+++|+..... .....+....++++++++||+|++| ..|.++++++.|++||+|+++||+|||
T Consensus 161 a~~l~~~fgm~V~~~~~~~~~~-~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 239 (323)
T PRK15409 161 AQRAHFGFNMPILYNARRHHKE-AEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGP 239 (323)
T ss_pred HHHHHhcCCCEEEEECCCCchh-hHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCcc
Confidence 99998 9999999999875322 2234566777999999999999997 378899999999999999999999999
Q ss_pred --ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHH
Q psy16115 199 --NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYL 249 (258)
Q Consensus 199 --~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 249 (258)
|+++++++|++|+|...++..+..+-..+.+.+-+...+ +-+||.+.++
T Consensus 240 vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nv--ilTPHia~~t 290 (323)
T PRK15409 240 VVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNV--VAVPHIGSAT 290 (323)
T ss_pred ccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCE--EEcCcCCCCc
Confidence 999999999999997766643332211123334333333 2367776543
No 5
>PRK06932 glycerate dehydrogenase; Provisional
Probab=99.93 E-value=2.2e-25 Score=200.85 Aligned_cols=165 Identities=15% Similarity=0.113 Sum_probs=131.5
Q ss_pred CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchh-hhccCcCcccCCCEEEEEcCchHHHHH
Q psy16115 46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY-SLKRSTDVMFGGKQVVLCGYGEVGKGC 124 (258)
Q Consensus 46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~l~g~~V~IiG~G~IG~~~ 124 (258)
.++.|++.|++.+.++||+++.+++...|++...... .+.|.|..... ......+.++.|+||||+|+|.||+.+
T Consensus 87 ~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~~~~~~----~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~v 162 (314)
T PRK06932 87 LGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRD----QLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEV 162 (314)
T ss_pred CCCEEEeCCCCChhHHHHHHHHHHHHHHhChHHHHHH----HHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHH
Confidence 3889999999999999999999998888887654332 23455642110 000011346899999999999999999
Q ss_pred HHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC--
Q psy16115 125 CQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS-- 198 (258)
Q Consensus 125 a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~-- 198 (258)
|+++++|||+|+++|+.+... ......++++++++||+|++| ..|.++++++.|++||+|+++||+|||
T Consensus 163 a~~l~~fg~~V~~~~~~~~~~-----~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~ 237 (314)
T PRK06932 163 GRLAQALGMKVLYAEHKGASV-----CREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPL 237 (314)
T ss_pred HHHHhcCCCEEEEECCCcccc-----cccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccc
Confidence 999999999999998754211 112356899999999999998 368899999999999999999999999
Q ss_pred -ChhhchhhhcCCCceeeeecc
Q psy16115 199 -NTEIDVNSLRTPDLTWEKVRS 219 (258)
Q Consensus 199 -~~~~~~~~l~~~~i~~~~~~~ 219 (258)
|+++++++|++|+|...++..
T Consensus 238 Vde~AL~~aL~~g~i~gAaLDV 259 (314)
T PRK06932 238 VDEQALLDALENGKIAGAALDV 259 (314)
T ss_pred cCHHHHHHHHHcCCccEEEEec
Confidence 999999999999997666543
No 6
>PRK06487 glycerate dehydrogenase; Provisional
Probab=99.92 E-value=2.9e-25 Score=200.30 Aligned_cols=190 Identities=19% Similarity=0.167 Sum_probs=144.3
Q ss_pred CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchh-hhccCcCcccCCCEEEEEcCchHHHHH
Q psy16115 46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY-SLKRSTDVMFGGKQVVLCGYGEVGKGC 124 (258)
Q Consensus 46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~l~g~~V~IiG~G~IG~~~ 124 (258)
.++.|++.|++.+.++||+++.+++...|++..... ..+.|.|..... ......+.++.|+||||+|+|.||+.+
T Consensus 88 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~----~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~v 163 (317)
T PRK06487 88 RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQ----AVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAV 163 (317)
T ss_pred CCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHH----HHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHH
Confidence 489999999999999999999999999998865433 234455642210 000112346899999999999999999
Q ss_pred HHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC--
Q psy16115 125 CQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS-- 198 (258)
Q Consensus 125 a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~-- 198 (258)
|+++++|||+|++||+.... ......++++++++||+|++| ..|.++++++.|++||+|+++||+|||
T Consensus 164 A~~l~~fgm~V~~~~~~~~~------~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~v 237 (317)
T PRK06487 164 ARLAEAFGMRVLIGQLPGRP------ARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGL 237 (317)
T ss_pred HHHHhhCCCEEEEECCCCCc------ccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccc
Confidence 99999999999999976421 123456899999999999998 378899999999999999999999999
Q ss_pred -ChhhchhhhcCCCceeeeeccCcceeecCC-CccC----CCceeEEecCCChhHHHH
Q psy16115 199 -NTEIDVNSLRTPDLTWEKVRSQVDHVIWPD-VNLK----NNTVIDLFRKPKSRLYLE 250 (258)
Q Consensus 199 -~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~-~~l~----~~~~~~l~~~~~~~~~~~ 250 (258)
|+++++++|++|+|...++..+..+ +++. +.+- ++-++ +||.+.++.
T Consensus 238 Vde~AL~~AL~~g~i~gAaLDVf~~E-P~~~~~pl~~~~~pnvil----TPHia~~t~ 290 (317)
T PRK06487 238 VDEQALADALRSGHLGGAATDVLSVE-PPVNGNPLLAPDIPRLIV----TPHSAWGSR 290 (317)
T ss_pred cCHHHHHHHHHcCCeeEEEeecCCCC-CCCCCCchhhcCCCCEEE----CCccccCCH
Confidence 9999999999999977666433222 2232 2222 23333 789886553
No 7
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.92 E-value=2e-24 Score=196.20 Aligned_cols=198 Identities=17% Similarity=0.155 Sum_probs=151.1
Q ss_pred CCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhh--hccCcCcccCCCEEEEEcCchHHH
Q psy16115 45 RYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYS--LKRSTDVMFGGKQVVLCGYGEVGK 122 (258)
Q Consensus 45 ~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~l~g~~V~IiG~G~IG~ 122 (258)
+.++.|++.|++.+.++||+++.+++...|++..... ..+.|.|...... .....+.++.|++|||||+|.||+
T Consensus 88 ~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~----~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~ 163 (333)
T PRK13243 88 RRGIYVTNTPGVLTEATADFAWALLLATARRLVEADH----FVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQ 163 (333)
T ss_pred HcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHH----HHHcCCCCccccccccccccccCCCCCEEEEECcCHHHH
Confidence 3488999999999999999999999988888765332 2344556421100 001124578999999999999999
Q ss_pred HHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC
Q psy16115 123 GCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 123 ~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.+|+++++||++|++||+++... .....+....++++++++||+|++|. .|.++++++.|+.||+|+++||+||+
T Consensus 164 ~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg 242 (333)
T PRK13243 164 AVARRAKGFGMRILYYSRTRKPE-AEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARG 242 (333)
T ss_pred HHHHHHHHCCCEEEEECCCCChh-hHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCc
Confidence 99999999999999999986543 23345666678999999999999983 57889999999999999999999999
Q ss_pred ---ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHH
Q psy16115 199 ---NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLE 250 (258)
Q Consensus 199 ---~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~ 250 (258)
|+++++++|++|+|...++..+..+ +++.+++-+...+ +-+||++.++.
T Consensus 243 ~~vd~~aL~~aL~~g~i~gAaLDV~~~E-P~~~~pL~~~~nv--ilTPHia~~t~ 294 (333)
T PRK13243 243 KVVDTKALVKALKEGWIAGAGLDVFEEE-PYYNEELFSLKNV--VLAPHIGSATF 294 (333)
T ss_pred hhcCHHHHHHHHHcCCeEEEEeccCCCC-CCCCchhhcCCCE--EECCcCCcCHH
Confidence 9999999999999976665433322 3334444444433 34699887664
No 8
>PLN03139 formate dehydrogenase; Provisional
Probab=99.91 E-value=2.6e-24 Score=197.84 Aligned_cols=166 Identities=17% Similarity=0.159 Sum_probs=136.9
Q ss_pred CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115 46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC 125 (258)
Q Consensus 46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a 125 (258)
.++.|+++|+..+.+|||+++.+++...|++...... .+.|.|..... ...+.++.|++|||+|+|.||+.+|
T Consensus 143 ~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~----~~~g~W~~~~~---~~~~~~L~gktVGIVG~G~IG~~vA 215 (386)
T PLN03139 143 AGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQ----VVSGEWNVAGI---AYRAYDLEGKTVGTVGAGRIGRLLL 215 (386)
T ss_pred CCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHH----HHhCCCccccc---cCCCcCCCCCEEEEEeecHHHHHHH
Confidence 3899999999999999999999999999998764432 34566642110 1124578999999999999999999
Q ss_pred HHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC--
Q psy16115 126 QSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS-- 198 (258)
Q Consensus 126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~-- 198 (258)
++|+.||++|++||+++...+...+.|+.. .++++++++||+|++|. .|.++++++.|+.||+|+++||+|||
T Consensus 216 ~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~i 295 (386)
T PLN03139 216 QRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAI 295 (386)
T ss_pred HHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCch
Confidence 999999999999998864443344556654 48999999999999983 67889999999999999999999999
Q ss_pred -ChhhchhhhcCCCceeeeec
Q psy16115 199 -NTEIDVNSLRTPDLTWEKVR 218 (258)
Q Consensus 199 -~~~~~~~~l~~~~i~~~~~~ 218 (258)
|+++++++|++|+|...+..
T Consensus 296 VDe~AL~~AL~sG~l~GAaLD 316 (386)
T PLN03139 296 MDTQAVADACSSGHIGGYGGD 316 (386)
T ss_pred hhHHHHHHHHHcCCceEEEEc
Confidence 99999999999999766653
No 9
>PLN02306 hydroxypyruvate reductase
Probab=99.91 E-value=5.5e-24 Score=196.14 Aligned_cols=197 Identities=16% Similarity=0.192 Sum_probs=144.2
Q ss_pred CCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHH
Q psy16115 45 RYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGC 124 (258)
Q Consensus 45 ~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~ 124 (258)
+.++.|++.|+..+.++||+++.+++...|++...... .+.|.|...... ...+.++.|+||||+|+|.||+.+
T Consensus 107 ~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~----~~~g~w~~~~~~--~~~g~~L~gktvGIiG~G~IG~~v 180 (386)
T PLN02306 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEF----MRAGLYEGWLPH--LFVGNLLKGQTVGVIGAGRIGSAY 180 (386)
T ss_pred HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHH----HHcCCCcccccc--ccCCcCCCCCEEEEECCCHHHHHH
Confidence 34899999999999999999999999999998654332 223334211000 012456899999999999999999
Q ss_pred HHHHH-hCCCEEEEEeCChhhHHHH--HhCC------------Cc-ccCHHHHHHhCCeeeec----cCccccccHHHHh
Q psy16115 125 CQSLK-GLGCVIYITEIDPICALQA--CMDG------------FS-VVKLNEVIRTVDIVVTA----TGNKNVVTREHMD 184 (258)
Q Consensus 125 a~~l~-~~G~~Vi~~d~~~~~~~~a--~~~g------------~~-~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~ 184 (258)
|++++ +|||+|++||+++...... ...+ .. ..++++++++||+|++| ..|.++|+++.|+
T Consensus 181 A~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~ 260 (386)
T PLN02306 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLA 260 (386)
T ss_pred HHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHH
Confidence 99985 9999999999876422110 1111 12 24899999999999997 3788999999999
Q ss_pred cCCCCcEEEecCCC---ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHH
Q psy16115 185 KMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLE 250 (258)
Q Consensus 185 ~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~ 250 (258)
+||+|+++||+||| |+++++++|++|++...++..+..+ +.+.+++-....+ +-+||++.++.
T Consensus 261 ~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~E-P~~~~~L~~~pNV--ilTPHiag~T~ 326 (386)
T PLN02306 261 LMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDE-PYMKPGLADMKNA--VVVPHIASASK 326 (386)
T ss_pred hCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCC-CCCcchHhhCCCE--EECCccccCcH
Confidence 99999999999999 9999999999999977666433322 2233334333322 23688876553
No 10
>PRK07574 formate dehydrogenase; Provisional
Probab=99.91 E-value=4e-24 Score=196.73 Aligned_cols=165 Identities=15% Similarity=0.162 Sum_probs=135.1
Q ss_pred CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115 46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC 125 (258)
Q Consensus 46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a 125 (258)
.++.|+++|+..+.++||+++.+++...|++...... .+.|.|...... ..+.++.|++|||+|+|.||+.+|
T Consensus 136 ~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~----~~~g~W~~~~~~---~~~~~L~gktVGIvG~G~IG~~vA 208 (385)
T PRK07574 136 HGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQ----AVEGGWNIADCV---SRSYDLEGMTVGIVGAGRIGLAVL 208 (385)
T ss_pred CCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHH----HHhCCCCccccc---ccceecCCCEEEEECCCHHHHHHH
Confidence 3899999999999999999999999999998654322 244556422100 113568999999999999999999
Q ss_pred HHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC--
Q psy16115 126 QSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS-- 198 (258)
Q Consensus 126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~-- 198 (258)
++|+.||++|++||+++.........++. ..++++++++||+|++|. .|.++++++.|+.||+|+++||+||+
T Consensus 209 ~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~i 288 (385)
T PRK07574 209 RRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKI 288 (385)
T ss_pred HHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCch
Confidence 99999999999999986433333345655 468999999999999983 67899999999999999999999999
Q ss_pred -ChhhchhhhcCCCceeeee
Q psy16115 199 -NTEIDVNSLRTPDLTWEKV 217 (258)
Q Consensus 199 -~~~~~~~~l~~~~i~~~~~ 217 (258)
|+++++++|++|+|...+.
T Consensus 289 VDe~AL~~AL~sG~i~GAaL 308 (385)
T PRK07574 289 VDRDAVVRALESGHLAGYAG 308 (385)
T ss_pred hhHHHHHHHHHhCCccEEEE
Confidence 9999999999999976655
No 11
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.91 E-value=8.1e-24 Score=196.87 Aligned_cols=190 Identities=19% Similarity=0.263 Sum_probs=144.9
Q ss_pred CCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHH
Q psy16115 45 RYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGC 124 (258)
Q Consensus 45 ~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~ 124 (258)
+.++.|++.|+..+.++||+++.+++...|++...... .+.|.|.... ..+.++.|+|+||+|+|.||+.+
T Consensus 96 ~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~----~~~g~w~~~~-----~~~~~L~gktvGIiG~G~IG~~v 166 (409)
T PRK11790 96 KRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAK----AHRGGWNKSA-----AGSFEVRGKTLGIVGYGHIGTQL 166 (409)
T ss_pred hCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHH----HHcCcccccc-----cCcccCCCCEEEEECCCHHHHHH
Confidence 34899999999999999999999999999998764432 3445664321 12457899999999999999999
Q ss_pred HHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC-
Q psy16115 125 CQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS- 198 (258)
Q Consensus 125 a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~- 198 (258)
|+++++|||+|++||+++... ..++. ..++++++++||+|++| ..|.++++++.|+.||+|+++||+|||
T Consensus 167 A~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 242 (409)
T PRK11790 167 SVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGT 242 (409)
T ss_pred HHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCc
Confidence 999999999999999864321 12333 34899999999999998 368899999999999999999999999
Q ss_pred --ChhhchhhhcCCCceeeeeccCcceeecCC-----CccCCCceeEEecCCChhHHHH
Q psy16115 199 --NTEIDVNSLRTPDLTWEKVRSQVDHVIWPD-----VNLKNNTVIDLFRKPKSRLYLE 250 (258)
Q Consensus 199 --~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~-----~~l~~~~~~~l~~~~~~~~~~~ 250 (258)
|+++++++|++|++...++..+..+ +.+. +.+-+...+ +-+||.+.+..
T Consensus 243 ~vde~aL~~aL~~g~i~gaalDVf~~E-P~~~~~~~~~pL~~~~nv--ilTPHia~~t~ 298 (409)
T PRK11790 243 VVDIDALADALKSGHLAGAAIDVFPVE-PKSNGDPFESPLRGLDNV--ILTPHIGGSTQ 298 (409)
T ss_pred ccCHHHHHHHHHcCCceEEEEcCCCCC-CCCccccccchhhcCCCE--EECCcCCCCHH
Confidence 9999999999999976665433221 2221 223333332 23688876654
No 12
>KOG0068|consensus
Probab=99.90 E-value=2.5e-24 Score=189.72 Aligned_cols=168 Identities=17% Similarity=0.191 Sum_probs=143.7
Q ss_pred CCCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHH
Q psy16115 44 GRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKG 123 (258)
Q Consensus 44 ~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~ 123 (258)
.++++-|.|.|.+.+.++||+.+.+++.+.|++.+... ..+.|.|... ...+.++.|||++|+|+|+||..
T Consensus 90 te~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~----s~k~g~wnr~-----~~~G~el~GKTLgvlG~GrIGse 160 (406)
T KOG0068|consen 90 TENGILVVNTPTANSRSAAELTIGLILSLARQIGQASA----SMKEGKWNRV-----KYLGWELRGKTLGVLGLGRIGSE 160 (406)
T ss_pred HhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhhe----eeecCceeec-----ceeeeEEeccEEEEeecccchHH
Confidence 46699999999999999999999999999998876433 3456777432 22356799999999999999999
Q ss_pred HHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC-
Q psy16115 124 CCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS- 198 (258)
Q Consensus 124 ~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~- 198 (258)
+|.+++.+|++|+.||+-... ..+...|++..+++|++..||++.+| +.|.++++.+.|..||+|.++||++||
T Consensus 161 VA~r~k~~gm~vI~~dpi~~~-~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGG 239 (406)
T KOG0068|consen 161 VAVRAKAMGMHVIGYDPITPM-ALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGG 239 (406)
T ss_pred HHHHHHhcCceEEeecCCCch-HHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCc
Confidence 999999999999999875443 34667899999999999999999998 478899999999999999999999999
Q ss_pred --ChhhchhhhcCCCceeeeeccCc
Q psy16115 199 --NTEIDVNSLRTPDLTWEKVRSQV 221 (258)
Q Consensus 199 --~~~~~~~~l~~~~i~~~~~~~~~ 221 (258)
|++++++++++|++.......|+
T Consensus 240 vVDe~ALv~Al~sG~vaGaAlDVy~ 264 (406)
T KOG0068|consen 240 VVDEPALVRALDSGQVAGAALDVYP 264 (406)
T ss_pred eechHHHHHHHhcCcccceeeeccc
Confidence 99999999999999776665444
No 13
>PLN02928 oxidoreductase family protein
Probab=99.90 E-value=1.7e-23 Score=190.98 Aligned_cols=191 Identities=18% Similarity=0.207 Sum_probs=141.7
Q ss_pred CCCceEECChh---hhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHH
Q psy16115 46 YKSDVYLLPKK---MDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGK 122 (258)
Q Consensus 46 ~~~~V~~lP~~---~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~ 122 (258)
.++.|++.|++ ...++||+++.+++...|++..... ..+.|.|.. ..+.++.|+|+||+|+|.||+
T Consensus 104 ~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~----~~~~~~w~~-------~~~~~l~gktvGIiG~G~IG~ 172 (347)
T PLN02928 104 HGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQI----SLKARRLGE-------PIGDTLFGKTVFILGYGAIGI 172 (347)
T ss_pred CCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHH----HHHcCCccc-------ccccCCCCCEEEEECCCHHHH
Confidence 38899999985 5789999999998888888754332 223444532 113468999999999999999
Q ss_pred HHHHHHHhCCCEEEEEeCChhhHHHH------------HhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcC
Q psy16115 123 GCCQSLKGLGCVIYITEIDPICALQA------------CMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKM 186 (258)
Q Consensus 123 ~~a~~l~~~G~~Vi~~d~~~~~~~~a------------~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~ 186 (258)
.+|++|++||++|++||++..+.... ...+....++++++++||+|++| .+|.++++++.|+.|
T Consensus 173 ~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~M 252 (347)
T PLN02928 173 ELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSM 252 (347)
T ss_pred HHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcC
Confidence 99999999999999999874332111 00112456899999999999998 368899999999999
Q ss_pred CCCcEEEecCCC---ChhhchhhhcCCCceeeeeccCcceeec-CCCccCCCceeEEecCCChhHHHH
Q psy16115 187 KNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKVRSQVDHVIW-PDVNLKNNTVIDLFRKPKSRLYLE 250 (258)
Q Consensus 187 k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~~~~~~~~~ 250 (258)
|+|++|||+||| |+++++++|++|+|...++..+..+ ++ +.+++-+...+ +-+||++.++.
T Consensus 253 k~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~E-P~~~~~pL~~~~nv--iiTPHia~~t~ 317 (347)
T PLN02928 253 KKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSE-PFDPDDPILKHPNV--IITPHVAGVTE 317 (347)
T ss_pred CCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCC-CCCCCChhhcCCCE--EECCcCCCChH
Confidence 999999999999 9999999999999976665433222 22 22333333332 23688876654
No 14
>KOG0069|consensus
Probab=99.90 E-value=1.2e-23 Score=188.29 Aligned_cols=194 Identities=20% Similarity=0.269 Sum_probs=152.6
Q ss_pred CCCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHH
Q psy16115 44 GRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKG 123 (258)
Q Consensus 44 ~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~ 123 (258)
+++++.|.++|+..++++|++++..++..+|++.+.+.. .+.|.|. .. .....+.++.||||||+|+|.||+.
T Consensus 104 ~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~----~~~g~w~-~~--~~~~~g~~~~gK~vgilG~G~IG~~ 176 (336)
T KOG0069|consen 104 RKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEM----VRNGGWG-WA--GGWPLGYDLEGKTVGILGLGRIGKA 176 (336)
T ss_pred HhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhh----hhcCCcc-cc--CCccccccccCCEEEEecCcHHHHH
Confidence 456999999999999999999999899999998875532 3455551 11 1112255689999999999999999
Q ss_pred HHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC-
Q psy16115 124 CCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS- 198 (258)
Q Consensus 124 ~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~- 198 (258)
+|++|++||+.+.++.|++.+.+.+.+.+....++++.+.++|+|++| ..|.+++|++.|.+||+|+++||+|||
T Consensus 177 ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~ 256 (336)
T KOG0069|consen 177 IAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGA 256 (336)
T ss_pred HHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccc
Confidence 999999999778888888887777777778889999999999999997 368899999999999999999999999
Q ss_pred --ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhH
Q psy16115 199 --NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRL 247 (258)
Q Consensus 199 --~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 247 (258)
|+++++++|++|++...+..-.-.+-..+..|+...-++ -.||...
T Consensus 257 iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv---~~PHigs 304 (336)
T KOG0069|consen 257 IIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVV---ILPHIGS 304 (336)
T ss_pred cccHHHHHHHHhcCCcccccccccCCCCCCCcchhccccee---Eeccccc
Confidence 999999999999997766643222213334444433333 1366544
No 15
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.90 E-value=1.8e-23 Score=173.98 Aligned_cols=118 Identities=23% Similarity=0.358 Sum_probs=101.1
Q ss_pred CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCcccccc
Q psy16115 104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVT 179 (258)
Q Consensus 104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~ 179 (258)
+.++.|+||||+|+|.||+.+|+++++||++|++||++..........++...++++++++||+|++| ..|.++++
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~ 110 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLIN 110 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBS
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeee
Confidence 45789999999999999999999999999999999999876554556777888999999999999997 36789999
Q ss_pred HHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCceeeeeccCc
Q psy16115 180 REHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKVRSQV 221 (258)
Q Consensus 180 ~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~~~~~ 221 (258)
++.|+.||+|+++||+||| |+++++++|++|++....+....
T Consensus 111 ~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~ 155 (178)
T PF02826_consen 111 AEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFE 155 (178)
T ss_dssp HHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-S
T ss_pred eeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCC
Confidence 9999999999999999999 99999999999999877664433
No 16
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.89 E-value=7.4e-23 Score=196.07 Aligned_cols=192 Identities=16% Similarity=0.155 Sum_probs=148.8
Q ss_pred CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115 46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC 125 (258)
Q Consensus 46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a 125 (258)
.++.|++.|+..+.++||+++.+++...|++..... ..+.|.|... ...+.++.||||||+|+|.||+.+|
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~----~~~~g~W~~~-----~~~g~~l~gktvgIiG~G~IG~~vA 154 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADA----SLKEGEWDRK-----AFMGTELYGKTLGVIGLGRIGSIVA 154 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHH----HHHcCCcccc-----ccCccccCCCEEEEECCCHHHHHHH
Confidence 389999999999999999999999999998865433 2345566421 1124578999999999999999999
Q ss_pred HHHHhCCCEEEEEeCChhhHHHHHhCCCccc-CHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC--
Q psy16115 126 QSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS-- 198 (258)
Q Consensus 126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~-- 198 (258)
++|++||++|++||++... ..+...++... ++++++++||+|++| ..|.++++++.|+.||+|+++||+|||
T Consensus 155 ~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~ 233 (525)
T TIGR01327 155 KRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGI 233 (525)
T ss_pred HHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCce
Confidence 9999999999999986332 23445676644 799999999999998 368899999999999999999999999
Q ss_pred -ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHH
Q psy16115 199 -NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLE 250 (258)
Q Consensus 199 -~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~ 250 (258)
|+++++++|++|++...++..+..+ +.+.+++-....+ +-+||.+.++.
T Consensus 234 vde~aL~~aL~~g~i~gAaLDVf~~E-P~~~~pL~~~~nv--i~TPHia~~t~ 283 (525)
T TIGR01327 234 IDEAALYEALEEGHVRAAALDVFEKE-PPTDNPLFDLDNV--IATPHLGASTR 283 (525)
T ss_pred eCHHHHHHHHHcCCeeEEEEecCCCC-CCCCChhhcCCCe--EECCCccccHH
Confidence 9999999999999977666433222 2334444433333 33688876654
No 17
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.89 E-value=9e-23 Score=195.51 Aligned_cols=192 Identities=17% Similarity=0.165 Sum_probs=149.8
Q ss_pred CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115 46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC 125 (258)
Q Consensus 46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a 125 (258)
.++.|++.|+..+.++||+++.+++...|++..... ..+.|.|.... ..+.++.|+|+||+|+|.||+.+|
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~----~~~~g~W~~~~-----~~g~~l~gktvgIiG~G~IG~~vA 156 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHA----SLKAGKWERKK-----FMGVELYGKTLGIIGLGRIGSEVA 156 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHH----HHHcCCCCccC-----ccccccCCCEEEEECCCHHHHHHH
Confidence 489999999999999999999999999998875433 23455664311 124568999999999999999999
Q ss_pred HHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---
Q psy16115 126 QSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS--- 198 (258)
Q Consensus 126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~--- 198 (258)
+++++||++|++||++... ..+...++...++++++++||+|++|. .|.++++++.|+.||+|+++||+|||
T Consensus 157 ~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~v 235 (526)
T PRK13581 157 KRAKAFGMKVIAYDPYISP-ERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGII 235 (526)
T ss_pred HHHHhCCCEEEEECCCCCh-hHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCcee
Confidence 9999999999999986542 234456777779999999999999983 67899999999999999999999999
Q ss_pred ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHH
Q psy16115 199 NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLE 250 (258)
Q Consensus 199 ~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~ 250 (258)
|+++++++|++|++...++..+..+ +.+.+++-+...+ +-+||.+.++.
T Consensus 236 de~aL~~aL~~g~i~gAaLDVf~~E-P~~~~pL~~~~nv--ilTPHia~~t~ 284 (526)
T PRK13581 236 DEAALAEALKSGKVAGAALDVFEKE-PPTDSPLFELPNV--VVTPHLGASTA 284 (526)
T ss_pred CHHHHHHHHhcCCeeEEEEecCCCC-CCCCchhhcCCCe--eEcCccccchH
Confidence 9999999999999976666433221 2334444443333 33688876554
No 18
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.89 E-value=2.1e-22 Score=188.00 Aligned_cols=172 Identities=42% Similarity=0.684 Sum_probs=143.5
Q ss_pred CCCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHH
Q psy16115 44 GRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKG 123 (258)
Q Consensus 44 ~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~ 123 (258)
++.++.|+++|+..+.+++++.+..+.... .++.+..+..+.|++|+|+|+|.||+.
T Consensus 212 g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~-----------------------d~~~R~~~~~LaGKtVgVIG~G~IGr~ 268 (476)
T PTZ00075 212 GELLFPAINVNDSVTKSKFDNIYGCRHSLI-----------------------DGIFRATDVMIAGKTVVVCGYGDVGKG 268 (476)
T ss_pred CCCCceEEEeCCcchHHHHHHHHHHHHHHH-----------------------HHHHHhcCCCcCCCEEEEECCCHHHHH
Confidence 667899999999999999998654432222 223333345689999999999999999
Q ss_pred HHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHHhcCCCCcEEEecCCCChhhc
Q psy16115 124 CCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEID 203 (258)
Q Consensus 124 ~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~ 203 (258)
+|++++.+|++|+++|+++.+...+...|++..+++++++.+|+|++|+++.++++++.|+.||+|++++|+||++.+++
T Consensus 269 vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~d~Ei~ 348 (476)
T PTZ00075 269 CAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFDNEIQ 348 (476)
T ss_pred HHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCCchHHh
Confidence 99999999999999999988876666778888889999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCC-ceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115 204 VNSLRTPD-LTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP 243 (258)
Q Consensus 204 ~~~l~~~~-i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 243 (258)
+++|+.+. +++...++.++.|.++++ .-+.|++.+
T Consensus 349 i~aL~~~~~vdv~evep~v~~~~~~~g-----~~i~llaeG 384 (476)
T PTZ00075 349 VAELEAYPGIEIVEIKPQVDRYTFPDG-----KGIILLAEG 384 (476)
T ss_pred HHHHHhcCCceeecccCCCCeEEeCCC-----CEEEEEeCC
Confidence 99988755 888888899988887643 444454443
No 19
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.89 E-value=4.8e-23 Score=167.01 Aligned_cols=148 Identities=47% Similarity=0.761 Sum_probs=121.0
Q ss_pred CCcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec
Q psy16115 92 FKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA 171 (258)
Q Consensus 92 ~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~ 171 (258)
+++.+.++++..+..+.||+++|+|+|.+|+.+|+.|+++|++|+++|++|.+..+|..+|++..+++++++.+|+++.+
T Consensus 6 g~S~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 6 GQSLVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTA 85 (162)
T ss_dssp HHHHHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-
T ss_pred chhHHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEEC
Confidence 34455666666677789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCC
Q psy16115 172 TGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPK 244 (258)
Q Consensus 172 ~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 244 (258)
||...++..+.|+.||+|+++.|+|..|.|++++.|+...+....+++++++|.+|. +.-+.|++.++
T Consensus 86 TG~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~~~~~~~~v~~~v~~y~l~~-----G~~i~lLa~Gr 153 (162)
T PF00670_consen 86 TGNKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEANAVEREEVRPQVDRYTLPD-----GRRIILLAEGR 153 (162)
T ss_dssp SSSSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHTCTSEEEEEETTEEEEEETT-----SEEEEEEGGGS
T ss_pred CCCccccCHHHHHHhcCCeEEeccCcCceeEeeccccccCcEEEEcCCCeeEEEeCC-----CCEEEEEECCC
Confidence 999999999999999999999999999999999999988888899999999999765 45666776554
No 20
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=99.87 E-value=6.3e-22 Score=181.53 Aligned_cols=170 Identities=14% Similarity=0.108 Sum_probs=129.4
Q ss_pred CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115 46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC 125 (258)
Q Consensus 46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a 125 (258)
.++.+.+.|+..+.+|||+++..++...++ .+.++.|+||||||+|.||+.+|
T Consensus 80 ~gI~v~napg~na~aVAE~~~~~lL~l~r~---------------------------~g~~L~gktvGIIG~G~IG~~vA 132 (378)
T PRK15438 80 AGIGFSAAPGCNAIAVVEYVFSSLLMLAER---------------------------DGFSLHDRTVGIVGVGNVGRRLQ 132 (378)
T ss_pred CCCEEEECCCcCchHHHHHHHHHHHHHhcc---------------------------CCCCcCCCEEEEECcCHHHHHHH
Confidence 389999999999999999987665533221 12357999999999999999999
Q ss_pred HHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc--------CccccccHHHHhcCCCCcEEEecCC
Q psy16115 126 QSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT--------GNKNVVTREHMDKMKNGCVVCNMGH 197 (258)
Q Consensus 126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~--------~~~~~i~~~~l~~~k~g~~ivnvg~ 197 (258)
++++++|++|++||+.... ......+.++++++++||+|++|+ .|.++++++.|+.||+|+++||+||
T Consensus 133 ~~l~a~G~~V~~~dp~~~~----~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aR 208 (378)
T PRK15438 133 ARLEALGIKTLLCDPPRAD----RGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACR 208 (378)
T ss_pred HHHHHCCCEEEEECCcccc----cccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCC
Confidence 9999999999999864321 112234568999999999999973 2789999999999999999999999
Q ss_pred C---ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHH
Q psy16115 198 S---NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLE 250 (258)
Q Consensus 198 ~---~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~ 250 (258)
| |+++++++|++|++....+.....+ +.+...+-+... +.+||++-|+.
T Consensus 209 G~vVDe~AL~~aL~~g~~~ga~LDV~e~E-P~~~~~Ll~~~~---i~TPHiAg~s~ 260 (378)
T PRK15438 209 GAVVDNTALLTCLNEGQKLSVVLDVWEGE-PELNVELLKKVD---IGTPHIAGYTL 260 (378)
T ss_pred chhcCHHHHHHHHHhCCCcEEEEecCCCC-CCCchhhhhcCC---EECCccCcCcH
Confidence 9 9999999999998865554322211 122222322221 45799987653
No 21
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.86 E-value=5.5e-22 Score=178.50 Aligned_cols=160 Identities=12% Similarity=0.170 Sum_probs=127.5
Q ss_pred CCceEECCh-hhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115 47 KSDVYLLPK-KMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC 125 (258)
Q Consensus 47 ~~~V~~lP~-~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a 125 (258)
++.|++.++ .....+||+++.+++...|++..... ..+.|.|... ...++.|+||||+|+|.||+.+|
T Consensus 84 ~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~----~~~~~~w~~~-------~~~~l~g~tvgIvG~G~IG~~vA 152 (312)
T PRK15469 84 SVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQA----LQNSSHWQPL-------PEYHREDFTIGILGAGVLGSKVA 152 (312)
T ss_pred CceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHH----HHHhCCcCCC-------CCCCcCCCEEEEECCCHHHHHHH
Confidence 788898876 46789999999999999898865432 2344556421 12357999999999999999999
Q ss_pred HHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC---
Q psy16115 126 QSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS--- 198 (258)
Q Consensus 126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~--- 198 (258)
++|++||++|++||+++.+.... ..-....++++++++||+|++| ..|.++++++.|+.||+|+++||+|||
T Consensus 153 ~~l~afG~~V~~~~~~~~~~~~~-~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vV 231 (312)
T PRK15469 153 QSLQTWGFPLRCWSRSRKSWPGV-QSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHV 231 (312)
T ss_pred HHHHHCCCEEEEEeCCCCCCCCc-eeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCcccc
Confidence 99999999999999876432110 0011245789999999999998 367789999999999999999999999
Q ss_pred ChhhchhhhcCCCceeeeec
Q psy16115 199 NTEIDVNSLRTPDLTWEKVR 218 (258)
Q Consensus 199 ~~~~~~~~l~~~~i~~~~~~ 218 (258)
|+++++++|++|++...++.
T Consensus 232 de~aL~~aL~~g~i~gaalD 251 (312)
T PRK15469 232 VEDDLLAALDSGKVKGAMLD 251 (312)
T ss_pred CHHHHHHHHhcCCeeeEEec
Confidence 99999999999999766553
No 22
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.86 E-value=2.7e-21 Score=173.24 Aligned_cols=154 Identities=18% Similarity=0.262 Sum_probs=124.8
Q ss_pred CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115 47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ 126 (258)
Q Consensus 47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~ 126 (258)
++.+.+ ++..+.++||+++.+++...|++..... ..+.|.|... .+.++.|+||||+|+|.||+.+|+
T Consensus 72 ~i~~~~-~g~~~~~VAE~~l~l~L~l~R~i~~~~~----~~~~g~w~~~-------~~~~L~gktvgIiG~G~IG~~vA~ 139 (303)
T PRK06436 72 VVLCSN-AGAYSISVAEHAFALLLAWAKNICENNY----NMKNGNFKQS-------PTKLLYNKSLGILGYGGIGRRVAL 139 (303)
T ss_pred CeEEEc-CCCCcHHHHHHHHHHHHHHHcChHHHHH----HHHcCCCCCC-------CCCCCCCCEEEEECcCHHHHHHHH
Confidence 444444 5667889999999999999998875432 2345666431 134689999999999999999999
Q ss_pred HHHhCCCEEEEEeCChhhHHHHHhCCCc--ccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC--
Q psy16115 127 SLKGLGCVIYITEIDPICALQACMDGFS--VVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS-- 198 (258)
Q Consensus 127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~--~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~-- 198 (258)
++++||++|++||++... .+.. ..++++++++||+|++| ..|.++++++.|+.||+|+++||+||+
T Consensus 140 ~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~ 213 (303)
T PRK06436 140 LAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADV 213 (303)
T ss_pred HHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccc
Confidence 999999999999987532 1221 45899999999999998 368899999999999999999999999
Q ss_pred -ChhhchhhhcCCCceeeeec
Q psy16115 199 -NTEIDVNSLRTPDLTWEKVR 218 (258)
Q Consensus 199 -~~~~~~~~l~~~~i~~~~~~ 218 (258)
|++++.++|+++++....+.
T Consensus 214 vd~~aL~~aL~~g~i~~a~lD 234 (303)
T PRK06436 214 VDKNDMLNFLRNHNDKYYLSD 234 (303)
T ss_pred cCHHHHHHHHHcCCceEEEEc
Confidence 89999999999998765553
No 23
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.86 E-value=2.5e-21 Score=178.04 Aligned_cols=171 Identities=14% Similarity=0.118 Sum_probs=130.2
Q ss_pred CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115 46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC 125 (258)
Q Consensus 46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a 125 (258)
.++.+.+.|+..+.+|||+++..++...+. .+.++.|+||||||+|.||+.++
T Consensus 80 ~gI~v~napg~na~aVAE~v~~~lL~l~r~---------------------------~g~~l~gktvGIIG~G~IG~~va 132 (381)
T PRK00257 80 AGITWSSAPGCNARGVVDYVLGSLLTLAER---------------------------EGVDLAERTYGVVGAGHVGGRLV 132 (381)
T ss_pred CCCEEEECCCcChHHHHHHHHHHHHHHhcc---------------------------cCCCcCcCEEEEECCCHHHHHHH
Confidence 389999999999999999987665533221 13457999999999999999999
Q ss_pred HHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc--------CccccccHHHHhcCCCCcEEEecCC
Q psy16115 126 QSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT--------GNKNVVTREHMDKMKNGCVVCNMGH 197 (258)
Q Consensus 126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~--------~~~~~i~~~~l~~~k~g~~ivnvg~ 197 (258)
++++++|++|++||+..... ..+....++++++++||+|++|. .|.++++++.|+.||+|+++||+||
T Consensus 133 ~~l~a~G~~V~~~Dp~~~~~----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aR 208 (381)
T PRK00257 133 RVLRGLGWKVLVCDPPRQEA----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASR 208 (381)
T ss_pred HHHHHCCCEEEEECCccccc----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCC
Confidence 99999999999998754321 12345678999999999999982 3779999999999999999999999
Q ss_pred C---ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHHH
Q psy16115 198 S---NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLEI 251 (258)
Q Consensus 198 ~---~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ 251 (258)
| |+++++++|++|++....+.....+ +.+...+-+. -.+.+||++.|+.=
T Consensus 209 G~vVde~AL~~aL~~g~i~~a~LDV~e~E-P~~~~~L~~~---nvi~TPHiAg~s~e 261 (381)
T PRK00257 209 GAVVDNQALREALLSGEDLDAVLDVWEGE-PQIDLELADL---CTIATPHIAGYSLD 261 (381)
T ss_pred CcccCHHHHHHHHHhCCCcEEEEeCCCCC-CCCChhhhhC---CEEEcCccccCCHH
Confidence 9 8999999999998865544222111 1222222222 23457999987653
No 24
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.86 E-value=2.6e-21 Score=175.51 Aligned_cols=161 Identities=16% Similarity=0.232 Sum_probs=129.0
Q ss_pred CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115 46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC 125 (258)
Q Consensus 46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a 125 (258)
.++.|+++|++.+.++||+++.+++...|++...... .+.|.|. |.. ...+.++.|++|||||+|.||+.+|
T Consensus 91 ~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~----~~~~~~~--w~~--~~~~~~l~g~~VgIIG~G~IG~~vA 162 (330)
T PRK12480 91 HNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERR----VQAHDFT--WQA--EIMSKPVKNMTVAIIGTGRIGAATA 162 (330)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHH----HHhCCcc--ccc--ccCccccCCCEEEEECCCHHHHHHH
Confidence 4899999999999999999999999888887653332 1223321 100 0123568999999999999999999
Q ss_pred HHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC--
Q psy16115 126 QSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS-- 198 (258)
Q Consensus 126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~-- 198 (258)
++|+.+|++|++||+++...... .. ..++++++++||+|++|. .+.++++++.++.||+|+++||+|||
T Consensus 163 ~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~ 238 (330)
T PRK12480 163 KIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAV 238 (330)
T ss_pred HHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccc
Confidence 99999999999999987543211 12 247899999999999983 35688999999999999999999999
Q ss_pred -ChhhchhhhcCCCceeeeec
Q psy16115 199 -NTEIDVNSLRTPDLTWEKVR 218 (258)
Q Consensus 199 -~~~~~~~~l~~~~i~~~~~~ 218 (258)
|+++++++|++|++...++.
T Consensus 239 vd~~aL~~aL~~g~i~gaalD 259 (330)
T PRK12480 239 INTPDLIAAVNDGTLLGAAID 259 (330)
T ss_pred cCHHHHHHHHHcCCeeEEEEe
Confidence 99999999999999766553
No 25
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.86 E-value=1.7e-21 Score=180.40 Aligned_cols=175 Identities=41% Similarity=0.680 Sum_probs=148.2
Q ss_pred cCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc
Q psy16115 75 ELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS 154 (258)
Q Consensus 75 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~ 154 (258)
+++.+..+...+.+.|..+..+.++.+..+..+.|++|+|+|+|+||+.+++.++.+|++|+++|+++.++..|...|++
T Consensus 168 ~vnds~~K~~~dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~ 247 (413)
T cd00401 168 NVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYE 247 (413)
T ss_pred EecchhhcccccccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCE
Confidence 34455556666677777777788888877777899999999999999999999999999999999999999899999998
Q ss_pred ccCHHHHHHhCCeeeeccCccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCC
Q psy16115 155 VVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNN 234 (258)
Q Consensus 155 ~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~ 234 (258)
..++++.++.+|+|++|+++.++++.+.++.||+|++++|+|+.+.+++...+..+++++.+++.++.+|.+++ +
T Consensus 248 ~~~~~e~v~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~~el~i~g~~~~~~~~~~~~-----g 322 (413)
T cd00401 248 VMTMEEAVKEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKENAVEVVNIKPQVDRYELPD-----G 322 (413)
T ss_pred EccHHHHHcCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHhhccEEEEccCCcceEEcCC-----c
Confidence 77788888999999999999999986679999999999999999888888999999999999998887666432 3
Q ss_pred ceeEEecCCCh-hHHHHHhhh
Q psy16115 235 TVIDLFRKPKS-RLYLEILQT 254 (258)
Q Consensus 235 ~~~~l~~~~~~-~~~~~~~~~ 254 (258)
..+.|++.++. ++...++|+
T Consensus 323 ~aI~LLa~Grlvnl~~~~gH~ 343 (413)
T cd00401 323 RRIILLAEGRLVNLGCATGHP 343 (413)
T ss_pred chhhhhhCcCCCCCcccCCCc
Confidence 55666677766 667677776
No 26
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=99.85 E-value=4.3e-21 Score=170.76 Aligned_cols=154 Identities=43% Similarity=0.693 Sum_probs=144.6
Q ss_pred cCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc
Q psy16115 75 ELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS 154 (258)
Q Consensus 75 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~ 154 (258)
+++.+..++..+++.|.-++.++++.|.++.-++||+++|.|+|.+|+.+|++++..|++|++++.+|-+..+|..+|++
T Consensus 175 ~VNDs~tK~~FDNrYGtgqS~~DgI~RaTn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~ 254 (420)
T COG0499 175 NVNDSVTKSLFDNRYGTGQSLLDGILRATNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFR 254 (420)
T ss_pred eecchhhhcccccccccchhHHHHHHhhhceeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcE
Confidence 45667778888899999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHhCCeeeeccCccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCC
Q psy16115 155 VVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPD 228 (258)
Q Consensus 155 ~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~ 228 (258)
+...++..+.+|+++.+||+.+++..+.|..||+|+++.|.|..|.|+++..|+.....+...++++++|.+++
T Consensus 255 V~~m~~Aa~~gDifiT~TGnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~~V~ey~l~~ 328 (420)
T COG0499 255 VMTMEEAAKTGDIFVTATGNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVRPQVDEYELPD 328 (420)
T ss_pred EEEhHHhhhcCCEEEEccCCcCccCHHHHHhccCCeEEecccccceeccHHHHHHhhhhHhccccCceEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999987788889999999999874
No 27
>PLN02494 adenosylhomocysteinase
Probab=99.84 E-value=3.5e-20 Score=172.76 Aligned_cols=154 Identities=44% Similarity=0.748 Sum_probs=132.5
Q ss_pred cCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc
Q psy16115 75 ELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS 154 (258)
Q Consensus 75 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~ 154 (258)
+++.+..+...+.+.|.-+..+.++.+..+..+.|++|+|+|+|+||+.+|+.++.+|++|+++|+++.+...+...|+.
T Consensus 220 ~vnds~~K~~fDn~yGtgqS~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~ 299 (477)
T PLN02494 220 NVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ 299 (477)
T ss_pred EEcChhhhhhhhccccccccHHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe
Confidence 44566677777788888888899998888888899999999999999999999999999999999999887678788888
Q ss_pred ccCHHHHHHhCCeeeeccCccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCC-ceeeeeccCcceeecCC
Q psy16115 155 VVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD-LTWEKVRSQVDHVIWPD 228 (258)
Q Consensus 155 ~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~-i~~~~~~~~~~~~~~~~ 228 (258)
..+++++++.+|++++++++.++++.+.|+.||+|++++|+|+.+.+++..+|..-. +.....++..+.|.+++
T Consensus 300 vv~leEal~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~~~vd~y~~~d 374 (477)
T PLN02494 300 VLTLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPD 374 (477)
T ss_pred eccHHHHHhhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccCCCceEEEcCC
Confidence 778899999999999999999999889999999999999999987777777776542 55556668888888654
No 28
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.84 E-value=1.8e-20 Score=170.21 Aligned_cols=163 Identities=16% Similarity=0.213 Sum_probs=129.5
Q ss_pred CCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHH
Q psy16115 45 RYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGC 124 (258)
Q Consensus 45 ~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~ 124 (258)
+.++.|+++|++.+.++||+++.+++...|++...... .+.|.|. |.. ...+.++.|++|||||+|.||+.+
T Consensus 90 ~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~----~~~~~~~--~~~--~~~~~~l~g~~VgIIG~G~IG~~v 161 (332)
T PRK08605 90 KYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTK----VREHDFR--WEP--PILSRSIKDLKVAVIGTGRIGLAV 161 (332)
T ss_pred HCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHH----HHhCCcc--ccc--ccccceeCCCEEEEECCCHHHHHH
Confidence 34899999999999999999999999999988654322 1233331 111 012456899999999999999999
Q ss_pred HHHH-HhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC
Q psy16115 125 CQSL-KGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 125 a~~l-~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
|++| +++|++|+++|+++..... ..+.. .+++++++++|+|++|. .+.++++.+.++.||+|+++||+|||
T Consensus 162 A~~L~~~~g~~V~~~d~~~~~~~~---~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG 238 (332)
T PRK08605 162 AKIFAKGYGSDVVAYDPFPNAKAA---TYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARG 238 (332)
T ss_pred HHHHHhcCCCEEEEECCCccHhHH---hhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCC
Confidence 9999 7899999999988754321 22333 47999999999999983 46788988899999999999999999
Q ss_pred ---ChhhchhhhcCCCceeeeec
Q psy16115 199 ---NTEIDVNSLRTPDLTWEKVR 218 (258)
Q Consensus 199 ---~~~~~~~~l~~~~i~~~~~~ 218 (258)
++++++++|++|+|...++.
T Consensus 239 ~~vd~~aL~~aL~~g~i~gaalD 261 (332)
T PRK08605 239 SLVDTKALLDALDNGLIKGAALD 261 (332)
T ss_pred cccCHHHHHHHHHhCCeeEEEEe
Confidence 88999999999999766553
No 29
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.82 E-value=5e-20 Score=170.19 Aligned_cols=154 Identities=40% Similarity=0.654 Sum_probs=128.7
Q ss_pred CCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc
Q psy16115 76 LSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV 155 (258)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~ 155 (258)
++.+..+...+++.|.....+.++.+..+..+.|++|+|+|+|+||+.+|+.++.+|++|+++|+++.+...+...|+..
T Consensus 162 vnds~~K~~fDn~yg~g~s~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v 241 (406)
T TIGR00936 162 VNDAYTKSLFDNRYGTGQSTIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRV 241 (406)
T ss_pred ecchhhchhhhcccccchhHHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEe
Confidence 34455566666677776677777777666668999999999999999999999999999999999998877788889887
Q ss_pred cCHHHHHHhCCeeeeccCccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCC
Q psy16115 156 VKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDV 229 (258)
Q Consensus 156 ~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~ 229 (258)
.++++.++++|++|+++++.++++.+.+..||+|++++|+|+++.+++.++|..--......++++++|.++++
T Consensus 242 ~~leeal~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~~~g 315 (406)
T TIGR00936 242 MTMEEAAKIGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYILKDG 315 (406)
T ss_pred CCHHHHHhcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEeCCC
Confidence 78889999999999999999999988999999999999999997777777776533344567788888887664
No 30
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.81 E-value=1.6e-19 Score=167.67 Aligned_cols=136 Identities=50% Similarity=0.901 Sum_probs=119.0
Q ss_pred CcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc
Q psy16115 93 KPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT 172 (258)
Q Consensus 93 ~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~ 172 (258)
...+.++.+..+..+.|++|+|+|+|+||+.+++.|+.+|++|+++|+++.+...+...|++..+++++++.+|+|+.++
T Consensus 196 ~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 196 ESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTAT 275 (425)
T ss_pred hhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECC
Confidence 34455555554556799999999999999999999999999999999999887777777888778899999999999999
Q ss_pred CccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCC
Q psy16115 173 GNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPD 228 (258)
Q Consensus 173 ~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~ 228 (258)
++.++++.+.++.||+|++++|+|+.+.++++++|..-......+++++++|.+++
T Consensus 276 G~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~~~~~~v~~~v~~y~~~~ 331 (425)
T PRK05476 276 GNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEELAVKWREIKPQVDEYTLPD 331 (425)
T ss_pred CCHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhcCcceeecCCCceEEEeCC
Confidence 99999998899999999999999999988999988865556778889999999876
No 31
>KOG1370|consensus
Probab=99.79 E-value=1.1e-18 Score=152.49 Aligned_cols=145 Identities=56% Similarity=0.951 Sum_probs=131.6
Q ss_pred cchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccC
Q psy16115 94 PSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 173 (258)
Q Consensus 94 ~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~ 173 (258)
...++++|.....+.||.++|.|+|.+|..+|+.||.+|++|++.+++|-...+|..+|+++..++|+.+++||++.++|
T Consensus 199 Sl~DgikraTDvM~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtTG 278 (434)
T KOG1370|consen 199 SLLDGIKRATDVMIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTTG 278 (434)
T ss_pred hhhhhhhhhhhheecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEccC
Confidence 33467777777778999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred ccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115 174 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP 243 (258)
Q Consensus 174 ~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 243 (258)
...+|..+.|+.||.++++.|+|..|.|+++..|....+++..+++++|+|.++++ .-|.|++.+
T Consensus 279 c~dii~~~H~~~mk~d~IvCN~Ghfd~EiDv~~L~~~~~~~~~vk~QvD~~~~~~g-----r~iIlLAeG 343 (434)
T KOG1370|consen 279 CKDIITGEHFDQMKNDAIVCNIGHFDTEIDVKWLNTPALTWENVKPQVDRYILPNG-----KHIILLAEG 343 (434)
T ss_pred CcchhhHHHHHhCcCCcEEeccccccceeehhhccCCcceeeecccccceeeccCC-----cEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999996554 445555543
No 32
>KOG0024|consensus
Probab=99.72 E-value=1.3e-17 Score=147.29 Aligned_cols=175 Identities=15% Similarity=0.182 Sum_probs=142.9
Q ss_pred CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115 47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ 126 (258)
Q Consensus 47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~ 126 (258)
...++++|+.++.+.+++. ++++..+++..... + -.|.+|+|+|+|+||.....
T Consensus 134 ~dfc~KLPd~vs~eeGAl~-ePLsV~~HAcr~~~------------------v-------k~Gs~vLV~GAGPIGl~t~l 187 (354)
T KOG0024|consen 134 ADFCYKLPDNVSFEEGALI-EPLSVGVHACRRAG------------------V-------KKGSKVLVLGAGPIGLLTGL 187 (354)
T ss_pred hHheeeCCCCCchhhcccc-cchhhhhhhhhhcC------------------c-------ccCCeEEEECCcHHHHHHHH
Confidence 4578899999999999875 66655544433210 1 27999999999999999999
Q ss_pred HHHhCCC-EEEEEeCChhhHHHHHhCCCccc-------CHHH---HHH------hCCeeeeccCccccccHHHHhcCCCC
Q psy16115 127 SLKGLGC-VIYITEIDPICALQACMDGFSVV-------KLNE---VIR------TVDIVVTATGNKNVVTREHMDKMKNG 189 (258)
Q Consensus 127 ~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~-------~l~e---~~~------~aDvvi~~~~~~~~i~~~~l~~~k~g 189 (258)
.++++|+ +|++.|..+.|++.|++.|++.. ++++ .++ ..|+.|.|++....++ ..+..+|.+
T Consensus 188 ~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~-aai~a~r~g 266 (354)
T KOG0024|consen 188 VAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIR-AAIKATRSG 266 (354)
T ss_pred HHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEccCchHHHH-HHHHHhccC
Confidence 9999998 69999999999999999998642 1233 222 2799999999999897 778889999
Q ss_pred cEEEecCCC--ChhhchhhhcCCCceeeeeccCcc-eeecCCCccCCCceeEEecCCChhHHHHHhhhcCC
Q psy16115 190 CVVCNMGHS--NTEIDVNSLRTPDLTWEKVRSQVD-HVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTCPL 257 (258)
Q Consensus 190 ~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 257 (258)
+.++-+|.+ ..+..+.....+|+++++++.|.. .|+ .++.|+.+++.+....|+|+++|
T Consensus 267 Gt~vlvg~g~~~~~fpi~~v~~kE~~~~g~fry~~~~y~---------~ai~li~sGki~~k~lIT~r~~~ 328 (354)
T KOG0024|consen 267 GTVVLVGMGAEEIQFPIIDVALKEVDLRGSFRYCNGDYP---------TAIELVSSGKIDVKPLITHRYKF 328 (354)
T ss_pred CEEEEeccCCCccccChhhhhhheeeeeeeeeeccccHH---------HHHHHHHcCCcCchhheeccccc
Confidence 999999988 344455566678999999999886 688 89999999999999999999986
No 33
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.48 E-value=1.7e-13 Score=121.16 Aligned_cols=192 Identities=21% Similarity=0.229 Sum_probs=136.8
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.+++..+..+|. |.+ .++-|. |+|.++++...-.++.+ ..++++++..+...+.....+..+|...++ .+.++
T Consensus 76 ~~l~~~I~~lN~-d~~V~GIlvq~Plp~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~ 153 (285)
T PRK14189 76 AELLARIDELNR-DPKIHGILVQLPLPKHIDSHKVIEAIAP-EKDVDGFHVANAGALMTGQPLFRPCTPYGVMKMLESIG 153 (285)
T ss_pred HHHHHHHHHHcC-CCCCCeEEEeCCCCCCCCHHHHHhhcCc-ccCcccCChhhhhHhhCCCCCCcCCCHHHHHHHHHHcC
Confidence 568888888888 323 244443 88899987765555555 458999988777666555555556666653 44567
Q ss_pred cccCCCEEEEEcCchH-HHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 105 VMFGGKQVVLCGYGEV-GKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~I-G~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.++.|++|+|+|.|.+ |+.++.+|...|++|++++.. ..++.+.+++||+|+.++|++++++.
T Consensus 154 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~-------------t~~l~~~~~~ADIVV~avG~~~~i~~--- 217 (285)
T PRK14189 154 IPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK-------------TRDLAAHTRQADIVVAAVGKRNVLTA--- 217 (285)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC-------------CCCHHHHhhhCCEEEEcCCCcCccCH---
Confidence 7899999999999996 999999999999999998642 23577889999999999999999985
Q ss_pred hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115 184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK 242 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 242 (258)
+++|+|+++||+|...... .-.-|.++..........++..++.+.+-|+..|+.+
T Consensus 218 ~~ik~gavVIDVGin~~~~---gkl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~Ll~N 273 (285)
T PRK14189 218 DMVKPGATVIDVGMNRDDA---GKLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLVN 273 (285)
T ss_pred HHcCCCCEEEEccccccCC---CCeeCCccHHHHHhhceEecCCCCCchHHHHHHHHHH
Confidence 5689999999999762110 0011222322333333445666777777777766654
No 34
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.47 E-value=2.5e-13 Score=120.92 Aligned_cols=196 Identities=20% Similarity=0.195 Sum_probs=138.9
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.++++.++.+|. |.+ .++-|. |+|.++++...-.++.+ ..++++++..+...+.....+..+|+..++ .+.++
T Consensus 77 ~~l~~~I~~lN~-D~~V~GIlvqlPLP~~i~~~~i~~~I~p-~KDVDGl~~~N~g~l~~~~~~~~PcTp~aii~lL~~~~ 154 (301)
T PRK14194 77 ARLLALIAELNA-DPSVNGILLQLPLPAHIDEARVLQAINP-LKDVDGFHSENVGGLSQGRDVLTPCTPSGCLRLLEDTC 154 (301)
T ss_pred HHHHHHHHHHcC-CCCCCeEEEeCCCCCCCCHHHHHhccCc-hhccCccChhhhhHHhcCCCCCCCCcHHHHHHHHHHhC
Confidence 568888899988 323 244443 88899988766555555 458999988777666555555556666653 34467
Q ss_pred cccCCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 105 VMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 105 ~~l~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.++.||+|+|||.| .||+.+|.+|...|++|+++++... ++.+.+++||+|+.+.+.++.+.+..
T Consensus 155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~-------------~l~e~~~~ADIVIsavg~~~~v~~~~- 220 (301)
T PRK14194 155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST-------------DAKALCRQADIVVAAVGRPRLIDADW- 220 (301)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC-------------CHHHHHhcCCEEEEecCChhcccHhh-
Confidence 78999999999997 7999999999999999999976432 57888999999999999999998543
Q ss_pred hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115 184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP 243 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 243 (258)
+|+|+++||+|....+..-..---|.++..........++..+|.+.+-|+-+|+.+-
T Consensus 221 --ik~GaiVIDvgin~~~~~g~~kl~GDvdf~~~~~~a~~iTPVPGGVGp~Tva~L~~N~ 278 (301)
T PRK14194 221 --LKPGAVVIDVGINRIDDDGRSRLVGDVDFDSALPVVSAITPVPGGVGPMTIAFLMKNT 278 (301)
T ss_pred --ccCCcEEEEecccccCCCCCcceecccchHHHHhhcceecCCCCchhHHHHHHHHHHH
Confidence 8999999999976211000000112233333333334456667788877777777643
No 35
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.45 E-value=4.3e-13 Score=118.76 Aligned_cols=191 Identities=15% Similarity=0.231 Sum_probs=136.9
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.++++.++.+|. |.+ .++-|. |+|+++++...-.++.+ ..++++++..+...+.....+..+|+..++ .+.++
T Consensus 76 ~~l~~~I~~lN~-d~~V~GIivq~Plp~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~~ 153 (286)
T PRK14175 76 EEVLNELNRLNN-DDSVSGILVQVPLPKQVSEQKILEAINP-EKDVDGFHPINIGKLYIDEQTFVPCTPLGIMEILKHAD 153 (286)
T ss_pred HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCcccCCccchHhHhcCCCCCCCCcHHHHHHHHHHcC
Confidence 578899999988 323 244443 88999988766555555 458999988776666555555556666553 33456
Q ss_pred cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.++.|++|+|+|.|. +|+.++.+|...|++|+++++.. .++.+.+++||+||.+++.++++.++
T Consensus 154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-------------~~l~~~~~~ADIVIsAvg~p~~i~~~-- 218 (286)
T PRK14175 154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-------------KDMASYLKDADVIVSAVGKPGLVTKD-- 218 (286)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHHHhhCCEEEECCCCCcccCHH--
Confidence 689999999999999 99999999999999999997642 25778899999999999999999865
Q ss_pred hcCCCCcEEEecCCCC-hhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115 184 DKMKNGCVVCNMGHSN-TEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK 242 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~-~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 242 (258)
++|+|+++||+|... .+ .. --|.++..........++..+|.+++-|+.+|+.+
T Consensus 219 -~vk~gavVIDvGi~~~~~---gk-l~GDvd~~~~~~~a~~iTPVPGGVGp~T~a~L~~n 273 (286)
T PRK14175 219 -VVKEGAVIIDVGNTPDEN---GK-LKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNN 273 (286)
T ss_pred -HcCCCcEEEEcCCCcCCC---CC-eecCccHHHHHhhccCcCCCCCCCHHHHHHHHHHH
Confidence 579999999999863 11 00 11222322333333445666777777777766664
No 36
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.45 E-value=1.8e-13 Score=125.34 Aligned_cols=140 Identities=22% Similarity=0.274 Sum_probs=112.2
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHh-CCCccc-CH-H--------HHHH--hCCeeeeccC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-DGFSVV-KL-N--------EVIR--TVDIVVTATG 173 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~-~g~~~~-~l-~--------e~~~--~aDvvi~~~~ 173 (258)
.+.+|+|+|+|+||+..++.++.+|+ +|++.|+++.|++.|++ .+.+.. +. + +... ++|++++|+|
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 45599999999999999999999998 58999999999999888 555422 11 1 1111 4899999999
Q ss_pred ccccccHHHHhcCCCCcEEEecCCC-Ch--hhchhhhcCCCceeeeecc-Cc-ceeecCCCccCCCceeEEecCCChhHH
Q psy16115 174 NKNVVTREHMDKMKNGCVVCNMGHS-NT--EIDVNSLRTPDLTWEKVRS-QV-DHVIWPDVNLKNNTVIDLFRKPKSRLY 248 (258)
Q Consensus 174 ~~~~i~~~~l~~~k~g~~ivnvg~~-~~--~~~~~~l~~~~i~~~~~~~-~~-~~~~~~~~~l~~~~~~~l~~~~~~~~~ 248 (258)
+...++ +.++.+++++.++.+|.. .. ......+-.+++++.++.. .. ..|. ..+.|+++++.+..
T Consensus 248 ~~~~~~-~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~~~~~~~~~---------~~~~ll~~g~i~~~ 317 (350)
T COG1063 248 SPPALD-QALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFE---------RALDLLASGKIDPE 317 (350)
T ss_pred CHHHHH-HHHHHhcCCCEEEEEeccCCccCccCHHHHHhcccEEEeccCCCCcccHH---------HHHHHHHcCCCChh
Confidence 888886 899999999999999998 33 4557788889999999843 33 4577 67888888888888
Q ss_pred HHHhhhcCC
Q psy16115 249 LEILQTCPL 257 (258)
Q Consensus 249 ~~~~~~~~~ 257 (258)
..|+|++||
T Consensus 318 ~lit~~~~~ 326 (350)
T COG1063 318 KLITHRLPL 326 (350)
T ss_pred HceEeeccH
Confidence 888888774
No 37
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.42 E-value=1.1e-12 Score=116.88 Aligned_cols=108 Identities=18% Similarity=0.337 Sum_probs=86.4
Q ss_pred cccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc---CHHHHHHhCCeeeeccCccccccHH
Q psy16115 105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV---KLNEVIRTVDIVVTATGNKNVVTRE 181 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~---~l~e~~~~aDvvi~~~~~~~~i~~~ 181 (258)
.++.|++++|+|+|.||+.+|+.|+.+|++|+++++++.+...+.+.+.... ++.+.++++|+|+.|+.. .+++++
T Consensus 147 ~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~-~ii~~~ 225 (287)
T TIGR02853 147 FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPA-LVLTAD 225 (287)
T ss_pred CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCCh-HHhCHH
Confidence 4579999999999999999999999999999999999887666666665433 467778899999998743 367788
Q ss_pred HHhcCCCCcEEEecCCCChhhchhhhcCCCce
Q psy16115 182 HMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLT 213 (258)
Q Consensus 182 ~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~ 213 (258)
.++.|+++++++|++..+...+++..+...+.
T Consensus 226 ~l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~ 257 (287)
T TIGR02853 226 VLSKLPKHAVIIDLASKPGGTDFEYAKKRGIK 257 (287)
T ss_pred HHhcCCCCeEEEEeCcCCCCCCHHHHHHCCCE
Confidence 99999999999999987444444555544443
No 38
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.42 E-value=1.5e-12 Score=115.16 Aligned_cols=196 Identities=17% Similarity=0.223 Sum_probs=139.4
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.+++..++.+|. |.+ .++-|. |+|.++++...-.++.+ ..++++++..+...+.....+..+|+..++ .+.++
T Consensus 75 ~el~~~I~~lN~-D~~V~GIlvq~PlP~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~ 152 (285)
T PRK14191 75 AELLSLIKDLNT-DQNIDGILVQLPLPRHIDTKMVLEAIDP-NKDVDGFHPLNIGKLCSQLDGFVPATPMGVMRLLKHYH 152 (285)
T ss_pred HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhcCCc-cccccccChhhHHHHhcCCCCCCCCcHHHHHHHHHHhC
Confidence 578888999988 322 244443 88999988776555555 458999988777666555555566666653 44567
Q ss_pred cccCCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 105 VMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 105 ~~l~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.++.|++|+|+|.| .+|+.+|.+|...|++|++++... .++.+.+++||+|+.++|.++++..+.
T Consensus 153 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t-------------~~l~~~~~~ADIvV~AvG~p~~i~~~~- 218 (285)
T PRK14191 153 IEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT-------------KDLSFYTQNADIVCVGVGKPDLIKASM- 218 (285)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc-------------HHHHHHHHhCCEEEEecCCCCcCCHHH-
Confidence 78999999999999 599999999999999999986432 236788999999999999999998664
Q ss_pred hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChh
Q psy16115 184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSR 246 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 246 (258)
+|+|++++|+|....+. .. .-|.++..........+...++.+.+-|+.+|+.+--.+
T Consensus 219 --vk~GavVIDvGi~~~~~--gk-lvGDvd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a 276 (285)
T PRK14191 219 --VKKGAVVVDIGINRLND--GR-LVGDVDFENVAPKASFITPVPGGVGPMTIVSLLENTLIA 276 (285)
T ss_pred --cCCCcEEEEeecccccC--Cc-eeccccHHHHhhhccEEecCCCCChHHHHHHHHHHHHHH
Confidence 59999999999752100 00 112222222333344466667888877777777654433
No 39
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.42 E-value=1.3e-12 Score=115.40 Aligned_cols=189 Identities=15% Similarity=0.228 Sum_probs=139.7
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.+++..++.+|. |.+ .++-|. |+|.++++...--++.+ ..++++++..+...+.....+..+|...++ .+.++
T Consensus 77 ~el~~~I~~lN~-D~~V~GIlvqlPLp~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~ll~~y~ 154 (284)
T PRK14177 77 EELLGVIDKLNL-DPNVDGILLQHPVPSQIDERAAFDRIAL-EKDVDGVTTLSFGKLSMGVETYLPCTPYGMVLLLKEYG 154 (284)
T ss_pred HHHHHHHHHHhC-CCCCCeEEEcCCCCCCCCHHHHHhccCc-ccccccCChhhHHHHHcCCCCCCCCCHHHHHHHHHHhC
Confidence 568888899988 323 344443 88999987766555555 458999998777666555555556666553 44567
Q ss_pred cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.++.||+|+|+|.+. +|+.++.+|...|++|++++... .++.+.+++||+++.+.|.++++..+.
T Consensus 155 i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T-------------~~l~~~~~~ADIvIsAvGk~~~i~~~~- 220 (284)
T PRK14177 155 IDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT-------------QNLPSIVRQADIIVGAVGKPEFIKADW- 220 (284)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEeCCCcCccCHHH-
Confidence 789999999999999 99999999999999999996432 357788999999999999999998664
Q ss_pred hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115 184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP 243 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 243 (258)
+|+|+++||+|.... .-|.++..........+...+|.+.+-|+.+|+.+-
T Consensus 221 --ik~gavVIDvGin~~-------~~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~ 271 (284)
T PRK14177 221 --ISEGAVLLDAGYNPG-------NVGDIEISKAKDKSSFYTPVPGGVGPMTIAVLLLQT 271 (284)
T ss_pred --cCCCCEEEEecCccc-------ccCCcCHHHHhhhccEecCCCCCChHHHHHHHHHHH
Confidence 699999999997521 134444333444444567777888877877777653
No 40
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.41 E-value=1.1e-12 Score=115.73 Aligned_cols=193 Identities=21% Similarity=0.245 Sum_probs=138.7
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.++++.++.+|. |.+ .|+-|. |+|.++++...--++.+ ..++++++..+...+.....+..+|+..++ .+.++
T Consensus 75 ~el~~~I~~lN~-D~~V~GIivqlPlP~~i~~~~i~~~I~p-~KDVDGl~p~N~g~l~~~~~~~~PcTp~avi~lL~~~~ 152 (284)
T PRK14170 75 EKLLSVVEELNE-DKTIHGILVQLPLPEHISEEKVIDTISY-DKDVDGFHPVNVGNLFIGKDSFVPCTPAGIIELIKSTG 152 (284)
T ss_pred HHHHHHHHHHhC-CCCCCeEEEecCCCCCCCHHHHHhccCc-ccCcccCChhhhhHHhCCCCCCCCCCHHHHHHHHHHhC
Confidence 568889999988 322 244443 88999988776555555 458999988776666555555566666653 44567
Q ss_pred cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.++.||+|+|+|.+. +|+.++.+|...|++|++++.. ..++.+.+++||+|+.+.|.+++++.+.
T Consensus 153 i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~-------------T~~l~~~~~~ADIvI~AvG~~~~i~~~~- 218 (284)
T PRK14170 153 TQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR-------------TKDLPQVAKEADILVVATGLAKFVKKDY- 218 (284)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEecCCcCccCHHH-
Confidence 789999999999999 9999999999999999998542 2357888999999999999999998664
Q ss_pred hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115 184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP 243 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 243 (258)
+|+|+++||+|....+ +.-.-|.++..........++..+|.+.+-|+.+|+.+-
T Consensus 219 --vk~GavVIDvGin~~~---~gkl~GDvdfe~~~~~a~~iTPVPGGVGpvT~a~L~~N~ 273 (284)
T PRK14170 219 --IKPGAIVIDVGMDRDE---NNKLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANT 273 (284)
T ss_pred --cCCCCEEEEccCcccC---CCCeecccchHHHHhhccEecCCCCChHHHHHHHHHHHH
Confidence 6999999999976211 000112222222333344466667888877777776643
No 41
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.41 E-value=1.8e-12 Score=114.60 Aligned_cols=192 Identities=22% Similarity=0.284 Sum_probs=137.9
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.++++.++.+|. |.+ .|+-|. |+|.++++...-.++.+ ..++++++..+...+.....+..+|+..++ .+.++
T Consensus 76 ~el~~~I~~lN~-D~~V~GIlvq~PLp~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~lL~~~~ 153 (284)
T PRK14190 76 EELLALIDRLNA-DPRINGILVQLPLPKHIDEKAVIERISP-EKDVDGFHPINVGRMMLGQDTFLPCTPHGILELLKEYN 153 (284)
T ss_pred HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhcCCc-cccccccCHhhHHHHhcCCCCCCCCCHHHHHHHHHHcC
Confidence 478888999988 322 244443 89999988766556555 458999998777666655555556666553 44567
Q ss_pred cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.++.||+|+|+|.+. +|+.++.+|...|++|++++... .++.+.+++||+|+.++|.+++++.+.
T Consensus 154 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t-------------~~l~~~~~~ADIvI~AvG~p~~i~~~~- 219 (284)
T PRK14190 154 IDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT-------------KNLAELTKQADILIVAVGKPKLITADM- 219 (284)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc-------------hhHHHHHHhCCEEEEecCCCCcCCHHH-
Confidence 789999999999999 99999999999999999986422 257788999999999999999999765
Q ss_pred hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115 184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK 242 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 242 (258)
+|+|+++||+|....+. .. --|.++..........++..+|.+.+-|+.+|+.+
T Consensus 220 --ik~gavVIDvGi~~~~~--gk-l~GDvd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N 273 (284)
T PRK14190 220 --VKEGAVVIDVGVNRLEN--GK-LCGDVDFDNVKEKASYITPVPGGVGPMTITMLMHN 273 (284)
T ss_pred --cCCCCEEEEeeccccCC--CC-eeccCcHHHHhhhceEecCCCCCChHHHHHHHHHH
Confidence 59999999999762110 00 11222222223333445666777777777766664
No 42
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.40 E-value=1.4e-12 Score=114.85 Aligned_cols=190 Identities=22% Similarity=0.248 Sum_probs=136.3
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.+++..++.+|. |.+ .++-|. |+|.++++...--++.+ ..++++++..+...+.....+..+|+..++ .+.++
T Consensus 76 ~el~~~I~~lN~-d~~V~GIlvqlPLP~~~~~~~i~~~I~p-~KDVDGl~~~n~g~l~~g~~~~~PcTp~av~~lL~~~~ 153 (278)
T PRK14172 76 EDLINEIEELNK-DNNVHGIMLQLPLPKHLDEKKITNKIDA-NKDIDCLTFISVGKFYKGEKCFLPCTPNSVITLIKSLN 153 (278)
T ss_pred HHHHHHHHHHhC-CCCCCeEEEcCCCCCCCCHHHHHhccCc-ccccCccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhC
Confidence 568888899988 333 344443 88999987765555555 458999988777666555555556666553 34467
Q ss_pred cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.++.||+++|+|.+. +|+.++.+|...|++|++++.. ..++.+.+++||+|+.+.|.+++++.+.
T Consensus 154 i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~-------------T~~l~~~~~~ADIvIsAvGkp~~i~~~~- 219 (278)
T PRK14172 154 IDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK-------------TKNLKEVCKKADILVVAIGRPKFIDEEY- 219 (278)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEcCCCcCccCHHH-
Confidence 789999999999999 9999999999999999999642 2357888999999999999999998664
Q ss_pred hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEec
Q psy16115 184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFR 241 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 241 (258)
+|+|+++||+|....+ . ---|.++..........++..+|.+.+-|+.+|+.
T Consensus 220 --ik~gavVIDvGin~~~---g-kl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~ 271 (278)
T PRK14172 220 --VKEGAIVIDVGTSSVN---G-KITGDVNFDKVIDKASYITPVPGGVGSLTTTLLIK 271 (278)
T ss_pred --cCCCcEEEEeeccccC---C-ceeeeccHHHHHhhccEecCCCCCccHHHHHHHHH
Confidence 6999999999976321 0 01122222223333444666677777777666655
No 43
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=99.39 E-value=8.1e-13 Score=115.64 Aligned_cols=198 Identities=20% Similarity=0.240 Sum_probs=143.4
Q ss_pred hHHHHHHHHHhCCCCCC-CCce-EECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGRY-KSDV-YLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~~-~~~V-~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.+++..+..+|. |.+. ++-| .|+|.++++...-.++.+ ..++++++..+...+.....+..+|...++ .+.++
T Consensus 74 ~eLl~~I~~lN~-D~~v~GIlVQlPLp~hld~~~il~~I~p-~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~ 151 (283)
T COG0190 74 EELLALIDELNA-DPEVDGILVQLPLPKHLDEQKLLQAIDP-EKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYG 151 (283)
T ss_pred HHHHHHHHHhcC-CCCCcEEEEeCCCCCCCCHHHHHhhcCc-CCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhC
Confidence 678888899988 4332 3333 289999987665555555 358999998777666544444556776664 44567
Q ss_pred cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.++.|++++|||.|. +|+.++.+|...+++|++++..- .++.+.+++||+++.+.|.++++.++
T Consensus 152 i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T-------------~~l~~~~k~ADIvv~AvG~p~~i~~d-- 216 (283)
T COG0190 152 IDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT-------------KDLASITKNADIVVVAVGKPHFIKAD-- 216 (283)
T ss_pred CCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC-------------CCHHHHhhhCCEEEEecCCccccccc--
Confidence 789999999999999 89999999999999999996533 35778899999999999999999855
Q ss_pred hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHH
Q psy16115 184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLY 248 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ 248 (258)
++|+|++++|+|..-.+. .. --|.++..........++..+|.+.+-|+-+|+.+.--++.
T Consensus 217 -~vk~gavVIDVGinrv~~--~k-l~GDVdf~~v~~~a~~iTPVPGGVGPmTvamLl~Nt~~a~~ 277 (283)
T COG0190 217 -MVKPGAVVIDVGINRVND--GK-LVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAE 277 (283)
T ss_pred -cccCCCEEEecCCccccC--Cc-eEeeccHHHHHHhhcccCCCCCccCHHHHHHHHHHHHHHHH
Confidence 579999999999872221 00 11222333333334457778888888888888876544443
No 44
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.39 E-value=2.1e-12 Score=114.20 Aligned_cols=190 Identities=19% Similarity=0.227 Sum_probs=134.7
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.+++..+..+|. |.+ .++-|. |+|.++++...--++.+ ..++++++..+...+.....+..+|+..++ .+.++
T Consensus 82 ~el~~~I~~LN~-D~~V~GIlvqlPLP~~i~~~~i~~~I~p-~KDVDGl~~~N~g~l~~g~~~~~PcTp~av~~ll~~~~ 159 (287)
T PRK14176 82 EELLELIDSLNK-RKDVHGILLQLPLPKHLDPQEAMEAIDP-AKDADGFHPYNMGKLMIGDEGLVPCTPHGVIRALEEYG 159 (287)
T ss_pred HHHHHHHHHHhC-CCCCCeEEEcCCCCCCCCHHHHHhccCc-cccccccChhhhhhHhcCCCCCCCCcHHHHHHHHHHcC
Confidence 578888999988 333 244443 88899987766555555 458999988777666555555556666553 34456
Q ss_pred cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.++.|++|+|+|.|. +|+.++.+|...|++|++++... .++.+.+++||+++.+.|.++++..+
T Consensus 160 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T-------------~~l~~~~~~ADIvv~AvG~p~~i~~~-- 224 (287)
T PRK14176 160 VDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT-------------DDLKKYTLDADILVVATGVKHLIKAD-- 224 (287)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC-------------CCHHHHHhhCCEEEEccCCccccCHH--
Confidence 789999999999999 99999999999999999997422 25788899999999999999999865
Q ss_pred hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEec
Q psy16115 184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFR 241 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 241 (258)
++|+|+++||+|....+ .. --|.++..........++..+|.+++-|+..|+.
T Consensus 225 -~vk~gavVIDvGin~~~---gk-l~GDvd~~~~~~~a~~iTPVPGGVGp~T~a~L~~ 277 (287)
T PRK14176 225 -MVKEGAVIFDVGITKEE---DK-VYGDVDFENVIKKASLITPVPGGVGPLTIAMLMK 277 (287)
T ss_pred -HcCCCcEEEEecccccC---CC-ccCCcCHHHHHhhceEcCCCCCCChHHHHHHHHH
Confidence 57999999999975210 00 1122222222233334555667777666666655
No 45
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=99.39 E-value=2.4e-12 Score=114.38 Aligned_cols=196 Identities=15% Similarity=0.175 Sum_probs=138.7
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcc--cCCCCCcchhhh---ccC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLN--KAGPFKPSYYSL---KRS 102 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~---~~~ 102 (258)
.++++.+..+|. |.+ .|+-|. |+|.++++...-.++.+ ..++++++..+...+... ..+..+|+..++ .+.
T Consensus 83 ~el~~~I~~lN~-D~~V~GIlvq~PlP~~id~~~i~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~ 160 (299)
T PLN02516 83 AELISKVHELNA-NPDVHGILVQLPLPKHINEEKILNEISL-EKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSR 160 (299)
T ss_pred HHHHHHHHHHhC-CCCCCeEEEecCCCCCcCHHHHHhccCc-ccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHHHHHH
Confidence 568888999988 322 344443 88999988776666655 458999988777665433 334455666553 445
Q ss_pred cCcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHH
Q psy16115 103 TDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTRE 181 (258)
Q Consensus 103 ~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~ 181 (258)
++.++.||+|+|||.+. +|+.++.+|...|++|++++.. ..++++.+++||+|+.+.|.++++..+
T Consensus 161 ~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~-------------T~nl~~~~~~ADIvv~AvGk~~~i~~~ 227 (299)
T PLN02516 161 SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR-------------TPDPESIVREADIVIAAAGQAMMIKGD 227 (299)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEcCCCcCccCHH
Confidence 67789999999999999 9999999999999999999642 235788899999999999999999865
Q ss_pred HHhcCCCCcEEEecCCCChhhchh--h-hcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115 182 HMDKMKNGCVVCNMGHSNTEIDVN--S-LRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP 243 (258)
Q Consensus 182 ~l~~~k~g~~ivnvg~~~~~~~~~--~-l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 243 (258)
. +|+|+++||+|....+.... . -.-|.++..........+...+|.+.+-|+.+|+.+-
T Consensus 228 ~---vk~gavVIDvGin~~~~~~~~~g~kl~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~ 289 (299)
T PLN02516 228 W---IKPGAAVIDVGTNAVSDPSKKSGYRLVGDVDFAEVSKVAGWITPVPGGVGPMTVAMLLKNT 289 (299)
T ss_pred H---cCCCCEEEEeeccccCcccccCCCceEcCcChHHhhhhceEecCCCCCchHHHHHHHHHHH
Confidence 4 69999999999762111000 0 0112223233333344466678888887877777653
No 46
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.38 E-value=3e-12 Score=113.82 Aligned_cols=197 Identities=23% Similarity=0.231 Sum_probs=137.9
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.+++..++.+|. |.+ .|+-|. |+|+++++...-.++.+ ..++++++..+...+.....+..+|+..++ .+.++
T Consensus 76 ~el~~~I~~lN~-D~~V~GIivq~PLP~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~ 153 (297)
T PRK14186 76 AEVEALIAQLNQ-DERVDGILLQLPLPKHLDEVPLLHAIDP-DKDADGLHPLNLGRLVKGEPGLRSCTPAGVMRLLRSQQ 153 (297)
T ss_pred HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCcccCChhhHHHHhCCCCCCCCCCHHHHHHHHHHhC
Confidence 468888899988 322 344443 88999987765555555 458999988776665544444455665553 34467
Q ss_pred cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.++.||+|+|||.+. +|+.++.+|...|++|++++.. ..++.+.+++||+|+.+.|.+++++.+.
T Consensus 154 i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~-------------T~~l~~~~~~ADIvIsAvGkp~~i~~~~- 219 (297)
T PRK14186 154 IDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR-------------TQDLASITREADILVAAAGRPNLIGAEM- 219 (297)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEccCCcCccCHHH-
Confidence 789999999999999 9999999999999999998542 2257888999999999999999998654
Q ss_pred hcCCCCcEEEecCCCChh-hchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCC
Q psy16115 184 DKMKNGCVVCNMGHSNTE-IDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPK 244 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~~~-~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 244 (258)
+|+|+++||+|....+ ..-+.---|.++..........+...+|.+.+-|+.+|+.+--
T Consensus 220 --ik~gavVIDvGin~~~~~~~~gkl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~ 279 (297)
T PRK14186 220 --VKPGAVVVDVGIHRLPSSDGKTRLCGDVDFEEVEPVAAAITPVPGGVGPMTVTMLLVNTV 279 (297)
T ss_pred --cCCCCEEEEeccccccccccCCceeCCccHHHHHhhceEecCCCCCchHHHHHHHHHHHH
Confidence 6999999999976211 1000001122232233333444666778888877777776433
No 47
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.38 E-value=8e-13 Score=116.98 Aligned_cols=140 Identities=18% Similarity=0.240 Sum_probs=108.5
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCccc-C---HHHHH------HhCCeeeeccCccc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV-K---LNEVI------RTVDIVVTATGNKN 176 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~-~---l~e~~------~~aDvvi~~~~~~~ 176 (258)
+|++|+|+|.|.||+.+++.++.+|++ |+++++++.+.+.+++.|++.. + ..+.+ ...|+++.+++...
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~ 199 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATA 199 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChH
Confidence 789999999999999999999999996 8889999998888888887532 2 11221 14799999998887
Q ss_pred cccHHHHhcCCCCcEEEecCCC--C--hhhchhhhcCCCceeeeeccCc-ceeecCCCccCCCceeEEecC--CChhHHH
Q psy16115 177 VVTREHMDKMKNGCVVCNMGHS--N--TEIDVNSLRTPDLTWEKVRSQV-DHVIWPDVNLKNNTVIDLFRK--PKSRLYL 249 (258)
Q Consensus 177 ~i~~~~l~~~k~g~~ivnvg~~--~--~~~~~~~l~~~~i~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~--~~~~~~~ 249 (258)
.++ +.++.++++++++.+|.. . .+.....+..+++++.++.... ++|. .++.++.+ .+.++.+
T Consensus 200 ~~~-~~~~~l~~~G~iv~~G~~~~~~~~~i~~~~~~~~~~~i~g~~~~~~~~~~---------~~~~~l~~~~~~~~~~~ 269 (280)
T TIGR03366 200 AVR-ACLESLDVGGTAVLAGSVFPGGPVALDPEQVVRRWLTIRGVHNYEPRHLD---------QAVRFLAANGQRFPFEE 269 (280)
T ss_pred HHH-HHHHHhcCCCEEEEeccCCCCCceeeCHHHHHhCCcEEEecCCCCHHHHH---------HHHHHHHhhCCCCCHHH
Confidence 776 789999999999999963 1 2344556777888888876543 3456 55666665 3677889
Q ss_pred HHhhhcCC
Q psy16115 250 EILQTCPL 257 (258)
Q Consensus 250 ~~~~~~~~ 257 (258)
.|+|+|||
T Consensus 270 ~it~~~~l 277 (280)
T TIGR03366 270 LVGKPFPL 277 (280)
T ss_pred Hhhccccc
Confidence 99999997
No 48
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.38 E-value=2.9e-12 Score=113.09 Aligned_cols=192 Identities=19% Similarity=0.280 Sum_probs=137.0
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcc-cCCCCCcchhhh---ccCc
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLN-KAGPFKPSYYSL---KRST 103 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~---~~~~ 103 (258)
.+++..+..+|. |.+ .++-|. |+|+++++...-.++.+ ..++++++..+...+... ..+..+|+..++ .+.+
T Consensus 74 ~~l~~~I~~lN~-D~~V~GIivq~PLP~~i~~~~i~~~I~p-~KDVDGl~~~N~g~l~~g~~~~~~PcTp~avi~lL~~y 151 (282)
T PRK14166 74 NELLALINTLNH-DDSVHGILVQLPLPDHICKDLILESIIS-SKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAY 151 (282)
T ss_pred HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCcccCChhhhHHHhcCCCCCCcCCCHHHHHHHHHHh
Confidence 568888888888 323 244443 88999988766555555 458999988776655444 334456666553 4456
Q ss_pred CcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHH
Q psy16115 104 DVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREH 182 (258)
Q Consensus 104 ~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~ 182 (258)
+.++.||+|+|+|.+. +|+.++.+|...|++|++++... .++.+.+++||+++.+.|.+++++++.
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T-------------~nl~~~~~~ADIvIsAvGkp~~i~~~~ 218 (282)
T PRK14166 152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT-------------KDLSLYTRQADLIIVAAGCVNLLRSDM 218 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEcCCCcCccCHHH
Confidence 7789999999999999 99999999999999999986432 357888999999999999999999664
Q ss_pred HhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115 183 MDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK 242 (258)
Q Consensus 183 l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 242 (258)
+|+|+++||+|....+. .. .-|.++..........++..+|.+.+-|+.+|+.+
T Consensus 219 ---vk~GavVIDvGin~~~~--gk-l~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N 272 (282)
T PRK14166 219 ---VKEGVIVVDVGINRLES--GK-IVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLEN 272 (282)
T ss_pred ---cCCCCEEEEecccccCC--CC-eeCCCCHHHHHhhccEecCCCCCchHHHHHHHHHH
Confidence 69999999999762110 00 11223333333344446677788887777777664
No 49
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.37 E-value=3e-12 Score=112.93 Aligned_cols=192 Identities=20% Similarity=0.200 Sum_probs=137.4
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCC-CCCcchhhh---ccCc
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG-PFKPSYYSL---KRST 103 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~---~~~~ 103 (258)
.+++..++.+|. |.+ .++-|. |+|.++++...-.++.+ ..++++++..+...+.....+ ..+|+..++ .+.+
T Consensus 74 ~~l~~~I~~lN~-d~~V~GIivqlPLp~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~g~~~~~~PcTp~avi~ll~~~ 151 (282)
T PRK14182 74 AELLALIARLNA-DPAVHGILVQLPLPKHVDERAVLDAISP-AKDADGFHPFNVGALSIGIAGVPRPCTPAGVMRMLDEA 151 (282)
T ss_pred HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCcCCCCHhHHHHHhCCCCCCCCCCCHHHHHHHHHHh
Confidence 468888888888 333 344443 88999988766555555 458999998777666555555 456666553 4456
Q ss_pred CcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHH
Q psy16115 104 DVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREH 182 (258)
Q Consensus 104 ~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~ 182 (258)
+.++.||+++|+|.+. +|+.++.+|...|++|++++... .++.+.+++||+++.+.|.+++++++.
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T-------------~nl~~~~~~ADIvI~AvGk~~~i~~~~ 218 (282)
T PRK14182 152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT-------------ADLAGEVGRADILVAAIGKAELVKGAW 218 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEecCCcCccCHHH
Confidence 7789999999999999 99999999999999999985422 357888999999999999999998664
Q ss_pred HhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115 183 MDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK 242 (258)
Q Consensus 183 l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 242 (258)
+|+|+++||+|...... .. --|.++..........++..+|.+.+-|+.+|+.+
T Consensus 219 ---ik~gaiVIDvGin~~~~--gk-l~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N 272 (282)
T PRK14182 219 ---VKEGAVVIDVGMNRLAD--GK-LVGDVEFAAAAARASAITPVPGGVGPMTRAMLLVN 272 (282)
T ss_pred ---cCCCCEEEEeeceecCC--CC-eeCCCCHHHHHhhccEecCCCCCChHHHHHHHHHH
Confidence 69999999999762100 00 11222323333344446666788877777776654
No 50
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=99.37 E-value=1e-12 Score=119.48 Aligned_cols=140 Identities=16% Similarity=0.231 Sum_probs=107.2
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc------CHHHHHH---hCCeeeeccCcccc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV------KLNEVIR---TVDIVVTATGNKNV 177 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~---~aDvvi~~~~~~~~ 177 (258)
+|++|+|+|+|.+|+..++.++..|+ +|+++++++++++.+++.|++.. ++.+... ..|+++.|+|....
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~ 248 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSS 248 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHH
Confidence 78999999999999999999999999 59999999999988888887532 2333332 27999999988766
Q ss_pred ccHHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHHHhhhc
Q psy16115 178 VTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTC 255 (258)
Q Consensus 178 i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 255 (258)
+. ..++.++++++++.+|.. ..+.....+..+++++.++....+.|. .++.|+.+++.+....|+|++
T Consensus 249 ~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~---------~~~~l~~~g~i~~~~~i~~~~ 318 (343)
T PRK09880 249 IN-TCLEVTRAKGVMVQVGMGGAPPEFPMMTLIVKEISLKGSFRFTEEFN---------TAVSWLANGVINPLPLLSAEY 318 (343)
T ss_pred HH-HHHHHhhcCCEEEEEccCCCCCccCHHHHHhCCcEEEEEeeccccHH---------HHHHHHHcCCCCchhheEEEE
Confidence 75 789999999999999976 233344445566777777654433344 566777777777777888888
Q ss_pred CC
Q psy16115 256 PL 257 (258)
Q Consensus 256 ~~ 257 (258)
||
T Consensus 319 ~l 320 (343)
T PRK09880 319 PF 320 (343)
T ss_pred EH
Confidence 76
No 51
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.36 E-value=4.5e-12 Score=112.11 Aligned_cols=191 Identities=19% Similarity=0.199 Sum_probs=138.5
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.++++.++.+|. |.+ .++-|. |+|+++++...-.++.+ ..++++++..+...+.....+..+|+..++ .+.++
T Consensus 75 ~~l~~~I~~lN~-d~~V~GIlvqlPLP~~id~~~i~~~I~p-~KDVDGl~~~N~g~l~~~~~~~~PcTp~av~~lL~~~~ 152 (286)
T PRK14184 75 EELEDLIAELNA-RPDIDGILLQLPLPKGLDSQRCLELIDP-AKDVDGFHPENMGRLALGLPGFRPCTPAGVMTLLERYG 152 (286)
T ss_pred HHHHHHHHHHhC-CCcCceEEEecCCCCCCCHHHHHhccCc-ccCcccCCHhhHHHHhCCCCCCCCCCHHHHHHHHHHhC
Confidence 568888899988 323 244443 89999988766555555 458999998877766655555566666663 34567
Q ss_pred cccCCCEEEEEcCch-HHHHHHHHHHh----CCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcccccc
Q psy16115 105 VMFGGKQVVLCGYGE-VGKGCCQSLKG----LGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVT 179 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~----~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~ 179 (258)
.++.||+++|||.+. +|+.++.+|.. .|++|+.++.+. .++.+.+++||+|+.+.+.++++.
T Consensus 153 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t-------------~~l~~~~~~ADIVI~AvG~p~li~ 219 (286)
T PRK14184 153 LSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT-------------PDLAEECREADFLFVAIGRPRFVT 219 (286)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc-------------hhHHHHHHhCCEEEEecCCCCcCC
Confidence 789999999999999 99999999998 789999987532 257888999999999999999998
Q ss_pred HHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115 180 REHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK 242 (258)
Q Consensus 180 ~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 242 (258)
.+. +|+|+++||+|....+ .. --|.++..........++..++.+.+-|+-+|+.+
T Consensus 220 ~~~---vk~GavVIDVGi~~~~---~~-l~GDVdf~~v~~~a~~iTPVPGGVGp~Tva~Ll~N 275 (286)
T PRK14184 220 ADM---VKPGAVVVDVGINRTD---DG-LVGDCDFEGLSDVASAITPVPGGVGPMTIAQLLVN 275 (286)
T ss_pred HHH---cCCCCEEEEeeeeccC---CC-ccCCccHHHHHhhceEecCCCCCChHHHHHHHHHH
Confidence 665 4999999999976211 01 12333333333444446666777777777776664
No 52
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.36 E-value=4.3e-12 Score=112.49 Aligned_cols=197 Identities=17% Similarity=0.219 Sum_probs=140.0
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.++++.+..+|. |.+ .++-|. |+|.++++...-.++.+ ..++++++..+...+.....+..+|+..++ .+.++
T Consensus 75 ~el~~~I~~lN~-D~~V~GIlvqlPLP~~i~~~~i~~~I~p-~KDVDGl~~~N~g~l~~~~~~~~PcTp~av~~lL~~~~ 152 (293)
T PRK14185 75 EELLAKVRELNQ-DDDVDGFIVQLPLPKHISEQKVIEAIDY-RKDVDGFHPINVGRMSIGLPCFVSATPNGILELLKRYH 152 (293)
T ss_pred HHHHHHHHHHhC-CCCCCeEEEecCCCCCCCHHHHHhccCc-ccCcCCCCHhhHHHHhCCCCCCCCCCHHHHHHHHHHhC
Confidence 568888889988 323 344443 88999987766556555 458999998777666555555556666553 34457
Q ss_pred cccCCCEEEEEcCch-HHHHHHHHHHhC----CCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcccccc
Q psy16115 105 VMFGGKQVVLCGYGE-VGKGCCQSLKGL----GCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVT 179 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~----G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~ 179 (258)
.++.||+|+|||.+. +|+.++.+|... +++|++++... .++.+.+++||+++.+.|.++++.
T Consensus 153 i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T-------------~nl~~~~~~ADIvIsAvGkp~~i~ 219 (293)
T PRK14185 153 IETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS-------------KNLKKECLEADIIIAALGQPEFVK 219 (293)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC-------------CCHHHHHhhCCEEEEccCCcCccC
Confidence 789999999999999 999999999887 68999985422 367888999999999999999998
Q ss_pred HHHHhcCCCCcEEEecCCCChhhchh--h-hcCCCceeeeeccCcceeecCCCccCCCceeEEecCCC
Q psy16115 180 REHMDKMKNGCVVCNMGHSNTEIDVN--S-LRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPK 244 (258)
Q Consensus 180 ~~~l~~~k~g~~ivnvg~~~~~~~~~--~-l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 244 (258)
++ ++|+|+++||+|....+.... . -.-|.++..........++..+|.+.+-|+.+|+.+--
T Consensus 220 ~~---~vk~gavVIDvGin~~~~~~~~~g~klvGDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~ 284 (293)
T PRK14185 220 AD---MVKEGAVVIDVGTTRVPDATRKSGFKLTGDVKFDEVAPKCSYITPVPGGVGPMTIVSLMKNTL 284 (293)
T ss_pred HH---HcCCCCEEEEecCcccccccccCCCeeEcCCCHHHHHhhccEeCCCCCCchHHHHHHHHHHHH
Confidence 65 479999999999762110000 0 01123333334444455777778888888877776543
No 53
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.35 E-value=1.7e-11 Score=108.43 Aligned_cols=191 Identities=18% Similarity=0.199 Sum_probs=133.7
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.+++..++.+|. |.+ .++-|. |+|.++++...-.++.+ ..++++++..+...+.....+..+|+..++ .+.++
T Consensus 77 ~el~~~I~~lN~-d~~V~GIlvqlPLP~~~~~~~i~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~ 154 (285)
T PRK10792 77 AELLALIDELNA-DPTIDGILVQLPLPAHIDNVKVLERIHP-DKDVDGFHPYNVGRLAQRIPLLRPCTPRGIMTLLERYG 154 (285)
T ss_pred HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-ccccCccChhhHhHHhCCCCCCCCCCHHHHHHHHHHcC
Confidence 578888999988 333 244443 88899987765555555 458999988777666554455556666553 34456
Q ss_pred cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.++.|++++|+|.|. +|+.++.+|...|++|++++... .++.+.+++||+++.+.|.++++..
T Consensus 155 i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T-------------~~l~~~~~~ADIvi~avG~p~~v~~--- 218 (285)
T PRK10792 155 IDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT-------------KNLRHHVRNADLLVVAVGKPGFIPG--- 218 (285)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC-------------CCHHHHHhhCCEEEEcCCCcccccH---
Confidence 789999999999999 99999999999999999997532 2578889999999999999999985
Q ss_pred hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEec
Q psy16115 184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFR 241 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 241 (258)
+++|+|+++||+|....+. .. .-|.++..........+...+|.+++-|+.+|+.
T Consensus 219 ~~vk~gavVIDvGin~~~~--gk-~~GDvd~~~~~~~a~~itPvPGGVGp~T~a~L~~ 273 (285)
T PRK10792 219 EWIKPGAIVIDVGINRLED--GK-LVGDVEFETAAERASWITPVPGGVGPMTVATLLE 273 (285)
T ss_pred HHcCCCcEEEEcccccccC--CC-cCCCcCHHHHHhhccCcCCCCCCChHHHHHHHHH
Confidence 4579999999999652110 00 1122222222222333555566666666665554
No 54
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.35 E-value=5.1e-12 Score=112.12 Aligned_cols=199 Identities=17% Similarity=0.185 Sum_probs=139.2
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhccc--CCCCCcchhh---hccC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNK--AGPFKPSYYS---LKRS 102 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~---~~~~ 102 (258)
.+++..++.+|. |.+ .++-|. |+|.++++...--++.+ ..++++++..+...+.... .+..+|+..+ +.+.
T Consensus 76 ~~l~~~I~~lN~-d~~V~GIlvqlPLP~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~ 153 (294)
T PRK14187 76 SSLIEKINELNN-DDSVHGILVQLPVPNHIDKNLIINTIDP-EKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKT 153 (294)
T ss_pred HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCcccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHH
Confidence 568888999988 322 344443 88999988765555555 4589999887766554433 2344556555 3445
Q ss_pred cCcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHH
Q psy16115 103 TDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTRE 181 (258)
Q Consensus 103 ~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~ 181 (258)
++.++.||+++|+|.+. +|+.++.+|...|++|++++... .++.+.+++||+++.+.|.++++.++
T Consensus 154 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T-------------~~l~~~~~~ADIvVsAvGkp~~i~~~ 220 (294)
T PRK14187 154 ITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT-------------RDLADYCSKADILVAAVGIPNFVKYS 220 (294)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEccCCcCccCHH
Confidence 67789999999999999 99999999999999999986432 35788899999999999999999866
Q ss_pred HHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChh
Q psy16115 182 HMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSR 246 (258)
Q Consensus 182 ~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 246 (258)
. +|+|+++||+|....+..-..-.-|.++..........++..+|.+.+-|+.+|+.+--.+
T Consensus 221 ~---ik~gaiVIDVGin~~~~~~~~kl~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a 282 (294)
T PRK14187 221 W---IKKGAIVIDVGINSIEEGGVKKFVGDVDFAEVKKKASAITPVPGGVGPMTIAFLMVNTVIA 282 (294)
T ss_pred H---cCCCCEEEEecccccCCCCccceeCCccHHHHhhhccEecCCCCCChHHHHHHHHHHHHHH
Confidence 5 6899999999976211000000112223233333444466677888888887777654433
No 55
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.35 E-value=1.5e-11 Score=108.58 Aligned_cols=192 Identities=19% Similarity=0.219 Sum_probs=136.6
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.+++..+..+|. |.+ .++-|. |+|+++++...--++.+ ..++++++..+...+.....+..+|+..++ .+.++
T Consensus 74 ~el~~~I~~lN~-D~~V~GIlvqlPLp~~i~~~~i~~~I~p-~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~ 151 (282)
T PRK14169 74 ADLLAKVAELNH-DPDVDAILVQLPLPAGLDEQAVIDAIDP-DKDVDGFSPVSVGRLWANEPTVVASTPYGIMALLDAYD 151 (282)
T ss_pred HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhhcCc-ccCcccCChhhhHHHhcCCCCCCCCCHHHHHHHHHHhC
Confidence 578888899988 333 244443 88999988766555555 458999988777666655555566666663 34467
Q ss_pred cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.++.||+|+|||.+. +|+.++.+|...|++|++++... .++.+.+++||+|+.+.|.+++++.+
T Consensus 152 i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T-------------~~l~~~~~~ADIvI~AvG~p~~i~~~-- 216 (282)
T PRK14169 152 IDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT-------------RNLKQLTKEADILVVAVGVPHFIGAD-- 216 (282)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC-------------CCHHHHHhhCCEEEEccCCcCccCHH--
Confidence 789999999999999 99999999999999999985422 25788899999999999999999866
Q ss_pred hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115 184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK 242 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 242 (258)
++|+|+++||+|...... .. --|.++..........++..+|.+.+-|+.+|+.+
T Consensus 217 -~vk~GavVIDvGin~~~~--gk-l~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N 271 (282)
T PRK14169 217 -AVKPGAVVIDVGISRGAD--GK-LLGDVDEAAVAPIASAITPVPGGVGPMTIASLMAQ 271 (282)
T ss_pred -HcCCCcEEEEeeccccCC--CC-eeecCcHHHHHhhccEecCCCCCcHHHHHHHHHHH
Confidence 479999999999762110 00 01112222222333445666777777777666653
No 56
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.35 E-value=1.8e-11 Score=108.31 Aligned_cols=195 Identities=19% Similarity=0.178 Sum_probs=138.1
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.+++..++.+|. |.+ .++-|. |+|+++++...-.++.+ ..++++++..+...+.....+..+|+..++ .+.++
T Consensus 73 ~el~~~I~~lN~-D~~V~GIlvqlPLP~~i~~~~i~~~I~p-~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~ 150 (287)
T PRK14173 73 EELLELIARLNA-DPEVDGILVQLPLPPHIDFQRVLEAIDP-LKDVDGFHPLNVGRLWMGGEALEPCTPAGVVRLLKHYG 150 (287)
T ss_pred HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-cccccccChhhhHHHhcCCCCCCCCCHHHHHHHHHHcC
Confidence 467888888888 322 244443 88899988766555555 458999998777666555555556666653 44567
Q ss_pred cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.++.||+|+|||.+. +|+.++.+|...|++|++++... .++.+.+++||+|+.+.|.+++++.+.
T Consensus 151 i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T-------------~~l~~~~~~ADIvIsAvGkp~~i~~~~- 216 (287)
T PRK14173 151 IPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT-------------QDLPAVTRRADVLVVAVGRPHLITPEM- 216 (287)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEecCCcCccCHHH-
Confidence 789999999999999 99999999999999999986422 257888999999999999999998665
Q ss_pred hcCCCCcEEEecCCCChhhchhh-hcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115 184 DKMKNGCVVCNMGHSNTEIDVNS-LRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP 243 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~~~~~~~~-l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 243 (258)
+|+|+++||+|.......-.. ..-|.++ .........+...++.+.+-|+.+|+.+-
T Consensus 217 --vk~GavVIDVGin~~~~~~gk~~l~GDVd-~~v~~~a~~iTPVPGGVGp~T~a~L~~N~ 274 (287)
T PRK14173 217 --VRPGAVVVDVGINRVGGNGGRDILTGDVH-PEVAEVAGALTPVPGGVGPMTVAMLMANT 274 (287)
T ss_pred --cCCCCEEEEccCccccCCCCceeeecccc-HhHHhhCcEEecCCCChhHHHHHHHHHHH
Confidence 699999999997621100000 0112223 22333344467777888888887777643
No 57
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.34 E-value=5.9e-12 Score=111.00 Aligned_cols=192 Identities=17% Similarity=0.206 Sum_probs=138.8
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.++++.+..+|. |.+ .|+-|. |+|+++++...--++.+ ..++++++..+...+.....+..+|+..++ .+.++
T Consensus 70 ~el~~~I~~lN~-D~~V~GIlvqlPLp~~i~~~~v~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~ 147 (279)
T PRK14178 70 RTVLERIRRLNE-DPDINGILVQLPLPKGVDTERVIAAILP-EKDVDGFHPLNLGRLVSGLPGFAPCTPNGIMTLLHEYK 147 (279)
T ss_pred HHHHHHHHHHhC-CCCCCeEEEcCCCCCCCCHHHHHhccCc-ccCcccCChhhHHHHhCCCCCCCCCCHHHHHHHHHHcC
Confidence 578899999988 323 344443 89999988766555555 458999988777666655555556666663 34467
Q ss_pred cccCCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 105 VMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 105 ~~l~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.++.|++|.|+|.| .+|+.++.++...|++|++++.+. .++.+.+++||++|.+.+.++++.++.
T Consensus 148 i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t-------------~~L~~~~~~ADIvI~Avgk~~lv~~~~- 213 (279)
T PRK14178 148 ISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT-------------ENLKAELRQADILVSAAGKAGFITPDM- 213 (279)
T ss_pred CCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh-------------hHHHHHHhhCCEEEECCCcccccCHHH-
Confidence 78999999999999 599999999999999999987543 257888999999999999889998766
Q ss_pred hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115 184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP 243 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 243 (258)
+|+|+++||+|....+ .-.-|.++..........++..+|.+++-|+.+|+.+-
T Consensus 214 --vk~GavVIDVgi~~~~----gkl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~N~ 267 (279)
T PRK14178 214 --VKPGATVIDVGINQVN----GKLCGDVDFDAVKEIAGAITPVPGGVGPMTIATLMENT 267 (279)
T ss_pred --cCCCcEEEEeeccccC----CCCcCCccHHHHHhhccCcCCCCCCCHHHHHHHHHHHH
Confidence 5999999999975210 00112223223333334466667888877887777643
No 58
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.34 E-value=5.8e-12 Score=111.98 Aligned_cols=197 Identities=17% Similarity=0.166 Sum_probs=138.1
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.+++..+..+|. |.+ .++-|. |+|+++++...-.++.+ ..++++++..+...+.....+..+|+..++ .+.++
T Consensus 75 ~el~~~I~~lN~-D~~V~GIlvq~PLP~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~ 152 (297)
T PRK14167 75 EELYDTIDELNA-DEDVHGILVQMPVPDHVDDREVLRRIDP-AKDVDGFHPENVGRLVAGDARFKPCTPHGIQKLLAAAG 152 (297)
T ss_pred HHHHHHHHHHhC-CCCCCEEEEcCCCCCCCCHHHHHhccCc-ccCcccCChhhhHHHhCCCCCCCCCCHHHHHHHHHHhC
Confidence 568888899988 322 344443 89999988766555555 458999988777666554555555666553 34467
Q ss_pred cccCCCEEEEEcCch-HHHHHHHHHHhC----CCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcccccc
Q psy16115 105 VMFGGKQVVLCGYGE-VGKGCCQSLKGL----GCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVT 179 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~----G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~ 179 (258)
.++.||+|+|||.+. +|+.++.+|... +++|++++... .++.+.+++||+|+.|.|.+++++
T Consensus 153 i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T-------------~~l~~~~~~ADIvIsAvGkp~~i~ 219 (297)
T PRK14167 153 VDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT-------------DDLAAKTRRADIVVAAAGVPELID 219 (297)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEccCCcCccC
Confidence 789999999999999 999999999876 79999985322 257888999999999999999998
Q ss_pred HHHHhcCCCCcEEEecCCCChhhch--hhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCC
Q psy16115 180 REHMDKMKNGCVVCNMGHSNTEIDV--NSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPK 244 (258)
Q Consensus 180 ~~~l~~~k~g~~ivnvg~~~~~~~~--~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 244 (258)
.+ ++|+|+++||+|....+... ..---|.++..........++..+|.+.+-|+.+|+.+--
T Consensus 220 ~~---~ik~gaiVIDvGin~~~~~~~~g~kl~GDVd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~ 283 (297)
T PRK14167 220 GS---MLSEGATVIDVGINRVDADTEKGYELVGDVEFESAKEKASAITPVPGGVGPMTRAMLLYNTV 283 (297)
T ss_pred HH---HcCCCCEEEEccccccCcccccCCceeecCcHHHHHhhceEecCCCCCchHHHHHHHHHHHH
Confidence 65 47999999999976211000 0001122233333334444667778888777777776543
No 59
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.34 E-value=1.8e-11 Score=108.25 Aligned_cols=193 Identities=23% Similarity=0.253 Sum_probs=137.3
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.++++.+..+|. |.+ .|+-|. |+|.++++...-.++.+ ..++++++..+...+.....+..+|+..++ .+.++
T Consensus 76 ~~l~~~I~~lN~-d~~V~GIivqlPlp~~i~~~~i~~~I~p-~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~ 153 (284)
T PRK14179 76 EELLDLIERYNQ-DPTWHGILVQLPLPKHINEEKILLAIDP-KKDVDGFHPMNTGHLWSGRPVMIPCTPAGIMEMFREYN 153 (284)
T ss_pred HHHHHHHHHHhC-CCCCCEEEEcCCCCCCCCHHHHHhccCc-cccccccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhC
Confidence 568888898988 322 244343 88899987776555555 458999998777666655555556666653 34467
Q ss_pred cccCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 105 VMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 105 ~~l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.++.||+|+|||. |.+|+.+|.+|...|++|++++.. ..++.+.+++||+|+.+.+.++.+..+
T Consensus 154 i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~-------------t~~l~~~~~~ADIVI~avg~~~~v~~~-- 218 (284)
T PRK14179 154 VELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR-------------TRNLAEVARKADILVVAIGRGHFVTKE-- 218 (284)
T ss_pred CCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC-------------CCCHHHHHhhCCEEEEecCccccCCHH--
Confidence 7899999999999 889999999999999999998321 126788899999999999999999854
Q ss_pred hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115 184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP 243 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 243 (258)
++|+|+++||+|...... .. --|.++..........++..+|.+.+-|+.+|+.+-
T Consensus 219 -~ik~GavVIDvgin~~~~--gk-l~GDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~ 274 (284)
T PRK14179 219 -FVKEGAVVIDVGMNRDEN--GK-LIGDVDFDEVAEVASYITPVPGGVGPMTITMLMEQT 274 (284)
T ss_pred -HccCCcEEEEecceecCC--CC-eecCccHHHHHhhccEecCCCCCchHHHHHHHHHHH
Confidence 389999999999762110 00 112223233333344466667888877777776643
No 60
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.33 E-value=2e-11 Score=107.64 Aligned_cols=192 Identities=19% Similarity=0.224 Sum_probs=134.9
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.+++..++.+|. |.+ .++-|. |+|.++++...-.++.+ ..++++++..+...+.....+..+|+..++ .+.++
T Consensus 75 ~~l~~~I~~lN~-D~~V~GIlvq~PlP~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~ 152 (281)
T PRK14183 75 KEILETIAMMNN-NPNIDGILVQLPLPKHIDTTKILEAIDP-KKDVDGFHPYNVGRLVTGLDGFVPCTPLGVMELLEEYE 152 (281)
T ss_pred HHHHHHHHHHhC-CCccCeEEEeCCCCCCCCHHHHHhccCc-hhcccccChhhhhHHhcCCCCCCCCcHHHHHHHHHHcC
Confidence 568888899988 323 344443 88899987765555555 458899988776666555555556666553 44567
Q ss_pred cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.++.||+|+|+|.|. +|+.++.+|...|++|++++... .++.+.+++||+|+.++|.++++.++.
T Consensus 153 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T-------------~~l~~~~~~ADIvV~AvGkp~~i~~~~- 218 (281)
T PRK14183 153 IDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT-------------KDLKAHTKKADIVIVGVGKPNLITEDM- 218 (281)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------cCHHHHHhhCCEEEEecCcccccCHHH-
Confidence 789999999999996 99999999999999999885321 256788999999999999999998664
Q ss_pred hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115 184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK 242 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 242 (258)
+|+|+++||+|....+. .. --|.++..........+...++.+.+-|+.+|+.+
T Consensus 219 --vk~gavvIDvGin~~~~--gk-l~GDVd~~~~~~~a~~iTPVPGGVGpvT~a~L~~N 272 (281)
T PRK14183 219 --VKEGAIVIDIGINRTED--GR-LVGDVDFENVAKKCSYITPVPGGVGPMTIAMLLSN 272 (281)
T ss_pred --cCCCcEEEEeeccccCC--CC-eECCccHHHHHhhceEecCCCCCChHHHHHHHHHH
Confidence 69999999999652110 00 11222222233333445666777777776666653
No 61
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.33 E-value=1.7e-11 Score=108.52 Aligned_cols=193 Identities=20% Similarity=0.224 Sum_probs=137.6
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhccc-CCCCCcchhhh---ccCc
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNK-AGPFKPSYYSL---KRST 103 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~---~~~~ 103 (258)
.+++..+..+|. |.+ .|+-|. |+|.++++...-.++.+ ..++++++..+...+.... .+..+|...++ .+.+
T Consensus 76 ~~l~~~I~~LN~-D~~V~GIlvqlPLP~~id~~~i~~~I~p-~KDVDGl~~~N~g~l~~g~~~~~~PcTp~av~~lL~~y 153 (288)
T PRK14171 76 NDLISKINELNL-DNEISGIIVQLPLPSSIDKNKILSAVSP-SKDIDGFHPLNVGYLHSGISQGFIPCTALGCLAVIKKY 153 (288)
T ss_pred HHHHHHHHHHcC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-ccccccCCccchhhhhcCCCCCCcCCCHHHHHHHHHHh
Confidence 568888899988 333 244443 88899988776666665 3588999887766665443 45556666553 4456
Q ss_pred CcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHH
Q psy16115 104 DVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREH 182 (258)
Q Consensus 104 ~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~ 182 (258)
+.++.||+++|||.+. +|+.++.+|...|++|++++.. ..++.+.+++||+++.+.|.++++.++.
T Consensus 154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~-------------T~~L~~~~~~ADIvV~AvGkp~~i~~~~ 220 (288)
T PRK14171 154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK-------------THNLSSITSKADIVVAAIGSPLKLTAEY 220 (288)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEccCCCCccCHHH
Confidence 7789999999999999 9999999999999999998642 2357888999999999999999998664
Q ss_pred HhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115 183 MDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP 243 (258)
Q Consensus 183 l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 243 (258)
+|+|+++||+|....+. .. .-|.++..........++..+|.+.+-|+.+|+.+-
T Consensus 221 ---vk~GavVIDvGin~~~~--gk-l~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~ 275 (288)
T PRK14171 221 ---FNPESIVIDVGINRISG--NK-IIGDVDFENVKSKVKYITPVPGGIGPMTIAFLLKNT 275 (288)
T ss_pred ---cCCCCEEEEeeccccCC--CC-eECCccHHHHHhhceEeCCCCCCcHHHHHHHHHHHH
Confidence 69999999999652100 00 112233233333344456668888877777777643
No 62
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.32 E-value=2.8e-11 Score=106.98 Aligned_cols=191 Identities=23% Similarity=0.236 Sum_probs=137.0
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.+++..+..+|. |.+ .++-|. |+|+++++...-.++.+ ..++++++..+...+.....+..+|+..++ .+.++
T Consensus 76 ~el~~~I~~lN~-D~~V~GIlvqlPlP~~id~~~i~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~ 153 (284)
T PRK14193 76 EELNAVIDELNA-DPACTGYIVQLPLPKHLDENAVLERIDP-AKDADGLHPTNLGRLVLNEPAPLPCTPRGIVHLLRRYD 153 (284)
T ss_pred HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhcCCc-ccCccCCChhhhhHHhCCCCCCCCCCHHHHHHHHHHhC
Confidence 568888899988 333 344443 88899988766555555 458999988776666555555556666653 34567
Q ss_pred cccCCCEEEEEcCch-HHHHHHHHHHh--CCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHH
Q psy16115 105 VMFGGKQVVLCGYGE-VGKGCCQSLKG--LGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTRE 181 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~--~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~ 181 (258)
.++.||+++|+|.+. +|+.++.+|.. .|++|++++.. ..++.+.+++||+++.+.|.++++..+
T Consensus 154 i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~-------------T~~l~~~~k~ADIvV~AvGkp~~i~~~ 220 (284)
T PRK14193 154 VELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG-------------TRDLAAHTRRADIIVAAAGVAHLVTAD 220 (284)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC-------------CCCHHHHHHhCCEEEEecCCcCccCHH
Confidence 789999999999998 99999999988 78999998643 236788899999999999999999866
Q ss_pred HHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115 182 HMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK 242 (258)
Q Consensus 182 ~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 242 (258)
. +|+|+++||+|..... +.-.-|.++ .........+...+|.+.+-|+.+|+.+
T Consensus 221 ~---ik~GavVIDvGin~~~---~gkl~GDvd-~~v~~~a~~iTPVPGGVGp~T~a~L~~N 274 (284)
T PRK14193 221 M---VKPGAAVLDVGVSRAG---DGKLVGDVH-PDVWEVAGAVSPNPGGVGPMTRAFLLTN 274 (284)
T ss_pred H---cCCCCEEEEccccccC---CCcEEeecC-HhHHhhCCEEeCCCCChhHHHHHHHHHH
Confidence 4 6999999999976210 000112222 2233334446777788877777777664
No 63
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.32 E-value=5.3e-12 Score=113.08 Aligned_cols=90 Identities=24% Similarity=0.374 Sum_probs=76.9
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc---CccccccHHH
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT---GNKNVVTREH 182 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~---~~~~~i~~~~ 182 (258)
.|+|+||+|||+|.||+.+|+.|+.+|++|+++++.......+...|+...+++++++.||+|+++. .+.++++++.
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~~ei 92 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYKAEV 92 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHHHHH
Confidence 3699999999999999999999999999999998764444456667887779999999999999984 4567888789
Q ss_pred HhcCCCCcEEEec
Q psy16115 183 MDKMKNGCVVCNM 195 (258)
Q Consensus 183 l~~~k~g~~ivnv 195 (258)
+..||+|++++..
T Consensus 93 l~~MK~GaiL~f~ 105 (335)
T PRK13403 93 EENLREGQMLLFS 105 (335)
T ss_pred HhcCCCCCEEEEC
Confidence 9999999988754
No 64
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.32 E-value=8.6e-12 Score=110.90 Aligned_cols=195 Identities=19% Similarity=0.240 Sum_probs=137.0
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhccc--CCCCCcchhhh---ccC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNK--AGPFKPSYYSL---KRS 102 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~---~~~ 102 (258)
.++++.++.+|. |.+ .++-|. |+|.++++...-.++.+ ..++++++..+...+.... .+..+|+..++ .+.
T Consensus 77 ~el~~~I~~lN~-D~~V~GIivqlPlP~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~ 154 (297)
T PRK14168 77 EELLALIDKYNN-DDSIHGILVQLPLPKHINEKKVLNAIDP-DKDVDGFHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVR 154 (297)
T ss_pred HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-cccccccChhhHHHHhcCCCCCCCcCCCHHHHHHHHHH
Confidence 568888899988 333 344443 88899988766555555 4589999887766554433 34455665553 345
Q ss_pred cCcccCCCEEEEEcCch-HHHHHHHHHHhC----CCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcccc
Q psy16115 103 TDVMFGGKQVVLCGYGE-VGKGCCQSLKGL----GCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNV 177 (258)
Q Consensus 103 ~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~----G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~ 177 (258)
++.++.|++|+|||.+. +|+.++.+|... +++|++++... .++.+.+++||+|+.++|.+++
T Consensus 155 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T-------------~~l~~~~~~ADIvVsAvGkp~~ 221 (297)
T PRK14168 155 SGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS-------------KNLARHCQRADILIVAAGVPNL 221 (297)
T ss_pred hCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC-------------cCHHHHHhhCCEEEEecCCcCc
Confidence 67789999999999999 999999999987 78999985422 3578889999999999999999
Q ss_pred ccHHHHhcCCCCcEEEecCCCCh-hhchh-h-hcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115 178 VTREHMDKMKNGCVVCNMGHSNT-EIDVN-S-LRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK 242 (258)
Q Consensus 178 i~~~~l~~~k~g~~ivnvg~~~~-~~~~~-~-l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 242 (258)
++.+. +|+|+++||+|.... +..-+ . ..-|.++..........++..++.+.+-|+.+|+.+
T Consensus 222 i~~~~---ik~gavVIDvGin~~~~~~~~g~~~~~GDVdfe~v~~~a~~iTPVPGGVGp~T~a~L~~N 286 (297)
T PRK14168 222 VKPEW---IKPGATVIDVGVNRVGTNESTGKAILSGDVDFDAVKEIAGKITPVPGGVGPMTIAMLMRN 286 (297)
T ss_pred cCHHH---cCCCCEEEecCCCccCccccCCCcceeccccHHHHHhhccEecCCCCCchHHHHHHHHHH
Confidence 98664 699999999997621 10000 0 012333333333444556777788887777777664
No 65
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.32 E-value=2.9e-11 Score=107.78 Aligned_cols=198 Identities=20% Similarity=0.191 Sum_probs=139.4
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.+++..+..+|. |.+ .++-|. |+|.++++...-.++.+ ..++++++..+...+.....+..+|+..++ .+.++
T Consensus 76 ~el~~~i~~lN~-d~~V~GIlvq~Plp~~~~~~~i~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~~ 153 (296)
T PRK14188 76 AELLALIARLNA-DPAIHGILVQLPLPKHLDSEAVIQAIDP-EKDVDGLHVVNAGRLATGETALVPCTPLGCMMLLRRVH 153 (296)
T ss_pred HHHHHHHHHHhC-CCCCcEEEEeCCCCCCCCHHHHHhccCc-ccccccCChhhHHHHhCCCCCCcCCCHHHHHHHHHHhC
Confidence 568888888888 322 244443 88899987765555555 458999988777666555555556666654 34456
Q ss_pred cccCCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEe-CChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHH
Q psy16115 105 VMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITE-IDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREH 182 (258)
Q Consensus 105 ~~l~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d-~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~ 182 (258)
.++.||+|+||| .|.+|+.+|.+|...|++|++++ +++ ++++.+++||+|+.|++.++.+.+.
T Consensus 154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~--------------~l~e~~~~ADIVIsavg~~~~v~~~- 218 (296)
T PRK14188 154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR--------------DLPAVCRRADILVAAVGRPEMVKGD- 218 (296)
T ss_pred CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhhcchh-
Confidence 789999999999 77799999999999999999995 432 4678889999999999999988744
Q ss_pred HhcCCCCcEEEecCCCChhhchh--h--hcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChh
Q psy16115 183 MDKMKNGCVVCNMGHSNTEIDVN--S--LRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSR 246 (258)
Q Consensus 183 l~~~k~g~~ivnvg~~~~~~~~~--~--l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 246 (258)
++|+|+++||+|....+..-. . ---|.++..........++..+|.+.+-|+.+|+.+--.+
T Consensus 219 --~lk~GavVIDvGin~~~~~~~~~g~~~l~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a 284 (296)
T PRK14188 219 --WIKPGATVIDVGINRIPAPEKGEGKTRLVGDVAFAEAAEVAGAITPVPGGVGPMTIACLLANTLTA 284 (296)
T ss_pred --eecCCCEEEEcCCcccCCccccCCCceeeCCCCHHHHHhhccEecCCCCChhHHHHHHHHHHHHHH
Confidence 389999999999762110000 0 0113333333444445577778888888888777754433
No 66
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.32 E-value=3.3e-11 Score=106.41 Aligned_cols=191 Identities=18% Similarity=0.234 Sum_probs=134.8
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcc-cCCCCCcchhhh---ccCc
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLN-KAGPFKPSYYSL---KRST 103 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~---~~~~ 103 (258)
.+++..++.+|. |.+ .++-|. |+|+++++...--++.+ ..++++++..+...+... ..+..+|+..++ .+.+
T Consensus 75 ~el~~~I~~lN~-D~~V~GIivq~PlP~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~g~~~~~~PcTp~aii~lL~~y 152 (282)
T PRK14180 75 SELLELIDQLNN-DSSVHAILVQLPLPAHINKNNVIYSIKP-EKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREY 152 (282)
T ss_pred HHHHHHHHHHhC-CCCCCeEEEcCCCCCCCCHHHHHhhcCc-cccccccChhhHHHHhcCCCCCcCCCCHHHHHHHHHHh
Confidence 578888999988 323 244443 88999987765555555 458999988776655443 344456666553 3446
Q ss_pred CcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHH
Q psy16115 104 DVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREH 182 (258)
Q Consensus 104 ~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~ 182 (258)
+.++.||+|+|+|.+. +|+.++.+|...|++|++++... .++.+.+++||+++.+.|.++++.++
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T-------------~dl~~~~k~ADIvIsAvGkp~~i~~~- 218 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT-------------TDLKSHTTKADILIVAVGKPNFITAD- 218 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC-------------CCHHHHhhhcCEEEEccCCcCcCCHH-
Confidence 7789999999999999 99999999999999999996432 25778899999999999999999865
Q ss_pred HhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115 183 MDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK 242 (258)
Q Consensus 183 l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 242 (258)
++|+|+++||+|..-.+ .. --|.++..........++..+|.+.+-|+.+|+.+
T Consensus 219 --~vk~gavVIDvGin~~~---gk-l~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N 272 (282)
T PRK14180 219 --MVKEGAVVIDVGINHVD---GK-IVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYN 272 (282)
T ss_pred --HcCCCcEEEEecccccC---Cc-eeCCcCHHHHHhhccEeccCCCChhHHHHHHHHHH
Confidence 46999999999975211 00 11222222222333446666777777777766654
No 67
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=99.31 E-value=2.7e-11 Score=109.69 Aligned_cols=195 Identities=19% Similarity=0.191 Sum_probs=137.8
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcc--cCCCCCcchhhh---ccC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLN--KAGPFKPSYYSL---KRS 102 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~---~~~ 102 (258)
.++++.++.+|. |.+ .++-|. |+|.++++...--++.+ ..++++++..+...+... ..+..+|...++ .+.
T Consensus 147 ~ell~~I~~LN~-D~~V~GIlVQlPLP~~id~~~i~~aI~P-~KDVDGl~p~N~G~L~~g~~~~~f~PCTp~avielL~~ 224 (364)
T PLN02616 147 QEVLKFISGFNN-DPSVHGILVQLPLPSHMDEQNILNAVSI-EKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHR 224 (364)
T ss_pred HHHHHHHHHHcC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCcccCChhhhHHHhcCCCCCCCCCCCHHHHHHHHHH
Confidence 468888888988 433 344443 88999988766555555 458999988777665543 344456666553 344
Q ss_pred cCcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHH
Q psy16115 103 TDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTRE 181 (258)
Q Consensus 103 ~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~ 181 (258)
++.++.||+|+|||.+. +|+.++.+|...|++|++++.. ..++.+.+++|||||.+.|.+++++++
T Consensus 225 y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~-------------T~nl~~~~r~ADIVIsAvGkp~~i~~d 291 (364)
T PLN02616 225 YNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------TKNPEEITREADIIISAVGQPNMVRGS 291 (364)
T ss_pred hCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC-------------CCCHHHHHhhCCEEEEcCCCcCcCCHH
Confidence 67789999999999999 9999999999999999998542 236788899999999999999999866
Q ss_pred HHhcCCCCcEEEecCCCChhhch---hhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115 182 HMDKMKNGCVVCNMGHSNTEIDV---NSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK 242 (258)
Q Consensus 182 ~l~~~k~g~~ivnvg~~~~~~~~---~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 242 (258)
. +|+|+++||+|....+..- ..---|.++..........++..+|.+.+-|+.+|+.+
T Consensus 292 ~---vK~GAvVIDVGIn~~~~~~~~~g~klvGDVdfe~v~~~as~ITPVPGGVGpmTva~Ll~N 352 (364)
T PLN02616 292 W---IKPGAVVIDVGINPVEDASSPRGYRLVGDVCYEEACKVASAVTPVPGGVGPMTIAMLLSN 352 (364)
T ss_pred H---cCCCCEEEeccccccccccccCCCeEEecCcHHHHHhhccccCCCCCchHHHHHHHHHHH
Confidence 4 6999999999976211000 00011223333333344456777787777777777664
No 68
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=99.31 E-value=3.4e-11 Score=108.57 Aligned_cols=195 Identities=18% Similarity=0.166 Sum_probs=135.9
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcc--cCCCCCcchhhh---ccC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLN--KAGPFKPSYYSL---KRS 102 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~---~~~ 102 (258)
.+++..++.+|. |.+ .|+-|. |+|.++++...-.++.+ ..++++++..+...+... ..+..+|...++ .+.
T Consensus 130 ~ell~~I~~lN~-D~~V~GIlVQlPLP~hid~~~i~~~I~p-~KDVDGl~p~N~G~L~~~~~~~~~~PCTp~avi~LL~~ 207 (345)
T PLN02897 130 GQILSALRKFNE-DTSIHGILVQLPLPQHLDESKILNMVRL-EKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIR 207 (345)
T ss_pred HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCccCCCHHHHHHHhcCCCCCCCcCCCHHHHHHHHHH
Confidence 468889999988 433 344443 88999988766555555 458999988777666442 234456666553 344
Q ss_pred cCcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHH
Q psy16115 103 TDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTRE 181 (258)
Q Consensus 103 ~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~ 181 (258)
++.++.||+++|||.+. +|+.++.+|...|++|++++... .++.+.+++|||||.+.|.+++++.+
T Consensus 208 ~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T-------------~nl~~~~~~ADIvIsAvGkp~~v~~d 274 (345)
T PLN02897 208 SGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT-------------KDPEQITRKADIVIAAAGIPNLVRGS 274 (345)
T ss_pred hCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC-------------CCHHHHHhhCCEEEEccCCcCccCHH
Confidence 67789999999999999 99999999999999999986422 25788899999999999999999866
Q ss_pred HHhcCCCCcEEEecCCCChhhch---hhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115 182 HMDKMKNGCVVCNMGHSNTEIDV---NSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK 242 (258)
Q Consensus 182 ~l~~~k~g~~ivnvg~~~~~~~~---~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 242 (258)
. +|+|+++||+|....+... ..---|.++..........+...+|.+.+-|+.+|+.+
T Consensus 275 ~---vk~GavVIDVGin~~~~~~~~~g~klvGDVdfe~v~~~as~iTPVPGGVGpmTvamLm~N 335 (345)
T PLN02897 275 W---LKPGAVVIDVGTTPVEDSSCEFGYRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLCN 335 (345)
T ss_pred H---cCCCCEEEEccccccccccccCCCeeEecccHHHHHhhccccCCCCCchhHHHHHHHHHH
Confidence 4 6999999999976211100 00011222222222333445666777777777776664
No 69
>KOG0067|consensus
Probab=99.30 E-value=4.1e-12 Score=113.98 Aligned_cols=196 Identities=15% Similarity=0.195 Sum_probs=139.9
Q ss_pred CCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccC--cCcccCCCEEEEEcCchHHH
Q psy16115 45 RYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRS--TDVMFGGKQVVLCGYGEVGK 122 (258)
Q Consensus 45 ~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~l~g~~V~IiG~G~IG~ 122 (258)
+.++.|+++|...-+++|+-++..++..++.-. -.+ ...+.|.|...+...... ......|.+.+++|+|++|+
T Consensus 116 eL~iavC~ip~~~Ve~~a~stl~hIl~l~rrnt-w~c---q~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~ 191 (435)
T KOG0067|consen 116 ELGIAVCNIPSDAVEETADSTLCHILNLYRRNT-WLC---QALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQ 191 (435)
T ss_pred hheeeeecccchhHHHHHHHHHHHHHhhhcccc-hhh---hhhcccceeechhhhhhhhhccccccccceeeeccccccc
Confidence 447889999999888888876655543333211 001 112334433222111000 01125899999999999999
Q ss_pred HHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCC
Q psy16115 123 GCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGH 197 (258)
Q Consensus 123 ~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~ 197 (258)
.++..+++||..|+.||.....-. .+.+|.. +.++.+++-++|.+.++ ..+.+.++.-.++.|+.|+.++|.++
T Consensus 192 av~~~A~afg~~~ifydp~~~~g~-~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~ 270 (435)
T KOG0067|consen 192 AVALRAKAFGFVVIFYDPYLIDGI-DKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTAR 270 (435)
T ss_pred eehhhhhcccceeeeecchhhhhh-hhhcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecc
Confidence 999999999999999987654321 1223443 34688889999999997 35778898788999999999999999
Q ss_pred C---ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHHHhh
Q psy16115 198 S---NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQ 253 (258)
Q Consensus 198 ~---~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 253 (258)
+ |++++-++|++|+++... .+.+..+.++....+ +..||+++|+++.-
T Consensus 271 gglvdekaLaqaLk~G~i~~aa------~~~~~~~~l~d~pn~--ic~~~ta~~~e~~~ 321 (435)
T KOG0067|consen 271 GGLVDEKALAQALKSGRIRGAA------PRSFKQGPLKDAPNL--ICTPHTAWYSEAAS 321 (435)
T ss_pred cccCChHHHHhhhccCceeccc------CcccccccccCCCCC--CCCcccchhhHHHH
Confidence 9 899999999999987654 344667778877654 78899999998753
No 70
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.29 E-value=5.1e-11 Score=105.41 Aligned_cols=195 Identities=19% Similarity=0.242 Sum_probs=134.9
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhccc-CCCCCcchhhh---ccCc
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNK-AGPFKPSYYSL---KRST 103 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~---~~~~ 103 (258)
.+++..++.+|. |.+ .|+-|. |+|.++++...-.++.+ ..++++++..+...+.... .+..+|+..++ .+.+
T Consensus 70 ~el~~~I~~lN~-d~~V~GIlvqlPlP~~i~~~~i~~~I~p-~KDVDGl~p~n~g~l~~g~~~~~~PcTp~avi~lL~~~ 147 (287)
T PRK14181 70 SDILKLIHRLNN-DPNIHGILVQLPLPKHLDAQAILQAISP-DKDVDGLHPVNMGKLLLGETDGFIPCTPAGIIELLKYY 147 (287)
T ss_pred HHHHHHHHHHhC-CCCCCeEEEcCCCCCCcCHHHHHhccCc-ccCcccCChhhHHHHhcCCCCCCCCCCHHHHHHHHHHh
Confidence 568888999988 333 344443 89999988766555555 4589999887766554443 34455665553 3446
Q ss_pred CcccCCCEEEEEcCch-HHHHHHHHHHhC----CCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccc
Q psy16115 104 DVMFGGKQVVLCGYGE-VGKGCCQSLKGL----GCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVV 178 (258)
Q Consensus 104 ~~~l~g~~V~IiG~G~-IG~~~a~~l~~~----G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i 178 (258)
+.++.||+|+|||.+. +|+.++.+|... +++|++++... .++.+.+++||+|+.+.|.++++
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T-------------~~l~~~~~~ADIvV~AvG~p~~i 214 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS-------------ENLTEILKTADIIIAAIGVPLFI 214 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 7789999999999999 999999999988 78999986422 25788899999999999999999
Q ss_pred cHHHHhcCCCCcEEEecCCCChhhchhh--hcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115 179 TREHMDKMKNGCVVCNMGHSNTEIDVNS--LRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK 242 (258)
Q Consensus 179 ~~~~l~~~k~g~~ivnvg~~~~~~~~~~--l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 242 (258)
.++. +|+|+++||+|.......-.. ---|.++..........++..+|.+.+-|+.+|+.+
T Consensus 215 ~~~~---ik~GavVIDvGin~~~~~~~~g~kl~GDVd~e~~~~~a~~iTPVPGGVGp~T~a~L~~N 277 (287)
T PRK14181 215 KEEM---IAEKAVIVDVGTSRVPAANPKGYILVGDVDFNNVVPKCRAITPVPGGVGPMTVAMLMRN 277 (287)
T ss_pred CHHH---cCCCCEEEEecccccccccCCCCeeEeccchHHHHhhcccccCCCCchHHHHHHHHHHH
Confidence 8664 699999999997621100000 011222222233333446666777777777666654
No 71
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=99.27 E-value=1.1e-11 Score=117.92 Aligned_cols=138 Identities=20% Similarity=0.241 Sum_probs=100.1
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc--CH---------------HH-------H-
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--KL---------------NE-------V- 161 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~--~l---------------~e-------~- 161 (258)
..+++|+|+|+|.+|+..++.++.+|++|+++|+++.+++.+.++|++.. +. ++ .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 47999999999999999999999999999999999999999989887632 11 01 1
Q ss_pred ---HHhCCeeeeccCcc-----ccccHHHHhcCCCCcEEEecCCC---Chhhc--hhhhcC-CCceeeeeccCcceeecC
Q psy16115 162 ---IRTVDIVVTATGNK-----NVVTREHMDKMKNGCVVCNMGHS---NTEID--VNSLRT-PDLTWEKVRSQVDHVIWP 227 (258)
Q Consensus 162 ---~~~aDvvi~~~~~~-----~~i~~~~l~~~k~g~~ivnvg~~---~~~~~--~~~l~~-~~i~~~~~~~~~~~~~~~ 227 (258)
++++|++|+|++.+ .++.++.++.||+|++++++|.. +.+.. .+.+.. +++++.++...+.+|..
T Consensus 243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n~P~~~p~- 321 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTDLPSRLPT- 321 (509)
T ss_pred HhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeCCCchhHHH-
Confidence 13589999998753 36667999999999999999973 22222 233443 67888887666555442
Q ss_pred CCccCCCceeEEecCCChhHHHHHh
Q psy16115 228 DVNLKNNTVIDLFRKPKSRLYLEIL 252 (258)
Q Consensus 228 ~~~l~~~~~~~l~~~~~~~~~~~~~ 252 (258)
+...|+.++..++...|+
T Consensus 322 -------~As~lla~~~i~l~~lIt 339 (509)
T PRK09424 322 -------QSSQLYGTNLVNLLKLLC 339 (509)
T ss_pred -------HHHHHHHhCCccHHHHhc
Confidence 234444445555555554
No 72
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.27 E-value=2.6e-11 Score=107.91 Aligned_cols=196 Identities=20% Similarity=0.265 Sum_probs=135.4
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhccc--CCCCCcchhhh---ccC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNK--AGPFKPSYYSL---KRS 102 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~---~~~ 102 (258)
.++++.++.+|. |.+ .++-|. |+|.++++...-.++.+ ..++++++..+...+.... .+..+|+..++ .+.
T Consensus 75 ~el~~~I~~lN~-D~~V~GIlvq~Plp~~id~~~i~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~ 152 (295)
T PRK14174 75 EHLLKKIEDLNN-DPDVHGILVQQPLPKQIDEFAVTLAIDP-AKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGR 152 (295)
T ss_pred HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhcCCc-cccccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHH
Confidence 578889999988 322 244443 88999988866555555 4589999877665554332 34455666553 344
Q ss_pred cCcccCCCEEEEEcCch-HHHHHHHHHHh----CCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcccc
Q psy16115 103 TDVMFGGKQVVLCGYGE-VGKGCCQSLKG----LGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNV 177 (258)
Q Consensus 103 ~~~~l~g~~V~IiG~G~-IG~~~a~~l~~----~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~ 177 (258)
++.++.||+|+|||.+. +|+.++.+|.. .|++|+.++.+. .++.+.+++||++|.+.+.+++
T Consensus 153 y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t-------------~~l~~~~~~ADIvI~Avg~~~l 219 (295)
T PRK14174 153 YNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT-------------KDIPSYTRQADILIAAIGKARF 219 (295)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc-------------hhHHHHHHhCCEEEEecCccCc
Confidence 57789999999999999 99999999987 688999986543 2478889999999999999999
Q ss_pred ccHHHHhcCCCCcEEEecCCCChhhchh--h-hcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115 178 VTREHMDKMKNGCVVCNMGHSNTEIDVN--S-LRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP 243 (258)
Q Consensus 178 i~~~~l~~~k~g~~ivnvg~~~~~~~~~--~-l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 243 (258)
+..+.+ |+|+++||+|....+.... . -.-|.++..........++..+|.+.+-|+.+|+.+-
T Consensus 220 i~~~~v---k~GavVIDVgi~~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl 285 (295)
T PRK14174 220 ITADMV---KPGAVVIDVGINRIEDPSTKSGYRLVGDVDYEGVSAKASAITPVPGGVGPMTIAMLLKNT 285 (295)
T ss_pred cCHHHc---CCCCEEEEeeccccccccccCCCceECCcCHHHHHhhccEecCCCCCchHHHHHHHHHHH
Confidence 987764 9999999999762110000 0 0112223223333344466667888877777777643
No 73
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=99.24 E-value=1.9e-11 Score=111.22 Aligned_cols=139 Identities=13% Similarity=0.147 Sum_probs=100.9
Q ss_pred CCCEEEEEcCchHHHHHHHHHHh-CC-CEEEEEeCChhhHHHHHhCCCcccCHHHHHH--hCCeeeeccC---ccccccH
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKG-LG-CVIYITEIDPICALQACMDGFSVVKLNEVIR--TVDIVVTATG---NKNVVTR 180 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~-~G-~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~--~aDvvi~~~~---~~~~i~~ 180 (258)
.|++|+|+|+|.||+.+++.++. +| .+|+++|+++.+++.+++.+.... .++..+ +.|+++.++| +...++
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~-~~~~~~~~g~d~viD~~G~~~~~~~~~- 240 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYL-IDDIPEDLAVDHAFECVGGRGSQSAIN- 240 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceee-hhhhhhccCCcEEEECCCCCccHHHHH-
Confidence 68999999999999999999986 55 579999999988877766554321 222222 4799999998 445665
Q ss_pred HHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeeeccCc-ceeecCCCccCCCceeEEecCC---ChhHHHHHhhh
Q psy16115 181 EHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVRSQV-DHVIWPDVNLKNNTVIDLFRKP---KSRLYLEILQT 254 (258)
Q Consensus 181 ~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~---~~~~~~~~~~~ 254 (258)
+.++.++++++++.+|.. +.+.....+..+++++.++.... ++|. .++.++.++ +..+...|+|+
T Consensus 241 ~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~i~~~ 311 (341)
T cd08237 241 QIIDYIRPQGTIGLMGVSEYPVPINTRMVLEKGLTLVGSSRSTREDFE---------RAVELLSRNPEVAEYLRKLVGGV 311 (341)
T ss_pred HHHHhCcCCcEEEEEeecCCCcccCHHHHhhCceEEEEecccCHHHHH---------HHHHHHHhCCcccCChHHHhccc
Confidence 789999999999999875 22334444566788888765432 3354 455556555 34688999999
Q ss_pred cCC
Q psy16115 255 CPL 257 (258)
Q Consensus 255 ~~~ 257 (258)
+||
T Consensus 312 ~~l 314 (341)
T cd08237 312 FPV 314 (341)
T ss_pred ccc
Confidence 997
No 74
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.24 E-value=8.6e-11 Score=105.31 Aligned_cols=111 Identities=19% Similarity=0.308 Sum_probs=87.2
Q ss_pred CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc---CHHHHHHhCCeeeeccCccccccH
Q psy16115 104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV---KLNEVIRTVDIVVTATGNKNVVTR 180 (258)
Q Consensus 104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~---~l~e~~~~aDvvi~~~~~~~~i~~ 180 (258)
+..+.|++|+|+|+|.+|+.+++.|+.+|++|+++|+++.+...+...|+... ++.+.+.++|+||.++. ..++++
T Consensus 147 ~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p-~~~i~~ 225 (296)
T PRK08306 147 PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIP-ALVLTK 225 (296)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCC-hhhhhH
Confidence 34578999999999999999999999999999999999887767777777644 45677789999999864 356777
Q ss_pred HHHhcCCCCcEEEecCCCChhhchhhhcCCCceee
Q psy16115 181 EHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWE 215 (258)
Q Consensus 181 ~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~ 215 (258)
+.++.|+++++++|++..+-..+++..+...+...
T Consensus 226 ~~l~~~~~g~vIIDla~~pggtd~~~a~~~Gv~~~ 260 (296)
T PRK08306 226 EVLSKMPPEALIIDLASKPGGTDFEYAEKRGIKAL 260 (296)
T ss_pred HHHHcCCCCcEEEEEccCCCCcCeeehhhCCeEEE
Confidence 88999999999999998732233344444444444
No 75
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=99.17 E-value=1e-10 Score=105.63 Aligned_cols=146 Identities=17% Similarity=0.149 Sum_probs=108.2
Q ss_pred CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115 47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ 126 (258)
Q Consensus 47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~ 126 (258)
...+.++|+.++.+.|+-.+..-....+.+ ++. .--+|++|+|+|+|-+|...+|
T Consensus 130 ~~~~~~iP~~~d~~~aApllCaGiT~y~al-----------------------k~~--~~~pG~~V~I~G~GGlGh~avQ 184 (339)
T COG1064 130 ARYVVKIPEGLDLAEAAPLLCAGITTYRAL-----------------------KKA--NVKPGKWVAVVGAGGLGHMAVQ 184 (339)
T ss_pred hHHeEECCCCCChhhhhhhhcCeeeEeeeh-----------------------hhc--CCCCCCEEEEECCcHHHHHHHH
Confidence 456789999998887765322111111111 110 0127999999999999999999
Q ss_pred HHHhCCCEEEEEeCChhhHHHHHhCCCccc-C-----H-HHHHHhCCeeeeccCccccccHHHHhcCCCCcEEEecCCCC
Q psy16115 127 SLKGLGCVIYITEIDPICALQACMDGFSVV-K-----L-NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN 199 (258)
Q Consensus 127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~-----l-~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~ 199 (258)
.++++|++|+++|+++++++.|+++|++.. + . +++-+.+|+++.+.+ ...++ +.++.+|++++++-+|...
T Consensus 185 ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~-~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 185 YAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLE-PSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred HHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHH-HHHHHHhcCCEEEEECCCC
Confidence 999999999999999999999999988632 1 1 222233999999998 88886 8999999999999999883
Q ss_pred -hh---hchhhhcCCCceeeeecc
Q psy16115 200 -TE---IDVNSLRTPDLTWEKVRS 219 (258)
Q Consensus 200 -~~---~~~~~l~~~~i~~~~~~~ 219 (258)
.+ .....+..+++++.++.-
T Consensus 263 ~~~~~~~~~~~li~~~~~i~GS~~ 286 (339)
T COG1064 263 GGPIPLLPAFLLILKEISIVGSLV 286 (339)
T ss_pred CcccCCCCHHHhhhcCeEEEEEec
Confidence 22 234557778888887743
No 76
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=99.14 E-value=3.4e-11 Score=110.70 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=105.1
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc------CHHHHHH-----hCCeeeeccCcc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV------KLNEVIR-----TVDIVVTATGNK 175 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~-----~aDvvi~~~~~~ 175 (258)
.|++|+|.|.|.+|..+++.++..|+ +|++++.++.++..+++.|++.. ++.+.+. ..|+++.|++..
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~ 270 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV 270 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence 78999999999999999999999999 59999999999888888887421 1222222 379999999877
Q ss_pred ccccHHHHhcCCCCcEEEecCCCC--h--hhchhhhcCCCceeeeeccCc----ceeecCCCccCCCceeEEecCCChhH
Q psy16115 176 NVVTREHMDKMKNGCVVCNMGHSN--T--EIDVNSLRTPDLTWEKVRSQV----DHVIWPDVNLKNNTVIDLFRKPKSRL 247 (258)
Q Consensus 176 ~~i~~~~l~~~k~g~~ivnvg~~~--~--~~~~~~l~~~~i~~~~~~~~~----~~~~~~~~~l~~~~~~~l~~~~~~~~ 247 (258)
..+. ..++.+++++.++.+|... . ......+..+++++.++.... +.+. .++.|+.+++.++
T Consensus 271 ~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~---------~~~~l~~~g~i~~ 340 (371)
T cd08281 271 PALE-TAYEITRRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGSYMGSCVPRRDIP---------RYLALYLSGRLPV 340 (371)
T ss_pred HHHH-HHHHHHhcCCEEEEEccCCCCceeeecHHHHhhcCCEEEEEecCCCChHHHHH---------HHHHHHHcCCCCc
Confidence 7775 7889999999999998652 1 233344566777777764321 1222 4567778888888
Q ss_pred HHHHhhhcCC
Q psy16115 248 YLEILQTCPL 257 (258)
Q Consensus 248 ~~~~~~~~~~ 257 (258)
...|+|++||
T Consensus 341 ~~~i~~~~~l 350 (371)
T cd08281 341 DKLLTHRLPL 350 (371)
T ss_pred hhheeeeecH
Confidence 8889999886
No 77
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.13 E-value=1.8e-10 Score=102.45 Aligned_cols=191 Identities=19% Similarity=0.231 Sum_probs=124.3
Q ss_pred hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115 30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD 104 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 104 (258)
.+++..++.++. +.. .|+.|. |+|.+++....--.+ .-..++++++......+.........++..++ .+.++
T Consensus 77 ~~l~~~i~~Ln~-d~~v~Gi~VqlPlp~~i~~~~~ld~I-~~aKDVdg~n~~n~G~l~~~~~~~~p~T~~gii~~L~~~~ 154 (283)
T PRK14192 77 EQLLAKIEELNA-NPDVHGILLQHPVPAQIDERACFDAI-SLAKDVDGVTCLGFGRMAMGEAAYGSATPAGIMRLLKAYN 154 (283)
T ss_pred HHHHHHHHHHhC-CCCCCEEEEeCCCccccCHHHHHhcc-CHHHhcCCCCccccCccccCCCcccCCcHHHHHHHHHHcC
Confidence 457777788877 322 356665 888887664333333 44557777765432111111111223333443 22456
Q ss_pred cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.++.|++|+|+|.|. +|++++.+|...|++|+++++.. .++.+.++++|+||.|++.++.++.+
T Consensus 155 i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t-------------~~L~~~~~~aDIvI~AtG~~~~v~~~-- 219 (283)
T PRK14192 155 IELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT-------------QNLPELVKQADIIVGAVGKPELIKKD-- 219 (283)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc-------------hhHHHHhccCCEEEEccCCCCcCCHH--
Confidence 788999999999998 99999999999999999998632 24566778999999999988888754
Q ss_pred hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115 184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK 242 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 242 (258)
++++|++++|+|....+. .+ -|.++..........++..++.+.+-|+.+|+.+
T Consensus 220 -~lk~gavViDvg~n~~~~---~~-~GDvd~~~~~~~a~~itPvPGGVGp~T~a~L~~n 273 (283)
T PRK14192 220 -WIKQGAVVVDAGFHPRDG---GG-VGDIELQGIEEIASAYTPVPGGVGPMTINTLIRQ 273 (283)
T ss_pred -HcCCCCEEEEEEEeecCC---CC-cccccHHHhhccceEeCCCCCcChHHHHHHHHHH
Confidence 479999999999763210 11 2334433333344445666777777777766654
No 78
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=99.13 E-value=1.3e-10 Score=95.77 Aligned_cols=81 Identities=26% Similarity=0.434 Sum_probs=69.5
Q ss_pred cccCCCEEEEEcCchH-HHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 105 VMFGGKQVVLCGYGEV-GKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~I-G~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.++.|++|+|+|+|.+ |..+++.|+..|++|++++++. .++.+.+.++|+||.+++.+++++.+.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~-------------~~l~~~l~~aDiVIsat~~~~ii~~~~- 105 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT-------------KNLKEHTKQADIVIVAVGKPGLVKGDM- 105 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc-------------hhHHHHHhhCCEEEEcCCCCceecHHH-
Confidence 4589999999999985 9999999999999999998763 246678999999999999988888664
Q ss_pred hcCCCCcEEEecCCC-Chh
Q psy16115 184 DKMKNGCVVCNMGHS-NTE 201 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~-~~~ 201 (258)
++++.+++|+|.+ +.+
T Consensus 106 --~~~~~viIDla~prdvd 122 (168)
T cd01080 106 --VKPGAVVIDVGINRVPD 122 (168)
T ss_pred --ccCCeEEEEccCCCccc
Confidence 6889999999998 544
No 79
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.10 E-value=5.1e-10 Score=91.68 Aligned_cols=135 Identities=13% Similarity=0.170 Sum_probs=87.4
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCcccccc---HH--HH
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVT---RE--HM 183 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~---~~--~l 183 (258)
++|++||+|.||..+|+.|...|.+|++||+++++.....+.|.. ..++.++++++|+|++|......+. .. .+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 589999999999999999999999999999999988877777876 4589999999999999854432221 12 56
Q ss_pred hcCCCCcEEEecCCCChh---hchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHH
Q psy16115 184 DKMKNGCVVCNMGHSNTE---IDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYL 249 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~~~---~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 249 (258)
+.+++|.++||++..+.+ ...+.+....+.+.+.. ... .......++...++.+++..|.+
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap-V~G----g~~~a~~g~l~~~~gG~~~~~~~ 145 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAP-VSG----GPPGAEEGTLTIMVGGDEEAFER 145 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEE-EES----HHHHHHHTTEEEEEES-HHHHHH
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccceeeeee-eec----ccccccccceEEEccCCHHHHHH
Confidence 778999999999987332 22344444445443331 100 00112234666677766665543
No 80
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=99.06 E-value=1.2e-10 Score=105.32 Aligned_cols=140 Identities=17% Similarity=0.197 Sum_probs=102.1
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCccc-C-----HHHH---HH--hCCeeeeccCcc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV-K-----LNEV---IR--TVDIVVTATGNK 175 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~-~-----l~e~---~~--~aDvvi~~~~~~ 175 (258)
.|++|+|+|.|.+|+.+++.++.+|++ |+++++++++...+.+.|++.. + .+++ .. ..|+++.+++..
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 242 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT 242 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence 699999999999999999999999998 9999999888877777776421 1 1122 22 479999999887
Q ss_pred ccccHHHHhcCCCCcEEEecCCC-Chhhc-hhhhcCCCceeeeeccCc-ceeecCCCccCCCceeEEecCCChhHHHHHh
Q psy16115 176 NVVTREHMDKMKNGCVVCNMGHS-NTEID-VNSLRTPDLTWEKVRSQV-DHVIWPDVNLKNNTVIDLFRKPKSRLYLEIL 252 (258)
Q Consensus 176 ~~i~~~~l~~~k~g~~ivnvg~~-~~~~~-~~~l~~~~i~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 252 (258)
..+. +.++.++++++++.+|.. +.... ...+..+++++.++.... +.+. .++.++.+++..+...|+
T Consensus 243 ~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~---------~~~~~~~~g~i~~~~~i~ 312 (339)
T cd08239 243 AARR-LALEAVRPWGRLVLVGEGGELTIEVSNDLIRKQRTLIGSWYFSVPDME---------ECAEFLARHKLEVDRLVT 312 (339)
T ss_pred HHHH-HHHHHhhcCCEEEEEcCCCCcccCcHHHHHhCCCEEEEEecCCHHHHH---------HHHHHHHcCCCChhHeEE
Confidence 7664 778899999999999875 22222 234455667777664432 2343 456666777777777888
Q ss_pred hhcCC
Q psy16115 253 QTCPL 257 (258)
Q Consensus 253 ~~~~~ 257 (258)
+++||
T Consensus 313 ~~~~l 317 (339)
T cd08239 313 HRFGL 317 (339)
T ss_pred EEecH
Confidence 88875
No 81
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.05 E-value=1.5e-10 Score=103.85 Aligned_cols=138 Identities=14% Similarity=0.101 Sum_probs=101.3
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcccCHHH-HHHhCCeeeeccCccccccHHHHhc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVVKLNE-VIRTVDIVVTATGNKNVVTREHMDK 185 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~~l~e-~~~~aDvvi~~~~~~~~i~~~~l~~ 185 (258)
.|++++|+|+|.||...++.++.+|++ |+++|.++.++..+..... .+..+ .-...|++++|+|....++ +.++.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~--i~~~~~~~~g~Dvvid~~G~~~~~~-~~~~~ 220 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--LDPEKDPRRDYRAIYDASGDPSLID-TLVRR 220 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc--cChhhccCCCCCEEEECCCCHHHHH-HHHHh
Confidence 688999999999999999999999997 6678888877766544322 22222 1135799999999877775 78999
Q ss_pred CCCCcEEEecCCC--ChhhchhhhcCCCceeeeeccCc-ceeecCCCccCCCceeEEecCCChhHHHHHhhhcCC
Q psy16115 186 MKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVRSQV-DHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTCPL 257 (258)
Q Consensus 186 ~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 257 (258)
++++++++.+|.. +.+.....+..+++++.++.... +.|. .++.|+.+++.++...|+|++||
T Consensus 221 l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~l~~~g~i~~~~~it~~~~l 286 (308)
T TIGR01202 221 LAKGGEIVLAGFYTEPVNFDFVPAFMKEARLRIAAEWQPGDLH---------AVRELIESGALSLDGLITHQRPA 286 (308)
T ss_pred hhcCcEEEEEeecCCCcccccchhhhcceEEEEecccchhHHH---------HHHHHHHcCCCChhhccceeecH
Confidence 9999999999875 22333334445667777654432 3344 67777888888888889999886
No 82
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.03 E-value=3.1e-09 Score=94.20 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=98.3
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh-HHHHHhCCCc-ccCHHHHHHhCCeeeeccCccc----ccc--HH
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQACMDGFS-VVKLNEVIRTVDIVVTATGNKN----VVT--RE 181 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~-~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~----~i~--~~ 181 (258)
.+|++||+|.||..+|++|...|..|.+||+++++ .+.+...|.. ..++.+.++.+|+||+|..... ++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 37999999999999999999999999999999988 5556666776 4578899999999999954433 221 23
Q ss_pred HHhcCCCCcEEEecCCCChh---hchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHH
Q psy16115 182 HMDKMKNGCVVCNMGHSNTE---IDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYL 249 (258)
Q Consensus 182 ~l~~~k~g~~ivnvg~~~~~---~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 249 (258)
.++.+|+|.++||++..+.+ .....++.+.+...+. |... -...-.+++...|+-+++..|.+
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDA-PVsG----g~~~A~~GtLtimvGG~~~~f~r 146 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDA-PVSG----GVPGAAAGTLTIMVGGDAEAFER 146 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEec-CccC----CchhhhhCceEEEeCCCHHHHHH
Confidence 56778999999999987322 2344666665554433 2111 11234567888888888887776
No 83
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=99.02 E-value=3.1e-09 Score=88.87 Aligned_cols=91 Identities=21% Similarity=0.292 Sum_probs=70.5
Q ss_pred cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH-HHhCCCcc---cC----HHHHHHhCCeeeeccCcc
Q psy16115 105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDGFSV---VK----LNEVIRTVDIVVTATGNK 175 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~-a~~~g~~~---~~----l~e~~~~aDvvi~~~~~~ 175 (258)
.++.||+|+|||.+. +|+.++.+|...|++|+++|.+...... .....-.. .+ +.+.+++||+||.+.|.+
T Consensus 58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~ 137 (197)
T cd01079 58 NRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSP 137 (197)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCC
Confidence 378999999999999 9999999999999999999864322110 00000111 12 678899999999999999
Q ss_pred cc-ccHHHHhcCCCCcEEEecCCC
Q psy16115 176 NV-VTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 176 ~~-i~~~~l~~~k~g~~ivnvg~~ 198 (258)
++ +..+. +|+|+++||+|..
T Consensus 138 ~~~i~~d~---ik~GavVIDVGi~ 158 (197)
T cd01079 138 NYKVPTEL---LKDGAICINFASI 158 (197)
T ss_pred CCccCHHH---cCCCcEEEEcCCC
Confidence 98 88654 6999999999976
No 84
>PLN02827 Alcohol dehydrogenase-like
Probab=99.00 E-value=1.3e-09 Score=100.64 Aligned_cols=140 Identities=20% Similarity=0.268 Sum_probs=102.8
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcc-c-------CHHHHHH-----hCCeeeeccC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSV-V-------KLNEVIR-----TVDIVVTATG 173 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~-~-------~l~e~~~-----~aDvvi~~~~ 173 (258)
+|++|+|.|.|.+|+.+++.++.+|++ |+++++++.+.+.+++.|++. . +..+.++ ..|+++.++|
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G 272 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVG 272 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECCC
Confidence 799999999999999999999999984 888898888888888888742 1 1222222 4799999999
Q ss_pred ccccccHHHHhcCCCC-cEEEecCCCC--hhhch-hhhcCCCceeeeeccCc----ceeecCCCccCCCceeEEecCCCh
Q psy16115 174 NKNVVTREHMDKMKNG-CVVCNMGHSN--TEIDV-NSLRTPDLTWEKVRSQV----DHVIWPDVNLKNNTVIDLFRKPKS 245 (258)
Q Consensus 174 ~~~~i~~~~l~~~k~g-~~ivnvg~~~--~~~~~-~~l~~~~i~~~~~~~~~----~~~~~~~~~l~~~~~~~l~~~~~~ 245 (258)
....+. +.++.++++ ++++.+|... .+... ..+..+++++.++.... .+|. ..+.++..++.
T Consensus 273 ~~~~~~-~~l~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~---------~~~~~~~~g~i 342 (378)
T PLN02827 273 DTGIAT-TALQSCSDGWGLTVTLGVPKAKPEVSAHYGLFLSGRTLKGSLFGGWKPKSDLP---------SLVDKYMNKEI 342 (378)
T ss_pred ChHHHH-HHHHhhccCCCEEEEECCcCCCccccccHHHHhcCceEEeeecCCCchhhhHH---------HHHHHHHcCCC
Confidence 877675 789999998 9999998762 22222 22444667777653321 1233 45667778888
Q ss_pred hHHHHHhhhcCC
Q psy16115 246 RLYLEILQTCPL 257 (258)
Q Consensus 246 ~~~~~~~~~~~~ 257 (258)
++.+.|+|++||
T Consensus 343 ~~~~~i~~~~~l 354 (378)
T PLN02827 343 MIDEFITHNLSF 354 (378)
T ss_pred ChHHheEEEecH
Confidence 888899999986
No 85
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=99.00 E-value=5.3e-10 Score=102.26 Aligned_cols=140 Identities=19% Similarity=0.156 Sum_probs=102.1
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcc-c-----CHHHHH----H--hCCeeeeccCc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSV-V-----KLNEVI----R--TVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~-~-----~l~e~~----~--~aDvvi~~~~~ 174 (258)
.|++|+|.|.|.+|+.+++.++.+|++ |+++++++.+.+.+++.|++. . +..+.+ . +.|+++.|++.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~ 255 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR 255 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence 689999999999999999999999995 999999999888888888642 1 222222 1 37999999987
Q ss_pred cccccHHHHhcCCCCcEEEecCCCCh----hhchhhhcCCCceeeeeccC----cceeecCCCccCCCceeEEecCCChh
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHSNT----EIDVNSLRTPDLTWEKVRSQ----VDHVIWPDVNLKNNTVIDLFRKPKSR 246 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~~~----~~~~~~l~~~~i~~~~~~~~----~~~~~~~~~~l~~~~~~~l~~~~~~~ 246 (258)
...+. +.++.++++++++.+|.... +.....+..+++++.+.... .+.+. .++.|++.++.+
T Consensus 256 ~~~~~-~~~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------~~~~l~~~g~l~ 325 (358)
T TIGR03451 256 PETYK-QAFYARDLAGTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYGDCLPERDFP---------MLVDLYLQGRLP 325 (358)
T ss_pred HHHHH-HHHHHhccCCEEEEECCCCCCceeeccHHHHhhcCCEEEEeecCCCCcHHHHH---------HHHHHHHcCCCC
Confidence 76775 78889999999999997622 22222344556666654211 11122 466778888888
Q ss_pred HHHHHhhhcCC
Q psy16115 247 LYLEILQTCPL 257 (258)
Q Consensus 247 ~~~~~~~~~~~ 257 (258)
+...|+|++||
T Consensus 326 ~~~~i~~~~~l 336 (358)
T TIGR03451 326 LDAFVTERIGL 336 (358)
T ss_pred chheEEEEecH
Confidence 88888998886
No 86
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=99.00 E-value=2.6e-09 Score=87.17 Aligned_cols=134 Identities=25% Similarity=0.325 Sum_probs=79.6
Q ss_pred CCCCcchhh---hccCcCcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhC
Q psy16115 90 GPFKPSYYS---LKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTV 165 (258)
Q Consensus 90 g~~~~~~~~---~~~~~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~a 165 (258)
+..++...+ +.+.++.++.||+|+|+|.+. +|+.++.+|...|++|+.++.+. .++++.+++|
T Consensus 14 ~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T-------------~~l~~~~~~A 80 (160)
T PF02882_consen 14 GFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT-------------KNLQEITRRA 80 (160)
T ss_dssp SS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS-------------SSHHHHHTTS
T ss_pred CCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC-------------Ccccceeeec
Confidence 334444444 233456789999999999997 99999999999999999997543 3577889999
Q ss_pred CeeeeccCccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEec
Q psy16115 166 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFR 241 (258)
Q Consensus 166 Dvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 241 (258)
|+|+.+.|.++++..+ ++|+|+++||+|.... .-+.-.-|.++..........+...++.+.+-|+..|+.
T Consensus 81 DIVVsa~G~~~~i~~~---~ik~gavVIDvG~~~~--~~~~~~~GDv~~~~~~~~a~~itPvPgGVGplT~a~L~~ 151 (160)
T PF02882_consen 81 DIVVSAVGKPNLIKAD---WIKPGAVVIDVGINYV--PGDGKLVGDVDFESVKEKASAITPVPGGVGPLTVAMLMK 151 (160)
T ss_dssp SEEEE-SSSTT-B-GG---GS-TTEEEEE--CEEE--TTTTEEEESB-HHHHHTTCSEEE-SSSSCHHHHHHHHHH
T ss_pred cEEeeeeccccccccc---cccCCcEEEecCCccc--cccceeeecccHHHhhccceEEeeCCCCccHHHHHHHHH
Confidence 9999999999999755 5799999999997622 000001111222222233333555556666555554443
No 87
>PLN02740 Alcohol dehydrogenase-like
Probab=98.98 E-value=7.6e-10 Score=102.21 Aligned_cols=139 Identities=19% Similarity=0.222 Sum_probs=99.0
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-cC-------HHHHHH-----hCCeeeeccC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-VK-------LNEVIR-----TVDIVVTATG 173 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~~-------l~e~~~-----~aDvvi~~~~ 173 (258)
+|++|+|+|.|.||+.+++.++.+|+ +|+++++++.+.+.+++.|++. .+ +.+.+. ..|+++.+++
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G 277 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAG 277 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence 79999999999999999999999999 5999999999988888888742 11 222222 4899999999
Q ss_pred ccccccHHHHhcCCCC-cEEEecCCCCh--hhchhh--hcCCCceeeeeccCc----ceeecCCCccCCCceeEEecCCC
Q psy16115 174 NKNVVTREHMDKMKNG-CVVCNMGHSNT--EIDVNS--LRTPDLTWEKVRSQV----DHVIWPDVNLKNNTVIDLFRKPK 244 (258)
Q Consensus 174 ~~~~i~~~~l~~~k~g-~~ivnvg~~~~--~~~~~~--l~~~~i~~~~~~~~~----~~~~~~~~~l~~~~~~~l~~~~~ 244 (258)
....+. +.++.++++ ++++.+|.... ...+.. +. +++++.++.... ..|. .++.++.+++
T Consensus 278 ~~~~~~-~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~~-~~~~i~g~~~~~~~~~~~~~---------~~~~~~~~g~ 346 (381)
T PLN02740 278 NVEVLR-EAFLSTHDGWGLTVLLGIHPTPKMLPLHPMELF-DGRSITGSVFGDFKGKSQLP---------NLAKQCMQGV 346 (381)
T ss_pred ChHHHH-HHHHhhhcCCCEEEEEccCCCCceecccHHHHh-cCCeEEEEecCCCCcHHHHH---------HHHHHHHcCC
Confidence 877775 788888886 89999987621 122211 22 345665542211 1233 4556666677
Q ss_pred hhHHHHHhhhcCC
Q psy16115 245 SRLYLEILQTCPL 257 (258)
Q Consensus 245 ~~~~~~~~~~~~~ 257 (258)
.++...|+|++||
T Consensus 347 i~~~~~it~~~~l 359 (381)
T PLN02740 347 VNLDGFITHELPF 359 (381)
T ss_pred CChHHheeEEecH
Confidence 7777788898886
No 88
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=98.98 E-value=2.7e-10 Score=103.29 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=84.3
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-CHHH-HHHhCCeeeeccCccccccHHHHhc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNE-VIRTVDIVVTATGNKNVVTREHMDK 185 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~l~e-~~~~aDvvi~~~~~~~~i~~~~l~~ 185 (258)
.|++|+|.|.|.+|..+++.++.+|++|+++++++++.+.+++.|++.. +..+ .-...|+++.+++....+. ..++.
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~ 243 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGGLVP-PALEA 243 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHHHHH-HHHHh
Confidence 6999999999999999999999999999999999999888999998642 2111 1134788888877766665 78999
Q ss_pred CCCCcEEEecCCC--C-hhhchhhhcCCCceeeeecc
Q psy16115 186 MKNGCVVCNMGHS--N-TEIDVNSLRTPDLTWEKVRS 219 (258)
Q Consensus 186 ~k~g~~ivnvg~~--~-~~~~~~~l~~~~i~~~~~~~ 219 (258)
++++++++.+|.. + .......+..+++++.++..
T Consensus 244 l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~ 280 (329)
T TIGR02822 244 LDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSVTS 280 (329)
T ss_pred hCCCcEEEEEeccCccCCCCCHHHHhhCCcEEEEeec
Confidence 9999999999974 2 22333344455667766543
No 89
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.96 E-value=2.2e-09 Score=87.12 Aligned_cols=89 Identities=22% Similarity=0.366 Sum_probs=68.7
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh-hHHHHHhCCCcccCHHHHHHhCCeeeecc---CccccccHHH
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI-CALQACMDGFSVVKLNEVIRTVDIVVTAT---GNKNVVTREH 182 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~-~~~~a~~~g~~~~~l~e~~~~aDvvi~~~---~~~~~i~~~~ 182 (258)
|++|+|+|||+|..|+..|+.||..|.+|++..+... ....|.+.|++..+..|.++.+|+|++.. ....+..++.
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~~q~~vy~~~I 81 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDEVQPEVYEEEI 81 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HHHHHHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChHHHHHHHHHHH
Confidence 5799999999999999999999999999998877766 56778999999999999999999999974 2344665566
Q ss_pred HhcCCCCcEEEec
Q psy16115 183 MDKMKNGCVVCNM 195 (258)
Q Consensus 183 l~~~k~g~~ivnv 195 (258)
...||+|..++..
T Consensus 82 ~p~l~~G~~L~fa 94 (165)
T PF07991_consen 82 APNLKPGATLVFA 94 (165)
T ss_dssp HHHS-TT-EEEES
T ss_pred HhhCCCCCEEEeC
Confidence 6789999988754
No 90
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.96 E-value=3.8e-09 Score=97.49 Aligned_cols=92 Identities=22% Similarity=0.350 Sum_probs=74.6
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CCCc----c---cCHHHHHHhCCeeeecc---C--
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFS----V---VKLNEVIRTVDIVVTAT---G-- 173 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~----~---~~l~e~~~~aDvvi~~~---~-- 173 (258)
+.+.+|+|+|+|.+|+.+++.++.+|++|+++|+++.+.+.+.. .+.. . .++.+.++++|+||.|+ +
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence 46788999999999999999999999999999999887654432 3321 1 24567778999999985 3
Q ss_pred ccccccHHHHhcCCCCcEEEecCCC
Q psy16115 174 NKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 174 ~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
++.+++++.++.||++++++|+|..
T Consensus 245 ~p~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 245 APKLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred CCcCcCHHHHhcCCCCCEEEEEecC
Confidence 3567888999999999999999864
No 91
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=98.96 E-value=6.5e-10 Score=102.22 Aligned_cols=139 Identities=24% Similarity=0.270 Sum_probs=96.9
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-cC-------HHHHHH-----hCCeeeeccC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-VK-------LNEVIR-----TVDIVVTATG 173 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~~-------l~e~~~-----~aDvvi~~~~ 173 (258)
.|++|+|+|.|.||+.+++.++.+|+ +|+++++++++++.+.+.|++. .+ +.+.+. +.|+++.+++
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G 264 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECIG 264 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 78999999999999999999999999 7999999999988888888742 11 122221 4799999998
Q ss_pred ccccccHHHHhcCCCC-cEEEecCCC--Chhhc--hhhhcCCCceeeeeccC----cceeecCCCccCCCceeEEecCCC
Q psy16115 174 NKNVVTREHMDKMKNG-CVVCNMGHS--NTEID--VNSLRTPDLTWEKVRSQ----VDHVIWPDVNLKNNTVIDLFRKPK 244 (258)
Q Consensus 174 ~~~~i~~~~l~~~k~g-~~ivnvg~~--~~~~~--~~~l~~~~i~~~~~~~~----~~~~~~~~~~l~~~~~~~l~~~~~ 244 (258)
....+. +.++.++++ ++++.+|.. ..+.. ...+..++ .+.++... ..+|. .++.++.+++
T Consensus 265 ~~~~~~-~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~---------~~~~~~~~g~ 333 (368)
T TIGR02818 265 NVNVMR-AALECCHKGWGESIIIGVAGAGQEISTRPFQLVTGR-VWRGSAFGGVKGRTELP---------GIVEQYMKGE 333 (368)
T ss_pred CHHHHH-HHHHHhhcCCCeEEEEeccCCCCcccccHHHHhccc-eEEEeeccCCCcHHHHH---------HHHHHHHCCC
Confidence 776665 788889886 899988864 12221 11122222 23333111 11233 4666777777
Q ss_pred hhHHHHHhhhcCC
Q psy16115 245 SRLYLEILQTCPL 257 (258)
Q Consensus 245 ~~~~~~~~~~~~~ 257 (258)
.++...|+|++||
T Consensus 334 i~~~~~it~~~~l 346 (368)
T TIGR02818 334 IALDDFVTHTMPL 346 (368)
T ss_pred CCchhheeEEecH
Confidence 7888889999987
No 92
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=98.95 E-value=1.7e-09 Score=96.85 Aligned_cols=139 Identities=24% Similarity=0.310 Sum_probs=106.9
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-cCH------H----HHHH-hCCeeeeccCc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-VKL------N----EVIR-TVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~~l------~----e~~~-~aDvvi~~~~~ 174 (258)
+|.+|+|+|+|-+|++..+.++..|+ +|+.+|+++.+++.|+++|++. .+. . ++.. .+|+.|+|+|+
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~ 264 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGN 264 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccCC
Confidence 89999999999999999999999999 5999999999999999999863 222 1 2222 58999999999
Q ss_pred cccccHHHHhcCCCCcEEEecCCC--Chhhchh--hhcCCCceeeeecc----CcceeecCCCccCCCceeEEecCCChh
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS--NTEIDVN--SLRTPDLTWEKVRS----QVDHVIWPDVNLKNNTVIDLFRKPKSR 246 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~--~l~~~~i~~~~~~~----~~~~~~~~~~~l~~~~~~~l~~~~~~~ 246 (258)
.+.+. +.|+...+++..+-+|.. ..++.+. .|..+ -.+.++.- ...+++ ..+.|--.+|-.
T Consensus 265 ~~~~~-~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~Gs~~G~~~p~~diP---------~lv~~y~~Gkl~ 333 (366)
T COG1062 265 VEVMR-QALEATHRGGTSVIIGVAGAGQEISTRPFQLVTG-RVWKGSAFGGARPRSDIP---------RLVDLYMAGKLP 333 (366)
T ss_pred HHHHH-HHHHHHhcCCeEEEEecCCCCceeecChHHeecc-ceEEEEeecCCccccchh---------HHHHHHHcCCCc
Confidence 99886 899999889999999987 3444333 34444 34554421 111233 556666689999
Q ss_pred HHHHHhhhcCC
Q psy16115 247 LYLEILQTCPL 257 (258)
Q Consensus 247 ~~~~~~~~~~~ 257 (258)
+.+.|||+.||
T Consensus 334 ~d~lvt~~~~L 344 (366)
T COG1062 334 LDRLVTHTIPL 344 (366)
T ss_pred hhHHhhccccH
Confidence 99999999997
No 93
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=98.95 E-value=1.2e-09 Score=99.66 Aligned_cols=140 Identities=19% Similarity=0.188 Sum_probs=99.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeC---ChhhHHHHHhCCCcccC-----HHH--HHHhCCeeeeccCcccc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEI---DPICALQACMDGFSVVK-----LNE--VIRTVDIVVTATGNKNV 177 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~---~~~~~~~a~~~g~~~~~-----l~e--~~~~aDvvi~~~~~~~~ 177 (258)
.|++|+|+|.|.||+.+++.++..|++|+++++ ++.+.+.+.+.|++..+ +.+ .....|+++.+++....
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~ 251 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPPL 251 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHHH
Confidence 789999999999999999999999999999987 57777778888876432 111 12347999999987777
Q ss_pred ccHHHHhcCCCCcEEEecCCC-C-hhh--c----hhhhcCCCceeeeeccCc-ceeecCCCccCCCceeEEecCCC----
Q psy16115 178 VTREHMDKMKNGCVVCNMGHS-N-TEI--D----VNSLRTPDLTWEKVRSQV-DHVIWPDVNLKNNTVIDLFRKPK---- 244 (258)
Q Consensus 178 i~~~~l~~~k~g~~ivnvg~~-~-~~~--~----~~~l~~~~i~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~---- 244 (258)
+. +.++.+++++.++.+|.. + ... . ...+..+++++.++.... ++|.. .+.++...+
T Consensus 252 ~~-~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~---------~~~~l~~~~~~~~ 321 (355)
T cd08230 252 AF-EALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNANKRHFEQ---------AVEDLAQWKYRWP 321 (355)
T ss_pred HH-HHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEecCCchhhHHH---------HHHHHHhcccccc
Confidence 75 789999999999999875 2 222 1 234555677777764332 33442 333333333
Q ss_pred hhHHHHHhhhcCC
Q psy16115 245 SRLYLEILQTCPL 257 (258)
Q Consensus 245 ~~~~~~~~~~~~~ 257 (258)
..+...|+|++||
T Consensus 322 ~~~~~~i~~~~~l 334 (355)
T cd08230 322 GVLERLITRRVPL 334 (355)
T ss_pred cchHHheeeeecH
Confidence 3466788888886
No 94
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.95 E-value=4e-09 Score=100.44 Aligned_cols=92 Identities=23% Similarity=0.398 Sum_probs=77.2
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccC----------------------------H
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK----------------------------L 158 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~----------------------------l 158 (258)
..+.+|+|+|+|.+|+..++.++.+|++|+++|+++.+++.+..+|.+... +
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 467999999999999999999999999999999999998888777765411 2
Q ss_pred HHHHHhCCeeeecc---C--ccccccHHHHhcCCCCcEEEecCCC
Q psy16115 159 NEVIRTVDIVVTAT---G--NKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 159 ~e~~~~aDvvi~~~---~--~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.+.++++|++|.+. | .+.++.++.++.||+|+++||++..
T Consensus 242 ~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred HHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeC
Confidence 33456799999986 4 4457888999999999999999865
No 95
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=98.94 E-value=7.9e-10 Score=100.76 Aligned_cols=139 Identities=20% Similarity=0.224 Sum_probs=94.2
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cC--------HHHHHH------hCC----ee
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VK--------LNEVIR------TVD----IV 168 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~--------l~e~~~------~aD----vv 168 (258)
.|++|+|.|.|.||..+++.++..|++|+++++++++...+++.|++. .+ +.+.++ +.| ++
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v 245 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKI 245 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEE
Confidence 689999999999999999999999999999999999988888888642 11 122222 234 89
Q ss_pred eeccCccccccHHHHhcCCCCcEEEecCCCC--hhhchhhhcCCCceeeeeccC-cceeecCCCccCCCceeEEecCCCh
Q psy16115 169 VTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEKVRSQ-VDHVIWPDVNLKNNTVIDLFRKPKS 245 (258)
Q Consensus 169 i~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~--~~~~~~~l~~~~i~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~ 245 (258)
++|++....++ ..++.++++++++.+|... .......+..+++++.+.... .+.|. .++.++.+++.
T Consensus 246 ~d~~g~~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------~~~~~i~~g~i 315 (349)
T TIGR03201 246 FECSGSKPGQE-SALSLLSHGGTLVVVGYTMAKTEYRLSNLMAFHARALGNWGCPPDRYP---------AALDLVLDGKI 315 (349)
T ss_pred EECCCChHHHH-HHHHHHhcCCeEEEECcCCCCcccCHHHHhhcccEEEEEecCCHHHHH---------HHHHHHHcCCC
Confidence 99998877775 6789999999999999762 233333343445566554322 23344 34444444444
Q ss_pred hHHHHHhhhcCC
Q psy16115 246 RLYLEILQTCPL 257 (258)
Q Consensus 246 ~~~~~~~~~~~~ 257 (258)
.+..+|+ ++||
T Consensus 316 ~~~~~i~-~~~l 326 (349)
T TIGR03201 316 QLGPFVE-RRPL 326 (349)
T ss_pred CcccceE-EecH
Confidence 4444443 4554
No 96
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.94 E-value=6.5e-09 Score=94.13 Aligned_cols=132 Identities=20% Similarity=0.233 Sum_probs=89.1
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh-HHHHHhCCCcccCHHHHHHhCCeeeeccC---ccccccHHH
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQACMDGFSVVKLNEVIRTVDIVVTATG---NKNVVTREH 182 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~-~~~a~~~g~~~~~l~e~~~~aDvvi~~~~---~~~~i~~~~ 182 (258)
++|++|+|||+|.||.++|+.|+.+|++|+++++.+.+ ...+.+.|+...+..++++++|+|+++.. ...+++++.
T Consensus 15 L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~~~V~~~~I 94 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQAEVYEEEI 94 (330)
T ss_pred hCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999888776443 34455678877789999999999999852 334554466
Q ss_pred HhcCCCCcEEEecCCC-ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEe
Q psy16115 183 MDKMKNGCVVCNMGHS-NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLF 240 (258)
Q Consensus 183 l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 240 (258)
+..+++|.+++. +.| +....... ....+++.-..|....-.....+.....+..|+
T Consensus 95 ~~~Lk~g~iL~~-a~G~~i~~~~~~-p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~ 151 (330)
T PRK05479 95 EPNLKEGAALAF-AHGFNIHFGQIV-PPADVDVIMVAPKGPGHLVRREYEEGGGVPCLI 151 (330)
T ss_pred HhcCCCCCEEEE-CCCCChhhceec-cCCCCcEEEeCCCCCchhhhhhhhcCCCceEEE
Confidence 778999988843 444 33322111 123345555545443333333344445555566
No 97
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=98.94 E-value=1.8e-09 Score=99.79 Aligned_cols=117 Identities=12% Similarity=0.114 Sum_probs=85.7
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh-HHHHHhCCCccc----CH---HHHHHhCCeeeeccCcccccc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQACMDGFSVV----KL---NEVIRTVDIVVTATGNKNVVT 179 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~-~~~a~~~g~~~~----~l---~e~~~~aDvvi~~~~~~~~i~ 179 (258)
.|++|+|.|.|.+|+.+++.++.+|++|++++.++++ .+.+++.|++.. +. .+.....|+++.+++....+.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~~~ 257 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHALL 257 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHHHH
Confidence 6899999999999999999999999999988877544 455566777422 11 122234799999998776665
Q ss_pred HHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeeeccCc-ceee
Q psy16115 180 REHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVRSQV-DHVI 225 (258)
Q Consensus 180 ~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~~~-~~~~ 225 (258)
+.++.+++++.++.+|.. +.+.....+..+++++.++.... ..|.
T Consensus 258 -~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~ 305 (375)
T PLN02178 258 -PLFSLLKVSGKLVALGLPEKPLDLPIFPLVLGRKMVGGSQIGGMKETQ 305 (375)
T ss_pred -HHHHhhcCCCEEEEEccCCCCCccCHHHHHhCCeEEEEeCccCHHHHH
Confidence 788999999999999875 33344455556777777765433 3355
No 98
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.93 E-value=3.9e-09 Score=83.90 Aligned_cols=104 Identities=24% Similarity=0.350 Sum_probs=76.7
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHH-hC---CCc---ccCHHHHHHhCCeeeeccCcc-c
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQAC-MD---GFS---VVKLNEVIRTVDIVVTATGNK-N 176 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~-~~---g~~---~~~l~e~~~~aDvvi~~~~~~-~ 176 (258)
+++|++++|+|+|.+|+.++..|...|++ |++++|+.++.+... .. .+. ..++.+.+.++|+||.|++.. .
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 47999999999999999999999999995 999999998865432 22 222 234566788999999997555 3
Q ss_pred cccHHHHhcCCCC-cEEEecCCC-ChhhchhhhcC
Q psy16115 177 VVTREHMDKMKNG-CVVCNMGHS-NTEIDVNSLRT 209 (258)
Q Consensus 177 ~i~~~~l~~~k~g-~~ivnvg~~-~~~~~~~~l~~ 209 (258)
.+.++.++..++. .+++|++.+ +.+..+..+.+
T Consensus 89 ~i~~~~~~~~~~~~~~v~Dla~Pr~i~~~v~~~~~ 123 (135)
T PF01488_consen 89 IITEEMLKKASKKLRLVIDLAVPRDIDPEVAELPG 123 (135)
T ss_dssp SSTHHHHTTTCHHCSEEEES-SS-SB-TTCGGSTT
T ss_pred ccCHHHHHHHHhhhhceeccccCCCCChhhcccCC
Confidence 7777777665543 499999988 76666665543
No 99
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.93 E-value=1.5e-09 Score=97.57 Aligned_cols=83 Identities=37% Similarity=0.504 Sum_probs=77.4
Q ss_pred heeeeccccccccccCCCcchh------hHHHHHHHHHhCCCCCCCCceEECChhhhHHHHhcccCccccccccCCHHHH
Q psy16115 8 QWTLGFKRRVSPVCIRSNPLII------PQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQA 81 (258)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~~~~~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~ 81 (258)
-|++|++||+|++++++||.++ +|+|++.+++.. ..++..+|+++|.++|+++|.+.+..++.-++.+++.+.
T Consensus 332 i~llaeGRLvNLa~a~GHPs~VMd~SFanQaLa~~~L~~n-~~~~~~~Vy~lP~~lD~~VArl~L~~~G~~i~~Lt~eQ~ 410 (420)
T COG0499 332 IILLAEGRLVNLAAATGHPSEVMDMSFANQALAQIYLVKN-HGKLEPGVYRLPKELDEEVARLKLEAMGIELDELTEEQA 410 (420)
T ss_pred EEEEecceeeeeccCCCCcHHHhhhhHHHHHHHHHHHHhc-ccccCCceeeCcHHHHHHHHHHHHHHhCceeeecCHHHH
Confidence 4899999999999999999985 999999999988 478999999999999999999999999999999999999
Q ss_pred HhhhcccCCC
Q psy16115 82 KYMGLNKAGP 91 (258)
Q Consensus 82 ~~~~~~~~g~ 91 (258)
+|+..|..|+
T Consensus 411 ~Yl~~w~~Gt 420 (420)
T COG0499 411 EYLGSWEEGT 420 (420)
T ss_pred HHhCCCCCCC
Confidence 9998887764
No 100
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=98.92 E-value=1.2e-09 Score=99.30 Aligned_cols=145 Identities=16% Similarity=0.147 Sum_probs=102.1
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCccc------CHHHHHH-----hCC-eeeeccCc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV------KLNEVIR-----TVD-IVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~-----~aD-vvi~~~~~ 174 (258)
.|++|+|.|.|.+|+.+++.++..|++ |+++++++++.+.+++.|++.. +.+++.+ ..| +++.|+|.
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G~ 239 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAGV 239 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCCC
Confidence 689999999999999999999999997 7889999888877777776421 1222221 356 99999998
Q ss_pred cccccHHHHhcCCCCcEEEecCCC--Chhh---chhhhcCCCceeeeeccCc-ceeecCCCccCCCceeEEecCCChhHH
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS--NTEI---DVNSLRTPDLTWEKVRSQV-DHVIWPDVNLKNNTVIDLFRKPKSRLY 248 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~--~~~~---~~~~l~~~~i~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~~~~~ 248 (258)
...++ +.++.+++++.++.+|.. +... .+..+..+++++.++.... ..|. ...+ ...+.++.+++.++.
T Consensus 240 ~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~--~~~~--~~~~~~~~~g~i~~~ 314 (347)
T PRK10309 240 PQTVE-LAIEIAGPRAQLALVGTLHHDLHLTSATFGKILRKELTVIGSWMNYSSPWP--GQEW--ETASRLLTERKLSLE 314 (347)
T ss_pred HHHHH-HHHHHhhcCCEEEEEccCCCCcccChhhhhHHhhcCcEEEEEeccccCCcc--hhHH--HHHHHHHHcCCCCch
Confidence 77776 789999999999999865 2111 1223455677777653321 1110 0111 146667777887788
Q ss_pred HHHhhhcCC
Q psy16115 249 LEILQTCPL 257 (258)
Q Consensus 249 ~~~~~~~~~ 257 (258)
+.|+|++||
T Consensus 315 ~~i~~~~~l 323 (347)
T PRK10309 315 PLIAHRGSF 323 (347)
T ss_pred hheEEEeeH
Confidence 899999886
No 101
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.88 E-value=1.2e-08 Score=86.49 Aligned_cols=108 Identities=18% Similarity=0.268 Sum_probs=80.2
Q ss_pred CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-CCcccCHHHHHH-hCCeeeeccCccccccHH
Q psy16115 104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-GFSVVKLNEVIR-TVDIVVTATGNKNVVTRE 181 (258)
Q Consensus 104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-g~~~~~l~e~~~-~aDvvi~~~~~~~~i~~~ 181 (258)
+.+++|++++|+|+|.||+.+++.|..+|++|+++|+++.+.....+. +....+.++++. ++|+++.|+. .+.++.+
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~-~~~I~~~ 101 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCAL-GGVINDD 101 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEeccc-ccccCHH
Confidence 345799999999999999999999999999999999998876554433 666556666665 7999997763 4688889
Q ss_pred HHhcCCCCcEEEecCCCCh--hhchhhhcCCCce
Q psy16115 182 HMDKMKNGCVVCNMGHSNT--EIDVNSLRTPDLT 213 (258)
Q Consensus 182 ~l~~~k~g~~ivnvg~~~~--~~~~~~l~~~~i~ 213 (258)
.++.++.. +++.-+.+.. +.--+.|+.+.+.
T Consensus 102 ~~~~l~~~-~v~~~AN~~~~~~~~~~~L~~~Gi~ 134 (200)
T cd01075 102 TIPQLKAK-AIAGAANNQLADPRHGQMLHERGIL 134 (200)
T ss_pred HHHHcCCC-EEEECCcCccCCHhHHHHHHHCCCE
Confidence 99999754 5666555522 2333455555553
No 102
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=98.88 E-value=1.1e-08 Score=91.30 Aligned_cols=104 Identities=17% Similarity=0.250 Sum_probs=78.4
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCccc----cc-c-HHHH
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKN----VV-T-REHM 183 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~----~i-~-~~~l 183 (258)
+|+|||+|.||..+++.+...|.+|++||+++.+...+.+.|.. ..+..+.++++|+|++|..... ++ . ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 48999999999999999999999999999999887766666664 4578889999999999964432 22 1 1245
Q ss_pred hcCCCCcEEEecCCCCh---hhchhhhcCCCcee
Q psy16115 184 DKMKNGCVVCNMGHSNT---EIDVNSLRTPDLTW 214 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~~---~~~~~~l~~~~i~~ 214 (258)
..++++.+++|+++... ..+.+.++.+.+..
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~ 114 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDY 114 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCE
Confidence 67899999999988732 23445565544443
No 103
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=98.86 E-value=2.2e-09 Score=98.46 Aligned_cols=110 Identities=14% Similarity=0.142 Sum_probs=80.1
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHH-HHHhCCCccc----C---HHHHHHhCCeeeeccCcccccc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL-QACMDGFSVV----K---LNEVIRTVDIVVTATGNKNVVT 179 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~-~a~~~g~~~~----~---l~e~~~~aDvvi~~~~~~~~i~ 179 (258)
.|++|+|.|.|.+|+.+++.++.+|++|++++.++.+.. .+.+.|++.. + +.+.....|+++.+++....+.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~~~~ 262 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVHALG 262 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHHHHH
Confidence 789999999999999999999999999888877765543 3456776421 1 1222235799999998766675
Q ss_pred HHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeeec
Q psy16115 180 REHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVR 218 (258)
Q Consensus 180 ~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~ 218 (258)
+.++.+++++.++.+|.. +.+.....+..+++.+.++.
T Consensus 263 -~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~ 302 (360)
T PLN02586 263 -PLLGLLKVNGKLITLGLPEKPLELPIFPLVLGRKLVGGSD 302 (360)
T ss_pred -HHHHHhcCCcEEEEeCCCCCCCccCHHHHHhCCeEEEEcC
Confidence 789999999999999865 32334444445566666554
No 104
>KOG1370|consensus
Probab=98.85 E-value=3.6e-09 Score=93.23 Aligned_cols=88 Identities=55% Similarity=0.854 Sum_probs=80.9
Q ss_pred eeeeccccccccccCCCcch------hhHHHHHHHHHhCCCCCCCCceEECChhhhHHHHhcccCccccccccCCHHHHH
Q psy16115 9 WTLGFKRRVSPVCIRSNPLI------IPQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAK 82 (258)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~~~~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~ 82 (258)
-++|++||+|++|..++|.= .+|+++++++|++|.++|..+|+-+|..+|++||++-++.+.+.+..+++.+.+
T Consensus 338 IlLAeGRLvNL~CatghpSFvmS~sftnQvlAqIeLwt~p~~kY~~~V~~LPKklDE~VA~lHL~kl~~kLTkLt~~Qa~ 417 (434)
T KOG1370|consen 338 ILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTAPEGKYKVGVYVLPKKLDEYVASLHLGKLGAKLTKLTDKQAK 417 (434)
T ss_pred EEEecCceeecccccCCCceEEecchHHHHHHHHHHhcCCCCccccceEecchhhHHHHHHhhhhhhchhhhhhhHHHHH
Confidence 47999999999999999985 499999999999986799999999999999999999999899999999999999
Q ss_pred hhhcccCCCCCcch
Q psy16115 83 YMGLNKAGPFKPSY 96 (258)
Q Consensus 83 ~~~~~~~g~~~~~~ 96 (258)
|++..+.||+.+-.
T Consensus 418 YlG~~~~gPfKpdh 431 (434)
T KOG1370|consen 418 YLGLSKDGPFKPDH 431 (434)
T ss_pred hcCCCcCCCCCCCC
Confidence 99999999987643
No 105
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.85 E-value=2.2e-08 Score=80.03 Aligned_cols=81 Identities=25% Similarity=0.379 Sum_probs=70.4
Q ss_pred cCcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHH
Q psy16115 103 TDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTRE 181 (258)
Q Consensus 103 ~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~ 181 (258)
++.++.|++|.|+|.+. +|+.++.+|...|++|+.++.+. .++++.+++||+|+.+++.++.++.+
T Consensus 22 ~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t-------------~~l~~~v~~ADIVvsAtg~~~~i~~~ 88 (140)
T cd05212 22 EGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT-------------IQLQSKVHDADVVVVGSPKPEKVPTE 88 (140)
T ss_pred cCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC-------------cCHHHHHhhCCEEEEecCCCCccCHH
Confidence 45678999999999998 99999999999999999997533 25678899999999999999999855
Q ss_pred HHhcCCCCcEEEecCCCC
Q psy16115 182 HMDKMKNGCVVCNMGHSN 199 (258)
Q Consensus 182 ~l~~~k~g~~ivnvg~~~ 199 (258)
++|+|++++|+|...
T Consensus 89 ---~ikpGa~Vidvg~~~ 103 (140)
T cd05212 89 ---WIKPGATVINCSPTK 103 (140)
T ss_pred ---HcCCCCEEEEcCCCc
Confidence 479999999999763
No 106
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.85 E-value=3.7e-08 Score=88.40 Aligned_cols=103 Identities=16% Similarity=0.227 Sum_probs=78.0
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHh---CCeeeeccCcc----ccccHHH
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRT---VDIVVTATGNK----NVVTREH 182 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~---aDvvi~~~~~~----~~i~~~~ 182 (258)
+|+|||+|.||..+++.+...|.+|++||+++.+.+.+.+.|... .++++++++ +|+|++|..+. .+++ ..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-DL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-HH
Confidence 699999999999999999999999999999998877666677654 478888876 58999986544 3343 55
Q ss_pred HhcCCCCcEEEecCCC---ChhhchhhhcCCCcee
Q psy16115 183 MDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTW 214 (258)
Q Consensus 183 l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~ 214 (258)
+..+++|.++||++.. ......+.+..+.+..
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~ 115 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHY 115 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeE
Confidence 6678899999999887 2233344555444443
No 107
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=98.82 E-value=2.6e-08 Score=89.29 Aligned_cols=106 Identities=12% Similarity=0.235 Sum_probs=80.2
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCccc----ccc--HHH
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKN----VVT--REH 182 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~----~i~--~~~ 182 (258)
++|+|||+|.||..+++.+...|.+|++||+++.+.....+.|.. ..++.++++++|+|++|..... ++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 379999999999999999999999999999999887776666764 4578888999999999964443 221 123
Q ss_pred HhcCCCCcEEEecCCCCh---hhchhhhcCCCceee
Q psy16115 183 MDKMKNGCVVCNMGHSNT---EIDVNSLRTPDLTWE 215 (258)
Q Consensus 183 l~~~k~g~~ivnvg~~~~---~~~~~~l~~~~i~~~ 215 (258)
+..++++.++||++..+. ....+.+..+.+...
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l 117 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM 117 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence 556789999999999832 333455655555533
No 108
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=98.82 E-value=1.2e-08 Score=95.02 Aligned_cols=149 Identities=19% Similarity=0.208 Sum_probs=100.7
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCccc------CHHHHHH------hCCeeeeccCc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV------KLNEVIR------TVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~------~aDvvi~~~~~ 174 (258)
.|++|+|.|.|.||+.+++.++.+|++ |++.|+++.+++.+++.|++.. ++.+.+. ..|+++.++|.
T Consensus 185 ~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G~ 264 (393)
T TIGR02819 185 PGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCVGF 264 (393)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEECCCC
Confidence 789999999999999999999999997 5556888888888888887422 2222221 37999999987
Q ss_pred cc--------------cccHHHHhcCCCCcEEEecCCCC---hhhchhhhcCCCceeeeeccCcceeecCCCccC----C
Q psy16115 175 KN--------------VVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLK----N 233 (258)
Q Consensus 175 ~~--------------~i~~~~l~~~k~g~~ivnvg~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~----~ 233 (258)
+. .++ +.++.+++++.++.+|... .......+..+++++.....+..+..+.-..-. .
T Consensus 265 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~~~~~~~~ 343 (393)
T TIGR02819 265 EARGHGHDGKKEAPATVLN-SLMEVTRVGGAIGIPGLYVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTGQTPVMKYN 343 (393)
T ss_pred ccccccccccccchHHHHH-HHHHHhhCCCEEEEeeecCCcccccccccccccccccchHHhhccCceEEeccCChhhhH
Confidence 63 565 8899999999999999862 111112344455544432221111000000000 0
Q ss_pred CceeEEecCCChhHHHHHh-hhcCC
Q psy16115 234 NTVIDLFRKPKSRLYLEIL-QTCPL 257 (258)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~-~~~~~ 257 (258)
..++.++.+++.++.+.|+ |+|||
T Consensus 344 ~~~~~~~~~g~i~~~~~i~~~~~~l 368 (393)
T TIGR02819 344 RNLMQAILHDRVQIAKAVNVTVISL 368 (393)
T ss_pred HHHHHHHHcCCCCHHHceecceecH
Confidence 1467888899999988888 78987
No 109
>KOG0022|consensus
Probab=98.81 E-value=7.2e-09 Score=91.82 Aligned_cols=139 Identities=24% Similarity=0.208 Sum_probs=96.5
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCc-ccC-------HHHHHH-----hCCeeeeccC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-------LNEVIR-----TVDIVVTATG 173 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~-~~~-------l~e~~~-----~aDvvi~~~~ 173 (258)
+|++++|+|+|.+|+++++-+|.+|+ +|+.+|.++.+.+.+++.|++ ..+ ..|.+. +.|+-++|.|
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G 271 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIG 271 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEecC
Confidence 89999999999999999999999998 699999999999999999985 233 233332 4799999999
Q ss_pred ccccccHHHHhcCCCC-cEEEecCCC--Chhh--chhhhcCCCcee---eee-ccCcceeecCCCccCCCceeEEecCCC
Q psy16115 174 NKNVVTREHMDKMKNG-CVVCNMGHS--NTEI--DVNSLRTPDLTW---EKV-RSQVDHVIWPDVNLKNNTVIDLFRKPK 244 (258)
Q Consensus 174 ~~~~i~~~~l~~~k~g-~~ivnvg~~--~~~~--~~~~l~~~~i~~---~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~ 244 (258)
+...+. ++|...++| +.-|-+|.. ..+. ....|..|+.-. .+- .+..+--.+..+.+ +.+
T Consensus 272 ~~~~m~-~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs~FGG~K~~~~iP~lV~~y~----------~~~ 340 (375)
T KOG0022|consen 272 NVSTMR-AALESCHKGWGKSVVIGVAAAGQEISTRPFQLVTGRTWKGSAFGGFKSKSDIPKLVKDYM----------KKK 340 (375)
T ss_pred CHHHHH-HHHHHhhcCCCeEEEEEecCCCcccccchhhhccccEEEEEecccccchhhhhHHHHHHH----------hCc
Confidence 999996 888888888 555566655 3332 233444454421 111 11111111112222 466
Q ss_pred hhHHHHHhhhcCC
Q psy16115 245 SRLYLEILQTCPL 257 (258)
Q Consensus 245 ~~~~~~~~~~~~~ 257 (258)
-.++..|||+.||
T Consensus 341 l~ld~~ITh~l~f 353 (375)
T KOG0022|consen 341 LNLDEFITHELPF 353 (375)
T ss_pred cchhhhhhcccCH
Confidence 6778888988886
No 110
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=98.81 E-value=3.1e-08 Score=88.51 Aligned_cols=90 Identities=21% Similarity=0.301 Sum_probs=72.4
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCccc----ccc--HHH
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKN----VVT--REH 182 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~----~i~--~~~ 182 (258)
.+|+|||+|.||..+++.+...|.+|++||+++.+.+...+.|... .+++++++++|+|++|..... ++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 4799999999999999999999999999999998876666667654 468888999999999964332 221 124
Q ss_pred HhcCCCCcEEEecCCCC
Q psy16115 183 MDKMKNGCVVCNMGHSN 199 (258)
Q Consensus 183 l~~~k~g~~ivnvg~~~ 199 (258)
++.++++.+++|++...
T Consensus 83 ~~~~~~g~iiid~st~~ 99 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIA 99 (296)
T ss_pred hhcCCCCcEEEECCCCC
Confidence 56789999999999883
No 111
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=98.81 E-value=1.1e-08 Score=93.85 Aligned_cols=139 Identities=25% Similarity=0.252 Sum_probs=96.7
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc-C-------HHHHHH-----hCCeeeeccC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV-K-------LNEVIR-----TVDIVVTATG 173 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~-~-------l~e~~~-----~aDvvi~~~~ 173 (258)
.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+.+.|++.. + +.+.+. ..|+++.+++
T Consensus 184 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~g 263 (365)
T cd08277 184 PGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECTG 263 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECCC
Confidence 78999999999999999999999999 69999999988877777776421 1 122222 4799999998
Q ss_pred ccccccHHHHhcCCCC-cEEEecCCCC---hhhchhhhcCCCceeeeeccCc----ceeecCCCccCCCceeEEecCCCh
Q psy16115 174 NKNVVTREHMDKMKNG-CVVCNMGHSN---TEIDVNSLRTPDLTWEKVRSQV----DHVIWPDVNLKNNTVIDLFRKPKS 245 (258)
Q Consensus 174 ~~~~i~~~~l~~~k~g-~~ivnvg~~~---~~~~~~~l~~~~i~~~~~~~~~----~~~~~~~~~l~~~~~~~l~~~~~~ 245 (258)
....+. +.++.++++ +.++.+|..+ .+.....+.. ++++.++.... ..+. ..+.++.+.+.
T Consensus 264 ~~~~~~-~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~i~g~~~~~~~~~~~~~---------~~~~~~~~~~~ 332 (365)
T cd08277 264 NADLMN-EALESTKLGWGVSVVVGVPPGAELSIRPFQLIL-GRTWKGSFFGGFKSRSDVP---------KLVSKYMNKKF 332 (365)
T ss_pred ChHHHH-HHHHhcccCCCEEEEEcCCCccccccCHhHHhh-CCEEEeeecCCCChHHHHH---------HHHHHHHCCCc
Confidence 766665 788889875 9999988752 2222222222 44554432211 1122 45556666677
Q ss_pred hHHHHHhhhcCC
Q psy16115 246 RLYLEILQTCPL 257 (258)
Q Consensus 246 ~~~~~~~~~~~~ 257 (258)
.+...|+|++||
T Consensus 333 ~~~~~i~~~~~l 344 (365)
T cd08277 333 DLDELITHVLPF 344 (365)
T ss_pred ChhHheeeEEch
Confidence 788889999887
No 112
>PLN02712 arogenate dehydrogenase
Probab=98.77 E-value=4.3e-08 Score=96.81 Aligned_cols=117 Identities=9% Similarity=0.099 Sum_probs=81.6
Q ss_pred CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHH-hCCeeeeccC---ccccc
Q psy16115 104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIR-TVDIVVTATG---NKNVV 178 (258)
Q Consensus 104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~-~aDvvi~~~~---~~~~i 178 (258)
+.++.+++|+|||+|.||..+|+.++.+|.+|+++|++... ..+.+.|+.. .++++++. .+|+|++|+. +..++
T Consensus 364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~vi 442 (667)
T PLN02712 364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKVL 442 (667)
T ss_pred cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHHH
Confidence 44568899999999999999999999999999999998653 3455667643 46777776 5899999953 34445
Q ss_pred cHHHHhcCCCCcEEEecCCCCh--hhchhhhcCCCceeeeeccCc
Q psy16115 179 TREHMDKMKNGCVVCNMGHSNT--EIDVNSLRTPDLTWEKVRSQV 221 (258)
Q Consensus 179 ~~~~l~~~k~g~~ivnvg~~~~--~~~~~~l~~~~i~~~~~~~~~ 221 (258)
..-....+|+|++++|++.... -..+..+......+.+.+|..
T Consensus 443 ~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~ 487 (667)
T PLN02712 443 KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMF 487 (667)
T ss_pred HHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCC
Confidence 4222235899999999998732 122222322334555555544
No 113
>KOG0023|consensus
Probab=98.75 E-value=3.7e-08 Score=87.64 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=100.9
Q ss_pred CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115 47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ 126 (258)
Q Consensus 47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~ 126 (258)
...+.++|+.++.+.|+=.+ ..+++ .+..++..+.. +|+.++|+|+|-+|....+
T Consensus 145 ~~~a~kIP~~~pl~~aAPlL------CaGIT------------------vYspLk~~g~~-pG~~vgI~GlGGLGh~aVq 199 (360)
T KOG0023|consen 145 EVFAIKIPENLPLASAAPLL------CAGIT------------------VYSPLKRSGLG-PGKWVGIVGLGGLGHMAVQ 199 (360)
T ss_pred eeeEEECCCCCChhhccchh------hcceE------------------EeehhHHcCCC-CCcEEEEecCcccchHHHH
Confidence 45677999999887775321 11111 11111111223 8999999999999999999
Q ss_pred HHHhCCCEEEEEeCChhhHHHHHh-CCCcc-c----C---HHHHHHhCCeeeeccC--ccccccHHHHhcCCCCcEEEec
Q psy16115 127 SLKGLGCVIYITEIDPICALQACM-DGFSV-V----K---LNEVIRTVDIVVTATG--NKNVVTREHMDKMKNGCVVCNM 195 (258)
Q Consensus 127 ~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~~-~----~---l~e~~~~aDvvi~~~~--~~~~i~~~~l~~~k~g~~ivnv 195 (258)
.+|++|++|+++|++..+.+++.+ +|++. . + .+++...-|.++.+.. +.+.++ ..++.||+++.+|-+
T Consensus 200 ~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~a~~~~~-~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 200 YAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNLAEHALE-PLLGLLKVNGTLVLV 278 (360)
T ss_pred HHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeeccccchH-HHHHHhhcCCEEEEE
Confidence 999999999999999866666655 78752 1 2 2233344577777765 777786 889999999999999
Q ss_pred CCC--ChhhchhhhcCCCceeeee
Q psy16115 196 GHS--NTEIDVNSLRTPDLTWEKV 217 (258)
Q Consensus 196 g~~--~~~~~~~~l~~~~i~~~~~ 217 (258)
|.+ ..+.+...|--+.+.+.++
T Consensus 279 g~p~~~~~~~~~~lil~~~~I~GS 302 (360)
T KOG0023|consen 279 GLPEKPLKLDTFPLILGRKSIKGS 302 (360)
T ss_pred eCcCCcccccchhhhcccEEEEee
Confidence 998 3444455566667766654
No 114
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=98.75 E-value=2e-08 Score=92.19 Aligned_cols=139 Identities=22% Similarity=0.267 Sum_probs=98.2
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-cC-------HHHHHH-----hCCeeeeccC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-VK-------LNEVIR-----TVDIVVTATG 173 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~~-------l~e~~~-----~aDvvi~~~~ 173 (258)
+|++|+|+|.|.+|+.+++.++.+|+ +|+++++++++.+.+++.|++. .+ +.+.++ ..|+++.+++
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G 266 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECTG 266 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 79999999999999999999999999 7999999999888888888642 11 222222 3799999988
Q ss_pred ccccccHHHHhcCCCC-cEEEecCCCC--hhhchh--hhcCCCceeeeeccCc----ceeecCCCccCCCceeEEecCCC
Q psy16115 174 NKNVVTREHMDKMKNG-CVVCNMGHSN--TEIDVN--SLRTPDLTWEKVRSQV----DHVIWPDVNLKNNTVIDLFRKPK 244 (258)
Q Consensus 174 ~~~~i~~~~l~~~k~g-~~ivnvg~~~--~~~~~~--~l~~~~i~~~~~~~~~----~~~~~~~~~l~~~~~~~l~~~~~ 244 (258)
....+. +.++.++++ ++++.+|..+ ....+. .+. +++++.++.... ..+. .++.++.+++
T Consensus 267 ~~~~~~-~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~-~~~~i~g~~~~~~~~~~~~~---------~~~~~~~~g~ 335 (369)
T cd08301 267 NIDAMI-SAFECVHDGWGVTVLLGVPHKDAVFSTHPMNLL-NGRTLKGTLFGGYKPKTDLP---------NLVEKYMKKE 335 (369)
T ss_pred ChHHHH-HHHHHhhcCCCEEEEECcCCCCcccccCHHHHh-cCCeEEEEecCCCChHHHHH---------HHHHHHHcCC
Confidence 776665 678889996 9999998762 222222 222 246666542211 1122 3556666777
Q ss_pred hhHHHHHhhhcCC
Q psy16115 245 SRLYLEILQTCPL 257 (258)
Q Consensus 245 ~~~~~~~~~~~~~ 257 (258)
.++...|+|++||
T Consensus 336 ~~~~~~i~~~~~l 348 (369)
T cd08301 336 LELEKFITHELPF 348 (369)
T ss_pred CCcHHheeeeecH
Confidence 7777888898886
No 115
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=98.75 E-value=1.9e-08 Score=92.32 Aligned_cols=139 Identities=25% Similarity=0.298 Sum_probs=95.2
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-cC-------HHHHHH-----hCCeeeeccC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-VK-------LNEVIR-----TVDIVVTATG 173 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~~-------l~e~~~-----~aDvvi~~~~ 173 (258)
.|++|+|.|.|.||+.+++.++.+|+ +|+++++++++...+.+.|++. .+ +.+.+. ..|+++.+++
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g 265 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIG 265 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCC
Confidence 79999999999999999999999999 6999999999888888888642 11 222222 4799999998
Q ss_pred ccccccHHHHhcCCCC-cEEEecCCC--Chhhc--hhhhcCCCceeeeecc----CcceeecCCCccCCCceeEEecCCC
Q psy16115 174 NKNVVTREHMDKMKNG-CVVCNMGHS--NTEID--VNSLRTPDLTWEKVRS----QVDHVIWPDVNLKNNTVIDLFRKPK 244 (258)
Q Consensus 174 ~~~~i~~~~l~~~k~g-~~ivnvg~~--~~~~~--~~~l~~~~i~~~~~~~----~~~~~~~~~~~l~~~~~~~l~~~~~ 244 (258)
....++ +.++.++++ ++++.+|.. ..+.. ...+..+ ..+.+... ..+.+. .++.++..++
T Consensus 266 ~~~~~~-~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~---------~~~~~~~~g~ 334 (368)
T cd08300 266 NVKVMR-AALEACHKGWGTSVIIGVAAAGQEISTRPFQLVTG-RVWKGTAFGGWKSRSQVP---------KLVEDYMKGK 334 (368)
T ss_pred ChHHHH-HHHHhhccCCCeEEEEccCCCCCccccCHHHHhhc-CeEEEEEecccCcHHHHH---------HHHHHHHcCC
Confidence 776675 788889886 899988864 22221 1112211 22222211 111222 4556667777
Q ss_pred hhHHHHHhhhcCC
Q psy16115 245 SRLYLEILQTCPL 257 (258)
Q Consensus 245 ~~~~~~~~~~~~~ 257 (258)
......|+|++||
T Consensus 335 l~~~~~i~~~~~l 347 (368)
T cd08300 335 IKVDEFITHTMPL 347 (368)
T ss_pred CChhhceeeeEcH
Confidence 7777788898886
No 116
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=98.73 E-value=1.9e-08 Score=91.44 Aligned_cols=140 Identities=20% Similarity=0.207 Sum_probs=98.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc------CHHHHH----H--hCCeeeeccCc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV------KLNEVI----R--TVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~----~--~aDvvi~~~~~ 174 (258)
+|++|+|.|.|.+|..+++.++..|+ +|++++.++.+...+.+.|++.. ++.+.+ . ..|+++.+.+.
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~ 251 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGV 251 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCC
Confidence 78999999999999999999999999 79999888888776666676421 222222 2 38999999876
Q ss_pred cccccHHHHhcCCCCcEEEecCCCC--hhhchhhhcCCCceeeeeccC-cceeecCCCccCCCceeEEecCCChhHHHHH
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEKVRSQ-VDHVIWPDVNLKNNTVIDLFRKPKSRLYLEI 251 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~~--~~~~~~~l~~~~i~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ 251 (258)
...+. +.++.+++++.++.+|... .......+..+.+++.+.... .+.+. .++.++.+++.++...|
T Consensus 252 ~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~---------~~~~~~~~g~l~~~~~i 321 (351)
T cd08233 252 QATLD-TAIDALRPRGTAVNVAIWEKPISFNPNDLVLKEKTLTGSICYTREDFE---------EVIDLLASGKIDAEPLI 321 (351)
T ss_pred HHHHH-HHHHhccCCCEEEEEccCCCCCccCHHHHHhhCcEEEEEeccCcchHH---------HHHHHHHcCCCChHHhe
Confidence 66664 7888999999999998752 222333344556676665332 23344 45666666666666667
Q ss_pred hhhcCC
Q psy16115 252 LQTCPL 257 (258)
Q Consensus 252 ~~~~~~ 257 (258)
.+++||
T Consensus 322 ~~~~~l 327 (351)
T cd08233 322 TSRIPL 327 (351)
T ss_pred EEEecH
Confidence 777765
No 117
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.72 E-value=5e-08 Score=91.50 Aligned_cols=100 Identities=24% Similarity=0.306 Sum_probs=75.7
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCC-CEEEEEeCChhhHH-HHHhCCCcc---cCHHHHHHhCCeeeeccCcc-cccc
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICAL-QACMDGFSV---VKLNEVIRTVDIVVTATGNK-NVVT 179 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~-~a~~~g~~~---~~l~e~~~~aDvvi~~~~~~-~~i~ 179 (258)
.+.|++|+|+|+|.||+.+++.|+..| .+|+++++++.+.. .+...+... .++.+.+.++|+||.|++.+ .+++
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~ii~ 256 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHPIVS 256 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCceEc
Confidence 368999999999999999999999999 57999999988754 344445432 34567778999999998655 4677
Q ss_pred HHHHhcCC----CCcEEEecCCC-Chhhchh
Q psy16115 180 REHMDKMK----NGCVVCNMGHS-NTEIDVN 205 (258)
Q Consensus 180 ~~~l~~~k----~g~~ivnvg~~-~~~~~~~ 205 (258)
++.++.+. ...+++|.+.+ |.+..+.
T Consensus 257 ~e~l~~~~~~~~~~~~viDla~Prdid~~v~ 287 (417)
T TIGR01035 257 KEDVERALRERTRPLFIIDIAVPRDVDPAVA 287 (417)
T ss_pred HHHHHHHHhcCCCCeEEEEeCCCCCCChhhc
Confidence 77776542 24589999987 5554443
No 118
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.72 E-value=1.2e-07 Score=78.04 Aligned_cols=91 Identities=30% Similarity=0.421 Sum_probs=68.9
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc---c------------------------cCHH
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---V------------------------VKLN 159 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~---~------------------------~~l~ 159 (258)
+...+|+|+|.|.+|+..++.++.+|++|+.+|.++.+.......+.. . ..+.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 97 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA 97 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence 467999999999999999999999999999999998876654444322 1 1256
Q ss_pred HHHHhCCeeeec-----cCccccccHHHHhcCCCCcEEEecCC
Q psy16115 160 EVIRTVDIVVTA-----TGNKNVVTREHMDKMKNGCVVCNMGH 197 (258)
Q Consensus 160 e~~~~aDvvi~~-----~~~~~~i~~~~l~~~k~g~~ivnvg~ 197 (258)
+.++.+|+++.+ ...+.++.++.++.||++.+|+|++-
T Consensus 98 ~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 98 EFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence 667789999975 35778999999999999999999974
No 119
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.72 E-value=7.3e-08 Score=86.51 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=79.7
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-CHHHHHHh---CCeeeeccCcc----ccccHHH
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRT---VDIVVTATGNK----NVVTREH 182 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~l~e~~~~---aDvvi~~~~~~----~~i~~~~ 182 (258)
+|+|||+|.||..+++.|...|.+|++||+++.+.....+.|+... +++++++. +|+|+++.... .+++ ..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~-~l 80 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID-EL 80 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH-HH
Confidence 6999999999999999999999999999999988777667777644 68888775 59999985443 2342 55
Q ss_pred HhcCCCCcEEEecCCCCh---hhchhhhcCCCceeee
Q psy16115 183 MDKMKNGCVVCNMGHSNT---EIDVNSLRTPDLTWEK 216 (258)
Q Consensus 183 l~~~k~g~~ivnvg~~~~---~~~~~~l~~~~i~~~~ 216 (258)
...++++.++||++.... ....+.+..+.+...+
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~d 117 (301)
T PRK09599 81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVD 117 (301)
T ss_pred HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEe
Confidence 677899999999988732 2234555555555443
No 120
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.71 E-value=1.1e-07 Score=85.77 Aligned_cols=102 Identities=26% Similarity=0.343 Sum_probs=75.4
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhH-HHHHhCCCcccC---HHHHHHhCCeeeeccCcccc--cc
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICA-LQACMDGFSVVK---LNEVIRTVDIVVTATGNKNV--VT 179 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~-~~a~~~g~~~~~---l~e~~~~aDvvi~~~~~~~~--i~ 179 (258)
+.|++|+|+|+|.||+.+++.++..|. +|+++|+++.+. ..+.+.|....+ +.+.+.++|+||.|++.+.. +.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~ 255 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHYAKIV 255 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCchHHHH
Confidence 589999999999999999999998875 699999998775 345556655433 45667789999999877765 11
Q ss_pred HHHHhcC-CCCcEEEecCCC-Chhhchhhhc
Q psy16115 180 REHMDKM-KNGCVVCNMGHS-NTEIDVNSLR 208 (258)
Q Consensus 180 ~~~l~~~-k~g~~ivnvg~~-~~~~~~~~l~ 208 (258)
++.++.. +++.+++|++.+ |.+..+..+.
T Consensus 256 ~~~~~~~~~~~~~viDlavPrdi~~~v~~l~ 286 (311)
T cd05213 256 ERAMKKRSGKPRLIVDLAVPRDIEPEVGELE 286 (311)
T ss_pred HHHHhhCCCCCeEEEEeCCCCCCchhhccCC
Confidence 2333333 357899999987 6655555443
No 121
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.71 E-value=1.1e-07 Score=85.90 Aligned_cols=113 Identities=22% Similarity=0.280 Sum_probs=76.6
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCC-hhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcc---ccccHHH
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEID-PICALQACMDGFSVVKLNEVIRTVDIVVTATGNK---NVVTREH 182 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~-~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~---~~i~~~~ 182 (258)
++|++|+|||+|.||.++++.|+.+|.+|+++++. +.+...+.+.|+...+..++++++|+|+++.... ..+.++.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~~~~~v~~ei 80 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEVQHEVYEAEI 80 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHhHHHHHHHHH
Confidence 47899999999999999999999999987765543 4444555567887677888899999999996332 2333345
Q ss_pred HhcCCCCcEEEecCCC-ChhhchhhhcCCCceeeeeccCc
Q psy16115 183 MDKMKNGCVVCNMGHS-NTEIDVNSLRTPDLTWEKVRSQV 221 (258)
Q Consensus 183 l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i~~~~~~~~~ 221 (258)
...++++. ++-++.| +.......+. +.+++.-+.|..
T Consensus 81 ~~~l~~g~-iVs~aaG~~i~~~~~~~~-~~~~VvrvmPn~ 118 (314)
T TIGR00465 81 QPLLKEGK-TLGFSHGFNIHFVQIVPP-KDVDVVMVAPKG 118 (314)
T ss_pred HhhCCCCc-EEEEeCCccHhhccccCC-CCCcEEEECCCC
Confidence 56688776 5556666 4443333332 234444444433
No 122
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.71 E-value=9.1e-08 Score=89.92 Aligned_cols=102 Identities=23% Similarity=0.343 Sum_probs=76.9
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHH-HHHhCCCccc---CHHHHHHhCCeeeeccCccc-ccc
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QACMDGFSVV---KLNEVIRTVDIVVTATGNKN-VVT 179 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~-~a~~~g~~~~---~l~e~~~~aDvvi~~~~~~~-~i~ 179 (258)
.+.|++|+|+|+|.||+.+++.++..|+ +|+++++++.+.. .+...|.... ++.+.+.++|+||.|++.++ +++
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~~i~ 258 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHPIIG 258 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCcEEc
Confidence 3689999999999999999999999998 7999999988754 3445554433 34566778999999987664 666
Q ss_pred HHHHhcC-----CCCcEEEecCCC-Chhhchhhh
Q psy16115 180 REHMDKM-----KNGCVVCNMGHS-NTEIDVNSL 207 (258)
Q Consensus 180 ~~~l~~~-----k~g~~ivnvg~~-~~~~~~~~l 207 (258)
.+.++.+ +.+.+++|++.+ |.+..+..+
T Consensus 259 ~~~l~~~~~~~~~~~~vviDla~Prdid~~v~~l 292 (423)
T PRK00045 259 KGMVERALKARRHRPLLLVDLAVPRDIEPEVGEL 292 (423)
T ss_pred HHHHHHHHhhccCCCeEEEEeCCCCCCccccccc
Confidence 6666553 245799999987 555444333
No 123
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.70 E-value=2.5e-08 Score=93.96 Aligned_cols=88 Identities=41% Similarity=0.647 Sum_probs=80.9
Q ss_pred heeeeccccccccccCCCcchh------hHHHHHHHHHhCCCC--CCCCceEECChhhhHHHHhcccCccccccccCCHH
Q psy16115 8 QWTLGFKRRVSPVCIRSNPLII------PQALALIELFNAPAG--RYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDE 79 (258)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~~~~~--~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~ 79 (258)
-|+++++||+|++|+++||.++ +|+|++.++++.. . ++..+|+++|..+|+++|.+.+..+++.++.+++.
T Consensus 378 i~llaeGrlvNl~~~~GhP~~vMd~sfa~Q~la~~~l~~~~-~~~~~~~~v~~lp~~~d~~vA~~~L~~~g~~~~~lt~~ 456 (476)
T PTZ00075 378 IILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWENR-DTGKYPNGVYKLPKELDEKVARLHLKKLGAKLTKLTDK 456 (476)
T ss_pred EEEEeCCCccccCCCCCCCeeEeeHHHHHHHHHHHHHHhcc-CccccCCceEECCHHHHHHHHHHHHHHcCCccccCCHH
Confidence 5899999999999999999984 8999999999883 4 68899999999999999999999999999999999
Q ss_pred HHHhhhcccCCCCCcch
Q psy16115 80 QAKYMGLNKAGPFKPSY 96 (258)
Q Consensus 80 ~~~~~~~~~~g~~~~~~ 96 (258)
+.+|+.....||+.+-.
T Consensus 457 q~~yl~~~~~gp~k~~~ 473 (476)
T PTZ00075 457 QAEYIGVPVDGPYKSDH 473 (476)
T ss_pred HHHhcCCCCCCCCCccc
Confidence 99999999999987643
No 124
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=98.70 E-value=1.6e-08 Score=92.59 Aligned_cols=111 Identities=14% Similarity=0.056 Sum_probs=80.7
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHH-HhCCCccc----C---HHHHHHhCCeeeeccCcccccc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-CMDGFSVV----K---LNEVIRTVDIVVTATGNKNVVT 179 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a-~~~g~~~~----~---l~e~~~~aDvvi~~~~~~~~i~ 179 (258)
.|++|+|.|.|.+|+.+++.++..|++|++++.++++...+ .+.|++.. + +.+.....|+++.+++....++
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~ 259 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHPLE 259 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHHHH
Confidence 78999999999999999999999999988888777665444 34676421 1 1122235799999988766665
Q ss_pred HHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeeecc
Q psy16115 180 REHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVRS 219 (258)
Q Consensus 180 ~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~ 219 (258)
+.++.++++++++.+|.. ..+.....+..+++++.++..
T Consensus 260 -~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~ 300 (357)
T PLN02514 260 -PYLSLLKLDGKLILMGVINTPLQFVTPMLMLGRKVITGSFI 300 (357)
T ss_pred -HHHHHhccCCEEEEECCCCCCCcccHHHHhhCCcEEEEEec
Confidence 788999999999999975 223333345556677776643
No 125
>PLN02494 adenosylhomocysteinase
Probab=98.69 E-value=3e-08 Score=93.23 Aligned_cols=91 Identities=38% Similarity=0.664 Sum_probs=81.9
Q ss_pred chheeeeccccccccccCCCcchh------hHHHHHHHHHhC-CCCCCCCceEECChhhhHHHHhcccCccccccccCCH
Q psy16115 6 TVQWTLGFKRRVSPVCIRSNPLII------PQALALIELFNA-PAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSD 78 (258)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~~-~~~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~ 78 (258)
.--|+++++||+|++|+++||.++ +|+|++.++++. +..++..+|+++|+.+|+++|.+.+..+++.++.+++
T Consensus 377 ~~i~ll~eGrlvNl~~~~GhP~evmd~sFa~Q~la~~~l~~~~~~~~~~~~v~~lP~~~D~~vA~~~L~~~g~~~~~lt~ 456 (477)
T PLN02494 377 SGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKKSGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTKLSK 456 (477)
T ss_pred CEEEEEeCCccccccCCCCCCcceeeHHHHHHHHHHHHHHhcccccccCCCcEECCHHHHHHHHHHHHHHcCCccccCCH
Confidence 345999999999999999999984 999999999986 1157888999999999999999999999999999999
Q ss_pred HHHHhhhcccCCCCCcch
Q psy16115 79 EQAKYMGLNKAGPFKPSY 96 (258)
Q Consensus 79 ~~~~~~~~~~~g~~~~~~ 96 (258)
.+.+|+.....||+.+..
T Consensus 457 ~Q~~yl~~~~~gp~k~~~ 474 (477)
T PLN02494 457 DQADYINVPVEGPYKPAH 474 (477)
T ss_pred HHHHhcCCCcCCCCCccc
Confidence 999999999999987643
No 126
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.68 E-value=1.2e-07 Score=87.89 Aligned_cols=104 Identities=24% Similarity=0.357 Sum_probs=80.0
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHH-HHHhCCCcccCHH---HHHHhCCeeeeccCccc-ccc
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QACMDGFSVVKLN---EVIRTVDIVVTATGNKN-VVT 179 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~-~a~~~g~~~~~l~---e~~~~aDvvi~~~~~~~-~i~ 179 (258)
++.+++++|||+|.||..+|+.|...|. +|++.+|+.++.. .|.+.|..+..++ +.+..+|+||.+|+.++ ++.
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~ 254 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPIIT 254 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccccC
Confidence 3799999999999999999999999996 6999999998865 3667787766555 45678999999987665 666
Q ss_pred HHHHhcC---CCCcEEEecCCC-ChhhchhhhcC
Q psy16115 180 REHMDKM---KNGCVVCNMGHS-NTEIDVNSLRT 209 (258)
Q Consensus 180 ~~~l~~~---k~g~~ivnvg~~-~~~~~~~~l~~ 209 (258)
.+.+... ++.-+++|++.+ |.+..+..+.+
T Consensus 255 ~~~ve~a~~~r~~~livDiavPRdie~~v~~l~~ 288 (414)
T COG0373 255 REMVERALKIRKRLLIVDIAVPRDVEPEVGELPN 288 (414)
T ss_pred HHHHHHHHhcccCeEEEEecCCCCCCccccCcCC
Confidence 5655543 223589999998 66655544443
No 127
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.67 E-value=2.2e-07 Score=84.21 Aligned_cols=127 Identities=11% Similarity=0.122 Sum_probs=81.7
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----------CCC---------c-ccCHHHHHHhCCee
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DGF---------S-VVKLNEVIRTVDIV 168 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----------~g~---------~-~~~l~e~~~~aDvv 168 (258)
++|+|||+|.||..+|..+...|.+|+++|+++.....+.. .+. . ..++++.+++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 68999999999999999999999999999999875433211 111 1 23677888999999
Q ss_pred eeccC----ccccccHHHHhcCCCCcEEEecCCC-ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115 169 VTATG----NKNVVTREHMDKMKNGCVVCNMGHS-NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP 243 (258)
Q Consensus 169 i~~~~----~~~~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 243 (258)
++|.. .+..+.++..+.++++++|..-.++ ......+.+...+ +..+.+.+...+. + +.+.+|.++
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~-R~~g~HffnP~~~-----~---pLVEVv~g~ 158 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPE-RCVVGHPFNPVYL-----L---PLVEVLGGE 158 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcc-cEEEEecCCcccc-----C---ceEEEeCCC
Confidence 99952 2223334555678888865322223 4444444443322 3444444433322 1 577777777
Q ss_pred Ch
Q psy16115 244 KS 245 (258)
Q Consensus 244 ~~ 245 (258)
+.
T Consensus 159 ~T 160 (321)
T PRK07066 159 RT 160 (321)
T ss_pred CC
Confidence 65
No 128
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.66 E-value=9.8e-08 Score=84.77 Aligned_cols=90 Identities=16% Similarity=0.235 Sum_probs=69.9
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc--ccCHHHHHHhCCeeeeccCccc---cccHHHHhc
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS--VVKLNEVIRTVDIVVTATGNKN---VVTREHMDK 185 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~--~~~l~e~~~~aDvvi~~~~~~~---~i~~~~l~~ 185 (258)
+|+|||+|.||..++..|+..|.+|+++|+++...+.+.+.|.. ..+..+.++++|+|++|+.... .+ ++....
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~-~~l~~~ 80 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPS-EQLIPA 80 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHH-HHHHHh
Confidence 69999999999999999999999999999999887777776642 2222356789999999964332 23 345566
Q ss_pred CCCCcEEEecCCCChh
Q psy16115 186 MKNGCVVCNMGHSNTE 201 (258)
Q Consensus 186 ~k~g~~ivnvg~~~~~ 201 (258)
++++.+++|+|.-+.+
T Consensus 81 l~~~~ii~d~~Svk~~ 96 (279)
T PRK07417 81 LPPEAIVTDVGSVKAP 96 (279)
T ss_pred CCCCcEEEeCcchHHH
Confidence 7899999999877443
No 129
>PLN00203 glutamyl-tRNA reductase
Probab=98.65 E-value=1.5e-07 Score=90.32 Aligned_cols=105 Identities=16% Similarity=0.231 Sum_probs=79.9
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHh-C-CC--cc---cCHHHHHHhCCeeeeccCcc-c
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-D-GF--SV---VKLNEVIRTVDIVVTATGNK-N 176 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~-~-g~--~~---~~l~e~~~~aDvvi~~~~~~-~ 176 (258)
++.+++|+|||+|.||+.+++.|...|+ +|+++++++.+...... . +. .. .++.+.+.++|+||.||+.. .
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~p 342 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETP 342 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCC
Confidence 3779999999999999999999999997 69999999888654332 2 22 11 24566788999999997654 4
Q ss_pred cccHHHHhcCCC-------CcEEEecCCC-ChhhchhhhcCC
Q psy16115 177 VVTREHMDKMKN-------GCVVCNMGHS-NTEIDVNSLRTP 210 (258)
Q Consensus 177 ~i~~~~l~~~k~-------g~~ivnvg~~-~~~~~~~~l~~~ 210 (258)
++.++.++.+++ .-++||++.+ |.+..+..+.+-
T Consensus 343 vI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v~~l~~v 384 (519)
T PLN00203 343 LFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVSELESA 384 (519)
T ss_pred eeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccccccCCCC
Confidence 777788877632 2489999999 777766666543
No 130
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.65 E-value=4.5e-08 Score=91.31 Aligned_cols=89 Identities=25% Similarity=0.325 Sum_probs=71.9
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEE------EeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc--Ccccc
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI------TEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT--GNKNV 177 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~------~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~--~~~~~ 177 (258)
.+.|++|+|||+|.+|+..|..++..|.+|++ +|.+......|.+.|+...+++++++.||+|+..+ ...+.
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt~q~~ 112 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHSD 112 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChHHHHH
Confidence 36999999999999999999999999998873 34334445566678888889999999999999973 23455
Q ss_pred ccHHHHhcCCCCcEEEe
Q psy16115 178 VTREHMDKMKNGCVVCN 194 (258)
Q Consensus 178 i~~~~l~~~k~g~~ivn 194 (258)
+.++.+..||+|+.+..
T Consensus 113 v~~~i~p~LK~Ga~L~f 129 (487)
T PRK05225 113 VVRAVQPLMKQGAALGY 129 (487)
T ss_pred HHHHHHhhCCCCCEEEe
Confidence 66788999999999864
No 131
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.64 E-value=2.5e-07 Score=82.23 Aligned_cols=134 Identities=20% Similarity=0.235 Sum_probs=88.7
Q ss_pred CCEEEEEcCchHHHHHHHHHHhCCCEEEE--EeCChhhHHHHHhCCCccc---CH-HHHHHhCCeeeecc---Ccccccc
Q psy16115 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYI--TEIDPICALQACMDGFSVV---KL-NEVIRTVDIVVTAT---GNKNVVT 179 (258)
Q Consensus 109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~--~d~~~~~~~~a~~~g~~~~---~l-~e~~~~aDvvi~~~---~~~~~i~ 179 (258)
..+|+|+|+|.||..+|+.++..|..+.+ +|++......+.+.|.... +. .+....+|+||+|+ .+..++.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l~ 82 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVLK 82 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHHHHH
Confidence 47899999999999999999999987644 5555555556666666432 22 56667799999995 3445553
Q ss_pred HHHHhcCCCCcEEEecCCCChhh---chhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChh
Q psy16115 180 REHMDKMKNGCVVCNMGHSNTEI---DVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSR 246 (258)
Q Consensus 180 ~~~l~~~k~g~~ivnvg~~~~~~---~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 246 (258)
+....+|+|++++|++...... ....+.... ...+.+|....- ....+-.+.++.|-..+...
T Consensus 83 -~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~--~~~~lf~~~~~vltp~~~~~ 148 (279)
T COG0287 83 -ELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPE--ADAGLFENAVVVLTPSEGTE 148 (279)
T ss_pred -HhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCc--ccccccCCCEEEEcCCCCCC
Confidence 5555789999999999884332 223333333 667777654321 23334445666676666554
No 132
>PLN02256 arogenate dehydrogenase
Probab=98.64 E-value=1.9e-07 Score=84.10 Aligned_cols=111 Identities=13% Similarity=0.168 Sum_probs=77.5
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHH-hCCeeeeccCcc---ccccHHH
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIR-TVDIVVTATGNK---NVVTREH 182 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~-~aDvvi~~~~~~---~~i~~~~ 182 (258)
.+.+|+|||+|.||..+++.++..|.+|+++|+++.. ..+...|+.. .+.++++. .+|+|++|+... .++. +.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~-~l 112 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLR-SL 112 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHH-hh
Confidence 6789999999999999999999999999999998743 4455566643 45677664 699999996433 3343 33
Q ss_pred -HhcCCCCcEEEecCCCC---hhhchhhhcCCCceeeeeccCc
Q psy16115 183 -MDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWEKVRSQV 221 (258)
Q Consensus 183 -l~~~k~g~~ivnvg~~~---~~~~~~~l~~~~i~~~~~~~~~ 221 (258)
...++++++++|++... .+.....+. ....+.+.+|..
T Consensus 113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~-~~~~~V~~HPma 154 (304)
T PLN02256 113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLP-EEFDILCTHPMF 154 (304)
T ss_pred hhhccCCCCEEEecCCchHHHHHHHHHhCC-CCCeEEecCCCC
Confidence 34578999999999862 222222222 234566666654
No 133
>PRK10083 putative oxidoreductase; Provisional
Probab=98.63 E-value=5.3e-08 Score=87.87 Aligned_cols=140 Identities=20% Similarity=0.206 Sum_probs=92.0
Q ss_pred CCCEEEEEcCchHHHHHHHHHHh-CCCE-EEEEeCChhhHHHHHhCCCccc------CHHHHHH----hCCeeeeccCcc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKG-LGCV-IYITEIDPICALQACMDGFSVV------KLNEVIR----TVDIVVTATGNK 175 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~-~G~~-Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~----~aDvvi~~~~~~ 175 (258)
.|++|+|.|.|.+|+.+++.++. +|++ ++++++++.+...+.+.|++.. ++.+.+. +.|+++.+++..
T Consensus 160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g~~ 239 (339)
T PRK10083 160 EQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAACHP 239 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCCCH
Confidence 78999999999999999999996 6996 7778988888877777776421 2333333 246999998866
Q ss_pred ccccHHHHhcCCCCcEEEecCCCCh--hhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHHHhh
Q psy16115 176 NVVTREHMDKMKNGCVVCNMGHSNT--EIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQ 253 (258)
Q Consensus 176 ~~i~~~~l~~~k~g~~ivnvg~~~~--~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 253 (258)
..+. +.++.++++++++++|..+. ......+..+.+++.+.......|. .++.++..++....+.+++
T Consensus 240 ~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~g~l~~~~~~~~ 309 (339)
T PRK10083 240 SILE-EAVTLASPAARIVLMGFSSEPSEIVQQGITGKELSIFSSRLNANKFP---------VVIDWLSKGLIDPEKLITH 309 (339)
T ss_pred HHHH-HHHHHhhcCCEEEEEccCCCCceecHHHHhhcceEEEEEecChhhHH---------HHHHHHHcCCCChHHheee
Confidence 5665 78899999999999987521 1122222234555554432222233 3444555555444444566
Q ss_pred hcCC
Q psy16115 254 TCPL 257 (258)
Q Consensus 254 ~~~~ 257 (258)
++|+
T Consensus 310 ~~~l 313 (339)
T PRK10083 310 TFDF 313 (339)
T ss_pred eecH
Confidence 6654
No 134
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.61 E-value=3e-07 Score=82.66 Aligned_cols=91 Identities=21% Similarity=0.304 Sum_probs=71.3
Q ss_pred CCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHHHHhCCCc---ccCHHHHHHhCCeeeeccCcccc--ccHH
Q psy16115 109 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFS---VVKLNEVIRTVDIVVTATGNKNV--VTRE 181 (258)
Q Consensus 109 g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~a~~~g~~---~~~l~e~~~~aDvvi~~~~~~~~--i~~~ 181 (258)
.++|+|||+|.||..+++.++..|. +|+++|+++.+...+.+.|.. ..+.++.++++|+|++|+..... +..+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~ 85 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAAE 85 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHHH
Confidence 4689999999999999999999885 799999999887777777642 23677788899999999754321 2224
Q ss_pred HHhcCCCCcEEEecCCCC
Q psy16115 182 HMDKMKNGCVVCNMGHSN 199 (258)
Q Consensus 182 ~l~~~k~g~~ivnvg~~~ 199 (258)
....++++.+++++|..+
T Consensus 86 l~~~l~~~~iv~dvgs~k 103 (307)
T PRK07502 86 IAPHLKPGAIVTDVGSVK 103 (307)
T ss_pred HHhhCCCCCEEEeCccch
Confidence 455688999999998764
No 135
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.60 E-value=1.3e-07 Score=83.81 Aligned_cols=92 Identities=26% Similarity=0.330 Sum_probs=75.5
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CCCc-------ccCHHHHHHhCCeeeec-----cC
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFS-------VVKLNEVIRTVDIVVTA-----TG 173 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~-------~~~l~e~~~~aDvvi~~-----~~ 173 (258)
....+|.|+|.|-+|...|+++..+|++|++.|++..|+..... .+.+ ..++++.+.++|++|-+ ..
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgak 245 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAK 245 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCC
Confidence 35678999999999999999999999999999999888754322 2222 12578889999999997 35
Q ss_pred ccccccHHHHhcCCCCcEEEecCCC
Q psy16115 174 NKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 174 ~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.+.++..+.++.||||+++||++..
T Consensus 246 aPkLvt~e~vk~MkpGsVivDVAiD 270 (371)
T COG0686 246 APKLVTREMVKQMKPGSVIVDVAID 270 (371)
T ss_pred CceehhHHHHHhcCCCcEEEEEEEc
Confidence 6678888899999999999999754
No 136
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.59 E-value=3.1e-07 Score=73.89 Aligned_cols=105 Identities=20% Similarity=0.180 Sum_probs=72.9
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCC-CEEEEEeCChhhHHHH-HhCCC-----cccCHHHHHHhCCeeeeccCcccc-
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQA-CMDGF-----SVVKLNEVIRTVDIVVTATGNKNV- 177 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~a-~~~g~-----~~~~l~e~~~~aDvvi~~~~~~~~- 177 (258)
++.+++++|+|+|.+|+.+++.+...| .+|+++|+++.+.... .+.+. ...+..+.++++|+|+.|+.....
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP 95 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence 357899999999999999999999986 6899999998776542 23332 344667778899999999644332
Q ss_pred ccHH--HHhcCCCCcEEEecCCCCh-hhchhhhcCC
Q psy16115 178 VTRE--HMDKMKNGCVVCNMGHSNT-EIDVNSLRTP 210 (258)
Q Consensus 178 i~~~--~l~~~k~g~~ivnvg~~~~-~~~~~~l~~~ 210 (258)
.... ....++++.+++|++..+. ..+.+..++.
T Consensus 96 ~~~~~~~~~~~~~~~~v~D~~~~~~~~~l~~~~~~~ 131 (155)
T cd01065 96 GDELPLPPSLLKPGGVVYDVVYNPLETPLLKEARAL 131 (155)
T ss_pred CCCCCCCHHHcCCCCEEEEcCcCCCCCHHHHHHHHC
Confidence 1111 1123689999999987622 2344444443
No 137
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=98.59 E-value=8.5e-08 Score=89.52 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=100.3
Q ss_pred CCCEEEEEc-CchHHHHHHHHHHhCCC---EEEEEeCChhhHHHHHhC--------CCc--cc------CHHHHHH----
Q psy16115 108 GGKQVVLCG-YGEVGKGCCQSLKGLGC---VIYITEIDPICALQACMD--------GFS--VV------KLNEVIR---- 163 (258)
Q Consensus 108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~---~Vi~~d~~~~~~~~a~~~--------g~~--~~------~l~e~~~---- 163 (258)
.|++|+|+| .|.+|..+++.++..|+ +|++.|+++.+++.+++. |++ .. ++.+.+.
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~ 254 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTG 254 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhC
Confidence 689999998 69999999999999764 799999999988877765 443 11 2222221
Q ss_pred --hCCeeeeccCccccccHHHHhcCCCCcEEEec-CCC----ChhhchhhhcCCCceeeeeccCc-ceeecCCCccCCCc
Q psy16115 164 --TVDIVVTATGNKNVVTREHMDKMKNGCVVCNM-GHS----NTEIDVNSLRTPDLTWEKVRSQV-DHVIWPDVNLKNNT 235 (258)
Q Consensus 164 --~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnv-g~~----~~~~~~~~l~~~~i~~~~~~~~~-~~~~~~~~~l~~~~ 235 (258)
..|+++.+++....+. +.++.+++++.++.+ +.. +....+..+..+++++.++.... .+|. .
T Consensus 255 g~g~D~vid~~g~~~~~~-~a~~~l~~~G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~---------~ 324 (410)
T cd08238 255 GQGFDDVFVFVPVPELVE-EADTLLAPDGCLNFFAGPVDKNFSAPLNFYNVHYNNTHYVGTSGGNTDDMK---------E 324 (410)
T ss_pred CCCCCEEEEcCCCHHHHH-HHHHHhccCCeEEEEEccCCCCccccccHHHhhhcCcEEEEeCCCCHHHHH---------H
Confidence 4799999988777775 788889877765544 322 12344445666778888765422 3344 5
Q ss_pred eeEEecCCChhHHHHHhhhcCC
Q psy16115 236 VIDLFRKPKSRLYLEILQTCPL 257 (258)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~ 257 (258)
++.++.+++.++.+.|+|++||
T Consensus 325 ~~~li~~g~i~~~~~it~~~~l 346 (410)
T cd08238 325 AIDLMAAGKLNPARMVTHIGGL 346 (410)
T ss_pred HHHHHHcCCCchhhcEEEEecH
Confidence 6777888888888899999986
No 138
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.59 E-value=2.8e-07 Score=87.54 Aligned_cols=107 Identities=12% Similarity=0.165 Sum_probs=79.3
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC----CCc---ccCHHHHHH---hCCeeeeccC----cc
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD----GFS---VVKLNEVIR---TVDIVVTATG----NK 175 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~----g~~---~~~l~e~~~---~aDvvi~~~~----~~ 175 (258)
.+|+|||+|.||..+|+.|...|.+|.+||+++++.+...+. |.. ..+++++++ ++|+|+++.. ..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 379999999999999999999999999999999886544332 432 457888886 4898888732 33
Q ss_pred ccccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCceeeee
Q psy16115 176 NVVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKV 217 (258)
Q Consensus 176 ~~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~ 217 (258)
.+++ +.+..+++|.++||.|.+ +.......+..+.+...+.
T Consensus 82 ~vi~-~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~flda 125 (470)
T PTZ00142 82 ETID-NLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGM 125 (470)
T ss_pred HHHH-HHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcC
Confidence 4553 566778999999999988 3334455666666655443
No 139
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.58 E-value=3.3e-07 Score=67.96 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=63.1
Q ss_pred EEEEEcCchHHHHHHHHHHhCC---CEEEE-EeCChhhHHHH-HhCCCcc--cCHHHHHHhCCeeeeccCcccc--ccHH
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLG---CVIYI-TEIDPICALQA-CMDGFSV--VKLNEVIRTVDIVVTATGNKNV--VTRE 181 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G---~~Vi~-~d~~~~~~~~a-~~~g~~~--~~l~e~~~~aDvvi~~~~~~~~--i~~~ 181 (258)
|++|||+|.||..+++.+...| .+|++ +++++++.... .+.+... .+..++++.+|+|++|.....+ +-.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~~ 80 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLSE 80 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHHH
Confidence 6899999999999999999999 78884 59999987653 4556543 3689999999999999632221 2112
Q ss_pred HHhcCCCCcEEEecCC
Q psy16115 182 HMDKMKNGCVVCNMGH 197 (258)
Q Consensus 182 ~l~~~k~g~~ivnvg~ 197 (258)
. ....++.++|++.-
T Consensus 81 i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 81 I-PHLLKGKLVISIAA 95 (96)
T ss_dssp H-HHHHTTSEEEEEST
T ss_pred H-hhccCCCEEEEeCC
Confidence 2 45567888888753
No 140
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=98.58 E-value=5.6e-07 Score=80.55 Aligned_cols=131 Identities=14% Similarity=0.151 Sum_probs=86.2
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCccccccH------HHH
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTR------EHM 183 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~~------~~l 183 (258)
+|+|||+|.||..+++.|...|.+|+++|+++. .....+.|.. ..+..++.+++|+|++|..+...+.. ..+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~ 80 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT 80 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence 699999999999999999999999999999875 3444456664 44788888999999999654432221 134
Q ss_pred hcCCCCcEEEecCCCChh---hchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhH
Q psy16115 184 DKMKNGCVVCNMGHSNTE---IDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRL 247 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~~~---~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 247 (258)
..+++|.++||++..+.+ ...+.+....+..... |.... ...-..++...++.+++..|
T Consensus 81 ~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vda-PVsGg----~~~a~~g~l~~~~gG~~~~~ 142 (292)
T PRK15059 81 KASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDA-PVSGG----EIGAREGTLSIMVGGDEAVF 142 (292)
T ss_pred ccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEe-cCCCC----HHHHhcCcEEEEEcCCHHHH
Confidence 457899999999987333 2234444444443332 32211 11223566666666655544
No 141
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=98.58 E-value=2.5e-07 Score=88.24 Aligned_cols=108 Identities=14% Similarity=0.157 Sum_probs=80.4
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC----CCc----ccCHHHHHHh---CCeeeeccCccccc
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD----GFS----VVKLNEVIRT---VDIVVTATGNKNVV 178 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~----g~~----~~~l~e~~~~---aDvvi~~~~~~~~i 178 (258)
.+||+||+|.||..+|+.|...|.+|.+|||++++.+...+. |.. ..+++++++. +|+|+++......+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV 86 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV 86 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence 469999999999999999999999999999999886654332 532 3478888875 99999986444333
Q ss_pred c---HHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCceeeee
Q psy16115 179 T---REHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKV 217 (258)
Q Consensus 179 ~---~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~ 217 (258)
+ ...+..+++|.++||.|.. +.....+.+..+.+...+.
T Consensus 87 ~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~flda 131 (493)
T PLN02350 87 DQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGM 131 (493)
T ss_pred HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeC
Confidence 2 2467788999999999988 3333445666665655443
No 142
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.55 E-value=6.9e-07 Score=79.12 Aligned_cols=85 Identities=19% Similarity=0.345 Sum_probs=65.8
Q ss_pred EEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHHHHhCCCc--ccCHHHHHHhCCeeeeccCccc---cccHHHH
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFS--VVKLNEVIRTVDIVVTATGNKN---VVTREHM 183 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~a~~~g~~--~~~l~e~~~~aDvvi~~~~~~~---~i~~~~l 183 (258)
+|+|||+|.||..+++.++..|. +|+++|+++.+...+.+.|.. ..+..++. ++|+||+|+.... .+. +..
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~-~l~ 79 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIEILP-KLL 79 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHHHHH-HHh
Confidence 69999999999999999998885 799999998887777677753 33566654 5999999964433 332 344
Q ss_pred hcCCCCcEEEecCCC
Q psy16115 184 DKMKNGCVVCNMGHS 198 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~ 198 (258)
. ++++.+++++|..
T Consensus 80 ~-l~~~~iv~d~gs~ 93 (275)
T PRK08507 80 D-IKENTTIIDLGST 93 (275)
T ss_pred c-cCCCCEEEECccc
Confidence 4 7889999998876
No 143
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.55 E-value=4.6e-07 Score=80.78 Aligned_cols=129 Identities=12% Similarity=0.124 Sum_probs=85.9
Q ss_pred EEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCcccccc------HHHHhcC
Q psy16115 114 LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVT------REHMDKM 186 (258)
Q Consensus 114 IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~------~~~l~~~ 186 (258)
|||+|.||..+++.|...|.+|++||+++.+.....+.|.. ..++.++++++|+|++|..+...+. ......+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 58999999999999999999999999999887777677765 3478889999999999965433221 2345578
Q ss_pred CCCcEEEecCCCChh---hchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhH
Q psy16115 187 KNGCVVCNMGHSNTE---IDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRL 247 (258)
Q Consensus 187 k~g~~ivnvg~~~~~---~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 247 (258)
+++.++||++..+.+ ...+.+....+...+. |.... ...-..++...++.++...|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vda-Pv~Gg----~~~a~~g~l~~~~gg~~~~~ 139 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDA-PVSGG----VGGARAGTLTFMVGGVAEEF 139 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEC-CCCCC----HHHHhhCcEEEEECCCHHHH
Confidence 899999999965322 1223444333443332 21110 11123456565666555554
No 144
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.55 E-value=5e-07 Score=81.05 Aligned_cols=103 Identities=19% Similarity=0.186 Sum_probs=75.1
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHH---HhCCeeeeccCcc---ccccHHHH
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVI---RTVDIVVTATGNK---NVVTREHM 183 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~---~~aDvvi~~~~~~---~~i~~~~l 183 (258)
+|+|||+|.||..+++.+...|.+|.+||+++++.+...+.+.. ..+++++. ..+|+|+++.... .+++ +..
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~-~l~ 80 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLE-ELA 80 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHH-HHH
Confidence 69999999999999999999999999999999887766666653 33555544 4589999986443 3342 556
Q ss_pred hcCCCCcEEEecCCCC---hhhchhhhcCCCcee
Q psy16115 184 DKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTW 214 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~---~~~~~~~l~~~~i~~ 214 (258)
..+++|.++||++... .......+..+.+..
T Consensus 81 ~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~ 114 (298)
T TIGR00872 81 PTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHL 114 (298)
T ss_pred hhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeE
Confidence 6788999999998872 222334455544443
No 145
>PLN02858 fructose-bisphosphate aldolase
Probab=98.54 E-value=4.9e-07 Score=95.58 Aligned_cols=137 Identities=12% Similarity=0.044 Sum_probs=94.5
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCcccccc------H
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVT------R 180 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~------~ 180 (258)
.+++||+||+|.||..+|+.|...|.+|.+||+++.+.+...+.|+. ..++.++.+++|+||+|..+...+. .
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 46789999999999999999999999999999999988777777775 4578999999999999964443332 1
Q ss_pred HHHhcCCCCcEEEecCCCChh---hchhhhcCCC--ceeeeeccCcceeecCCCccCCCceeEEecCCChhHHH
Q psy16115 181 EHMDKMKNGCVVCNMGHSNTE---IDVNSLRTPD--LTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYL 249 (258)
Q Consensus 181 ~~l~~~k~g~~ivnvg~~~~~---~~~~~l~~~~--i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 249 (258)
..++.+++|.++||++..+.+ ...+.+.... +..... |... ....-..++...++.+++..|.+
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa-PVsG----g~~~A~~G~L~imvGG~~~~~~~ 151 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA-YVSK----GMSDLLNGKLMIIASGRSDAITR 151 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc-cCcC----CHHHHhcCCeEEEEcCCHHHHHH
Confidence 245678999999999987322 2233444433 333322 1111 01112346677777776665543
No 146
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.53 E-value=4.8e-07 Score=84.68 Aligned_cols=102 Identities=18% Similarity=0.214 Sum_probs=76.1
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHH-HhCC-Cccc---CHHHHHHhCCeeeeccCccc-cc
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQA-CMDG-FSVV---KLNEVIRTVDIVVTATGNKN-VV 178 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a-~~~g-~~~~---~l~e~~~~aDvvi~~~~~~~-~i 178 (258)
.+.|++++|+|+|.+|+.++..|...|+ ++++++|++.+.... .+.+ .... ++.+.+.++|+||.||+.++ ++
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~vi 257 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEYIV 257 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCeeE
Confidence 4789999999999999999999999997 699999998875443 3333 3333 34566778999999988776 55
Q ss_pred cHHHHhcCCCCcEEEecCCC-ChhhchhhhcC
Q psy16115 179 TREHMDKMKNGCVVCNMGHS-NTEIDVNSLRT 209 (258)
Q Consensus 179 ~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~ 209 (258)
..+..+ .+.-+++|.+.+ |.+..+..+.+
T Consensus 258 ~~~~~~--~~~~~~iDLavPRdidp~v~~l~~ 287 (414)
T PRK13940 258 TCKYVG--DKPRVFIDISIPQALDPKLGELEQ 287 (414)
T ss_pred CHHHhC--CCCeEEEEeCCCCCCCccccCcCC
Confidence 544432 234688999999 77766665544
No 147
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.53 E-value=7.9e-07 Score=65.01 Aligned_cols=67 Identities=37% Similarity=0.498 Sum_probs=58.7
Q ss_pred cccCCCEEEEEcCchHHHHHHHHHHhC-CCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 105 VMFGGKQVVLCGYGEVGKGCCQSLKGL-GCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~-G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
..+.+++++|+|+|.+|+.++..+... +.+|.++|+ |+++.|++..+.+.++.+
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r-------------------------di~i~~~~~~~~~~~~~~ 73 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR-------------------------DILVTATPAGVPVLEEAT 73 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-------------------------CEEEEcCCCCCCchHHHH
Confidence 346899999999999999999999998 467999976 999999988888886668
Q ss_pred hcCCCCcEEEecC
Q psy16115 184 DKMKNGCVVCNMG 196 (258)
Q Consensus 184 ~~~k~g~~ivnvg 196 (258)
+.++++.++++++
T Consensus 74 ~~~~~~~~v~~~a 86 (86)
T cd05191 74 AKINEGAVVIDLA 86 (86)
T ss_pred HhcCCCCEEEecC
Confidence 8899999998863
No 148
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.53 E-value=4.4e-07 Score=83.49 Aligned_cols=90 Identities=26% Similarity=0.438 Sum_probs=65.9
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-----ccCHHHHHHhCCeeeeccCcc---ccccHH
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-----VVKLNEVIRTVDIVVTATGNK---NVVTRE 181 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-----~~~l~e~~~~aDvvi~~~~~~---~~i~~~ 181 (258)
++|+|||+|.||.++++.++..|..+.++++++.....+...+.. ..++++.++++|+||+|+... .++. +
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~-~ 79 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAALLA-E 79 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHHHH-H
Confidence 479999999999999999999999888888877654433333322 235677888999999996433 3332 3
Q ss_pred HHh-cCCCCcEEEecCCCCh
Q psy16115 182 HMD-KMKNGCVVCNMGHSNT 200 (258)
Q Consensus 182 ~l~-~~k~g~~ivnvg~~~~ 200 (258)
... .++++++++|+|.-+.
T Consensus 80 l~~~~l~~~~ivtDv~SvK~ 99 (359)
T PRK06545 80 LADLELKPGVIVTDVGSVKG 99 (359)
T ss_pred HhhcCCCCCcEEEeCccccH
Confidence 333 3788999999998743
No 149
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.52 E-value=3.8e-07 Score=81.58 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=72.0
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHH-----------HhCC-------------CcccCHHHHHHhC
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-----------CMDG-------------FSVVKLNEVIRTV 165 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a-----------~~~g-------------~~~~~l~e~~~~a 165 (258)
++|+|||+|.||..+|+.+...|.+|+++|+++.+.+.+ .+.| ....+..+.+++|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 689999999999999999999999999999998775432 1112 1122233567899
Q ss_pred CeeeeccCc-c---ccccHHHHhcCCCCcEEE-ecCCCChhhchhhhcCCCceeeeecc
Q psy16115 166 DIVVTATGN-K---NVVTREHMDKMKNGCVVC-NMGHSNTEIDVNSLRTPDLTWEKVRS 219 (258)
Q Consensus 166 Dvvi~~~~~-~---~~i~~~~l~~~k~g~~iv-nvg~~~~~~~~~~l~~~~i~~~~~~~ 219 (258)
|+|++|... . ..+..+..+.++++++++ |++.-+.....+.+.. .....+.+.
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~-~~r~~g~h~ 142 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQR-PQQVIGMHF 142 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCC-CcceEEEec
Confidence 999999532 2 223334445678898886 7776555444444432 223444433
No 150
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.51 E-value=1.8e-06 Score=81.46 Aligned_cols=87 Identities=22% Similarity=0.284 Sum_probs=69.0
Q ss_pred EEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhH-HHHHhCCCcc-cCHHHHHHhCCeeeeccCc---cccccHHHHh
Q psy16115 111 QVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICA-LQACMDGFSV-VKLNEVIRTVDIVVTATGN---KNVVTREHMD 184 (258)
Q Consensus 111 ~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~-~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~---~~~i~~~~l~ 184 (258)
+|+||| +|.||..+++.++..|.+|+++|+++.+. ..+.+.|+.. .+..+.+.++|+|++|+.. ..++. +...
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~-~l~~ 80 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVIK-EVAP 80 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHHH-HHHh
Confidence 799997 89999999999999999999999998764 3455567653 3677888899999999643 23442 4556
Q ss_pred cCCCCcEEEecCCC
Q psy16115 185 KMKNGCVVCNMGHS 198 (258)
Q Consensus 185 ~~k~g~~ivnvg~~ 198 (258)
.+++++++++++..
T Consensus 81 ~l~~~~iViDvsSv 94 (437)
T PRK08655 81 HVKEGSLLMDVTSV 94 (437)
T ss_pred hCCCCCEEEEcccc
Confidence 68899999999975
No 151
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.51 E-value=1.9e-07 Score=87.33 Aligned_cols=85 Identities=41% Similarity=0.602 Sum_probs=78.6
Q ss_pred hheeeeccccccccccCCCcchh------hHHHHHHHHHhCCCCCCCCceEECChhhhHHHHhcccCccccccccCCHHH
Q psy16115 7 VQWTLGFKRRVSPVCIRSNPLII------PQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQ 80 (258)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~~~~~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~ 80 (258)
--|+++++|++|+.++++||.++ .|+++..+++.+. .++..+|+.+|..+++++|.+.+..+++.++.+++.+
T Consensus 334 ~i~lLa~GrlvNl~~~~ghp~~vmd~sfa~q~l~~~~l~~~~-~~~~~~v~~lp~~~d~~vA~~~l~~~g~~~~~lt~~q 412 (425)
T PRK05476 334 RIILLAEGRLVNLGAATGHPSEVMDMSFANQALAQIELFTNR-GKLEPGVYVLPKELDEEVARLKLKALGVKLDELTEEQ 412 (425)
T ss_pred EEEEEeCCcccccCCCCCCcceeeCHHHHHHHHHHHHHHhcc-CcCCCCeEECCHHHHHHHHHHHHHHcCCccccCCHHH
Confidence 36899999999999999999984 8999999999873 6888999999999999999999999999999999999
Q ss_pred HHhhhcccCCCC
Q psy16115 81 AKYMGLNKAGPF 92 (258)
Q Consensus 81 ~~~~~~~~~g~~ 92 (258)
.+|+..|+.|++
T Consensus 413 ~~y~~~~~~g~~ 424 (425)
T PRK05476 413 AEYIGVWVEGPF 424 (425)
T ss_pred HHHcCCCcCCCC
Confidence 999998888875
No 152
>PLN02712 arogenate dehydrogenase
Probab=98.50 E-value=6.4e-07 Score=88.55 Aligned_cols=112 Identities=15% Similarity=0.220 Sum_probs=77.9
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHH-HhCCeeeeccCc---cccccHHH
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVI-RTVDIVVTATGN---KNVVTREH 182 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~-~~aDvvi~~~~~---~~~i~~~~ 182 (258)
+.++|+|||+|.||+.+++.++.+|.+|+++|++..+ ..+.+.|+.. .+.++++ ..+|+|++|+.. ..++..-.
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~ 129 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLP 129 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhh
Confidence 4578999999999999999999999999999998554 3466677653 4677755 469999999643 33443211
Q ss_pred HhcCCCCcEEEecCCCChh---hchhhhcCCCceeeeeccCc
Q psy16115 183 MDKMKNGCVVCNMGHSNTE---IDVNSLRTPDLTWEKVRSQV 221 (258)
Q Consensus 183 l~~~k~g~~ivnvg~~~~~---~~~~~l~~~~i~~~~~~~~~ 221 (258)
+..++++++|+|++.-+.. .....+. ....+.+.+|..
T Consensus 130 ~~~l~~g~iVvDv~SvK~~~~~~l~~~l~-~~~~~v~~HPMa 170 (667)
T PLN02712 130 LQRLKRNTLFVDVLSVKEFAKNLLLDYLP-EDFDIICSHPMF 170 (667)
T ss_pred hhcCCCCeEEEECCCCcHHHHHHHHHhcC-CCCeEEeeCCcC
Confidence 2458899999999866432 1222232 234566666654
No 153
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.50 E-value=5.6e-07 Score=80.22 Aligned_cols=98 Identities=17% Similarity=0.232 Sum_probs=69.9
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-------CC-----------------Cc-ccCHHHHHHh
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-------DG-----------------FS-VVKLNEVIRT 164 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-------~g-----------------~~-~~~l~e~~~~ 164 (258)
++|+|||+|.||..+|..+...|.+|+++|+++++.+.+.+ .+ .. ..++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 57999999999999999999999999999999887655321 11 11 2356778899
Q ss_pred CCeeeeccCcccccc----HHHHhcCCCCcEE-EecCCCChhhchhhh
Q psy16115 165 VDIVVTATGNKNVVT----REHMDKMKNGCVV-CNMGHSNTEIDVNSL 207 (258)
Q Consensus 165 aDvvi~~~~~~~~i~----~~~l~~~k~g~~i-vnvg~~~~~~~~~~l 207 (258)
+|+|++|.....-+. .+..+.+++++++ +|++..+.....+.+
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~ 129 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFT 129 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhc
Confidence 999999964443222 2344567888877 677765555444433
No 154
>KOG4230|consensus
Probab=98.49 E-value=2.4e-07 Score=87.66 Aligned_cols=194 Identities=19% Similarity=0.230 Sum_probs=126.9
Q ss_pred hHHHHHHHHHhCCCCC-CCCce-EECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCC--CCcchhhh---ccC
Q psy16115 30 PQALALIELFNAPAGR-YKSDV-YLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGP--FKPSYYSL---KRS 102 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~-~~~~V-~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~---~~~ 102 (258)
.+++..+.-+|. |.. +++-| .++|.+++++..--++.+ ..+++++.+.+...+....-.+ ++|...+. .+.
T Consensus 78 ~ell~~I~~lNe-D~tvHGiiVQLPLp~hide~~Vt~aI~p-eKDVDGf~~~NaG~Lak~~g~p~f~PCTPkGcmeLlk~ 155 (935)
T KOG4230|consen 78 GELLREIKALNE-DPTVHGIIVQLPLPAHIDEDTVTEAIDP-EKDVDGFTRINAGRLAKGEGQPTFIPCTPKGCMELLKE 155 (935)
T ss_pred HHHHHHHHhccC-CCccceEEEeccCccccchhhHhhccCc-ccccccccccchhhhhccCCCceeeccChHHHHHHHHH
Confidence 567788888888 322 23333 288889987765545444 3477887766554443221111 34554442 333
Q ss_pred cCcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHH
Q psy16115 103 TDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTRE 181 (258)
Q Consensus 103 ~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~ 181 (258)
.+..+.|+..+|+|-.. +|..++..|+...++|+++... ..++.+.+.++|+|+.+.|.++++..+
T Consensus 156 a~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK-------------T~~lae~v~~ADIvIvAiG~PefVKgd 222 (935)
T KOG4230|consen 156 AGVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK-------------TRNLAEKVSRADIVIVAIGQPEFVKGD 222 (935)
T ss_pred cCCccccceeEEEecccccCChHHHHHHhcCceEEEecCC-------------CccHHHHhccCCEEEEEcCCcceeecc
Confidence 45678999999999998 8999999999999999998532 236788899999999999999999754
Q ss_pred HHhcCCCCcEEEecCCCChhhchhhhcC-----CCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115 182 HMDKMKNGCVVCNMGHSNTEIDVNSLRT-----PDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP 243 (258)
Q Consensus 182 ~l~~~k~g~~ivnvg~~~~~~~~~~l~~-----~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 243 (258)
|+|||+++||+|..-..+.-. ++ |.++......+..-.....+.+.+=++-+||.+.
T Consensus 223 ---WiKpGavVIDvGINyvpD~~K--ksg~klvGDVdfe~Akevas~ITPVPGGVGPMTVAMLmqNt 284 (935)
T KOG4230|consen 223 ---WIKPGAVVIDVGINYVPDPSK--KSGFKLVGDVDFESAKEVASFITPVPGGVGPMTVAMLMQNT 284 (935)
T ss_pred ---cccCCcEEEEccccccCCCCC--cccceEeeecchHhhhhhhhccccCCCCcchHHHHHHHHHH
Confidence 789999999999872221111 11 1122222222333345566666666666666543
No 155
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.48 E-value=1.7e-06 Score=77.11 Aligned_cols=126 Identities=14% Similarity=0.186 Sum_probs=79.4
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-------------------------CCc-ccCHHHHHH
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-------------------------GFS-VVKLNEVIR 163 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-------------------------g~~-~~~l~e~~~ 163 (258)
++|+|||+|.||..+|..+...|.+|+++|++++..+.+.+. ... ..++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 589999999999999999999999999999998765443211 111 235777888
Q ss_pred hCCeeeeccCcc-----ccccHHHHhcCCCCcEEEecCCC-ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCcee
Q psy16115 164 TVDIVVTATGNK-----NVVTREHMDKMKNGCVVCNMGHS-NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVI 237 (258)
Q Consensus 164 ~aDvvi~~~~~~-----~~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (258)
++|+|++|.... .++ ++..+.++++++++..+.. ......+.+...+ +..+.+.....| ....+
T Consensus 84 ~aDlVieavpe~~~~k~~~~-~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~-r~vg~Hf~~p~~--------~~~lv 153 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFY-EELAKVAPEKTIFATNSSTLLPSQFAEATGRPE-KFLALHFANEIW--------KNNTA 153 (287)
T ss_pred CCCEEEEeccCCHHHHHHHH-HHHHhhCCCCCEEEECcccCCHHHHHhhcCCcc-cEEEEcCCCCCC--------cCCeE
Confidence 999999996433 223 2444567888888544444 4444444443322 344443322222 12555
Q ss_pred EEecCCCh
Q psy16115 238 DLFRKPKS 245 (258)
Q Consensus 238 ~l~~~~~~ 245 (258)
.++.+++.
T Consensus 154 evv~~~~t 161 (287)
T PRK08293 154 EIMGHPGT 161 (287)
T ss_pred EEeCCCCC
Confidence 66655553
No 156
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=98.48 E-value=1.1e-07 Score=84.97 Aligned_cols=109 Identities=18% Similarity=0.123 Sum_probs=79.2
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-CHHHHH--HhCCeeeeccCccccccHHHHh
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVI--RTVDIVVTATGNKNVVTREHMD 184 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~l~e~~--~~aDvvi~~~~~~~~i~~~~l~ 184 (258)
.|.+|+|.|.|.+|+.+++.++..|++|++++.++++...+++.|+... +..+.. ...|+++.+.+....+. ..++
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~~~~-~~~~ 233 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPSGLE-LALR 233 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChHHHH-HHHH
Confidence 7899999999999999999999999999999888888777777776532 222212 24799999987655564 6788
Q ss_pred cCCCCcEEEecCCC--ChhhchhhhcCCCceeeee
Q psy16115 185 KMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKV 217 (258)
Q Consensus 185 ~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~ 217 (258)
.+++++.++..+.. ........+..+++++.+.
T Consensus 234 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~i~~~ 268 (319)
T cd08242 234 LVRPRGTVVLKSTYAGPASFDLTKAVVNEITLVGS 268 (319)
T ss_pred HhhcCCEEEEEcccCCCCccCHHHheecceEEEEE
Confidence 89999999886654 2222333444555555543
No 157
>PLN02858 fructose-bisphosphate aldolase
Probab=98.48 E-value=1.2e-06 Score=92.78 Aligned_cols=136 Identities=14% Similarity=0.069 Sum_probs=93.1
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCccc----cc--cH
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKN----VV--TR 180 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~----~i--~~ 180 (258)
..++|++||+|.||..+|+.|...|.+|++||+++.+.......|.. ..++.++++++|+|++|..++. ++ ..
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~ 402 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL 402 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence 35889999999999999999999999999999999887666666654 4578899999999999965443 22 12
Q ss_pred HHHhcCCCCcEEEecCCCChh---hchhhhcC--CCceeeeeccCcceeecCCCccCCCceeEEecCCChhHH
Q psy16115 181 EHMDKMKNGCVVCNMGHSNTE---IDVNSLRT--PDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLY 248 (258)
Q Consensus 181 ~~l~~~k~g~~ivnvg~~~~~---~~~~~l~~--~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ 248 (258)
..+..+++|.++||++..+.+ ...+.+.. ..+..... |.. -....-..++...++.++...|.
T Consensus 403 g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDA-PVs----Gg~~~A~~G~L~imvgG~~~~~~ 470 (1378)
T PLN02858 403 GAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDA-PVS----GGVKRAAMGTLTIMASGTDEALK 470 (1378)
T ss_pred hHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEc-cCC----CChhhhhcCCceEEEECCHHHHH
Confidence 346678999999999987322 22334443 33333322 111 11112344566667777666554
No 158
>KOG0409|consensus
Probab=98.47 E-value=6.8e-07 Score=78.99 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=73.9
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCccccccHH-----
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVTRE----- 181 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~~~----- 181 (258)
..+++|.||+|.||..++..|...|.+|++||++..+.....+.|++. .++.|+.+.+|++|.+.+++.-...-
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~ 113 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKS 113 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCC
Confidence 468999999999999999999999999999999999887777788875 57999999999999986554332211
Q ss_pred -HHhcCCCCcEE-EecCCCC
Q psy16115 182 -HMDKMKNGCVV-CNMGHSN 199 (258)
Q Consensus 182 -~l~~~k~g~~i-vnvg~~~ 199 (258)
.++..+++... ||.+.-|
T Consensus 114 Gvl~g~~~g~~~~vDmSTid 133 (327)
T KOG0409|consen 114 GVLSGIRPGKKATVDMSTID 133 (327)
T ss_pred cceeeccCCCceEEeccccC
Confidence 24455677666 7887764
No 159
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.47 E-value=3e-06 Score=73.17 Aligned_cols=103 Identities=18% Similarity=0.216 Sum_probs=77.5
Q ss_pred cccCCCEEEEEcCchHHHHHHHHHHhCCCE---EEEEeCC----hhhH--------HHHHhCCC-cc-cCHHHHHHhCCe
Q psy16115 105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCV---IYITEID----PICA--------LQACMDGF-SV-VKLNEVIRTVDI 167 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~---Vi~~d~~----~~~~--------~~a~~~g~-~~-~~l~e~~~~aDv 167 (258)
..+.+++++|+|+|..|+.++..|...|++ ++++|++ ..+. ..+...+. .. .++.+.++++|+
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv 100 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV 100 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence 457899999999999999999999999974 9999998 3332 11222221 11 357778889999
Q ss_pred eeeccCccccccHHHHhcCCCCcEEEecCCCChhhchhhhc
Q psy16115 168 VVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 208 (258)
Q Consensus 168 vi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~ 208 (258)
+|.+++ .++++.+.++.|+++.++.+.+.+..+.+.+...
T Consensus 101 lIgaT~-~G~~~~~~l~~m~~~~ivf~lsnP~~e~~~~~A~ 140 (226)
T cd05311 101 FIGVSR-PGVVKKEMIKKMAKDPIVFALANPVPEIWPEEAK 140 (226)
T ss_pred EEeCCC-CCCCCHHHHHhhCCCCEEEEeCCCCCcCCHHHHH
Confidence 999987 8889888899999999988888664444444333
No 160
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.45 E-value=1.3e-06 Score=76.77 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=68.7
Q ss_pred EEEEEcCchHHHHHHHHHHhCCC----EEEEE-eCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCcccccc---HH
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGC----VIYIT-EIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT---RE 181 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~----~Vi~~-d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~---~~ 181 (258)
+|++||+|.||..+++.|...|. +|+++ |+++.+...+.+.|+.. .+..++++++|+||+|.. +..+. .+
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~~ 80 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLTE 80 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHHH
Confidence 69999999999999999999887 78898 99988876666677754 467788889999999973 33332 12
Q ss_pred HHhcCCCCcEEEecCCC-Chhhc
Q psy16115 182 HMDKMKNGCVVCNMGHS-NTEID 203 (258)
Q Consensus 182 ~l~~~k~g~~ivnvg~~-~~~~~ 203 (258)
....++++.++|.+..+ +.+..
T Consensus 81 l~~~~~~~~~iIs~~~g~~~~~l 103 (266)
T PLN02688 81 LRPLLSKDKLLVSVAAGITLADL 103 (266)
T ss_pred HHhhcCCCCEEEEecCCCcHHHH
Confidence 23456788888877555 44333
No 161
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.45 E-value=1.9e-06 Score=77.00 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=67.6
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHH-----------HHhCCCc--------------ccCHHHHHHh
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-----------ACMDGFS--------------VVKLNEVIRT 164 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~-----------a~~~g~~--------------~~~l~e~~~~ 164 (258)
++|+|||+|.||..+|..+...|.+|+++|++++.++. ..+.|.. ..++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 58999999999999999999999999999999987654 2222321 1245 45789
Q ss_pred CCeeeeccCccccccH---HHHhc-C-CCCcEEEecCCC-Chhhchhhhc
Q psy16115 165 VDIVVTATGNKNVVTR---EHMDK-M-KNGCVVCNMGHS-NTEIDVNSLR 208 (258)
Q Consensus 165 aDvvi~~~~~~~~i~~---~~l~~-~-k~g~~ivnvg~~-~~~~~~~~l~ 208 (258)
+|+|++|.....-+.. ..++. + +++++++..+.. +...+...+.
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~ 134 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATK 134 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcC
Confidence 9999999532222221 13344 4 789998776665 5555554443
No 162
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.45 E-value=8.7e-07 Score=81.71 Aligned_cols=102 Identities=9% Similarity=0.083 Sum_probs=73.3
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHh-CCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCc---cccccHHH
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKG-LGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGN---KNVVTREH 182 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~-~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~---~~~i~~~~ 182 (258)
...+|+|||+ |.||.++|+.++. +|.+|+++|++.. ...++++.++++|+|++|+.. ..++. +.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~----------~~~~~~~~v~~aDlVilavPv~~~~~~l~-~l 71 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP----------GSLDPATLLQRADVLIFSAPIRHTAALIE-EY 71 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc----------ccCCHHHHhcCCCEEEEeCCHHHHHHHHH-HH
Confidence 5689999999 9999999999996 4789999997522 123567888999999999633 33443 33
Q ss_pred Hh---cCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCc
Q psy16115 183 MD---KMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQV 221 (258)
Q Consensus 183 l~---~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~ 221 (258)
.. .++++++++|+|.-+..+.-..+ .......+.+|..
T Consensus 72 ~~~~~~l~~~~iVtDVgSvK~~i~~~~~-~~~~~fVG~HPMa 112 (370)
T PRK08818 72 VALAGGRAAGQLWLDVTSIKQAPVAAML-ASQAEVVGLHPMT 112 (370)
T ss_pred hhhhcCCCCCeEEEECCCCcHHHHHHHH-hcCCCEEeeCCCC
Confidence 33 27999999999987544433333 2234677777765
No 163
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.44 E-value=7.3e-07 Score=74.29 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=72.2
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----------CCC-c-------------ccCHHHHHHhC
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DGF-S-------------VVKLNEVIRTV 165 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----------~g~-~-------------~~~l~e~~~~a 165 (258)
+|+|+|+|.||+.+|..+...|++|+++|++++.++.+.+ .|. . ..+++++. ++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6999999999999999999999999999999887554322 111 1 12455555 89
Q ss_pred CeeeeccCcccc----ccHHHHhcCCCCcEEEecCCC-ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEe
Q psy16115 166 DIVVTATGNKNV----VTREHMDKMKNGCVVCNMGHS-NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLF 240 (258)
Q Consensus 166 Dvvi~~~~~~~~----i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 240 (258)
|+|++|..-.-- +-++.-+.++++++|..-+.+ +...+...+... =+..+.+.+ .|.. -...+.++
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p-~R~ig~Hf~-----~P~~---~~~lVEvv 150 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRP-ERFIGMHFF-----NPPH---LMPLVEVV 150 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTG-GGEEEEEE------SSTT---T--EEEEE
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcC-ceEEEEecc-----cccc---cCceEEEe
Confidence 999999522221 222444466888888544444 666666655432 234444332 2221 12677777
Q ss_pred cCCCh
Q psy16115 241 RKPKS 245 (258)
Q Consensus 241 ~~~~~ 245 (258)
.+++.
T Consensus 151 ~~~~T 155 (180)
T PF02737_consen 151 PGPKT 155 (180)
T ss_dssp E-TTS
T ss_pred CCCCC
Confidence 77764
No 164
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.44 E-value=3.6e-07 Score=85.06 Aligned_cols=83 Identities=33% Similarity=0.486 Sum_probs=76.3
Q ss_pred heeeeccccccccccCCCcchh------hHHHHHHHHHhCCCCCCCCceEECChhhhHHHHhcccCccccccccCCHHHH
Q psy16115 8 QWTLGFKRRVSPVCIRSNPLII------PQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQA 81 (258)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~~~~~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~ 81 (258)
-|+++++|++|+.+.++||.++ .|+++..+++... +++..+|+++|+.+++++|.+.+..+++.++.+++.+.
T Consensus 318 i~ll~~GrlvNl~~~~ghp~~vmd~sfa~q~la~~~l~~~~-~~~~~~v~~lp~~~d~~va~~~l~~~g~~~~~lt~~q~ 396 (406)
T TIGR00936 318 IYLLAEGRLVNLAAAEGHPSEVMDMSFANQALAAEYLWKNH-DKLEPGVYRLPKELDEMVARLKLEAMGIEIDELTEEQK 396 (406)
T ss_pred EEEEeCCceecccCCCCCcceeeCHHHHHHHHHHHHHHhcc-cccCCCeEECCHHHHHHHHHHHHHHcCceeccCCHHHH
Confidence 3899999999999999999984 8999999999984 67889999999999999999999999999999999999
Q ss_pred HhhhcccCCC
Q psy16115 82 KYMGLNKAGP 91 (258)
Q Consensus 82 ~~~~~~~~g~ 91 (258)
+|+..|+.|+
T Consensus 397 ~y~~~~~~g~ 406 (406)
T TIGR00936 397 EYLGSWEEGT 406 (406)
T ss_pred HHhcCCcCCC
Confidence 9998777663
No 165
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.43 E-value=1.3e-06 Score=77.56 Aligned_cols=98 Identities=18% Similarity=0.292 Sum_probs=72.7
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCC----EEEEEeCChhhHHHHHh-CCCcc-cCHHHHHHhCCeeeeccCcccccc---H
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGC----VIYITEIDPICALQACM-DGFSV-VKLNEVIRTVDIVVTATGNKNVVT---R 180 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~----~Vi~~d~~~~~~~~a~~-~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~---~ 180 (258)
.++++||+|.||.++++.+...|. +|+++|+++.+.+.+.+ .|+.. .+..++++++|+||+|... ..+. .
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl~ 81 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVIN 81 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHHH
Confidence 579999999999999999998774 59999999988766543 67643 3677888999999999643 3222 1
Q ss_pred HHHhcCCCCcEEEecCCC-Chhhchhhhc
Q psy16115 181 EHMDKMKNGCVVCNMGHS-NTEIDVNSLR 208 (258)
Q Consensus 181 ~~l~~~k~g~~ivnvg~~-~~~~~~~~l~ 208 (258)
+.-..++++.++|.+.-| +.+.+-+.+.
T Consensus 82 ~l~~~~~~~~lvISi~AGi~i~~l~~~l~ 110 (272)
T PRK12491 82 QIKDQIKNDVIVVTIAAGKSIKSTENEFD 110 (272)
T ss_pred HHHHhhcCCcEEEEeCCCCcHHHHHHhcC
Confidence 222345778899999888 6655555553
No 166
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=98.42 E-value=3.4e-07 Score=83.57 Aligned_cols=110 Identities=21% Similarity=0.284 Sum_probs=78.7
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc------CHH---HHH------HhCCeeeec
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV------KLN---EVI------RTVDIVVTA 171 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~------~l~---e~~------~~aDvvi~~ 171 (258)
.|++|+|.|.|.+|+.+++.++..|+ +|+++++++.+...+.+.|++.. +.. +.+ ...|+++.+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~ 256 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEA 256 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEEC
Confidence 78999999999999999999999999 89999988888776667776321 111 112 137999999
Q ss_pred cCccccccHHHHhcCCCCcEEEecCCCC--hhhchhh--hcCCCceeeeec
Q psy16115 172 TGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNS--LRTPDLTWEKVR 218 (258)
Q Consensus 172 ~~~~~~i~~~~l~~~k~g~~ivnvg~~~--~~~~~~~--l~~~~i~~~~~~ 218 (258)
.+....+. +.++.++++++++.+|..+ ....+.. +..+.+++.+..
T Consensus 257 ~g~~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (361)
T cd08231 257 SGHPAAVP-EGLELLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVH 306 (361)
T ss_pred CCChHHHH-HHHHHhccCCEEEEEcCCCCCCccccCHHHHhhcccEEEEcc
Confidence 87655564 7889999999999998652 1222222 344455655543
No 167
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.42 E-value=1.2e-06 Score=79.51 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=70.1
Q ss_pred CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC--------C------Cc-ccCHHHHHHhCCeeeeccC
Q psy16115 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD--------G------FS-VVKLNEVIRTVDIVVTATG 173 (258)
Q Consensus 109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~--------g------~~-~~~l~e~~~~aDvvi~~~~ 173 (258)
..+|+|||+|.||..++..|...|.+|++|++++.+.+..... | +. ..++.+.++.+|+|+++..
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 3489999999999999999999999999999988765443332 2 11 2367788889999999976
Q ss_pred ccccccHHHHhcCCCCcEEEecCCC
Q psy16115 174 NKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 174 ~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
...+ .+.++.++++..+++++.|
T Consensus 84 ~~~~--~~v~~~l~~~~~vi~~~~G 106 (328)
T PRK14618 84 SKAL--RETLAGLPRALGYVSCAKG 106 (328)
T ss_pred hHHH--HHHHHhcCcCCEEEEEeec
Confidence 6543 4778889999999999886
No 168
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=98.40 E-value=3.3e-07 Score=71.38 Aligned_cols=106 Identities=19% Similarity=0.196 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCccccccHHHHhcC
Q psy16115 119 EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGNKNVVTREHMDKM 186 (258)
Q Consensus 119 ~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~~~~i~~~~l~~~ 186 (258)
+||..+++.++.+|++|+++++++.+.+.+++.|++. .++.+.++ ..|+++.|+++...++ ..++.+
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~-~~~~~l 79 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQ-EAIKLL 79 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHH-HHHHHE
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHH-HHHHHh
Confidence 4899999999999999999999999998899998652 12333332 3799999999888886 899999
Q ss_pred CCCcEEEecCCCC---hhhchhhhcCCCceeeeeccCc-ceee
Q psy16115 187 KNGCVVCNMGHSN---TEIDVNSLRTPDLTWEKVRSQV-DHVI 225 (258)
Q Consensus 187 k~g~~ivnvg~~~---~~~~~~~l~~~~i~~~~~~~~~-~~~~ 225 (258)
+++++++.+|... .......+..+++++.++.... ++|.
T Consensus 80 ~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~ 122 (130)
T PF00107_consen 80 RPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGSPEDFQ 122 (130)
T ss_dssp EEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGGHHHHH
T ss_pred ccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCCHHHHH
Confidence 9999999999883 3344566777888888886554 4444
No 169
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.38 E-value=8.1e-07 Score=80.75 Aligned_cols=91 Identities=22% Similarity=0.266 Sum_probs=72.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc------CHHH----HH--HhCCeeeeccCc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV------KLNE----VI--RTVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~------~l~e----~~--~~aDvvi~~~~~ 174 (258)
.|++|+|.|.|.+|+.+++.++..|+ .|++++.++++...+.+.|++.. ++.+ .. +..|+++.+++.
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~ 245 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGGG 245 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCCC
Confidence 68999999999999999999999999 58889998888777777776321 2212 22 147999999887
Q ss_pred cccccHHHHhcCCCCcEEEecCCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHSN 199 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~~ 199 (258)
...+. +.++.++++++++.+|..+
T Consensus 246 ~~~~~-~~~~~l~~~G~~v~~g~~~ 269 (351)
T cd08285 246 QDTFE-QALKVLKPGGTISNVNYYG 269 (351)
T ss_pred HHHHH-HHHHHhhcCCEEEEecccC
Confidence 66665 7889999999999998763
No 170
>PRK14982 acyl-ACP reductase; Provisional
Probab=98.38 E-value=2.5e-06 Score=77.73 Aligned_cols=98 Identities=20% Similarity=0.348 Sum_probs=74.5
Q ss_pred CcccCCCEEEEEcC-chHHHHHHHHHHh-CCC-EEEEEeCChhhHHHH-HhCC-CcccCHHHHHHhCCeeeeccCcc-c-
Q psy16115 104 DVMFGGKQVVLCGY-GEVGKGCCQSLKG-LGC-VIYITEIDPICALQA-CMDG-FSVVKLNEVIRTVDIVVTATGNK-N- 176 (258)
Q Consensus 104 ~~~l~g~~V~IiG~-G~IG~~~a~~l~~-~G~-~Vi~~d~~~~~~~~a-~~~g-~~~~~l~e~~~~aDvvi~~~~~~-~- 176 (258)
+.++.|++|+|+|+ |.||..+++.|.. .|. +++++++++.++... .+.+ .+..++++.+.++|+|+.+++.. .
T Consensus 150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~~~ 229 (340)
T PRK14982 150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPKGV 229 (340)
T ss_pred ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCcCC
Confidence 34689999999998 8999999999975 565 799999987776542 2222 23456788899999999987664 3
Q ss_pred cccHHHHhcCCCCcEEEecCCC-Chhhch
Q psy16115 177 VVTREHMDKMKNGCVVCNMGHS-NTEIDV 204 (258)
Q Consensus 177 ~i~~~~l~~~k~g~~ivnvg~~-~~~~~~ 204 (258)
.++++. ++++.+++|+|++ |.+..+
T Consensus 230 ~I~~~~---l~~~~~viDiAvPRDVd~~v 255 (340)
T PRK14982 230 EIDPET---LKKPCLMIDGGYPKNLDTKV 255 (340)
T ss_pred cCCHHH---hCCCeEEEEecCCCCCCccc
Confidence 366553 5899999999999 665444
No 171
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.38 E-value=1e-06 Score=83.68 Aligned_cols=106 Identities=12% Similarity=0.242 Sum_probs=76.3
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC---C--Cc-ccCHHHHHH---hCCeeeeccCc----ccc
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD---G--FS-VVKLNEVIR---TVDIVVTATGN----KNV 177 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~---g--~~-~~~l~e~~~---~aDvvi~~~~~----~~~ 177 (258)
.|+|||+|.||..+|+.+...|.+|++||+++++.+...+. | +. ..++++++. ++|+|+++... ..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 38999999999999999999999999999999887665544 2 22 345666664 58999988533 344
Q ss_pred ccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCceeeee
Q psy16115 178 VTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKV 217 (258)
Q Consensus 178 i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~ 217 (258)
++ +.+..+++|.++||.|.. +.......+..+.+...+.
T Consensus 81 i~-~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvda 122 (467)
T TIGR00873 81 IN-QLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGS 122 (467)
T ss_pred HH-HHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcC
Confidence 43 556778999999999976 2233345565555554443
No 172
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.36 E-value=2.6e-06 Score=76.08 Aligned_cols=97 Identities=16% Similarity=0.206 Sum_probs=66.9
Q ss_pred CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----------CCC-------------cc-cCHHHHHH
Q psy16115 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DGF-------------SV-VKLNEVIR 163 (258)
Q Consensus 109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----------~g~-------------~~-~~l~e~~~ 163 (258)
-++|+|||+|.||..+|..+...|.+|+++|++++..+.+.+ .|. .. .++ +.++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 82 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDL-EDLA 82 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCH-HHhc
Confidence 368999999999999999999999999999999887654321 121 11 234 4477
Q ss_pred hCCeeeeccCcc----ccccHHHHhcCCCCcEEE-ecCCCChhhchhh
Q psy16115 164 TVDIVVTATGNK----NVVTREHMDKMKNGCVVC-NMGHSNTEIDVNS 206 (258)
Q Consensus 164 ~aDvvi~~~~~~----~~i~~~~l~~~k~g~~iv-nvg~~~~~~~~~~ 206 (258)
++|+|++|.... ..+-++..+.++++++++ |++.-+...+.+.
T Consensus 83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~ 130 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASA 130 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhh
Confidence 899999996332 122234455678898887 6665454433333
No 173
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.35 E-value=4.4e-06 Score=77.34 Aligned_cols=78 Identities=17% Similarity=0.333 Sum_probs=61.8
Q ss_pred CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcc---ccccHHHH
Q psy16115 108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK---NVVTREHM 183 (258)
Q Consensus 108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~---~~i~~~~l 183 (258)
..++|+||| +|.||..+|+.++..|..|+++|+++. .+.++.++++|+|++|+... .++. +..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~------------~~~~~~~~~aDlVilavP~~~~~~~~~-~l~ 163 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW------------DRAEDILADAGMVIVSVPIHLTEEVIA-RLP 163 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc------------hhHHHHHhcCCEEEEeCcHHHHHHHHH-HHh
Confidence 348999999 999999999999999999999998642 24567788999999996332 3442 333
Q ss_pred hcCCCCcEEEecCCCC
Q psy16115 184 DKMKNGCVVCNMGHSN 199 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~~ 199 (258)
. +++|++++|+|...
T Consensus 164 ~-l~~~~iv~Dv~SvK 178 (374)
T PRK11199 164 P-LPEDCILVDLTSVK 178 (374)
T ss_pred C-CCCCcEEEECCCcc
Confidence 3 89999999998863
No 174
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=98.34 E-value=4.6e-06 Score=69.95 Aligned_cols=98 Identities=20% Similarity=0.140 Sum_probs=66.9
Q ss_pred cccCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-C----CCc-----cc---CHHHHHHhCCeeee
Q psy16115 105 VMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM-D----GFS-----VV---KLNEVIRTVDIVVT 170 (258)
Q Consensus 105 ~~l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~----g~~-----~~---~l~e~~~~aDvvi~ 170 (258)
.++++++++|+|. |.+|+.+++.+...|.+|++++|++.+.+...+ . +.. .. ++.+.++++|+|+.
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 4578999999996 999999999999999999999998876543222 1 111 11 23466788999999
Q ss_pred ccCccccccHHHHhcCCCCcEEEecCCC-Chhh
Q psy16115 171 ATGNKNVVTREHMDKMKNGCVVCNMGHS-NTEI 202 (258)
Q Consensus 171 ~~~~~~~i~~~~l~~~k~g~~ivnvg~~-~~~~ 202 (258)
++..........-...+++.+++|+... +...
T Consensus 104 at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~ 136 (194)
T cd01078 104 AGAAGVELLEKLAWAPKPLAVAADVNAVPPVGI 136 (194)
T ss_pred CCCCCceechhhhcccCceeEEEEccCCCCCCc
Confidence 8644432111122234567899999887 4333
No 175
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.31 E-value=2.3e-06 Score=82.16 Aligned_cols=97 Identities=21% Similarity=0.269 Sum_probs=68.5
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHH-----------HhCCC-------------c-ccCHHHHHHh
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-----------CMDGF-------------S-VVKLNEVIRT 164 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a-----------~~~g~-------------~-~~~l~e~~~~ 164 (258)
++|+|||+|.||..+|..+...|..|+++|++++.++.+ .+.|. . ..++++ +.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 689999999999999999999999999999999876653 23341 2 124544 568
Q ss_pred CCeeeeccCccccccH----HHHhcCCCCcEE-EecCCCChhhchhhh
Q psy16115 165 VDIVVTATGNKNVVTR----EHMDKMKNGCVV-CNMGHSNTEIDVNSL 207 (258)
Q Consensus 165 aDvvi~~~~~~~~i~~----~~l~~~k~g~~i-vnvg~~~~~~~~~~l 207 (258)
||+||+|.....-+.. +.-+.+++++++ +|+|.-+...+...+
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~ 134 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAAL 134 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhc
Confidence 9999999533332222 323346888888 588876655443433
No 176
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.30 E-value=3.6e-06 Score=78.95 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=64.9
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc---ccCHHHHH---------------HhCCeeeec
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---VVKLNEVI---------------RTVDIVVTA 171 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~---~~~l~e~~---------------~~aDvvi~~ 171 (258)
++|+|||+|.||..+|..|...|.+|+++|+++.+.+. ...|.. ...+++++ +++|++++|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~-l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDT-INRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHH-HHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 68999999999999999999999999999999988654 333321 11334432 368999999
Q ss_pred cCcc---------cccc---HHHHhcCCCCcEEEecCCC
Q psy16115 172 TGNK---------NVVT---REHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 172 ~~~~---------~~i~---~~~l~~~k~g~~ivnvg~~ 198 (258)
..++ ..+. ....+.+++|.++|+.+..
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv 121 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTS 121 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 7664 1221 2345668999999998875
No 177
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.30 E-value=7.4e-06 Score=78.57 Aligned_cols=100 Identities=11% Similarity=0.110 Sum_probs=66.6
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-------------------CC-Cc-ccCHHHHHHhCCee
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-------------------DG-FS-VVKLNEVIRTVDIV 168 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-------------------~g-~~-~~~l~e~~~~aDvv 168 (258)
++|+|||+|.||..+|..+...|.+|++||+++.+.+...+ .+ +. ..++.+.+++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 58999999999999999999999999999999887543211 12 22 23677889999999
Q ss_pred eeccCcccccc----HHHHhcCCCCcEEEecCCC-ChhhchhhhcC
Q psy16115 169 VTATGNKNVVT----REHMDKMKNGCVVCNMGHS-NTEIDVNSLRT 209 (258)
Q Consensus 169 i~~~~~~~~i~----~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~ 209 (258)
++|.....-+. ++.-+.++++++|.....+ +...+.+.+..
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~ 130 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTH 130 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCC
Confidence 99954332121 2333446777655444334 44444444433
No 178
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.30 E-value=6.1e-06 Score=72.67 Aligned_cols=97 Identities=20% Similarity=0.205 Sum_probs=76.1
Q ss_pred CEEEEEcCchHHHHHHHHHHhCC----CEEEEEeCChhhHH-HHHhCCCc-ccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLG----CVIYITEIDPICAL-QACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G----~~Vi~~d~~~~~~~-~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.++++||+|.||..++.-+...| .+|+++++++++.. .+.++|.. ..+..+...++|+||+|. .+..+. +.+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~Lav-KPq~~~-~vl 79 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAV-KPQDLE-EVL 79 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEe-ChHhHH-HHH
Confidence 57999999999999999999999 36999999998875 55667766 456778889999999997 344443 566
Q ss_pred hcCC---CCcEEEecCCC-Chhhchhhhc
Q psy16115 184 DKMK---NGCVVCNMGHS-NTEIDVNSLR 208 (258)
Q Consensus 184 ~~~k---~g~~ivnvg~~-~~~~~~~~l~ 208 (258)
+.++ ++..+|-+.-| ..+.+-+.+.
T Consensus 80 ~~l~~~~~~~lvISiaAGv~~~~l~~~l~ 108 (266)
T COG0345 80 SKLKPLTKDKLVISIAAGVSIETLERLLG 108 (266)
T ss_pred HHhhcccCCCEEEEEeCCCCHHHHHHHcC
Confidence 6666 68888888887 6666666665
No 179
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.30 E-value=7.2e-06 Score=73.21 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=65.4
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh--------------CCC-------------cc-cCHHHH
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM--------------DGF-------------SV-VKLNEV 161 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~--------------~g~-------------~~-~~l~e~ 161 (258)
++|+|||+|.||..+|..+...|.+|+++|+++++.+.+.+ .+. .. .+. +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 68999999999999999999999999999999887653221 111 11 123 45
Q ss_pred HHhCCeeeeccCcccccc----HHHHhcCCCCcEEEecCCC-Chhhchhhh
Q psy16115 162 IRTVDIVVTATGNKNVVT----REHMDKMKNGCVVCNMGHS-NTEIDVNSL 207 (258)
Q Consensus 162 ~~~aDvvi~~~~~~~~i~----~~~l~~~k~g~~ivnvg~~-~~~~~~~~l 207 (258)
++++|+|++|.....-+. ++.-+.++++++++....+ ......+.+
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~ 133 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATAL 133 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhc
Confidence 788999999964332121 2333456888888766555 433333434
No 180
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.29 E-value=4.9e-06 Score=74.95 Aligned_cols=101 Identities=22% Similarity=0.328 Sum_probs=74.0
Q ss_pred CCCEEEEEcCchHHHHHHHHHHh-CCC-EEEEEeCChhhHHHHHh-C---CCc--ccCHHHHHHhCCeeeeccCccc-cc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQACM-D---GFS--VVKLNEVIRTVDIVVTATGNKN-VV 178 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~-~G~-~Vi~~d~~~~~~~~a~~-~---g~~--~~~l~e~~~~aDvvi~~~~~~~-~i 178 (258)
..++++|+|+|.+|+..++.+.. ++. +|.++++++.+.+...+ . +.. ..+.++++.++|+|+.||.... ++
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~Pl~ 203 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRTPVY 203 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCCcee
Confidence 57899999999999999999975 675 69999999887554222 1 222 3478889999999999975554 55
Q ss_pred cHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCc
Q psy16115 179 TREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDL 212 (258)
Q Consensus 179 ~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i 212 (258)
+ . ++|+|+.+..+|.. ..|.+.+.+..-.+
T Consensus 204 ~-~---~~~~g~hi~~iGs~~p~~~El~~~~~~~a~v 236 (304)
T PRK07340 204 P-E---AARAGRLVVAVGAFTPDMAELAPRTVRGSRL 236 (304)
T ss_pred C-c---cCCCCCEEEecCCCCCCcccCCHHHHhhCeE
Confidence 4 2 47999999999976 34544444444344
No 181
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=98.29 E-value=4.3e-06 Score=75.49 Aligned_cols=110 Identities=13% Similarity=0.085 Sum_probs=80.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHH---HhCCeeeeccCccccc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVI---RTVDIVVTATGNKNVV 178 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~---~~aDvvi~~~~~~~~i 178 (258)
.|++|+|.|.|.+|+.+++.++.+|++|+++++++++...+.+.|++.. ++.+.+ ...|+++.+.+....+
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~ 242 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNAKAI 242 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCchHHH
Confidence 6899999999999999999999999999999998888777777776321 222222 2479999887656566
Q ss_pred cHHHHhcCCCCcEEEecCCCChh--hchhhhcCCCceeeeec
Q psy16115 179 TREHMDKMKNGCVVCNMGHSNTE--IDVNSLRTPDLTWEKVR 218 (258)
Q Consensus 179 ~~~~l~~~k~g~~ivnvg~~~~~--~~~~~l~~~~i~~~~~~ 218 (258)
. ..++.+++++.++++|..+.. .....+..+.+++.+..
T Consensus 243 ~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~ 283 (333)
T cd08296 243 S-ALVGGLAPRGKLLILGAAGEPVAVSPLQLIMGRKSIHGWP 283 (333)
T ss_pred H-HHHHHcccCCEEEEEecCCCCCCcCHHHHhhcccEEEEeC
Confidence 5 788899999999999876322 22222334566666553
No 182
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.29 E-value=3.1e-06 Score=79.22 Aligned_cols=88 Identities=18% Similarity=0.255 Sum_probs=66.2
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-------------------CC-Cc-ccCHHHHHHhCCeee
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-------------------DG-FS-VVKLNEVIRTVDIVV 169 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-------------------~g-~~-~~~l~e~~~~aDvvi 169 (258)
+|+|||+|.||..+|..|...|.+|+++|+++.+...... .| .. ..++.+.++++|+||
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvi 81 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVII 81 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEE
Confidence 6999999999999999999999999999999887643221 12 22 235677888999999
Q ss_pred eccCcccc---------cc---HHHHhcCCCCcEEEecCCC
Q psy16115 170 TATGNKNV---------VT---REHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 170 ~~~~~~~~---------i~---~~~l~~~k~g~~ivnvg~~ 198 (258)
+|..++.. +. ....+.+++|.++++.+.-
T Consensus 82 i~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv 122 (411)
T TIGR03026 82 ICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTV 122 (411)
T ss_pred EEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcC
Confidence 99766531 11 1334567899999998854
No 183
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.28 E-value=2.4e-06 Score=75.67 Aligned_cols=91 Identities=26% Similarity=0.408 Sum_probs=71.9
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh-HHHHHhCCCcccCHHHHHHhCCeeeecc---CccccccHHH
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQACMDGFSVVKLNEVIRTVDIVVTAT---GNKNVVTREH 182 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~-~~~a~~~g~~~~~l~e~~~~aDvvi~~~---~~~~~i~~~~ 182 (258)
|+||+|+|||+|.-|+.-|+.||..|.+|++--+.... ...|.+.|+++.+.+|+++.+|+|+.-+ ....++.++.
T Consensus 16 LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~q~~vy~~~I 95 (338)
T COG0059 16 LKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQQKEVYEKEI 95 (338)
T ss_pred hcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhhHHHHHHHHh
Confidence 68999999999999999999999999997765444333 6678899999999999999999998863 2334555455
Q ss_pred HhcCCCCcEEEecCCC
Q psy16115 183 MDKMKNGCVVCNMGHS 198 (258)
Q Consensus 183 l~~~k~g~~ivnvg~~ 198 (258)
-..|+.|..+. .+.|
T Consensus 96 ~p~Lk~G~aL~-FaHG 110 (338)
T COG0059 96 APNLKEGAALG-FAHG 110 (338)
T ss_pred hhhhcCCceEE-eccc
Confidence 56789888664 3444
No 184
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=98.27 E-value=1.4e-06 Score=79.15 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=69.5
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCccc------CH-HHH---HH--hCCeeeeccCc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV------KL-NEV---IR--TVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~------~l-~e~---~~--~aDvvi~~~~~ 174 (258)
.|++|+|.|.|.+|+.+++.++..|++ +++.++++.+...+.+.|++.. ++ +++ .. +.|+++.+.+.
T Consensus 174 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vdvvld~~g~ 253 (350)
T cd08256 174 FDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPEVDVVEKIKELTGGYGCDIYIEATGH 253 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence 789999999999999999999999985 7778888887766666665321 12 222 21 37999999875
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
...+. +.++.++++++++++|..
T Consensus 254 ~~~~~-~~~~~l~~~G~~v~~g~~ 276 (350)
T cd08256 254 PSAVE-QGLNMIRKLGRFVEFSVF 276 (350)
T ss_pred hHHHH-HHHHHhhcCCEEEEEccC
Confidence 55565 678899999999999865
No 185
>KOG0089|consensus
Probab=98.27 E-value=3.5e-06 Score=73.26 Aligned_cols=198 Identities=18% Similarity=0.186 Sum_probs=124.1
Q ss_pred hHHHHHHHHHhCCCCCCCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCC--CCCcchhh---hccCc
Q psy16115 30 PQALALIELFNAPAGRYKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG--PFKPSYYS---LKRST 103 (258)
Q Consensus 30 ~~~l~~~~l~~~~~~~~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~---~~~~~ 103 (258)
.++++.+...+....-+++.|. ++|.+++++...-++.+ ..++++....+..++....+. ..++...+ +...+
T Consensus 82 ~~l~~~i~~~N~d~sV~GilV~~pv~~h~~eq~i~n~Vs~-eKDVDgfh~~Nigrl~ld~~~~~~lPcTP~gv~eiL~r~ 160 (309)
T KOG0089|consen 82 DELESAIAEANNDPSVHGILVQLPVPQHIQEQYILNAVSP-EKDVDGFHPLNIGRLALDGREPLFLPCTPLGVVEILERT 160 (309)
T ss_pred HHHHHHHHHhcCCCceeeEEEEeeccccccHHHHHhhcCc-ccccccccccchhhhccccccccccCCchHHHHHHHHHh
Confidence 4666777776661122455554 89999987766555433 356777666555554433333 23444444 33445
Q ss_pred CcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEE--------EEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCc
Q psy16115 104 DVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIY--------ITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGN 174 (258)
Q Consensus 104 ~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi--------~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~ 174 (258)
+..+.||++.|+|-.. +|+.+|..|..-|+++. .+.|... ...++.-.+.+|+++.+.+-
T Consensus 161 gI~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVti~hr~t~-----------~~~lk~ht~~adivi~a~g~ 229 (309)
T KOG0089|consen 161 GIETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVTIFHRYTS-----------KPQLKHHTRDADIVISAVGI 229 (309)
T ss_pred CCeecCceEEEEcccccccchHHHHHhhcCCcccccCcceEEEEEcCCC-----------chhHHHHHHhcceeehhcCC
Confidence 7778999999999998 89999999999876543 3333221 11345667889999999999
Q ss_pred cccccHHHHhcCCCCcEEEecCCCChhhchhhh---cCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL---RTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK 242 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l---~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 242 (258)
++++..+ +.|+|+.++|+|...+.+...+. --+.++..+.+-........+|...+-++-+|+.+
T Consensus 230 p~li~~d---~Ik~Ga~vidvgin~v~dp~~a~~~klvgdvdFe~~~~kag~itpVPggvGpmTiAMLl~N 297 (309)
T KOG0089|consen 230 PNLITSD---MIKPGAAVIDVGINRVHDPSTAVGIKLVGDVDFEEASKKAGAITPVPGGVGPMTIAMLLRN 297 (309)
T ss_pred Ccccccc---eeecCceeEecCCCcccccccceeeEEeeeccHHHhhhhcCccccCCCCCCchhHHHHHHH
Confidence 9999855 47999999999988444333221 11223333232222334455567776676666654
No 186
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=98.26 E-value=2.2e-06 Score=78.60 Aligned_cols=90 Identities=21% Similarity=0.297 Sum_probs=70.0
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcc-c-------CHHHHHH-----hCCeeeeccC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSV-V-------KLNEVIR-----TVDIVVTATG 173 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~-~-------~l~e~~~-----~aDvvi~~~~ 173 (258)
.|++|+|.|.|.+|..+++.++.+|++ |+++++++.+...+.+.|++. . +..+.+. ..|+++.+++
T Consensus 183 ~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~vid~~g 262 (365)
T cd05279 183 PGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGVDYAFEVIG 262 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCCcEEEECCC
Confidence 689999999999999999999999996 788888888877666777531 1 1112222 3799999987
Q ss_pred ccccccHHHHhcCC-CCcEEEecCCC
Q psy16115 174 NKNVVTREHMDKMK-NGCVVCNMGHS 198 (258)
Q Consensus 174 ~~~~i~~~~l~~~k-~g~~ivnvg~~ 198 (258)
....+. +.++.++ ++++++.+|..
T Consensus 263 ~~~~~~-~~~~~l~~~~G~~v~~g~~ 287 (365)
T cd05279 263 SADTLK-QALDATRLGGGTSVVVGVP 287 (365)
T ss_pred CHHHHH-HHHHHhccCCCEEEEEecC
Confidence 656665 6788899 99999998764
No 187
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.26 E-value=5.1e-06 Score=83.26 Aligned_cols=89 Identities=19% Similarity=0.266 Sum_probs=69.9
Q ss_pred CEEEEEcCchHHHHHHHHHHhCC--CEEEEEeCChhhHHHHHhCCCc---ccCHHHHHHhCCeeeeccCccc---cccHH
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDPICALQACMDGFS---VVKLNEVIRTVDIVVTATGNKN---VVTRE 181 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G--~~Vi~~d~~~~~~~~a~~~g~~---~~~l~e~~~~aDvvi~~~~~~~---~i~~~ 181 (258)
++|+|||+|.||..+++.++..| .+|+++|+++.+...+.+.|+. ..++++.++++|+|++|+.... ++. +
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~-~ 82 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVLA-D 82 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHHH-H
Confidence 78999999999999999999998 4799999999887777777763 3457788889999999975432 221 2
Q ss_pred HHhcCCCCcEEEecCCCC
Q psy16115 182 HMDKMKNGCVVCNMGHSN 199 (258)
Q Consensus 182 ~l~~~k~g~~ivnvg~~~ 199 (258)
.-+.++++.++++++..+
T Consensus 83 l~~~~~~~~ii~d~~svk 100 (735)
T PRK14806 83 LKPLLSEHAIVTDVGSTK 100 (735)
T ss_pred HHHhcCCCcEEEEcCCCc
Confidence 333467889999998764
No 188
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.26 E-value=6.4e-06 Score=73.14 Aligned_cols=109 Identities=16% Similarity=0.223 Sum_probs=71.9
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHH-----------HHhCCC-------------c-ccCHHHHHHh
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-----------ACMDGF-------------S-VVKLNEVIRT 164 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~-----------a~~~g~-------------~-~~~l~e~~~~ 164 (258)
++|+|||+|.||..+|..+...|.+|+++|+++++.+. ..+.|. . ..+.+ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 58999999999999999999999999999999987642 222331 1 12333 4788
Q ss_pred CCeeeeccCc-----cccccHHHHhcCCCCcEE-EecCCCChhhchhhhcCCCceeeeeccCc
Q psy16115 165 VDIVVTATGN-----KNVVTREHMDKMKNGCVV-CNMGHSNTEIDVNSLRTPDLTWEKVRSQV 221 (258)
Q Consensus 165 aDvvi~~~~~-----~~~i~~~~l~~~k~g~~i-vnvg~~~~~~~~~~l~~~~i~~~~~~~~~ 221 (258)
+|+|++|... ..++ ++..+.+++++++ .|++.-+...+...+...+ ...+.++..
T Consensus 83 aDlVi~av~e~~~~k~~~~-~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~-r~ig~h~~~ 143 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIF-AQLDEIAKPEAILATNTSSLSITELAAATKRPD-KVIGMHFFN 143 (282)
T ss_pred CCeeeecccccHHHHHHHH-HHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCc-ceEEeeccC
Confidence 9999999632 1233 2444567888888 4444436665555554332 344554433
No 189
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.25 E-value=4.2e-06 Score=75.37 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=66.0
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCC--------------Cc-ccCHHHHHHhCCeeeeccCc
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG--------------FS-VVKLNEVIRTVDIVVTATGN 174 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g--------------~~-~~~l~e~~~~aDvvi~~~~~ 174 (258)
.+|+|||+|.||..++..|...|.+|+++|+++...+.....+ .. ..++++.++++|+|++|+..
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 3799999999999999999999999999999987765444432 22 23567788899999999754
Q ss_pred cc---cccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KN---VVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~---~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.. ++. +....++++.+++++..+
T Consensus 82 ~~~~~v~~-~l~~~~~~~~~vi~~~ng 107 (325)
T PRK00094 82 QALREVLK-QLKPLLPPDAPIVWATKG 107 (325)
T ss_pred HHHHHHHH-HHHhhcCCCCEEEEEeec
Confidence 32 232 334456788899988655
No 190
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.25 E-value=3.7e-06 Score=74.50 Aligned_cols=103 Identities=20% Similarity=0.197 Sum_probs=69.0
Q ss_pred CCCEEEEEcCchHHHHHHHHHHh--CCCEEE-EEeCChhhHHH-HHhCCC--cccCHHHHHHhCCeeeeccCccccccHH
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKG--LGCVIY-ITEIDPICALQ-ACMDGF--SVVKLNEVIRTVDIVVTATGNKNVVTRE 181 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~--~G~~Vi-~~d~~~~~~~~-a~~~g~--~~~~l~e~~~~aDvvi~~~~~~~~i~~~ 181 (258)
...+|||||+|.||+.+++.+.. .++++. ++|+++.+... +.+.+. .+.++++++.++|+|++|+.+... .+-
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e~ 83 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RAI 83 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HHH
Confidence 45799999999999999999986 477754 78998877543 334443 246799999999999999755432 223
Q ss_pred HHhcCCCCcEEEecCCC---ChhhchhhhcCCC
Q psy16115 182 HMDKMKNGCVVCNMGHS---NTEIDVNSLRTPD 211 (258)
Q Consensus 182 ~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~ 211 (258)
..+.++.|.-++..+.+ +.+.+.+..+.+.
T Consensus 84 ~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g 116 (271)
T PRK13302 84 VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNG 116 (271)
T ss_pred HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcC
Confidence 34445666656655555 3344444444433
No 191
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.25 E-value=3.5e-06 Score=75.90 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=61.5
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcc---ccccHHHHh
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK---NVVTREHMD 184 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~---~~i~~~~l~ 184 (258)
.+.+|+|+|+|.+|..+|+.|...|.+|.++++++. .++++.++++|+|+++.... .+++ +...
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~------------~~~~~~~~~advvi~~vp~~~~~~v~~-~l~~ 69 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG------------LSLAAVLADADVIVSAVSMKGVRPVAE-QVQA 69 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC------------CCHHHHHhcCCEEEEECChHHHHHHHH-HHHH
Confidence 467899999999999999999999999999998753 35778888999999996443 2232 2212
Q ss_pred -cCCCCcEEEecCCC
Q psy16115 185 -KMKNGCVVCNMGHS 198 (258)
Q Consensus 185 -~~k~g~~ivnvg~~ 198 (258)
.++++.++++++.+
T Consensus 70 ~~~~~~~ivi~~s~g 84 (308)
T PRK14619 70 LNLPPETIIVTATKG 84 (308)
T ss_pred hcCCCCcEEEEeCCc
Confidence 36788999998875
No 192
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=98.25 E-value=2.1e-06 Score=79.45 Aligned_cols=90 Identities=24% Similarity=0.341 Sum_probs=68.7
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhC-CCccc------CHHHHHH------hCCeeeeccC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMD-GFSVV------KLNEVIR------TVDIVVTATG 173 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~-g~~~~------~l~e~~~------~aDvvi~~~~ 173 (258)
.|.+|+|.|.|.+|..+++.++..|. +|++++.++.+.+.+++. +.... ++.+.+. ..|+++.+++
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg 263 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAVG 263 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECCC
Confidence 78999999999999999999999998 599999998887776665 33221 1222222 4799999875
Q ss_pred cc---------------------ccccHHHHhcCCCCcEEEecCCC
Q psy16115 174 NK---------------------NVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 174 ~~---------------------~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.. ..++ +.++.+++++.++++|..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~G~iv~~g~~ 308 (386)
T cd08283 264 MEAHGSPLHKAEQALLKLETDRPDALR-EAIQAVRKGGTVSIIGVY 308 (386)
T ss_pred CcccccccccccccccccccCchHHHH-HHHHHhccCCEEEEEcCC
Confidence 32 2454 788899999999999865
No 193
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=98.24 E-value=4e-06 Score=75.70 Aligned_cols=90 Identities=24% Similarity=0.345 Sum_probs=69.9
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc-----CHHH----HH--HhCCeeeeccCcc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV-----KLNE----VI--RTVDIVVTATGNK 175 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~-----~l~e----~~--~~aDvvi~~~~~~ 175 (258)
.|++|+|.|.|.+|+.+++.++.+|+ +|++++.++.+...+.+.|+... ++.+ .. ++.|+++.+++..
T Consensus 167 ~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid~~~~~ 246 (344)
T cd08284 167 PGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREATEGRGADVVLEAVGGA 246 (344)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCCEEEECCCCH
Confidence 78999999999999999999999997 78888887777666666674211 2222 22 2479999998765
Q ss_pred ccccHHHHhcCCCCcEEEecCCC
Q psy16115 176 NVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 176 ~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
..+. +.++.+++++.++.+|..
T Consensus 247 ~~~~-~~~~~l~~~g~~v~~g~~ 268 (344)
T cd08284 247 AALD-LAFDLVRPGGVISSVGVH 268 (344)
T ss_pred HHHH-HHHHhcccCCEEEEECcC
Confidence 5664 788999999999999876
No 194
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.24 E-value=7.3e-06 Score=74.48 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=71.8
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhC-C-CEEEEEeCChhhHHHHH----hCCCc---ccCHHHHHHhCCeeeeccCcc-cc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGL-G-CVIYITEIDPICALQAC----MDGFS---VVKLNEVIRTVDIVVTATGNK-NV 177 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~-G-~~Vi~~d~~~~~~~~a~----~~g~~---~~~l~e~~~~aDvvi~~~~~~-~~ 177 (258)
..++++|||+|.+|+..++.+... . -+|.++|+++++.+... +.|.. ..+.+++++++|+|++|+.+. .+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~P~ 206 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRKPV 206 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCCcE
Confidence 358999999999999987777653 3 36999999998864322 23432 457899999999999997444 45
Q ss_pred ccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCc
Q psy16115 178 VTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDL 212 (258)
Q Consensus 178 i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i 212 (258)
+.. +++|+|+.+..+|.. ..|.+.+.+....+
T Consensus 207 ~~~---~~l~~g~~v~~vGs~~p~~~Eld~~~l~~a~v 241 (325)
T TIGR02371 207 VKA---DWVSEGTHINAIGADAPGKQELDPEILKNAKI 241 (325)
T ss_pred ecH---HHcCCCCEEEecCCCCcccccCCHHHHhcCcE
Confidence 543 357999999999975 23444344443333
No 195
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.24 E-value=6e-06 Score=79.28 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=67.9
Q ss_pred CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHH-----------HhCCC-------------c-ccCHHHHHH
Q psy16115 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-----------CMDGF-------------S-VVKLNEVIR 163 (258)
Q Consensus 109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a-----------~~~g~-------------~-~~~l~e~~~ 163 (258)
=++|+|||+|.||..+|+.+...|.+|+++|++++.++.+ .+.|. . ..++++ +.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 3689999999999999999999999999999998876543 22231 1 224543 56
Q ss_pred hCCeeeeccCccccccH----HHHhcCCCCcEEE-ecCCCChhhchhhhc
Q psy16115 164 TVDIVVTATGNKNVVTR----EHMDKMKNGCVVC-NMGHSNTEIDVNSLR 208 (258)
Q Consensus 164 ~aDvvi~~~~~~~~i~~----~~l~~~k~g~~iv-nvg~~~~~~~~~~l~ 208 (258)
+||+||+|.....-+.. +.-+.+++++++. |++.-+.......+.
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~ 133 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLA 133 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcC
Confidence 89999999543322222 3334567887775 777666554444443
No 196
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.22 E-value=1.6e-05 Score=71.67 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=51.5
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHH-----------hCCC-------------c-ccCHHHHHHh
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-----------MDGF-------------S-VVKLNEVIRT 164 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~-----------~~g~-------------~-~~~l~e~~~~ 164 (258)
++|+|||+|.||..+|..+...|.+|+++|+++...+.+. +.|. . ..++.+.+++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 4799999999999999999999999999999987654322 2332 1 2467778889
Q ss_pred CCeeeeccCc
Q psy16115 165 VDIVVTATGN 174 (258)
Q Consensus 165 aDvvi~~~~~ 174 (258)
+|+|++|...
T Consensus 83 ad~Vi~avpe 92 (308)
T PRK06129 83 ADYVQESAPE 92 (308)
T ss_pred CCEEEECCcC
Confidence 9999999643
No 197
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=98.22 E-value=2.1e-06 Score=79.47 Aligned_cols=89 Identities=17% Similarity=0.165 Sum_probs=69.4
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cC---------------------------H
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VK---------------------------L 158 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~---------------------------l 158 (258)
.|++|+|.|. |.+|..+++.++.+|+++++.+.++++...+++.|++. .+ +
T Consensus 193 ~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (393)
T cd08246 193 PGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRF 272 (393)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccchH
Confidence 6899999997 99999999999999999888888888887777777421 11 1
Q ss_pred HH----HHH---hCCeeeeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115 159 NE----VIR---TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 159 ~e----~~~---~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.+ +.. +.|+++.+++. ..+. +.++.++++++++.+|..
T Consensus 273 ~~~v~~l~~~~~g~d~vid~~g~-~~~~-~~~~~l~~~G~~v~~g~~ 317 (393)
T cd08246 273 GKAIWDILGGREDPDIVFEHPGR-ATFP-TSVFVCDRGGMVVICAGT 317 (393)
T ss_pred HHHHHHHhCCCCCCeEEEECCch-HhHH-HHHHHhccCCEEEEEccc
Confidence 11 111 57999999876 4454 688999999999998754
No 198
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.22 E-value=1e-05 Score=73.45 Aligned_cols=88 Identities=24% Similarity=0.228 Sum_probs=68.7
Q ss_pred CCCEEEEEcCchHHHHHHHHHH-hCCC-EEEEEeCChhhHHHHHh-----CCCc---ccCHHHHHHhCCeeeeccCcccc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLK-GLGC-VIYITEIDPICALQACM-----DGFS---VVKLNEVIRTVDIVVTATGNKNV 177 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~-~~G~-~Vi~~d~~~~~~~~a~~-----~g~~---~~~l~e~~~~aDvvi~~~~~~~~ 177 (258)
..++++|||+|.+|+..+..+. ..+. +|.++++++++.+...+ .+.. +.++++++.++|+|++||...+.
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~p 205 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKTP 205 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCCc
Confidence 5689999999999998887764 4576 59999999888654322 2433 34678899999999999876665
Q ss_pred ccHHHHhcCCCCcEEEecCCC
Q psy16115 178 VTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 178 i~~~~l~~~k~g~~ivnvg~~ 198 (258)
+- . +++|+|..++.+|..
T Consensus 206 ~i-~--~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 206 VF-S--EKLKKGVHINAVGSF 223 (325)
T ss_pred ch-H--HhcCCCcEEEecCCC
Confidence 53 2 678999999999886
No 199
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.21 E-value=1.1e-05 Score=71.66 Aligned_cols=98 Identities=13% Similarity=0.118 Sum_probs=68.5
Q ss_pred CCEEEEEcCchHHHHHHHHHHhCC----CEEEEEeCChh-hHHHH-HhCCCc-ccCHHHHHHhCCeeeeccCccc---cc
Q psy16115 109 GKQVVLCGYGEVGKGCCQSLKGLG----CVIYITEIDPI-CALQA-CMDGFS-VVKLNEVIRTVDIVVTATGNKN---VV 178 (258)
Q Consensus 109 g~~V~IiG~G~IG~~~a~~l~~~G----~~Vi~~d~~~~-~~~~a-~~~g~~-~~~l~e~~~~aDvvi~~~~~~~---~i 178 (258)
+.+|+|||+|.||..+++.+...| .+|+++|+++. +.... ...|+. ..+..++++++|+||+|..... .+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~vl 82 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAEAL 82 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHHHH
Confidence 458999999999999999999887 57999998764 33332 334664 3467788889999999964333 23
Q ss_pred cHHHHhcCCCCcEEEecCCC-Chhhchhhh
Q psy16115 179 TREHMDKMKNGCVVCNMGHS-NTEIDVNSL 207 (258)
Q Consensus 179 ~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l 207 (258)
. +....++++.++|++..+ +.+.+.+.+
T Consensus 83 ~-~l~~~~~~~~liIs~~aGi~~~~l~~~~ 111 (279)
T PRK07679 83 I-PFKEYIHNNQLIISLLAGVSTHSIRNLL 111 (279)
T ss_pred H-HHHhhcCCCCEEEEECCCCCHHHHHHHc
Confidence 2 333456788899997555 544444433
No 200
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.20 E-value=1.1e-05 Score=75.03 Aligned_cols=87 Identities=20% Similarity=0.192 Sum_probs=62.3
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh----------------CCCcc---cCHHHHHHhCCeeeec
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----------------DGFSV---VKLNEVIRTVDIVVTA 171 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~----------------~g~~~---~~l~e~~~~aDvvi~~ 171 (258)
+|+|||+|.||..+|..+. .|.+|+++|+++.+.+...+ .+... .+..+.++++|+|++|
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~ 80 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIA 80 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEe
Confidence 6999999999999997776 59999999999998765433 11111 2356677899999999
Q ss_pred cCcc-----c-----cccH--HHHhcCCCCcEEEecCCC
Q psy16115 172 TGNK-----N-----VVTR--EHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 172 ~~~~-----~-----~i~~--~~l~~~k~g~~ivnvg~~ 198 (258)
..++ . .+.. +.+..+++|.++|+.|.-
T Consensus 81 Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv 119 (388)
T PRK15057 81 TPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTV 119 (388)
T ss_pred CCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeec
Confidence 7655 1 1110 122336899999998875
No 201
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.19 E-value=1.1e-05 Score=73.10 Aligned_cols=102 Identities=20% Similarity=0.248 Sum_probs=70.0
Q ss_pred CCCEEEEEcCchHHHHHHHHHHh-CCC-EEEEEeCChhhHHHHHhC----C--Cc-ccCHHHHHHhCCeeeeccCcc-cc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQACMD----G--FS-VVKLNEVIRTVDIVVTATGNK-NV 177 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~-~G~-~Vi~~d~~~~~~~~a~~~----g--~~-~~~l~e~~~~aDvvi~~~~~~-~~ 177 (258)
..++++|||+|.+|+.+++.+.. ++. +|.+++|++++.+...+. + +. ..++++.++++|+|++|+... .+
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~~pv 203 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLSTEPL 203 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCCCCE
Confidence 57999999999999999986654 564 799999998876543221 3 22 246788899999999887544 34
Q ss_pred ccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCc
Q psy16115 178 VTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDL 212 (258)
Q Consensus 178 i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i 212 (258)
+.. +++++|..+.-+|.. ..|...+.++...+
T Consensus 204 l~~---~~l~~g~~i~~ig~~~~~~~El~~~~~~~a~~ 238 (314)
T PRK06141 204 VRG---EWLKPGTHLDLVGNFTPDMRECDDEAIRRASV 238 (314)
T ss_pred ecH---HHcCCCCEEEeeCCCCcccccCCHHHHhcCcE
Confidence 543 467999976666654 23333344444433
No 202
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.19 E-value=1.3e-06 Score=68.68 Aligned_cols=102 Identities=19% Similarity=0.284 Sum_probs=61.1
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEE-EeCChhhHHHHHhC--CCcccCHHHHHHhCCeeeeccCccc--cccHHH
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYI-TEIDPICALQACMD--GFSVVKLNEVIRTVDIVVTATGNKN--VVTREH 182 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~-~d~~~~~~~~a~~~--g~~~~~l~e~~~~aDvvi~~~~~~~--~i~~~~ 182 (258)
...+|+|||+|++|..+++.|+..|..|.. +.+++...+.+... .....++++.+..+|++++++.... -+- +.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~va-~~ 87 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEVA-EQ 87 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHHH-HH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHHH-HH
Confidence 457999999999999999999999998766 46666555544332 2334577888899999999964332 222 23
Q ss_pred Hhc---CCCCcEEEecCCC-ChhhchhhhcCC
Q psy16115 183 MDK---MKNGCVVCNMGHS-NTEIDVNSLRTP 210 (258)
Q Consensus 183 l~~---~k~g~~ivnvg~~-~~~~~~~~l~~~ 210 (258)
+.. .++|.+++.++-. +.+++-..-+.|
T Consensus 88 La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~G 119 (127)
T PF10727_consen 88 LAQYGAWRPGQIVVHTSGALGSDVLAPARERG 119 (127)
T ss_dssp HHCC--S-TT-EEEES-SS--GGGGHHHHHTT
T ss_pred HHHhccCCCCcEEEECCCCChHHhhhhHHHCC
Confidence 332 5789999998876 555554444444
No 203
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.18 E-value=6.2e-06 Score=77.58 Aligned_cols=89 Identities=11% Similarity=0.141 Sum_probs=66.3
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-----------------ccCHHHHHHhCCeeee
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-----------------VVKLNEVIRTVDIVVT 170 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-----------------~~~l~e~~~~aDvvi~ 170 (258)
...+|+|||+|.||..+|..+.. |.+|++||+++.+.+... .|.. ..+..+.++++|++|+
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii 82 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYII 82 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence 34689999999999999999876 789999999998876544 3332 2233456788999999
Q ss_pred ccCcc----------cccc--HHHHhcCCCCcEEEecCCC
Q psy16115 171 ATGNK----------NVVT--REHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 171 ~~~~~----------~~i~--~~~l~~~k~g~~ivnvg~~ 198 (258)
|.+|+ .+.. ....+.+++|.++|+.+.-
T Consensus 83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv 122 (425)
T PRK15182 83 TVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTV 122 (425)
T ss_pred EcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 97665 1221 1344678999999998876
No 204
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=98.18 E-value=4.4e-06 Score=75.60 Aligned_cols=108 Identities=20% Similarity=0.252 Sum_probs=76.1
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCC-CEEEEEeCChhhHHHHHhCCCcc-c-----CHHH----HHH--hCCeeeeccCc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDGFSV-V-----KLNE----VIR--TVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~a~~~g~~~-~-----~l~e----~~~--~aDvvi~~~~~ 174 (258)
+|.+++|.|.|.+|..+++.++.+| .+|++++.++.+...+.+.|++. . ++.+ ... ..|+++.|.+.
T Consensus 166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~ 245 (345)
T cd08286 166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAVGI 245 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEECCCC
Confidence 7899999999999999999999999 68888988887766666666532 1 1211 121 47999999876
Q ss_pred cccccHHHHhcCCCCcEEEecCCCC--hhhchhhhcCCCceeee
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEK 216 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~~--~~~~~~~l~~~~i~~~~ 216 (258)
...+. ..++.++++++++++|..+ .......+..+.+++.+
T Consensus 246 ~~~~~-~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~ 288 (345)
T cd08286 246 PATFE-LCQELVAPGGHIANVGVHGKPVDLHLEKLWIKNITITT 288 (345)
T ss_pred HHHHH-HHHHhccCCcEEEEecccCCCCCcCHHHHhhcCcEEEe
Confidence 55554 6778899999999998542 22333333344455443
No 205
>PLN02702 L-idonate 5-dehydrogenase
Probab=98.18 E-value=4e-06 Score=76.69 Aligned_cols=109 Identities=16% Similarity=0.274 Sum_probs=78.3
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCccc--------CHHHHH--------HhCCeeee
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV--------KLNEVI--------RTVDIVVT 170 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~--------~l~e~~--------~~aDvvi~ 170 (258)
.|++|+|.|.|.+|..+++.++.+|++ |++.++++.+.+.+.+.|++.. ++.+.+ ...|+++.
T Consensus 181 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vid 260 (364)
T PLN02702 181 PETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFD 260 (364)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEEEE
Confidence 789999999999999999999999986 7888888877776666775421 222221 13799999
Q ss_pred ccCccccccHHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeee
Q psy16115 171 ATGNKNVVTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKV 217 (258)
Q Consensus 171 ~~~~~~~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~ 217 (258)
+.+....+. +.++.++++++++.+|.. +.......+..+.+++.+.
T Consensus 261 ~~g~~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~ 308 (364)
T PLN02702 261 CVGFNKTMS-TALEATRAGGKVCLVGMGHNEMTVPLTPAAAREVDVVGV 308 (364)
T ss_pred CCCCHHHHH-HHHHHHhcCCEEEEEccCCCCCcccHHHHHhCccEEEEe
Confidence 988655664 889999999999999864 2222233344455565554
No 206
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.18 E-value=5.1e-06 Score=67.57 Aligned_cols=87 Identities=16% Similarity=0.236 Sum_probs=62.0
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCC--------Cc-------ccCHHHHHHhCCeeeeccCcc
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG--------FS-------VVKLNEVIRTVDIVVTATGNK 175 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g--------~~-------~~~l~e~~~~aDvvi~~~~~~ 175 (258)
+|+|+|.|..|.++|..+...|.+|++|.++++......+.+ .. ..++++.++++|+|++++.+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 689999999999999999999999999999886554332211 11 236889999999999986433
Q ss_pred ---ccccHHHHhcCCCCcEEEecCCC
Q psy16115 176 ---NVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 176 ---~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.++. +....++++..++++..|
T Consensus 81 ~~~~~~~-~l~~~l~~~~~ii~~~KG 105 (157)
T PF01210_consen 81 AHREVLE-QLAPYLKKGQIIISATKG 105 (157)
T ss_dssp GHHHHHH-HHTTTSHTT-EEEETS-S
T ss_pred HHHHHHH-HHhhccCCCCEEEEecCC
Confidence 2332 445556788899998776
No 207
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=98.17 E-value=3.5e-06 Score=77.56 Aligned_cols=90 Identities=23% Similarity=0.197 Sum_probs=68.8
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc-----CHHHHHH-----hCCeeeeccCccc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV-----KLNEVIR-----TVDIVVTATGNKN 176 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~-----~l~e~~~-----~aDvvi~~~~~~~ 176 (258)
+|++|+|.|.|.+|+.+++.++.+|+ +|++++.++.+.+.+.+.|+... +..+.+. ..|+++.|.+...
T Consensus 176 ~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~ 255 (375)
T cd08282 176 PGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAIPIDFSDGDPVEQILGLEPGGVDRAVDCVGYEA 255 (375)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCeEeccCcccHHHHHHHhhCCCCCEEEECCCCcc
Confidence 78999999999999999999999998 79889998888877777775321 2222221 3799999976542
Q ss_pred -----------cccHHHHhcCCCCcEEEecCCC
Q psy16115 177 -----------VVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 177 -----------~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.++ +.++.+++++.++.+|..
T Consensus 256 ~~~~~~~~~~~~~~-~~~~~l~~~g~~~~~g~~ 287 (375)
T cd08282 256 RDRGGEAQPNLVLN-QLIRVTRPGGGIGIVGVY 287 (375)
T ss_pred cccccccchHHHHH-HHHHHhhcCcEEEEEecc
Confidence 254 778889999999877653
No 208
>PRK07680 late competence protein ComER; Validated
Probab=98.17 E-value=1.2e-05 Score=71.05 Aligned_cols=87 Identities=16% Similarity=0.255 Sum_probs=64.3
Q ss_pred EEEEEcCchHHHHHHHHHHhCCC----EEEEEeCChhhHHHHHh-C-CCcc-cCHHHHHHhCCeeeeccCccc---cccH
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGC----VIYITEIDPICALQACM-D-GFSV-VKLNEVIRTVDIVVTATGNKN---VVTR 180 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~----~Vi~~d~~~~~~~~a~~-~-g~~~-~~l~e~~~~aDvvi~~~~~~~---~i~~ 180 (258)
+++|||+|.||..++..+...|. +|+++++++.+...... . ++.. .+..+.+..+|+|++|+.... ++.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~- 80 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLLQ- 80 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHHH-
Confidence 69999999999999999998883 69999999877654433 2 4543 467788899999999973222 221
Q ss_pred HHHhcCCCCcEEEecCCC
Q psy16115 181 EHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 181 ~~l~~~k~g~~ivnvg~~ 198 (258)
+....++++.++++++.+
T Consensus 81 ~l~~~l~~~~~iis~~ag 98 (273)
T PRK07680 81 KLAPHLTDEHCLVSITSP 98 (273)
T ss_pred HHHhhcCCCCEEEEECCC
Confidence 333356778899999876
No 209
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.16 E-value=1.1e-05 Score=70.84 Aligned_cols=96 Identities=13% Similarity=0.153 Sum_probs=67.4
Q ss_pred EEEEEcCchHHHHHHHHHHhCCC---EEEEEeCChhhHHHHHh-C-CCcc-cCHHHHHHhCCeeeeccCccccccHHHHh
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGC---VIYITEIDPICALQACM-D-GFSV-VKLNEVIRTVDIVVTATGNKNVVTREHMD 184 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~---~Vi~~d~~~~~~~~a~~-~-g~~~-~~l~e~~~~aDvvi~~~~~~~~i~~~~l~ 184 (258)
+|+|||+|.||..+++.+...|. .+.++++++++.....+ . +... .+..++++++|+|++|+.. ..+. +.++
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p-~~~~-~vl~ 79 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRP-QIAE-EVLR 79 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCH-HHHH-HHHH
Confidence 69999999999999999998874 36789998877654333 3 3443 4678888999999999753 2222 3322
Q ss_pred --cCCCCcEEEecCCC-Chhhchhhhc
Q psy16115 185 --KMKNGCVVCNMGHS-NTEIDVNSLR 208 (258)
Q Consensus 185 --~~k~g~~ivnvg~~-~~~~~~~~l~ 208 (258)
.++++.++|.+.-+ ..+.+-+.+.
T Consensus 80 ~l~~~~~~~vis~~ag~~~~~l~~~~~ 106 (258)
T PRK06476 80 ALRFRPGQTVISVIAATDRAALLEWIG 106 (258)
T ss_pred HhccCCCCEEEEECCCCCHHHHHHHhC
Confidence 24678888888766 4444444443
No 210
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=98.15 E-value=1.3e-05 Score=69.13 Aligned_cols=90 Identities=22% Similarity=0.284 Sum_probs=69.5
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHH-----HhCCeeeeccCccc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVI-----RTVDIVVTATGNKN 176 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~-----~~aDvvi~~~~~~~ 176 (258)
.|++|+|.|.|.+|+.+++.++..|.+|+++++++.+...+.+.|... .+..+.+ ...|+++.+.+...
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~ 213 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPE 213 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHH
Confidence 789999999999999999999999999999999887766665555431 1122211 34799999877644
Q ss_pred cccHHHHhcCCCCcEEEecCCC
Q psy16115 177 VVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 177 ~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.+. ..++.+++++.++++|..
T Consensus 214 ~~~-~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 214 TLA-QALRLLRPGGRIVVVGGT 234 (271)
T ss_pred HHH-HHHHhcccCCEEEEEccC
Confidence 554 678899999999999876
No 211
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=98.14 E-value=9.7e-06 Score=73.72 Aligned_cols=92 Identities=11% Similarity=0.114 Sum_probs=63.7
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec---cCccc-cccH
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA---TGNKN-VVTR 180 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~---~~~~~-~i~~ 180 (258)
++.|++|+|||+|.||+.+++.|...|. +|++++|+..+.. .+-......+....+|+||.| +++++ .+..
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~----~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~ 246 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLP----YRTVVREELSFQDPYDVIFFGSSESAYAFPHLSW 246 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccc----hhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence 4799999999999999999999999996 6999999874311 110000111334578999997 44443 5555
Q ss_pred HHHhcCCCCcEEEecCCC-Chhh
Q psy16115 181 EHMDKMKNGCVVCNMGHS-NTEI 202 (258)
Q Consensus 181 ~~l~~~k~g~~ivnvg~~-~~~~ 202 (258)
+.++..++ -+++|.+.+ |.+.
T Consensus 247 ~~~~~~~~-r~~iDLAvPRdId~ 268 (338)
T PRK00676 247 ESLADIPD-RIVFDFNVPRTFPW 268 (338)
T ss_pred HHHhhccC-cEEEEecCCCCCcc
Confidence 66654332 389999998 6653
No 212
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.14 E-value=1.6e-05 Score=69.83 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=66.1
Q ss_pred CEEEEEcCchHHHHHHHHHHhCC---CEEEEEeCChhhHHHHHh-CCCcc-cCHHHHHHhCCeeeeccCccccccHHHHh
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLG---CVIYITEIDPICALQACM-DGFSV-VKLNEVIRTVDIVVTATGNKNVVTREHMD 184 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G---~~Vi~~d~~~~~~~~a~~-~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~~~~l~ 184 (258)
.+++|||+|.||..++..+...| .+|.++|+++++.+...+ .|... .+..+.+.++|+|++|+.... +. +.++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~-~~-~v~~ 80 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQV-ME-EVLS 80 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHH-HH-HHHH
Confidence 47999999999999999999888 579999999877655444 35543 466777889999999974333 22 3343
Q ss_pred cCCC--CcEEEecCCC-Chhhchhhh
Q psy16115 185 KMKN--GCVVCNMGHS-NTEIDVNSL 207 (258)
Q Consensus 185 ~~k~--g~~ivnvg~~-~~~~~~~~l 207 (258)
.+++ +..++.+..+ ..+.+...+
T Consensus 81 ~l~~~~~~~vvs~~~gi~~~~l~~~~ 106 (267)
T PRK11880 81 ELKGQLDKLVVSIAAGVTLARLERLL 106 (267)
T ss_pred HHHhhcCCEEEEecCCCCHHHHHHhc
Confidence 3332 3566666656 444333333
No 213
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.13 E-value=2.2e-05 Score=70.67 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=64.6
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----CC--------------Cc-ccCHHHHHHhCCeee
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----DG--------------FS-VVKLNEVIRTVDIVV 169 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----~g--------------~~-~~~l~e~~~~aDvvi 169 (258)
++|+|||+|.||..+|..+...|.+|+++|+++++.+.+.+ .+ .. ..+.++.++++|+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 68999999999999999999999999999998877554332 11 11 235667788999999
Q ss_pred eccCccc----cccHHHHhcCCCCcEEE-ecCCCChhhchhhh
Q psy16115 170 TATGNKN----VVTREHMDKMKNGCVVC-NMGHSNTEIDVNSL 207 (258)
Q Consensus 170 ~~~~~~~----~i~~~~l~~~k~g~~iv-nvg~~~~~~~~~~l 207 (258)
+|..... .+-.+.-..++++++++ +++......+.+.+
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~ 127 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAV 127 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhc
Confidence 9964332 12123223456676664 44322444333333
No 214
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=98.13 E-value=3e-06 Score=76.14 Aligned_cols=108 Identities=18% Similarity=0.083 Sum_probs=76.0
Q ss_pred CCCEEEEE--cCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHH----H--hCCeeeeccC
Q psy16115 108 GGKQVVLC--GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVI----R--TVDIVVTATG 173 (258)
Q Consensus 108 ~g~~V~Ii--G~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~----~--~aDvvi~~~~ 173 (258)
.+.+++|+ |.|.+|..+++.++.+|++|++.+.++++...+++.|++.. ++.+.+ . ..|+++.+++
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g 221 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVG 221 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCC
Confidence 56667775 88999999999999999999999999888877777776421 222222 1 4799999988
Q ss_pred ccccccHHHHhcCCCCcEEEecCCC--C-hh-hchhhhcCCCceeeee
Q psy16115 174 NKNVVTREHMDKMKNGCVVCNMGHS--N-TE-IDVNSLRTPDLTWEKV 217 (258)
Q Consensus 174 ~~~~i~~~~l~~~k~g~~ivnvg~~--~-~~-~~~~~l~~~~i~~~~~ 217 (258)
..... +.++.++++++++.+|.. . .. .....+..+++++.+.
T Consensus 222 ~~~~~--~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (324)
T cd08291 222 GGLTG--QILLAMPYGSTLYVYGYLSGKLDEPIDPVDLIFKNKSIEGF 267 (324)
T ss_pred cHHHH--HHHHhhCCCCEEEEEEecCCCCcccCCHHHHhhcCcEEEEE
Confidence 65542 568889999999998854 2 11 2223333455665554
No 215
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.10 E-value=1.6e-05 Score=70.70 Aligned_cols=106 Identities=19% Similarity=0.236 Sum_probs=71.4
Q ss_pred CcccCCCEEEEEcCchHHHHHHHHHHhCC-CEEEEEeCChhhHHHHHh-CCC----cc-cCHHHHHHhCCeeeeccCcc-
Q psy16115 104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACM-DGF----SV-VKLNEVIRTVDIVVTATGNK- 175 (258)
Q Consensus 104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~a~~-~g~----~~-~~l~e~~~~aDvvi~~~~~~- 175 (258)
+..+.+++++|+|+|.+|+.++..|...| .+|++++|+.++.+...+ .+. .. .+..+.+.++|+||.|+...
T Consensus 118 ~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~ 197 (278)
T PRK00258 118 GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGM 197 (278)
T ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCC
Confidence 34578999999999999999999999999 589999999887654322 111 11 12345667899999986322
Q ss_pred -c--cccHHHHhcCCCCcEEEecCCC-ChhhchhhhcC
Q psy16115 176 -N--VVTREHMDKMKNGCVVCNMGHS-NTEIDVNSLRT 209 (258)
Q Consensus 176 -~--~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~ 209 (258)
. ....-..+.++++..++|+--. ....+++.-+.
T Consensus 198 ~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~ 235 (278)
T PRK00258 198 SGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAWAKA 235 (278)
T ss_pred CCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHH
Confidence 1 0111123567889999999765 23444444443
No 216
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=98.10 E-value=1.1e-05 Score=72.97 Aligned_cols=109 Identities=16% Similarity=0.182 Sum_probs=79.0
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cC-----H-HHHHHhCCeeeeccCccccccH
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VK-----L-NEVIRTVDIVVTATGNKNVVTR 180 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~-----l-~e~~~~aDvvi~~~~~~~~i~~ 180 (258)
.|.+++|.|.|.+|+.+++.++.+|++|+++++++++...+.+.|++. .+ . ...-...|+++.|.+....+ .
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~~~-~ 247 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASHDL-D 247 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcchH-H
Confidence 689999999999999999999999999999998887776666666542 11 1 11123579999998776445 4
Q ss_pred HHHhcCCCCcEEEecCCCChh--hchhhhcCCCceeeee
Q psy16115 181 EHMDKMKNGCVVCNMGHSNTE--IDVNSLRTPDLTWEKV 217 (258)
Q Consensus 181 ~~l~~~k~g~~ivnvg~~~~~--~~~~~l~~~~i~~~~~ 217 (258)
+.++.+++++.++++|..+.. .....+..+.+++.+.
T Consensus 248 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~ 286 (337)
T cd05283 248 PYLSLLKPGGTLVLVGAPEEPLPVPPFPLIFGRKSVAGS 286 (337)
T ss_pred HHHHHhcCCCEEEEEeccCCCCccCHHHHhcCceEEEEe
Confidence 788999999999999876222 2333333455665554
No 217
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=98.09 E-value=1.8e-06 Score=65.31 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=60.4
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc--ccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS--VVKLNEVIRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~--~~~l~e~~~~aDvvi~~~~~~~~i~~~~l 183 (258)
+++|++|+|||.|++|..-++.|...|++|+++.+... ..+..++ ...+++.+.++|+|+.|++.+. ++.+..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~----~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~-~n~~i~ 78 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIE----FSEGLIQLIRREFEEDLDGADLVFAATDDPE-LNEAIY 78 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEH----HHHTSCEEEESS-GGGCTTESEEEE-SS-HH-HHHHHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchh----hhhhHHHHHhhhHHHHHhhheEEEecCCCHH-HHHHHH
Confidence 46899999999999999999999999999999987751 1112221 2234455778999999886655 444666
Q ss_pred hcCCCCcEEEecCC
Q psy16115 184 DKMKNGCVVCNMGH 197 (258)
Q Consensus 184 ~~~k~g~~ivnvg~ 197 (258)
+..+.-.+++|+.-
T Consensus 79 ~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 79 ADARARGILVNVVD 92 (103)
T ss_dssp HHHHHTTSEEEETT
T ss_pred HHHhhCCEEEEECC
Confidence 66676778888763
No 218
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.08 E-value=2.3e-05 Score=65.59 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=56.9
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc---------------------c-cCHHHHHHhCCe
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---------------------V-VKLNEVIRTVDI 167 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~---------------------~-~~l~e~~~~aDv 167 (258)
.+|+|||+|.+|..+|..+...|.+|+++|.++++..... .|.. . .+.++.++.+|+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~-~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv 79 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN-NGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADV 79 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH-TTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh-hccccccccchhhhhccccccccchhhhhhhhhhhccce
Confidence 3799999999999999999999999999999998765432 2211 1 235566778999
Q ss_pred eeeccCcccc---------cc---HHHHhcCCCCcEEEecCCC
Q psy16115 168 VVTATGNKNV---------VT---REHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 168 vi~~~~~~~~---------i~---~~~l~~~k~g~~ivnvg~~ 198 (258)
+++|.+|+.- +. .+..+.++++.++|.-+.-
T Consensus 80 ~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 80 VFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp EEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred EEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 9999654421 11 1334567889999988765
No 219
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=98.07 E-value=8.1e-06 Score=73.88 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=70.3
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-c------CHHHHHH-----hCCeeeeccCcc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-V------KLNEVIR-----TVDIVVTATGNK 175 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~------~l~e~~~-----~aDvvi~~~~~~ 175 (258)
+|++|+|.|.|.+|+.+++.++..|++|++.+.++++...+.+.|++. . ++.+.+. ..|+++.+.+..
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~ 244 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGIP 244 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcCCCH
Confidence 689999999999999999999999999999988887776666666531 1 1222121 489999998755
Q ss_pred ccccHHHHhcCCCCcEEEecCCC
Q psy16115 176 NVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 176 ~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
..+. ..++.+++++.++.+|..
T Consensus 245 ~~~~-~~~~~l~~~g~~i~~g~~ 266 (345)
T cd08260 245 ETCR-NSVASLRKRGRHVQVGLT 266 (345)
T ss_pred HHHH-HHHHHhhcCCEEEEeCCc
Confidence 5554 678899999999999875
No 220
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=98.06 E-value=8.6e-06 Score=73.45 Aligned_cols=90 Identities=22% Similarity=0.318 Sum_probs=68.1
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-cC-----HHHHHH---hCCeeeeccCcccc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-VK-----LNEVIR---TVDIVVTATGNKNV 177 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~~-----l~e~~~---~aDvvi~~~~~~~~ 177 (258)
+|++|+|.|.|.+|+.+++.++..|. +|++++.++.+...+.+.|.+. .+ +.+... +.|+++.+.+....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~~~~ 244 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGAPAA 244 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCCHHH
Confidence 78999999999999999999999999 7999988877665555566421 11 222222 27999998765445
Q ss_pred ccHHHHhcCCCCcEEEecCCC
Q psy16115 178 VTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 178 i~~~~l~~~k~g~~ivnvg~~ 198 (258)
+. +.++.++++++++++|..
T Consensus 245 ~~-~~~~~L~~~G~~v~~g~~ 264 (339)
T cd08232 245 LA-SALRVVRPGGTVVQVGML 264 (339)
T ss_pred HH-HHHHHHhcCCEEEEEecC
Confidence 54 778899999999998754
No 221
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.06 E-value=3.5e-06 Score=76.31 Aligned_cols=90 Identities=23% Similarity=0.339 Sum_probs=68.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcc------cCH---H----HHHH--hCCeeeec
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSV------VKL---N----EVIR--TVDIVVTA 171 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~------~~l---~----e~~~--~aDvvi~~ 171 (258)
+|++|+|.|.|.+|..+++.++.+|++ |++++.++++.....+.|.+. .+. . +... +.|+++.|
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vld~ 241 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIEC 241 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEEEC
Confidence 789999999999999999999999997 888888777766555556532 111 1 1222 27999999
Q ss_pred cCccccccHHHHhcCCCCcEEEecCCC
Q psy16115 172 TGNKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 172 ~~~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.+....+. +.++.++++++++.+|..
T Consensus 242 ~g~~~~~~-~~~~~l~~~G~~v~~g~~ 267 (343)
T cd05285 242 TGAESCIQ-TAIYATRPGGTVVLVGMG 267 (343)
T ss_pred CCCHHHHH-HHHHHhhcCCEEEEEccC
Confidence 87654554 778899999999998865
No 222
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=98.03 E-value=3.6e-05 Score=70.29 Aligned_cols=108 Identities=18% Similarity=0.205 Sum_probs=78.9
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHH-hCCCcc-c------CHHHHHH-----hCCeeeeccC
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSV-V------KLNEVIR-----TVDIVVTATG 173 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~-~~g~~~-~------~l~e~~~-----~aDvvi~~~~ 173 (258)
+|++|+|.|. |.+|+.+++.++.+|++|++++.++.+.+.++ +.|++. . ++.+.+. +.|+++.+.+
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG 237 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVG 237 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCC
Confidence 7999999999 99999999999999999999988888776665 577642 1 2333332 3799999987
Q ss_pred ccccccHHHHhcCCCCcEEEecCCCC-hh-------hchhhhcCCCceeeee
Q psy16115 174 NKNVVTREHMDKMKNGCVVCNMGHSN-TE-------IDVNSLRTPDLTWEKV 217 (258)
Q Consensus 174 ~~~~i~~~~l~~~k~g~~ivnvg~~~-~~-------~~~~~l~~~~i~~~~~ 217 (258)
.. .+. +.++.++++++++.+|... .. .....+..+++++.+.
T Consensus 238 ~~-~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~ 287 (348)
T PLN03154 238 GD-MLD-AALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGF 287 (348)
T ss_pred HH-HHH-HHHHHhccCCEEEEECccccCCCCCCCCcccHHHHhhccceEEEE
Confidence 64 454 7899999999999998641 11 1223344556666654
No 223
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=98.03 E-value=2.7e-05 Score=71.82 Aligned_cols=90 Identities=21% Similarity=0.257 Sum_probs=70.3
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-c-----C--HHHHHH-----hCCeeeeccC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-V-----K--LNEVIR-----TVDIVVTATG 173 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~-----~--l~e~~~-----~aDvvi~~~~ 173 (258)
.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+.+.|++. . + ..+.+. ..|+++.+++
T Consensus 190 ~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~~~d~vld~~g 269 (373)
T cd08299 190 PGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLTEMTDGGVDFSFEVIG 269 (373)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecccccchhHHHHHHHHhCCCCeEEEECCC
Confidence 68999999999999999999999999 7999999998888887777631 1 1 222222 4799999988
Q ss_pred ccccccHHHHhcC-CCCcEEEecCCC
Q psy16115 174 NKNVVTREHMDKM-KNGCVVCNMGHS 198 (258)
Q Consensus 174 ~~~~i~~~~l~~~-k~g~~ivnvg~~ 198 (258)
....+. +.+..+ +++++++.+|..
T Consensus 270 ~~~~~~-~~~~~~~~~~G~~v~~g~~ 294 (373)
T cd08299 270 RLDTMK-AALASCHEGYGVSVIVGVP 294 (373)
T ss_pred CcHHHH-HHHHhhccCCCEEEEEccC
Confidence 766665 555544 578999999875
No 224
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=98.03 E-value=1.8e-05 Score=68.39 Aligned_cols=105 Identities=20% Similarity=0.325 Sum_probs=69.8
Q ss_pred cccCCCEEEEEcCchHHHHHHHHHHhCCCEEE-EEeC----------ChhhHHHHHh-CC-------CcccCHHHHHH-h
Q psy16115 105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEI----------DPICALQACM-DG-------FSVVKLNEVIR-T 164 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi-~~d~----------~~~~~~~a~~-~g-------~~~~~l~e~~~-~ 164 (258)
.++.|++|+|.|+|.+|+.+++.|..+|++|+ +.|. +...+...++ .| ....+.++++. +
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~ 106 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD 106 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence 45799999999999999999999999999988 6776 5555443322 22 11223333332 6
Q ss_pred CCeeeeccCccccccHHHHhcCCCCcEEEecCCC-Ch-hhchhhhcCCCc
Q psy16115 165 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS-NT-EIDVNSLRTPDL 212 (258)
Q Consensus 165 aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~-~~-~~~~~~l~~~~i 212 (258)
+|+++.|+ ..+.++.+....++ +.+|--|-. .. +..-+.|..+.+
T Consensus 107 ~Dvlip~a-~~~~i~~~~~~~l~--a~~I~egAN~~~t~~a~~~L~~rGi 153 (227)
T cd01076 107 CDILIPAA-LENQITADNADRIK--AKIIVEAANGPTTPEADEILHERGV 153 (227)
T ss_pred ccEEEecC-ccCccCHHHHhhce--eeEEEeCCCCCCCHHHHHHHHHCCC
Confidence 89999998 67788888888887 444433333 21 122245555555
No 225
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.02 E-value=3.8e-05 Score=69.81 Aligned_cols=88 Identities=20% Similarity=0.201 Sum_probs=67.2
Q ss_pred CCCEEEEEcCchHHHHHHHHHH-hCCC-EEEEEeCChhhHHHHHh-----CCCc---ccCHHHHHHhCCeeeeccCcc-c
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLK-GLGC-VIYITEIDPICALQACM-----DGFS---VVKLNEVIRTVDIVVTATGNK-N 176 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~-~~G~-~Vi~~d~~~~~~~~a~~-----~g~~---~~~l~e~~~~aDvvi~~~~~~-~ 176 (258)
..++++|||+|.+|+..++.+. ..+. +|.+++|++.+.+...+ .+.. ..++++.+.++|+|+.||... .
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~p 207 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSETP 207 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCCc
Confidence 4679999999999999999997 4675 69999999887654221 2443 246788899999999997544 4
Q ss_pred cccHHHHhcCCCCcEEEecCCC
Q psy16115 177 VVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 177 ~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
++..+ ++|+|..+..+|..
T Consensus 208 ~i~~~---~l~~g~~i~~vg~~ 226 (326)
T TIGR02992 208 ILHAE---WLEPGQHVTAMGSD 226 (326)
T ss_pred EecHH---HcCCCcEEEeeCCC
Confidence 55533 47999999888865
No 226
>KOG2380|consensus
Probab=98.00 E-value=4.2e-05 Score=68.84 Aligned_cols=135 Identities=12% Similarity=0.092 Sum_probs=88.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHH-hCCeeeeccCcc---ccccHHH
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIR-TVDIVVTATGNK---NVVTREH 182 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~-~aDvvi~~~~~~---~~i~~~~ 182 (258)
+-.+|+|||+|.+|+..|..+...|..++.+||+.... .+...|.. +..+.++++ ..|+|+.|+... .++..--
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyss-aa~~yg~~~ft~lhdlcerhpDvvLlctsilsiekilatyp 129 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSS-AAEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEKILATYP 129 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHH-HHHHhcccccccHHHHHhcCCCEEEEEehhhhHHHHHHhcC
Confidence 56899999999999999999999999999999988543 45556654 456777776 589999997433 2332223
Q ss_pred HhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115 183 MDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP 243 (258)
Q Consensus 183 l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 243 (258)
++.+|.|++++++-.- .+..++..---++.++...++.-.+-.-..+|=+-..||.=++.+
T Consensus 130 fqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig 192 (480)
T KOG2380|consen 130 FQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIG 192 (480)
T ss_pred chhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeecc
Confidence 5668999999988765 222233322334566665554322112222333335677666655
No 227
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.00 E-value=1.6e-05 Score=67.75 Aligned_cols=87 Identities=24% Similarity=0.243 Sum_probs=61.5
Q ss_pred EEEEEcCchHHHHHHHHHHhC--CCE-EEEEeCChhhHHHHHhC-C-CcccCHHHHHHhCCeeeeccCccccccHHHHhc
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGL--GCV-IYITEIDPICALQACMD-G-FSVVKLNEVIRTVDIVVTATGNKNVVTREHMDK 185 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~--G~~-Vi~~d~~~~~~~~a~~~-g-~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~ 185 (258)
+|++||+|.||..+.+.++.- ..+ +.+||++.++...+.+. + ....++++++.+.|++++|.+...+-+ -..+.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~Av~e-~~~~~ 80 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEAVRE-YVPKI 80 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHHHHH-HhHHH
Confidence 799999999999999999854 455 88899999886543332 2 234679999999999999975554332 34455
Q ss_pred CCCCcEEEecCCC
Q psy16115 186 MKNGCVVCNMGHS 198 (258)
Q Consensus 186 ~k~g~~ivnvg~~ 198 (258)
++.|.-++-++.|
T Consensus 81 L~~g~d~iV~SVG 93 (255)
T COG1712 81 LKAGIDVIVMSVG 93 (255)
T ss_pred HhcCCCEEEEech
Confidence 5655444444444
No 228
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.99 E-value=2.9e-05 Score=65.72 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=62.7
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh-HHHH-HhCC--CcccCHHHHHHhCCeeeeccCccccc--cHHHH
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQA-CMDG--FSVVKLNEVIRTVDIVVTATGNKNVV--TREHM 183 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~-~~~a-~~~g--~~~~~l~e~~~~aDvvi~~~~~~~~i--~~~~l 183 (258)
++++|+|.|.||..+++++...|.+|++-.++..+ ...+ ...+ ++..+.++..+.+|+|+++..-.... .++..
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~ 81 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAELR 81 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHHH
Confidence 57999999999999999999999998887555444 3322 2222 34457889999999999996433322 12444
Q ss_pred hcCCCCcEEEecCCC
Q psy16115 184 DKMKNGCVVCNMGHS 198 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~ 198 (258)
+.++ |.++||+..+
T Consensus 82 ~~~~-~KIvID~tnp 95 (211)
T COG2085 82 DALG-GKIVIDATNP 95 (211)
T ss_pred HHhC-CeEEEecCCC
Confidence 4455 7899998775
No 229
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.98 E-value=3.2e-05 Score=69.99 Aligned_cols=100 Identities=17% Similarity=0.300 Sum_probs=72.5
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhC-CC-EEEEEeCChhhHHHHH----hCCCcc---cCHHHHHHhCCeeeeccCcc-cc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGL-GC-VIYITEIDPICALQAC----MDGFSV---VKLNEVIRTVDIVVTATGNK-NV 177 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~-G~-~Vi~~d~~~~~~~~a~----~~g~~~---~~l~e~~~~aDvvi~~~~~~-~~ 177 (258)
.-++++|||+|..|+..++.+... .. +|.+|++++++.+... +.+... .+.++.+++||+|++||.+. .+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~P~ 206 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSREPL 206 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCCce
Confidence 458999999999999998888754 33 6999999998865322 123332 36889999999999987544 45
Q ss_pred ccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCC
Q psy16115 178 VTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTP 210 (258)
Q Consensus 178 i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~ 210 (258)
++. +++|+|+.+..+|.. ..|.+.+.+...
T Consensus 207 ~~~---~~l~~G~hi~~iGs~~p~~~Eld~~~l~~a 239 (315)
T PRK06823 207 LQA---EDIQPGTHITAVGADSPGKQELDAELVARA 239 (315)
T ss_pred eCH---HHcCCCcEEEecCCCCcccccCCHHHHhhC
Confidence 553 467999999999976 344444444433
No 230
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=97.97 E-value=2.6e-05 Score=72.04 Aligned_cols=90 Identities=21% Similarity=0.213 Sum_probs=69.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-c--------CHHHHH------HhCCeeeec
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-V--------KLNEVI------RTVDIVVTA 171 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~--------~l~e~~------~~aDvvi~~ 171 (258)
.|.+|+|.|.|.+|+.+++.++..|+ +|++.+.++.+...+.+.|++. . +..+.+ +..|+++.+
T Consensus 203 ~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld~ 282 (384)
T cd08265 203 PGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEA 282 (384)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhcCCCCCCEEEEC
Confidence 78999999999999999999999999 7999988888777677777632 1 111211 147999999
Q ss_pred cCcc-ccccHHHHhcCCCCcEEEecCCC
Q psy16115 172 TGNK-NVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 172 ~~~~-~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.+.. ..+. +.++.++++++++++|..
T Consensus 283 ~g~~~~~~~-~~~~~l~~~G~~v~~g~~ 309 (384)
T cd08265 283 AGAPPATIP-QMEKSIAINGKIVYIGRA 309 (384)
T ss_pred CCCcHHHHH-HHHHHHHcCCEEEEECCC
Confidence 7753 3443 778889999999999865
No 231
>PRK06046 alanine dehydrogenase; Validated
Probab=97.96 E-value=6e-05 Score=68.54 Aligned_cols=101 Identities=21% Similarity=0.264 Sum_probs=71.1
Q ss_pred CCCEEEEEcCchHHHHHHHHHHh-CCC-EEEEEeCChhhHHHHHh-----CCCc---ccCHHHHHHhCCeeeeccCcc-c
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQACM-----DGFS---VVKLNEVIRTVDIVVTATGNK-N 176 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~-~G~-~Vi~~d~~~~~~~~a~~-----~g~~---~~~l~e~~~~aDvvi~~~~~~-~ 176 (258)
.-++++|||+|.+|+..++.+.. .+. +|.++|+++.+.....+ .+.. +.+++++++ +|+|++||.+. .
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~P 206 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRKP 206 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCCc
Confidence 35899999999999999998874 456 48889999877654322 1332 346788887 99999997544 4
Q ss_pred cccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCc
Q psy16115 177 VVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDL 212 (258)
Q Consensus 177 ~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i 212 (258)
+++. +++|+|+.+..+|.. ..|.+.+.+....+
T Consensus 207 ~~~~---~~l~~g~hV~~iGs~~p~~~El~~~~~~~a~v 242 (326)
T PRK06046 207 VVKA---EWIKEGTHINAIGADAPGKQELDPEILLRAKV 242 (326)
T ss_pred EecH---HHcCCCCEEEecCCCCCccccCCHHHHhCCcE
Confidence 5553 357999999999975 24444444444444
No 232
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=97.96 E-value=5e-05 Score=69.68 Aligned_cols=90 Identities=24% Similarity=0.297 Sum_probs=72.0
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc------CHHHHH-----HhCCeeeeccCcc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV------KLNEVI-----RTVDIVVTATGNK 175 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~-----~~aDvvi~~~~~~ 175 (258)
.|++|+|.|.|.+|..+++.++..|+ +|++++.++.+...+.+.|++.. ++.+.+ .+.|+++.+.+..
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~~ 265 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTGVP 265 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCCCc
Confidence 68999999999999999999999999 58999999888777667665321 222222 2479999998876
Q ss_pred ccccHHHHhcCCCCcEEEecCCC
Q psy16115 176 NVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 176 ~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
..+. +.++.+++++.++.+|..
T Consensus 266 ~~~~-~~~~~l~~~G~~v~~g~~ 287 (365)
T cd08278 266 AVIE-QAVDALAPRGTLALVGAP 287 (365)
T ss_pred HHHH-HHHHHhccCCEEEEeCcC
Confidence 6665 789999999999999865
No 233
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.95 E-value=2.9e-05 Score=70.22 Aligned_cols=87 Identities=22% Similarity=0.237 Sum_probs=55.2
Q ss_pred CCEEEEEcCchHHHHHHHHHHh-CCC-EEEEEeCChhhHHHHH---h-CCCc---ccCHHHHHHhCCeeeeccCccc---
Q psy16115 109 GKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQAC---M-DGFS---VVKLNEVIRTVDIVVTATGNKN--- 176 (258)
Q Consensus 109 g~~V~IiG~G~IG~~~a~~l~~-~G~-~Vi~~d~~~~~~~~a~---~-~g~~---~~~l~e~~~~aDvvi~~~~~~~--- 176 (258)
.++++|||+|..|+..++.+.. ++. +|.+|++++.+.+... . .+.. ..+.++++++||+|++||....
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~P 207 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPAP 207 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCCc
Confidence 4799999999999999988865 565 6999999998754321 1 2433 3478999999999999975444
Q ss_pred cccHHHHhcCCCCcEEEecCCC
Q psy16115 177 VVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 177 ~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
+++. +++++|..|..+|..
T Consensus 208 ~~~~---~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 208 VFDA---EWLKPGTHINAIGSY 226 (313)
T ss_dssp SB-G---GGS-TT-EEEE-S-S
T ss_pred cccH---HHcCCCcEEEEecCC
Confidence 5653 378999999999987
No 234
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.94 E-value=5.4e-05 Score=68.12 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=71.6
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhC-CC-EEEEEeCChhhHHHHH-h----CCCc---ccCHHHHHHhCCeeeeccCcc-c
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGL-GC-VIYITEIDPICALQAC-M----DGFS---VVKLNEVIRTVDIVVTATGNK-N 176 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~-G~-~Vi~~d~~~~~~~~a~-~----~g~~---~~~l~e~~~~aDvvi~~~~~~-~ 176 (258)
.-++++|||+|..|+..++.+... .. +|.+|++++.+.+... + .+.. ..+.++++.+||+|++||... .
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~P 195 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDTP 195 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCc
Confidence 458999999999999888888754 54 6999999998855321 1 2433 247999999999999987544 4
Q ss_pred cccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCC
Q psy16115 177 VVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTP 210 (258)
Q Consensus 177 ~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~ 210 (258)
+++.+ ++|||..+.-+|.. ..|.+.+.+...
T Consensus 196 ~~~~~---~l~pg~hV~aiGs~~p~~~El~~~~l~~a 229 (301)
T PRK06407 196 IFNRK---YLGDEYHVNLAGSNYPNRREAEHSVLNDA 229 (301)
T ss_pred EecHH---HcCCCceEEecCCCCCCcccCCHHHHHhC
Confidence 55533 67999999888876 234443444433
No 235
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.93 E-value=2.2e-05 Score=66.82 Aligned_cols=91 Identities=15% Similarity=0.205 Sum_probs=65.0
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhH-HHHHhCC-Cccc--C-HHHHHHhCCeeeeccCccccccH
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA-LQACMDG-FSVV--K-LNEVIRTVDIVVTATGNKNVVTR 180 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~-~~a~~~g-~~~~--~-l~e~~~~aDvvi~~~~~~~~i~~ 180 (258)
++.|++|+|+|.|.+|..-++.|..+|++|++++++.... ....+.+ +... + ..+.+.++|+|+.|++.+. ++.
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~-ln~ 84 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE-LNR 84 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH-HHH
Confidence 4789999999999999999999999999999998765432 2222222 2211 1 1345678999999987654 444
Q ss_pred HHHhcCCCCcEEEecCC
Q psy16115 181 EHMDKMKNGCVVCNMGH 197 (258)
Q Consensus 181 ~~l~~~k~g~~ivnvg~ 197 (258)
......+...+++|+.-
T Consensus 85 ~i~~~a~~~~ilvn~~d 101 (205)
T TIGR01470 85 RVAHAARARGVPVNVVD 101 (205)
T ss_pred HHHHHHHHcCCEEEECC
Confidence 66666666678888653
No 236
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.93 E-value=4.5e-05 Score=65.69 Aligned_cols=105 Identities=17% Similarity=0.221 Sum_probs=78.2
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHh---CCeeeec---c-CccccccHHH
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRT---VDIVVTA---T-GNKNVVTREH 182 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~---aDvvi~~---~-~~~~~i~~~~ 182 (258)
+++.||+|+||..++++++..|..|++||+++...+.+...|++ ..+++++++. .-+|-+. . -+..+++ +.
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~l 80 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-DL 80 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-HH
Confidence 68999999999999999999999999999999988888888875 3467888764 2343332 2 3455664 66
Q ss_pred HhcCCCCcEEEecCCCChhhc---hhhhcCCCceeee
Q psy16115 183 MDKMKNGCVVCNMGHSNTEID---VNSLRTPDLTWEK 216 (258)
Q Consensus 183 l~~~k~g~~ivnvg~~~~~~~---~~~l~~~~i~~~~ 216 (258)
-..|.+|-++||-|...-.+. .+.+..+.|....
T Consensus 81 a~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD 117 (300)
T COG1023 81 APLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLD 117 (300)
T ss_pred HhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEe
Confidence 667899999999988743333 3456666665543
No 237
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=97.92 E-value=6.1e-05 Score=67.69 Aligned_cols=89 Identities=22% Similarity=0.222 Sum_probs=71.4
Q ss_pred CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-------CHHHHHH-----hCCeeeeccCc
Q psy16115 108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-------KLNEVIR-----TVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-------~l~e~~~-----~aDvvi~~~~~ 174 (258)
+|++|+|.| .|.+|+.+++.++..|++|++.++++++.+.+.+.|++.. ++.+.++ +.|+++.+.+.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~ 217 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGG 217 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCH
Confidence 789999999 5999999999999999999999988888777777776421 2333332 37999999876
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.. + .+.++.++++++++.+|..
T Consensus 218 ~~-~-~~~~~~l~~~G~iv~~G~~ 239 (325)
T TIGR02825 218 EF-S-NTVIGQMKKFGRIAICGAI 239 (325)
T ss_pred HH-H-HHHHHHhCcCcEEEEecch
Confidence 53 4 4789999999999999864
No 238
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=97.92 E-value=1.4e-05 Score=69.91 Aligned_cols=71 Identities=44% Similarity=0.766 Sum_probs=52.1
Q ss_pred Ccchh------hHHHHHHHHHhCC-CCCCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcc
Q psy16115 25 NPLII------PQALALIELFNAP-AGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPS 95 (258)
Q Consensus 25 ~~~~~------~~~l~~~~l~~~~-~~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 95 (258)
||.++ +|+|++.+++..+ +.++..+|+++|..+|++||++.+..+++.++.+++.+.+|+..+..||+.+.
T Consensus 188 HP~eVMd~SFa~QaLa~~~L~~~~~~~~~~~~V~~lP~~lDe~VA~~kL~~lGi~id~Lt~eQ~~YL~~~~~GP~k~~ 265 (268)
T PF05221_consen 188 HPSEVMDMSFANQALAQIYLWKNPNSGKLEPGVYPLPKELDEEVARLKLKSLGIKIDKLTEEQAEYLGSWQEGPFKPD 265 (268)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHTGTTGGSTSSEEE--HHHHHHHHHHHHGGGT-------HHHHHHHTS-TTS-SS-T
T ss_pred CchhhhhhHhHHHHHHHHHHHhCcCccccCCCEEECCccchHHHHHHHHHHcCCccccCCHHHHHHcCCCCCCCCCcc
Confidence 78874 9999999999983 14689999999999999999999999999999999999999999999998764
No 239
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.91 E-value=7.7e-05 Score=67.04 Aligned_cols=107 Identities=19% Similarity=0.274 Sum_probs=69.7
Q ss_pred CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----------CCC-cc-------------cCHHHHHH
Q psy16115 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DGF-SV-------------VKLNEVIR 163 (258)
Q Consensus 109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----------~g~-~~-------------~~l~e~~~ 163 (258)
-++|+|||.|.||..+|..+...|..|+.+|++++.+..+.. .|. .. .++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 479999999999999999999977999999999665443221 111 00 1111 567
Q ss_pred hCCeeeeccCccccccH----HHHhcCCCCcEE-EecCCCChhhchhhhcCCCceeeee
Q psy16115 164 TVDIVVTATGNKNVVTR----EHMDKMKNGCVV-CNMGHSNTEIDVNSLRTPDLTWEKV 217 (258)
Q Consensus 164 ~aDvvi~~~~~~~~i~~----~~l~~~k~g~~i-vnvg~~~~~~~~~~l~~~~i~~~~~ 217 (258)
+||+|+++.--.--+.. +.-+..++++++ .|+|.-+.....+..+..+ +..+.
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rpe-r~iG~ 139 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPE-RFIGL 139 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCch-hEEEE
Confidence 89999998522222222 344456889888 5666556666666664443 34444
No 240
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=97.91 E-value=1.5e-05 Score=69.80 Aligned_cols=90 Identities=22% Similarity=0.242 Sum_probs=70.6
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCC-Ccc-cCHH-HHH--HhCCeeeeccCccccccHH
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDG-FSV-VKLN-EVI--RTVDIVVTATGNKNVVTRE 181 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g-~~~-~~l~-e~~--~~aDvvi~~~~~~~~i~~~ 181 (258)
+|++++|.|.|.+|+.+++.++..|++ |+++++++++...+.+.| .+. .... ... ...|+++.+.+....+. +
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~-~ 175 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPSALE-T 175 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChHHHH-H
Confidence 789999999999999999999999998 999998888877777777 221 1111 111 24799999876655554 7
Q ss_pred HHhcCCCCcEEEecCCC
Q psy16115 182 HMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 182 ~l~~~k~g~~ivnvg~~ 198 (258)
.++.+++++.++++|..
T Consensus 176 ~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 176 ALRLLRDRGRVVLVGWY 192 (277)
T ss_pred HHHHhcCCcEEEEEecc
Confidence 78899999999999875
No 241
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=97.91 E-value=7.2e-06 Score=73.98 Aligned_cols=90 Identities=17% Similarity=0.261 Sum_probs=68.1
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcc-cC-----HH-H------HH--HhCCeeeec
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSV-VK-----LN-E------VI--RTVDIVVTA 171 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~-~~-----l~-e------~~--~~aDvvi~~ 171 (258)
.|.+|+|.|.|.+|..+++.++..|++ +++.+.++.+...+.+.|.+. .+ .. + .. ...|+++.+
T Consensus 161 ~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~vid~ 240 (341)
T cd08262 161 PGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWAAELARAGGPKPAVIFEC 240 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCCcCHHHHHHHHHHHhCCCCCCEEEEC
Confidence 789999999999999999999999996 777887787776666666531 11 10 1 11 137999999
Q ss_pred cCccccccHHHHhcCCCCcEEEecCCC
Q psy16115 172 TGNKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 172 ~~~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.+....+. +.++.++++++++++|..
T Consensus 241 ~g~~~~~~-~~~~~l~~~g~~v~~g~~ 266 (341)
T cd08262 241 VGAPGLIQ-QIIEGAPPGGRIVVVGVC 266 (341)
T ss_pred CCCHHHHH-HHHHHhccCCEEEEECCC
Confidence 87644554 678889999999999865
No 242
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.89 E-value=6.1e-05 Score=64.64 Aligned_cols=82 Identities=24% Similarity=0.265 Sum_probs=57.7
Q ss_pred cccCCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCCh----------hhHHHHHhCC-Cc------ccCHHHHH-HhC
Q psy16115 105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDP----------ICALQACMDG-FS------VVKLNEVI-RTV 165 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~----------~~~~~a~~~g-~~------~~~l~e~~-~~a 165 (258)
.++.|++|+|.|+|.+|+.+|+.|...|++ |.+.|.+. .......+.+ .. ..+.++++ ..+
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 357999999999999999999999999996 66688877 4443333222 11 11223332 268
Q ss_pred CeeeeccCccccccHHHHhcCC
Q psy16115 166 DIVVTATGNKNVVTREHMDKMK 187 (258)
Q Consensus 166 Dvvi~~~~~~~~i~~~~l~~~k 187 (258)
|+++.|+. .+.++.+....++
T Consensus 99 DVlipaA~-~~~i~~~~a~~l~ 119 (217)
T cd05211 99 DIFAPCAL-GNVIDLENAKKLK 119 (217)
T ss_pred cEEeeccc-cCccChhhHhhcC
Confidence 99999974 4477777777776
No 243
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.88 E-value=5.4e-05 Score=64.83 Aligned_cols=87 Identities=24% Similarity=0.267 Sum_probs=60.7
Q ss_pred EEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh--------CCC----cccCHHHHHHhCCeeeeccCcccc
Q psy16115 111 QVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACM--------DGF----SVVKLNEVIRTVDIVVTATGNKNV 177 (258)
Q Consensus 111 ~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~--------~g~----~~~~l~e~~~~aDvvi~~~~~~~~ 177 (258)
+|+||| .|.||..++..|...|.+|+++++++++...... .|. ...+..+.++++|+|++|......
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~~ 81 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDHV 81 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHHH
Confidence 699997 8999999999999999999999999877543222 122 123567788899999999644432
Q ss_pred cc--HHHHhcCCCCcEEEecCCC
Q psy16115 178 VT--REHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 178 i~--~~~l~~~k~g~~ivnvg~~ 198 (258)
-. ++.-..++ +.+++++.-+
T Consensus 82 ~~~l~~l~~~l~-~~vvI~~~ng 103 (219)
T TIGR01915 82 LKTLESLRDELS-GKLVISPVVP 103 (219)
T ss_pred HHHHHHHHHhcc-CCEEEEeccC
Confidence 11 12212233 4788888766
No 244
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.88 E-value=9.8e-05 Score=65.76 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=60.6
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------------cCHHHHHHhCCeeeeccCccccc
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------------VKLNEVIRTVDIVVTATGNKNVV 178 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------------~~l~e~~~~aDvvi~~~~~~~~i 178 (258)
+|+|+|+|.||..+|..|...|.+|+++++++++.+...+.|... .+..+. +.+|+|++|+.+...-
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~~~ 80 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQLP 80 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccccHH
Confidence 699999999999999999999999999999777655544445421 234443 7899999997544321
Q ss_pred c--HHHHhcCCCCcEEEecCCC
Q psy16115 179 T--REHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 179 ~--~~~l~~~k~g~~ivnvg~~ 198 (258)
. ++....+.++..++....|
T Consensus 81 ~~~~~l~~~l~~~~~iv~~~nG 102 (304)
T PRK06522 81 AALPSLAPLLGPDTPVLFLQNG 102 (304)
T ss_pred HHHHHHhhhcCCCCEEEEecCC
Confidence 1 1233344566777766555
No 245
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.88 E-value=8.2e-05 Score=74.43 Aligned_cols=126 Identities=19% Similarity=0.273 Sum_probs=78.9
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----------CCC-------------cc-cCHHHHHHh
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DGF-------------SV-VKLNEVIRT 164 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----------~g~-------------~~-~~l~e~~~~ 164 (258)
++|+|||+|.||..+|..+...|.+|+++|++++.+..+.. .|. .. .++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 68999999999999999999999999999999877543221 111 11 123 44678
Q ss_pred CCeeeeccC----ccccccHHHHhcCCCCcEEE-ecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEE
Q psy16115 165 VDIVVTATG----NKNVVTREHMDKMKNGCVVC-NMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDL 239 (258)
Q Consensus 165 aDvvi~~~~----~~~~i~~~~l~~~k~g~~iv-nvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l 239 (258)
||+||+|.. .+.-+-++.-+.++++++|. |++.-+...+.+.+...+ ++.+.+-+ .|...+ ..+.+
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~-r~~g~Hff-----~P~~~~---~lVEv 463 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPE-NFCGMHFF-----NPVHRM---PLVEV 463 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCc-cEEEEecC-----Cccccc---ceEEe
Confidence 999999942 22222234445678888885 444336666666554322 34444332 222222 45666
Q ss_pred ecCCCh
Q psy16115 240 FRKPKS 245 (258)
Q Consensus 240 ~~~~~~ 245 (258)
|.+++.
T Consensus 464 v~g~~T 469 (715)
T PRK11730 464 IRGEKT 469 (715)
T ss_pred eCCCCC
Confidence 666653
No 246
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.87 E-value=9.8e-05 Score=65.56 Aligned_cols=98 Identities=10% Similarity=0.028 Sum_probs=64.7
Q ss_pred CEEEEEcCchHHHHHHHHHHhCC----CEEEEEeCChhh-HHHHHh-C-CCc-ccCHHHHHHhCCeeeeccCcccccc--
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLG----CVIYITEIDPIC-ALQACM-D-GFS-VVKLNEVIRTVDIVVTATGNKNVVT-- 179 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G----~~Vi~~d~~~~~-~~~a~~-~-g~~-~~~l~e~~~~aDvvi~~~~~~~~i~-- 179 (258)
.+++|||+|.||..+++.+...| .+|+++++++.. ...... . +.. ..+..+.++++|+|++|.....+..
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~~vl 81 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVLPLL 81 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHHHHH
Confidence 37999999999999999999887 579999886533 222222 2 223 3467778889999999964332211
Q ss_pred HHHHhcCCCCcEEEecCCC-Chhhchhhh
Q psy16115 180 REHMDKMKNGCVVCNMGHS-NTEIDVNSL 207 (258)
Q Consensus 180 ~~~l~~~k~g~~ivnvg~~-~~~~~~~~l 207 (258)
.+....++++..++.+.-| +.+.+-+.+
T Consensus 82 ~~l~~~l~~~~~ivS~~aGi~~~~l~~~~ 110 (277)
T PRK06928 82 KDCAPVLTPDRHVVSIAAGVSLDDLLEIT 110 (277)
T ss_pred HHHHhhcCCCCEEEEECCCCCHHHHHHHc
Confidence 1222345677788888777 554444444
No 247
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.87 E-value=7.7e-05 Score=65.94 Aligned_cols=106 Identities=18% Similarity=0.276 Sum_probs=70.3
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC----C-CcccCHHHH-HHhCCeeeeccCcc--ccc
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD----G-FSVVKLNEV-IRTVDIVVTATGNK--NVV 178 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~----g-~~~~~l~e~-~~~aDvvi~~~~~~--~~i 178 (258)
..+++++|+|.|.+|+.++..+...|.+|+++++++.+.+...+. + ....++++. ..++|+||.|+... .-+
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 468999999999999999999999999999999998765432221 2 122334333 34789999997432 111
Q ss_pred cH--HHHhcCCCCcEEEecCCC-ChhhchhhhcCCCc
Q psy16115 179 TR--EHMDKMKNGCVVCNMGHS-NTEIDVNSLRTPDL 212 (258)
Q Consensus 179 ~~--~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i 212 (258)
+. -..+.++++.+++|+... ....+.+..+...+
T Consensus 195 ~~~~~~~~~l~~~~~v~D~~y~p~~T~ll~~A~~~G~ 231 (270)
T TIGR00507 195 DEPPVPAEKLKEGMVVYDMVYNPGETPFLAEAKSLGT 231 (270)
T ss_pred CCCCCCHHHcCCCCEEEEeccCCCCCHHHHHHHHCCC
Confidence 10 013457899999999776 33344454444333
No 248
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=97.86 E-value=4.4e-05 Score=69.00 Aligned_cols=90 Identities=22% Similarity=0.238 Sum_probs=70.1
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCccc------CHHHHHH------hCCeeeeccCc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV------KLNEVIR------TVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~------~aDvvi~~~~~ 174 (258)
.|++|+|.|.|.+|+.+++.++..|++ ++++++++.+.+.+.+.|++.. +..+.+. +.|+++.+++.
T Consensus 168 ~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~~~~~~d~il~~~g~ 247 (345)
T cd08287 168 PGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVRELTGGVGADAVLECVGT 247 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCCCCEEEECCCC
Confidence 789999999999999999999999995 8888888777666666776321 2222221 37999999876
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
...++ ..++.+++++.++.+|..
T Consensus 248 ~~~~~-~~~~~l~~~g~~v~~g~~ 270 (345)
T cd08287 248 QESME-QAIAIARPGGRVGYVGVP 270 (345)
T ss_pred HHHHH-HHHHhhccCCEEEEeccc
Confidence 66665 778899999999998865
No 249
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.86 E-value=0.00012 Score=63.29 Aligned_cols=100 Identities=13% Similarity=0.114 Sum_probs=65.5
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCC---CE-EEEEeCC-hhhHHHHH-hCCCc-ccCHHHHHHhCCeeeeccCccccccH
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLG---CV-IYITEID-PICALQAC-MDGFS-VVKLNEVIRTVDIVVTATGNKNVVTR 180 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G---~~-Vi~~d~~-~~~~~~a~-~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~~ 180 (258)
...+|+|||+|.+|..++..+...| .+ +++++++ +++..... ..+.. ..+.+++++++|+|++|+.... + .
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~-~-~ 80 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSA-H-E 80 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHH-H-H
Confidence 4578999999999999999998766 23 7777764 55544433 34554 3467888899999999964332 2 1
Q ss_pred HHHhcC---CCCcEEEecCCC-ChhhchhhhcC
Q psy16115 181 EHMDKM---KNGCVVCNMGHS-NTEIDVNSLRT 209 (258)
Q Consensus 181 ~~l~~~---k~g~~ivnvg~~-~~~~~~~~l~~ 209 (258)
+.++.+ .++.++|.+.-+ +.+.+-+.+..
T Consensus 81 ~v~~~l~~~~~~~~vis~~~gi~~~~l~~~~~~ 113 (245)
T PRK07634 81 ELLAELSPLLSNQLVVTVAAGIGPSYLEERLPK 113 (245)
T ss_pred HHHHHHHhhccCCEEEEECCCCCHHHHHHHcCC
Confidence 333322 135688888777 55554444443
No 250
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.84 E-value=0.00011 Score=73.62 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=70.4
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----------CCC-------------cc-cCHHHHHHh
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DGF-------------SV-VKLNEVIRT 164 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----------~g~-------------~~-~~l~e~~~~ 164 (258)
++|+|||+|.||..+|..+...|.+|+++|++++.++.+.+ .|. +. .++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 68999999999999999999999999999999877554321 111 00 123 34678
Q ss_pred CCeeeeccCc----cccccHHHHhcCCCCcEEE-ecCCCChhhchhhhcCCCceeeeec
Q psy16115 165 VDIVVTATGN----KNVVTREHMDKMKNGCVVC-NMGHSNTEIDVNSLRTPDLTWEKVR 218 (258)
Q Consensus 165 aDvvi~~~~~----~~~i~~~~l~~~k~g~~iv-nvg~~~~~~~~~~l~~~~i~~~~~~ 218 (258)
+|+||++.-- +.-+-++.-+.+++++++. |+|.-+...+...+...+ ++.+.+
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~-r~ig~H 450 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPE-NFCGMH 450 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcc-cEEEEe
Confidence 9999999422 2222234445678998885 444436666655554322 344443
No 251
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=97.84 E-value=8.3e-05 Score=66.87 Aligned_cols=89 Identities=18% Similarity=0.153 Sum_probs=66.9
Q ss_pred HHHHHHHHHhCCCEEEEEeCChhhHH-----HHHhCCCccc-CHHHHHHhCCeeeeccCcccccc---HHHHhcCCCCcE
Q psy16115 121 GKGCCQSLKGLGCVIYITEIDPICAL-----QACMDGFSVV-KLNEVIRTVDIVVTATGNKNVVT---REHMDKMKNGCV 191 (258)
Q Consensus 121 G~~~a~~l~~~G~~Vi~~d~~~~~~~-----~a~~~g~~~~-~l~e~~~~aDvvi~~~~~~~~i~---~~~l~~~k~g~~ 191 (258)
|..+|+.|...|..|++||+++.+.. ...+.|+... +..++++++|+|++|..+...+. ...++.+++|.+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaI 111 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAV 111 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCE
Confidence 88999999999999999999876432 2445677644 68899999999999964443221 246778899999
Q ss_pred EEecCCCChhhchhhhcC
Q psy16115 192 VCNMGHSNTEIDVNSLRT 209 (258)
Q Consensus 192 ivnvg~~~~~~~~~~l~~ 209 (258)
+||++..+.+.....++.
T Consensus 112 VID~STIsP~t~~~~~e~ 129 (341)
T TIGR01724 112 ICNTCTVSPVVLYYSLEK 129 (341)
T ss_pred EEECCCCCHHHHHHHHHH
Confidence 999998876666555443
No 252
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=97.83 E-value=0.00012 Score=66.01 Aligned_cols=87 Identities=20% Similarity=0.214 Sum_probs=68.2
Q ss_pred CCEEEEEcC-chHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHh-CCCcc------cCHHHHHH-----hCCeeeeccCc
Q psy16115 109 GKQVVLCGY-GEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-DGFSV------VKLNEVIR-----TVDIVVTATGN 174 (258)
Q Consensus 109 g~~V~IiG~-G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~-~g~~~------~~l~e~~~-----~aDvvi~~~~~ 174 (258)
|++|+|.|. |.+|+.+++.++.+|+ +|++++.++++.+.+.+ .|++. .++.+.++ +.|+++.+.+.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~ 234 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG 234 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence 489999998 9999999999999999 79999888877666554 67642 13333332 47999999876
Q ss_pred cccccHHHHhcCCCCcEEEecCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGH 197 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~ 197 (258)
.. + .+.++.++++++++.+|.
T Consensus 235 ~~-~-~~~~~~l~~~G~iv~~G~ 255 (345)
T cd08293 235 EI-S-DTVISQMNENSHIILCGQ 255 (345)
T ss_pred HH-H-HHHHHHhccCCEEEEEee
Confidence 54 4 478999999999999884
No 253
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=97.82 E-value=0.00011 Score=66.40 Aligned_cols=89 Identities=19% Similarity=0.199 Sum_probs=70.2
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CCCcc-c------CHHHHHH-----hCCeeeeccC
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSV-V------KLNEVIR-----TVDIVVTATG 173 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~~-~------~l~e~~~-----~aDvvi~~~~ 173 (258)
.|++|+|.|. |.+|+.+++.++.+|++|++.++++++...+++ .|++. . ++.+.+. +.|+++.+.+
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g 230 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG 230 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCC
Confidence 7999999998 999999999999999999998888887766666 66531 1 2333232 4799999987
Q ss_pred ccccccHHHHhcCCCCcEEEecCCC
Q psy16115 174 NKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 174 ~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
. ..+. +.++.++++++++.+|..
T Consensus 231 ~-~~~~-~~~~~l~~~G~iv~~G~~ 253 (338)
T cd08295 231 G-KMLD-AVLLNMNLHGRIAACGMI 253 (338)
T ss_pred H-HHHH-HHHHHhccCcEEEEeccc
Confidence 6 3453 789999999999998864
No 254
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.81 E-value=7.9e-05 Score=67.75 Aligned_cols=87 Identities=15% Similarity=0.213 Sum_probs=60.4
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-----------------cCHHHHHHhCCeeeecc
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-----------------VKLNEVIRTVDIVVTAT 172 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-----------------~~l~e~~~~aDvvi~~~ 172 (258)
.+|+|||+|.||..+|..|...|.+|+++|+++.. +...+.|... .+..+.++.+|+|++|+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIG-DELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHH-HHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEe
Confidence 47999999999999999999999999999987542 3333333321 11224567899999996
Q ss_pred Cccc---cccHHHHhcCCCCcEEEecCCC
Q psy16115 173 GNKN---VVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 173 ~~~~---~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.+.. ++ .+....++++.+++.+..+
T Consensus 82 k~~~~~~~~-~~l~~~~~~~~iii~~~nG 109 (341)
T PRK08229 82 KSAATADAA-AALAGHARPGAVVVSFQNG 109 (341)
T ss_pred cCcchHHHH-HHHHhhCCCCCEEEEeCCC
Confidence 5443 22 2334456788888877555
No 255
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.81 E-value=4.8e-05 Score=67.20 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=58.1
Q ss_pred EEEEEcCchHHHHHHHHHHhC--CCE-EEEEeCChhhHHHHH-hCCCc-ccCHHHHHHhCCeeeeccCccccccHHHHhc
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGL--GCV-IYITEIDPICALQAC-MDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMDK 185 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~--G~~-Vi~~d~~~~~~~~a~-~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~ 185 (258)
+++|||+|.||+.+++.+... +.+ +.++|+++.+..... ..+.. +.++++++.++|+|++|+..... .....+.
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~-~~~~~~a 81 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAV-EEVVPKS 81 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHH-HHHHHHH
Confidence 799999999999999998875 466 567899987765433 33433 45788888889999999743332 2233334
Q ss_pred CCCCcEEEecCC
Q psy16115 186 MKNGCVVCNMGH 197 (258)
Q Consensus 186 ~k~g~~ivnvg~ 197 (258)
++.|.-++..+.
T Consensus 82 l~~Gk~Vvv~s~ 93 (265)
T PRK13304 82 LENGKDVIIMSV 93 (265)
T ss_pred HHcCCCEEEEch
Confidence 454544444443
No 256
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=97.80 E-value=5e-05 Score=69.06 Aligned_cols=89 Identities=22% Similarity=0.297 Sum_probs=67.9
Q ss_pred CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHHH------hCCeeeeccCc
Q psy16115 108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVIR------TVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~------~aDvvi~~~~~ 174 (258)
.|++|+|.| .|-+|....+.+|.+|+++++...++++.+.+++.|++.. ++.+.++ +.|+|+.+.+.
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG~ 221 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGG 221 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCCH
Confidence 599999999 8889999999999999776665556665557778887532 2444443 47999999865
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
...- +.++.+++++.++.+|..
T Consensus 222 ~~~~--~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 222 DTFA--ASLAALAPGGRLVSIGAL 243 (326)
T ss_pred HHHH--HHHHHhccCCEEEEEecC
Confidence 5433 578889999999998874
No 257
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.80 E-value=0.0002 Score=65.24 Aligned_cols=101 Identities=20% Similarity=0.240 Sum_probs=71.2
Q ss_pred CCCEEEEEcCchHHHHHHHHHHh-CCC-EEEEEeCChhhHHHHHh-----CCCc---ccCHHHHHHhCCeeeeccCccc-
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQACM-----DGFS---VVKLNEVIRTVDIVVTATGNKN- 176 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~-~G~-~Vi~~d~~~~~~~~a~~-----~g~~---~~~l~e~~~~aDvvi~~~~~~~- 176 (258)
..++++|+|+|.+|+..+..+.. .+. +|.+++|++++.+...+ .+.. ..++++++.++|+|+.|+....
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~p 210 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEEP 210 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCCc
Confidence 45899999999999999888875 565 69999999887654322 2443 3467899999999999975544
Q ss_pred cccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCC
Q psy16115 177 VVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPD 211 (258)
Q Consensus 177 ~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~ 211 (258)
++.. +++++|..+..+|.. ..|.+.+.+....
T Consensus 211 ~i~~---~~l~~g~~v~~vg~d~~~~rEld~~~l~~a~ 245 (330)
T PRK08291 211 ILKA---EWLHPGLHVTAMGSDAEHKNEIAPAVFAAAD 245 (330)
T ss_pred EecH---HHcCCCceEEeeCCCCCCcccCCHHHHhhCC
Confidence 5543 346888888877765 2344434444443
No 258
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.79 E-value=0.00011 Score=73.78 Aligned_cols=126 Identities=13% Similarity=0.184 Sum_probs=78.7
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----------CC-C------------cc-cCHHHHHHh
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DG-F------------SV-VKLNEVIRT 164 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----------~g-~------------~~-~~l~e~~~~ 164 (258)
++|+|||+|.||..+|..+...|.+|+++|++++.+..+.+ .| . .. .++ +.+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhcc
Confidence 68999999999999999999999999999999877554322 11 1 01 123 34678
Q ss_pred CCeeeeccCcc----ccccHHHHhcCCCCcEEE-ecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEE
Q psy16115 165 VDIVVTATGNK----NVVTREHMDKMKNGCVVC-NMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDL 239 (258)
Q Consensus 165 aDvvi~~~~~~----~~i~~~~l~~~k~g~~iv-nvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l 239 (258)
||+||++.--. .-+-++.-+.+++++++. |+|.-+...+...+...+ ++.+.+-+. |...+ ..+.+
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~-r~ig~Hff~-----P~~~m---~LvEv 485 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPE-KVIGMHYFS-----PVDKM---QLLEI 485 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcc-ceEEEeccC-----CcccC---ceEEE
Confidence 99999994222 222224445678998884 555446666666554432 344443332 22222 45555
Q ss_pred ecCCCh
Q psy16115 240 FRKPKS 245 (258)
Q Consensus 240 ~~~~~~ 245 (258)
|.+++.
T Consensus 486 v~g~~T 491 (737)
T TIGR02441 486 ITHDGT 491 (737)
T ss_pred eCCCCC
Confidence 665554
No 259
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=97.78 E-value=4.6e-05 Score=68.33 Aligned_cols=90 Identities=16% Similarity=0.129 Sum_probs=69.5
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHH-HHhCCeeeeccCccccccHHHHhc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEV-IRTVDIVVTATGNKNVVTREHMDK 185 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~-~~~aDvvi~~~~~~~~i~~~~l~~ 185 (258)
.|.+++|.|.|.+|+.+++.++..|.+|++.+.++.+...+.+.|++. .+..+. -+..|+++.+++....+. +.++.
T Consensus 167 ~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vD~vi~~~~~~~~~~-~~~~~ 245 (329)
T cd08298 167 PGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFAPVGALVP-AALRA 245 (329)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCccCCCcccEEEEcCCcHHHHH-HHHHH
Confidence 789999999999999999999999999999888887777676777642 121111 124699988865555554 78999
Q ss_pred CCCCcEEEecCCC
Q psy16115 186 MKNGCVVCNMGHS 198 (258)
Q Consensus 186 ~k~g~~ivnvg~~ 198 (258)
++++++++..|..
T Consensus 246 l~~~G~~v~~g~~ 258 (329)
T cd08298 246 VKKGGRVVLAGIH 258 (329)
T ss_pred hhcCCEEEEEcCC
Confidence 9999999988743
No 260
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=97.78 E-value=0.00016 Score=65.26 Aligned_cols=90 Identities=24% Similarity=0.288 Sum_probs=67.8
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~ 174 (258)
+|++|+|.|.|.+|..+++.++..|. +|++++.++.+...+.+.|.+. .++.+.+. ..|+++.+.+.
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~g~ 246 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAVGF 246 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEccCC
Confidence 68999999999999999999999996 7888888777766656665431 12222221 47999998765
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
...+. +.++.++++++++.+|..
T Consensus 247 ~~~~~-~~~~~l~~~G~~v~~g~~ 269 (347)
T cd05278 247 EETFE-QAVKVVRPGGTIANVGVY 269 (347)
T ss_pred HHHHH-HHHHHhhcCCEEEEEcCC
Confidence 44554 778899999999998854
No 261
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=97.78 E-value=9.3e-05 Score=66.58 Aligned_cols=90 Identities=18% Similarity=0.239 Sum_probs=69.0
Q ss_pred CCCEEEEEcCchHHHHHHHHHHh-CCCEEEEEeCChhhHHHHHhCCCccc-------CHHHHH----HhCCeeeeccCcc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKG-LGCVIYITEIDPICALQACMDGFSVV-------KLNEVI----RTVDIVVTATGNK 175 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~-~G~~Vi~~d~~~~~~~~a~~~g~~~~-------~l~e~~----~~aDvvi~~~~~~ 175 (258)
.|.+|+|.|.|.+|..+++.++. +|++|++.+.++++.+.+.+.|++.. +..+.+ .+.|+++.++...
T Consensus 162 ~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~~~~~~ 241 (338)
T PRK09422 162 PGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGAHAAVVTAVAK 241 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhcCCCcEEEEeCCCH
Confidence 78999999999999999999998 59999999999888777777776321 112222 2367666666555
Q ss_pred ccccHHHHhcCCCCcEEEecCCC
Q psy16115 176 NVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 176 ~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
..+. +.++.+++++.++.+|..
T Consensus 242 ~~~~-~~~~~l~~~G~~v~~g~~ 263 (338)
T PRK09422 242 AAFN-QAVDAVRAGGRVVAVGLP 263 (338)
T ss_pred HHHH-HHHHhccCCCEEEEEeeC
Confidence 5664 789999999999999865
No 262
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.77 E-value=5.4e-05 Score=64.24 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=59.7
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhH-HHHHhCC-Cccc--C-HHHHHHhCCeeeeccCccccccH
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA-LQACMDG-FSVV--K-LNEVIRTVDIVVTATGNKNVVTR 180 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~-~~a~~~g-~~~~--~-l~e~~~~aDvvi~~~~~~~~i~~ 180 (258)
++.|++|+|||.|.+|...++.|...|++|++++++..+. ......+ +... . .++.+.++|+||.||+.+. +|.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e-lN~ 85 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR-VNE 85 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH-HHH
Confidence 4799999999999999999999999999999998765332 2222222 2211 1 1344678999999986554 443
Q ss_pred HHHhcCCCCcEEEecC
Q psy16115 181 EHMDKMKNGCVVCNMG 196 (258)
Q Consensus 181 ~~l~~~k~g~~ivnvg 196 (258)
...+..+.+ .++|+.
T Consensus 86 ~i~~~a~~~-~lvn~~ 100 (202)
T PRK06718 86 QVKEDLPEN-ALFNVI 100 (202)
T ss_pred HHHHHHHhC-CcEEEC
Confidence 443334444 567765
No 263
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.77 E-value=0.00015 Score=72.58 Aligned_cols=126 Identities=15% Similarity=0.158 Sum_probs=78.5
Q ss_pred CEEEEEcCchHHHHHHHHHH-hCCCEEEEEeCChhhHHHHHh-----------CCC-------------cc-cCHHHHHH
Q psy16115 110 KQVVLCGYGEVGKGCCQSLK-GLGCVIYITEIDPICALQACM-----------DGF-------------SV-VKLNEVIR 163 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~-~~G~~Vi~~d~~~~~~~~a~~-----------~g~-------------~~-~~l~e~~~ 163 (258)
++|+|||+|.||..+|..+. ..|.+|+++|++++.+..+.. .|. .. .++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 78999999999999999988 789999999999876544321 111 00 123 4567
Q ss_pred hCCeeeeccCcc----ccccHHHHhcCCCCcEEEecCCC-ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeE
Q psy16115 164 TVDIVVTATGNK----NVVTREHMDKMKNGCVVCNMGHS-NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVID 238 (258)
Q Consensus 164 ~aDvvi~~~~~~----~~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (258)
++|+||+|..-. .-+-++.-+.+++++++..-..+ +...+.+.+...+ +..+.+-+. |...+ +.+.
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~-r~ig~Hff~-----P~~~~---~lVE 459 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPE-QVIGLHYFS-----PVEKM---PLVE 459 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCccc-ceEEEecCC-----ccccC---ceEE
Confidence 899999994222 22222444567899998644444 6665555554332 344443332 22222 4666
Q ss_pred EecCCCh
Q psy16115 239 LFRKPKS 245 (258)
Q Consensus 239 l~~~~~~ 245 (258)
+|.+++.
T Consensus 460 vv~g~~T 466 (708)
T PRK11154 460 VIPHAKT 466 (708)
T ss_pred EECCCCC
Confidence 6666654
No 264
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=97.77 E-value=0.00011 Score=66.15 Aligned_cols=91 Identities=20% Similarity=0.233 Sum_probs=70.2
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCC-CEEEEEeCChhhHHHHHhCCCccc-C----H----HHHHH--hCCeeeeccCcc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDGFSVV-K----L----NEVIR--TVDIVVTATGNK 175 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~a~~~g~~~~-~----l----~e~~~--~aDvvi~~~~~~ 175 (258)
.|++|+|.|.|.+|+.+++.++..| .+|++++.++.+.....+.|++.. + . .+... ..|+++.+++..
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~g~~ 246 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVIDFVGSD 246 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcCCCH
Confidence 6899999999999999999999999 799988888877666666665321 1 1 12222 379999998765
Q ss_pred ccccHHHHhcCCCCcEEEecCCCC
Q psy16115 176 NVVTREHMDKMKNGCVVCNMGHSN 199 (258)
Q Consensus 176 ~~i~~~~l~~~k~g~~ivnvg~~~ 199 (258)
..+. +.++.+++++.++.+|..+
T Consensus 247 ~~~~-~~~~~l~~~g~~i~~g~~~ 269 (340)
T cd05284 247 ETLA-LAAKLLAKGGRYVIVGYGG 269 (340)
T ss_pred HHHH-HHHHHhhcCCEEEEEcCCC
Confidence 5554 7788999999999998663
No 265
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=97.77 E-value=0.00014 Score=65.07 Aligned_cols=90 Identities=19% Similarity=0.258 Sum_probs=70.2
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHH-----HhCCeeeeccCccc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVI-----RTVDIVVTATGNKN 176 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~-----~~aDvvi~~~~~~~ 176 (258)
.|.+|+|.|.|.+|+.+++.++..|.+|++.+.++.+...+.+.|.+.. ...+.+ +..|+++.+.+...
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g~~~ 244 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGTQP 244 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCCCHH
Confidence 6889999999999999999999999999999988887766666665321 222211 23799999987665
Q ss_pred cccHHHHhcCCCCcEEEecCCC
Q psy16115 177 VVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 177 ~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.+. +.++.+++++.++.+|..
T Consensus 245 ~~~-~~~~~l~~~G~~v~~g~~ 265 (338)
T cd08254 245 TFE-DAQKAVKPGGRIVVVGLG 265 (338)
T ss_pred HHH-HHHHHhhcCCEEEEECCC
Confidence 664 788999999999999865
No 266
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.77 E-value=0.00016 Score=72.24 Aligned_cols=126 Identities=14% Similarity=0.160 Sum_probs=77.4
Q ss_pred CEEEEEcCchHHHHHHHHHH-hCCCEEEEEeCChhhHHHHHh-----------CCC-------------cc-cCHHHHHH
Q psy16115 110 KQVVLCGYGEVGKGCCQSLK-GLGCVIYITEIDPICALQACM-----------DGF-------------SV-VKLNEVIR 163 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~-~~G~~Vi~~d~~~~~~~~a~~-----------~g~-------------~~-~~l~e~~~ 163 (258)
++|+|||+|.||..+|..+. ..|.+|+++|++++.+..+.. .+. .. .++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 68999999999999999987 589999999999876443321 111 11 123 4567
Q ss_pred hCCeeeeccCcc----ccccHHHHhcCCCCcEEE-ecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeE
Q psy16115 164 TVDIVVTATGNK----NVVTREHMDKMKNGCVVC-NMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVID 238 (258)
Q Consensus 164 ~aDvvi~~~~~~----~~i~~~~l~~~k~g~~iv-nvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (258)
+||+|++|..-. .-+-++.-+.+++++++. |+|.-+...+.+.+...+ ++.+.+.+...+. + ..+.
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~-r~~g~HffnP~~~-----~---~lVE 454 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPE-NVIGLHYFSPVEK-----M---PLVE 454 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcc-cEEEEecCCcccc-----C---ceEE
Confidence 899999994222 222224445678888885 444436666655554332 3445543332222 1 4566
Q ss_pred EecCCCh
Q psy16115 239 LFRKPKS 245 (258)
Q Consensus 239 l~~~~~~ 245 (258)
+|.+++.
T Consensus 455 vv~g~~T 461 (699)
T TIGR02440 455 VIPHAGT 461 (699)
T ss_pred EeCCCCC
Confidence 6666554
No 267
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.76 E-value=0.00016 Score=66.34 Aligned_cols=87 Identities=24% Similarity=0.403 Sum_probs=65.6
Q ss_pred CCEEEEEcCchHHHHHHHHHHh-CCC-EEEEEeCChhhHHHHH----hCCCc---ccCHHHHHHhCCeeeeccCcc---c
Q psy16115 109 GKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQAC----MDGFS---VVKLNEVIRTVDIVVTATGNK---N 176 (258)
Q Consensus 109 g~~V~IiG~G~IG~~~a~~l~~-~G~-~Vi~~d~~~~~~~~a~----~~g~~---~~~l~e~~~~aDvvi~~~~~~---~ 176 (258)
-++++|||+|..++..++.+.. +.. +|.+|++++++.+... +.++. ..+.++++++||+|++||.+. .
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~~P 208 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTNAT 208 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCCCc
Confidence 5899999999999988876654 455 5999999998754321 12332 347899999999999997543 4
Q ss_pred cccHHHHhcCCCCcEEEecCCC
Q psy16115 177 VVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 177 ~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
++.. +++|+|+.+.-+|..
T Consensus 209 vl~~---~~lkpG~hV~aIGs~ 227 (346)
T PRK07589 209 ILTD---DMVEPGMHINAVGGD 227 (346)
T ss_pred eecH---HHcCCCcEEEecCCC
Confidence 5653 467999999988876
No 268
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=97.76 E-value=6.8e-05 Score=66.25 Aligned_cols=89 Identities=25% Similarity=0.274 Sum_probs=70.1
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc--CHHHHH-HhCCeeeeccCccccccHHHH
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--KLNEVI-RTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~--~l~e~~-~~aDvvi~~~~~~~~i~~~~l 183 (258)
.|.+|.|.|. |.+|+.+++.++.+|++|+..+.++++...+++.|+... ..++.. ...|+++.+.+.. .+ .+.+
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vl~~~g~~-~~-~~~~ 209 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSELSGAPVDLVVDSVGGP-QL-ARAL 209 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEeccccccCCCceEEEECCCcH-HH-HHHH
Confidence 6899999999 899999999999999999999888887777767776321 111111 2579999998765 34 3789
Q ss_pred hcCCCCcEEEecCCC
Q psy16115 184 DKMKNGCVVCNMGHS 198 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~ 198 (258)
+.++++++++.+|..
T Consensus 210 ~~l~~~G~~v~~g~~ 224 (305)
T cd08270 210 ELLAPGGTVVSVGSS 224 (305)
T ss_pred HHhcCCCEEEEEecc
Confidence 999999999999865
No 269
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=97.76 E-value=0.00014 Score=64.73 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=66.7
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHH----HH--hCCeeeeccCc
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEV----IR--TVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~----~~--~aDvvi~~~~~ 174 (258)
+|.+|+|.|. |.+|+.+++.++.+|++++++..+.++.....+.|.+.. ++.+. .. ..|+++.+.+.
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~ 218 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSVGG 218 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECCCC
Confidence 7899999986 889999999999999998887666666555555565321 12222 21 48999999876
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
. .+ .+.++.++++++++.+|..
T Consensus 219 ~-~~-~~~~~~l~~~g~~v~~g~~ 240 (324)
T cd08292 219 K-LA-GELLSLLGEGGTLVSFGSM 240 (324)
T ss_pred h-hH-HHHHHhhcCCcEEEEEecC
Confidence 4 44 3789999999999999854
No 270
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=97.75 E-value=0.00019 Score=66.70 Aligned_cols=89 Identities=20% Similarity=0.208 Sum_probs=68.4
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cC---------------------------H
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VK---------------------------L 158 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~---------------------------l 158 (258)
.|.+|+|.|. |.+|+.+++.++.+|+++++.+.++.+...+++.|.+. .+ +
T Consensus 189 ~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (398)
T TIGR01751 189 PGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRF 268 (398)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcchhH
Confidence 6899999998 99999999999999999888888877776666666421 11 1
Q ss_pred ----HHHH--HhCCeeeeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115 159 ----NEVI--RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 159 ----~e~~--~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.++. ++.|+++.|.+. ..+. ..++.++++++++++|..
T Consensus 269 ~~~~~~~~~~~g~d~vld~~g~-~~~~-~~~~~l~~~G~~v~~g~~ 312 (398)
T TIGR01751 269 GKRIRELTGGEDPDIVFEHPGR-ATFP-TSVFVCRRGGMVVICGGT 312 (398)
T ss_pred HHHHHHHcCCCCceEEEECCcH-HHHH-HHHHhhccCCEEEEEccc
Confidence 1111 248999999875 4454 688899999999999864
No 271
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=97.74 E-value=8.3e-05 Score=66.67 Aligned_cols=90 Identities=16% Similarity=0.188 Sum_probs=69.2
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-C-----HH-HHHHhCCeeeeccCccccccH
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-K-----LN-EVIRTVDIVVTATGNKNVVTR 180 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~-----l~-e~~~~aDvvi~~~~~~~~i~~ 180 (258)
.|.+|+|.|.|.+|+.+++.++..|.+|+++++++.+.....+.|.+.. . .. ......|+++.+.+....+.
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~- 240 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGAAAE- 240 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHHHHH-
Confidence 6899999999999999999999999999999988887766655564311 1 11 11135799999876655554
Q ss_pred HHHhcCCCCcEEEecCCC
Q psy16115 181 EHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 181 ~~l~~~k~g~~ivnvg~~ 198 (258)
+.++.+++++.++++|..
T Consensus 241 ~~~~~l~~~G~~i~~~~~ 258 (330)
T cd08245 241 AALGGLRRGGRIVLVGLP 258 (330)
T ss_pred HHHHhcccCCEEEEECCC
Confidence 788999999999998854
No 272
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=97.74 E-value=9e-05 Score=67.00 Aligned_cols=90 Identities=19% Similarity=0.294 Sum_probs=69.6
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcc-c-----CHHHHH------HhCCeeeeccCc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSV-V-----KLNEVI------RTVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~-~-----~l~e~~------~~aDvvi~~~~~ 174 (258)
.|++++|.|.|.+|..+++.++..|++ |++++.++.+...+.+.|.+. . ++.+.+ ++.|+++.+.+.
T Consensus 161 ~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~g~ 240 (340)
T TIGR00692 161 SGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMSGA 240 (340)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECCCC
Confidence 789999999999999999999999997 888888877776666666531 1 222222 247999998776
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
...+. +.++.+++++.++.+|..
T Consensus 241 ~~~~~-~~~~~l~~~g~~v~~g~~ 263 (340)
T TIGR00692 241 PKALE-QGLQAVTPGGRVSLLGLP 263 (340)
T ss_pred HHHHH-HHHHhhcCCCEEEEEccC
Confidence 55564 778889999999999864
No 273
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.73 E-value=0.00019 Score=65.29 Aligned_cols=98 Identities=24% Similarity=0.304 Sum_probs=72.0
Q ss_pred CCEEEEEcCchHHHHHHHHHHh-CCC-EEEEEeCChhhHHHHH----hC-CC---cccCHHHHHHhCCeeeeccCcc-cc
Q psy16115 109 GKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQAC----MD-GF---SVVKLNEVIRTVDIVVTATGNK-NV 177 (258)
Q Consensus 109 g~~V~IiG~G~IG~~~a~~l~~-~G~-~Vi~~d~~~~~~~~a~----~~-g~---~~~~l~e~~~~aDvvi~~~~~~-~~ 177 (258)
-++++|||+|..++..++.++. ++. +|.+|+++++..+... +. +. ...+.++++++||+|+.||.+. .+
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~Pi 209 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTEPV 209 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCCCe
Confidence 5799999999999999999986 455 6999999998765432 12 22 2347899999999999997544 45
Q ss_pred ccHHHHhcCCCCcEEEecCCC---ChhhchhhhcC
Q psy16115 178 VTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRT 209 (258)
Q Consensus 178 i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~ 209 (258)
+.. +++++|..|..+|.. ..|.+.+.+..
T Consensus 210 l~~---~~l~~G~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 210 LKA---EWLKPGTHINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred ecH---hhcCCCcEEEecCCCCcccccCCHHHHHh
Confidence 553 357899999999964 34444444433
No 274
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.73 E-value=0.00013 Score=65.05 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=64.1
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc--------------cCHHHHHHhCCeeeeccCccc
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--------------VKLNEVIRTVDIVVTATGNKN 176 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~--------------~~l~e~~~~aDvvi~~~~~~~ 176 (258)
+|+|+|+|.||..+|..|...|.+|+++++ +++.+...+.|... .+.++..+.+|++++|+.+..
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~~ 80 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAYQ 80 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecccC
Confidence 699999999999999999999999999998 65554444444321 134444577999999965443
Q ss_pred ---cccHHHHhcCCCCcEEEecCCC--ChhhchhhhcC
Q psy16115 177 ---VVTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRT 209 (258)
Q Consensus 177 ---~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~ 209 (258)
++ .+.-..++++..++.+.-| ..+...+.+..
T Consensus 81 ~~~~~-~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~ 117 (305)
T PRK12921 81 LDAAI-PDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR 117 (305)
T ss_pred HHHHH-HHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc
Confidence 22 1233345667778766444 34444444443
No 275
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.73 E-value=0.00023 Score=62.37 Aligned_cols=108 Identities=18% Similarity=0.260 Sum_probs=68.1
Q ss_pred CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEE-EEeC----------ChhhHH---HHH-hC------------CCccc
Q psy16115 104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEI----------DPICAL---QAC-MD------------GFSVV 156 (258)
Q Consensus 104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi-~~d~----------~~~~~~---~a~-~~------------g~~~~ 156 (258)
+.+++|+||+|.|+|.+|+.+|+.|...|++|+ +.|. +...+. ... +. +.+..
T Consensus 33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~ 112 (254)
T cd05313 33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF 112 (254)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence 456899999999999999999999999999988 5552 111110 000 01 13334
Q ss_pred CHHHHHH-hCCeeeeccCccccccHHHHhcCC-CCcEEEecCC-CChhh-chhhhcCCCc
Q psy16115 157 KLNEVIR-TVDIVVTATGNKNVVTREHMDKMK-NGCVVCNMGH-SNTEI-DVNSLRTPDL 212 (258)
Q Consensus 157 ~l~e~~~-~aDvvi~~~~~~~~i~~~~l~~~k-~g~~ivnvg~-~~~~~-~~~~l~~~~i 212 (258)
+.++++. .|||++-|. ..+.|+.+..+.++ +++.+|--|- ++... -.+.|..+.+
T Consensus 113 ~~~~~~~~~~DIliPcA-l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~~a~~~L~~rGI 171 (254)
T cd05313 113 EGKKPWEVPCDIAFPCA-TQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAIEVFRQAGV 171 (254)
T ss_pred CCcchhcCCCcEEEecc-ccccCCHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHCCc
Confidence 4555544 699999996 66788888877773 3455544333 32222 2235555555
No 276
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.73 E-value=0.00017 Score=65.63 Aligned_cols=82 Identities=24% Similarity=0.284 Sum_probs=59.1
Q ss_pred EEEEcCchHHHHHHHHHHhC-CCEEEE-EeCChhhHHH-HHhCCCcc-------------------cCHHHHHHhCCeee
Q psy16115 112 VVLCGYGEVGKGCCQSLKGL-GCVIYI-TEIDPICALQ-ACMDGFSV-------------------VKLNEVIRTVDIVV 169 (258)
Q Consensus 112 V~IiG~G~IG~~~a~~l~~~-G~~Vi~-~d~~~~~~~~-a~~~g~~~-------------------~~l~e~~~~aDvvi 169 (258)
|+|+|+|.||+.+++.+... ++++++ .|.++++... +...|++. -++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 68999999999999998754 577554 6766664322 22233221 14788888999999
Q ss_pred eccC-ccccccHHHHhcCCCCcEEE
Q psy16115 170 TATG-NKNVVTREHMDKMKNGCVVC 193 (258)
Q Consensus 170 ~~~~-~~~~i~~~~l~~~k~g~~iv 193 (258)
.|++ ..+..+++.+..++++.+++
T Consensus 81 e~Tp~~~~~~na~~~~~~GakaVl~ 105 (333)
T TIGR01546 81 DATPGGIGAKNKPLYEKAGVKAIFQ 105 (333)
T ss_pred ECCCCCCChhhHHHHHhCCcCEEEE
Confidence 9974 55788888888888877664
No 277
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.72 E-value=0.00024 Score=63.37 Aligned_cols=103 Identities=10% Similarity=0.071 Sum_probs=68.0
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHh-CC----Cccc----CHHHHHHhCCeeeeccCcc
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-DG----FSVV----KLNEVIRTVDIVVTATGNK 175 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~-~g----~~~~----~l~e~~~~aDvvi~~~~~~ 175 (258)
++.|++++|+|+|-+|++++..|...|+ +|++++|++++.+...+ .+ +... ++.+.+.++|+||.|+...
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 4689999999999999999999999998 69999999887654322 11 1111 1224456799999997544
Q ss_pred ccccHHHHh---------cCCCCcEEEecCCC-Chhhchhhhc
Q psy16115 176 NVVTREHMD---------KMKNGCVVCNMGHS-NTEIDVNSLR 208 (258)
Q Consensus 176 ~~i~~~~l~---------~~k~g~~ivnvg~~-~~~~~~~~l~ 208 (258)
..++...+. .++++..++|+--. .+..++..-+
T Consensus 202 ~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~ 244 (282)
T TIGR01809 202 VPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPTPLVAIVS 244 (282)
T ss_pred CCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCCHHHHHHH
Confidence 444433322 13456778887654 3444444333
No 278
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.72 E-value=0.0002 Score=63.89 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=72.2
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHh-CC-----Ccc---cCHHHHHHhCCeeeecc--C
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-DG-----FSV---VKLNEVIRTVDIVVTAT--G 173 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~-~g-----~~~---~~l~e~~~~aDvvi~~~--~ 173 (258)
.+.+++|+|+|+|.+|++++..|...|+ +|+++||+..+.+...+ .+ ... .++.+.+.++|+||.|+ |
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 4688999999999999999999999998 69999999887654322 11 111 23445667899999995 3
Q ss_pred cc---c-cccHHHHhcCCCCcEEEecCCC-Chhhchh-hhcCCCceeee
Q psy16115 174 NK---N-VVTREHMDKMKNGCVVCNMGHS-NTEIDVN-SLRTPDLTWEK 216 (258)
Q Consensus 174 ~~---~-~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~-~l~~~~i~~~~ 216 (258)
.. . .++ .+.++++.++.|+--. .+..++. +-+.|.-.+.|
T Consensus 204 m~~~~~~~~~---~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~~G 249 (284)
T PRK12549 204 MAKHPGLPLP---AELLRPGLWVADIVYFPLETELLRAARALGCRTLDG 249 (284)
T ss_pred CCCCCCCCCC---HHHcCCCcEEEEeeeCCCCCHHHHHHHHCCCeEecC
Confidence 21 1 233 2457888899998766 3333444 33444333333
No 279
>PRK14030 glutamate dehydrogenase; Provisional
Probab=97.71 E-value=0.00017 Score=67.91 Aligned_cols=108 Identities=20% Similarity=0.287 Sum_probs=70.0
Q ss_pred CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEE--------Ee---CChhhH---HHHH------------hC-CCccc
Q psy16115 104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI--------TE---IDPICA---LQAC------------MD-GFSVV 156 (258)
Q Consensus 104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~--------~d---~~~~~~---~~a~------------~~-g~~~~ 156 (258)
+.++.|+||+|-|+|.+|..+|+.|...|++|++ || .+..+. .+.+ .. +.+..
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 5678999999999999999999999999999888 77 444432 1111 11 22333
Q ss_pred CHHHHHH-hCCeeeeccCccccccHHHHhcC-CCCcEEEecCCC-Ch-hhchhhhcCCCc
Q psy16115 157 KLNEVIR-TVDIVVTATGNKNVVTREHMDKM-KNGCVVCNMGHS-NT-EIDVNSLRTPDL 212 (258)
Q Consensus 157 ~l~e~~~-~aDvvi~~~~~~~~i~~~~l~~~-k~g~~ivnvg~~-~~-~~~~~~l~~~~i 212 (258)
+.++++. .|||++-|. ..+.|+.+..+.+ +.++.+|-=|-. .. ..-.+.|..+.|
T Consensus 303 ~~~~~~~~~cDVliPcA-l~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL~~rGI 361 (445)
T PRK14030 303 AGKKPWEQKVDIALPCA-TQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKFIAAKQ 361 (445)
T ss_pred CCccceeccccEEeecc-ccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHCCC
Confidence 3444443 589999987 6678887777776 334555544433 21 112245555555
No 280
>PLN02477 glutamate dehydrogenase
Probab=97.70 E-value=0.00014 Score=67.97 Aligned_cols=108 Identities=18% Similarity=0.323 Sum_probs=69.7
Q ss_pred cCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEE-EEeCC----------hhhHHHHHhC--------CCcccCHHHHH-
Q psy16115 103 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEID----------PICALQACMD--------GFSVVKLNEVI- 162 (258)
Q Consensus 103 ~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi-~~d~~----------~~~~~~a~~~--------g~~~~~l~e~~- 162 (258)
.+.+++|++|+|.|+|.+|+.+|+.|...|++|+ +.|.+ ...+.+.++. +.+..+.++++
T Consensus 200 ~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~ 279 (410)
T PLN02477 200 HGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILV 279 (410)
T ss_pred cCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCcccee
Confidence 4567899999999999999999999999999988 66765 4433222111 11223334443
Q ss_pred HhCCeeeeccCccccccHHHHhcCCCCcEEEecCCCChhh-chhhhcCCCc
Q psy16115 163 RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEI-DVNSLRTPDL 212 (258)
Q Consensus 163 ~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~-~~~~l~~~~i 212 (258)
..+||++-|. ..+.|+++....++-. +|+-.+.+.... --+.|..+.|
T Consensus 280 ~~~DvliP~A-l~~~I~~~na~~i~ak-~I~egAN~p~t~ea~~~L~~rGI 328 (410)
T PLN02477 280 EPCDVLIPAA-LGGVINKENAADVKAK-FIVEAANHPTDPEADEILRKKGV 328 (410)
T ss_pred ccccEEeecc-ccccCCHhHHHHcCCc-EEEeCCCCCCCHHHHHHHHHCCc
Confidence 3699999987 5668888888877532 334333332221 1245555555
No 281
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.69 E-value=0.00011 Score=64.55 Aligned_cols=87 Identities=14% Similarity=0.175 Sum_probs=58.6
Q ss_pred CEEEEEcCchHHHHHHHHHHhCC---CE-EEEEeCChhhHHHHHhCCCc-ccCHHHH-HHhCCeeeeccCccccccHHHH
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLG---CV-IYITEIDPICALQACMDGFS-VVKLNEV-IRTVDIVVTATGNKNVVTREHM 183 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G---~~-Vi~~d~~~~~~~~a~~~g~~-~~~l~e~-~~~aDvvi~~~~~~~~i~~~~l 183 (258)
.+|+|||+|.||+.+++.+..-+ .+ +.++++++.+....... .. ..+++++ ....|+|++|.+...+- +-..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~~~av~-e~~~ 80 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAGQQAIA-EHAE 80 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCCHHHHH-HHHH
Confidence 58999999999999999987542 45 55578777554333222 33 3468887 46799999997554433 2444
Q ss_pred hcCCCCcEEEecCCC
Q psy16115 184 DKMKNGCVVCNMGHS 198 (258)
Q Consensus 184 ~~~k~g~~ivnvg~~ 198 (258)
+.++.|.-++-.|.|
T Consensus 81 ~iL~~g~dlvv~SvG 95 (267)
T PRK13301 81 GCLTAGLDMIICSAG 95 (267)
T ss_pred HHHhcCCCEEEEChh
Confidence 556666666666665
No 282
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=97.69 E-value=4.2e-05 Score=68.61 Aligned_cols=90 Identities=23% Similarity=0.224 Sum_probs=68.7
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcc-c-----CHHH--HH--HhCCeeeeccCccc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSV-V-----KLNE--VI--RTVDIVVTATGNKN 176 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~-~-----~l~e--~~--~~aDvvi~~~~~~~ 176 (258)
+|++|+|+|.|.+|+.+++.++..|++ |++++.++.+...+.+.|... . +..+ .. +..|+++.+.+...
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~ 238 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPK 238 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChH
Confidence 789999999999999999999999997 888888887766655555531 1 1111 11 24799999986555
Q ss_pred cccHHHHhcCCCCcEEEecCCC
Q psy16115 177 VVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 177 ~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.+. +.++.+++++.++++|..
T Consensus 239 ~~~-~~~~~l~~~G~~v~~g~~ 259 (334)
T cd08234 239 TLE-QAIEYARRGGTVLVFGVY 259 (334)
T ss_pred HHH-HHHHHHhcCCEEEEEecC
Confidence 554 778889999999999865
No 283
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=97.68 E-value=0.00015 Score=64.23 Aligned_cols=90 Identities=19% Similarity=0.168 Sum_probs=69.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcc------cCHHHHH------HhCCeeeeccCc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSV------VKLNEVI------RTVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~------~~aDvvi~~~~~ 174 (258)
+|.+++|.|.|.+|..+++.++..|++ |++...++++...+.+.|+.. .++.+.+ .+.|+++.+.+.
T Consensus 129 ~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~ 208 (312)
T cd08269 129 AGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGH 208 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence 789999999999999999999999998 988888877766555666531 1222222 137999999766
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
...+. ..++.+++++.++++|..
T Consensus 209 ~~~~~-~~~~~l~~~g~~~~~g~~ 231 (312)
T cd08269 209 QWPLD-LAGELVAERGRLVIFGYH 231 (312)
T ss_pred HHHHH-HHHHHhccCCEEEEEccC
Confidence 55564 678899999999999864
No 284
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=97.68 E-value=0.00023 Score=63.60 Aligned_cols=88 Identities=24% Similarity=0.247 Sum_probs=69.5
Q ss_pred CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH-----hCCeeeeccCcc
Q psy16115 108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR-----TVDIVVTATGNK 175 (258)
Q Consensus 108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~-----~aDvvi~~~~~~ 175 (258)
+|++|+|.| .|.+|..+++.++.+|++|++++.++++...+++.|++. .++.+.++ +.|+++.+.+.
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~- 221 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGG- 221 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCH-
Confidence 789999999 599999999999999999999988888877777777642 12322222 36999998876
Q ss_pred ccccHHHHhcCCCCcEEEecCC
Q psy16115 176 NVVTREHMDKMKNGCVVCNMGH 197 (258)
Q Consensus 176 ~~i~~~~l~~~k~g~~ivnvg~ 197 (258)
..+ .+.++.++++++++.+|.
T Consensus 222 ~~~-~~~~~~l~~~G~iv~~g~ 242 (329)
T cd08294 222 EFS-STVLSHMNDFGRVAVCGS 242 (329)
T ss_pred HHH-HHHHHhhccCCEEEEEcc
Confidence 344 478899999999999875
No 285
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.68 E-value=0.00016 Score=69.31 Aligned_cols=68 Identities=24% Similarity=0.342 Sum_probs=53.8
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc---CHHHHHHhCCeeeeccCc
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV---KLNEVIRTVDIVVTATGN 174 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~---~l~e~~~~aDvvi~~~~~ 174 (258)
+.|++|+|+|+|.+|+++++.|+..|++|+++|..+.+...+.+.|+... ...+.++++|+|+.+++-
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi 80 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGF 80 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCC
Confidence 47899999999999999999999999999999987665544555676543 234556789999998653
No 286
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.68 E-value=0.00018 Score=67.74 Aligned_cols=94 Identities=17% Similarity=0.219 Sum_probs=64.4
Q ss_pred cCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEE-Ee----------CChhhHH---HHH------------hCCCccc
Q psy16115 103 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI-TE----------IDPICAL---QAC------------MDGFSVV 156 (258)
Q Consensus 103 ~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~-~d----------~~~~~~~---~a~------------~~g~~~~ 156 (258)
.+.++.|++|+|.|+|++|...|+.|..+|++|++ .| .+...+. ..+ ..++...
T Consensus 222 ~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i 301 (444)
T PRK14031 222 KGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV 301 (444)
T ss_pred cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc
Confidence 35679999999999999999999999999999876 66 4443321 000 0123333
Q ss_pred CHHHHHH-hCCeeeeccCccccccHHHHhcCCC-CcEEEecCC
Q psy16115 157 KLNEVIR-TVDIVVTATGNKNVVTREHMDKMKN-GCVVCNMGH 197 (258)
Q Consensus 157 ~l~e~~~-~aDvvi~~~~~~~~i~~~~l~~~k~-g~~ivnvg~ 197 (258)
+.++.+. .|||++-|. ..+.|+.+..+.++. ++.+|--|-
T Consensus 302 ~~d~~~~~~cDIliPaA-l~n~I~~~na~~l~a~g~~~V~EgA 343 (444)
T PRK14031 302 EGARPWGEKGDIALPSA-TQNELNGDDARQLVANGVIAVSEGA 343 (444)
T ss_pred CCcccccCCCcEEeecc-cccccCHHHHHHHHhcCCeEEECCC
Confidence 4444433 689999987 567888888888764 454444443
No 287
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=97.65 E-value=0.00053 Score=61.27 Aligned_cols=111 Identities=23% Similarity=0.329 Sum_probs=75.6
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEe--CChhhHHHHHhCCCccc-----CHHHHH------HhCCeeeeccCc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITE--IDPICALQACMDGFSVV-----KLNEVI------RTVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d--~~~~~~~~a~~~g~~~~-----~l~e~~------~~aDvvi~~~~~ 174 (258)
.|.+|+|.|.|.+|..+++.++..|++|+++. .+..+...+.+.|++.. ++.+.+ +..|+++.+.+.
T Consensus 164 ~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~ 243 (306)
T cd08258 164 PGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADAVNGGEEDLAELVNEITDGDGADVVIECSGA 243 (306)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhCCcccCCCcCCHHHHHHHHcCCCCCCEEEECCCC
Confidence 68999999999999999999999999987753 33444444555565311 222222 137999998765
Q ss_pred cccccHHHHhcCCCCcEEEecCCCC---hhhchhhhcCCCceeeeecc
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWEKVRS 219 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~~---~~~~~~~l~~~~i~~~~~~~ 219 (258)
...+. +.++.+++++.++++|... .+..+..+..+++++.++..
T Consensus 244 ~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~ 290 (306)
T cd08258 244 VPALE-QALELLRKGGRIVQVGIFGPLAASIDVERIIQKELSVIGSRS 290 (306)
T ss_pred hHHHH-HHHHHhhcCCEEEEEcccCCCCcccCHHHHhhcCcEEEEEec
Confidence 55554 7788899999999998752 22233344456677776643
No 288
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=97.65 E-value=7.3e-05 Score=67.52 Aligned_cols=88 Identities=20% Similarity=0.299 Sum_probs=66.1
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHH--HH--HhCCeeeeccCccc
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNE--VI--RTVDIVVTATGNKN 176 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e--~~--~~aDvvi~~~~~~~ 176 (258)
.|++|+|.|. |.+|+.+++.++..|++|++.+.+. +...+.+.|++.. ...+ .. +..|+++.+.+..
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~- 254 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVGGP- 254 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCHH-
Confidence 6899999998 9999999999999999988877554 5555666665321 1122 11 2479999998764
Q ss_pred cccHHHHhcCCCCcEEEecCCC
Q psy16115 177 VVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 177 ~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.++ +.++.+++++.++++|..
T Consensus 255 ~~~-~~~~~l~~~G~~v~~g~~ 275 (350)
T cd08274 255 LFP-DLLRLLRPGGRYVTAGAI 275 (350)
T ss_pred HHH-HHHHHhccCCEEEEeccc
Confidence 443 788999999999998754
No 289
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.65 E-value=0.00018 Score=63.31 Aligned_cols=121 Identities=19% Similarity=0.171 Sum_probs=76.8
Q ss_pred HHHHHHhCC--CEEEEEeCChhhHHHHHhCCCccc--CHHHHHHhCCeeeeccC---ccccccHHHHhcCCCCcEEEecC
Q psy16115 124 CCQSLKGLG--CVIYITEIDPICALQACMDGFSVV--KLNEVIRTVDIVVTATG---NKNVVTREHMDKMKNGCVVCNMG 196 (258)
Q Consensus 124 ~a~~l~~~G--~~Vi~~d~~~~~~~~a~~~g~~~~--~l~e~~~~aDvvi~~~~---~~~~i~~~~l~~~k~g~~ivnvg 196 (258)
+|+.|+..| .+|+++|+++.....+.+.|+... +-.+.++++|+|++|+. ...++. +....++++++++|+|
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l~-~~~~~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSAIEDVLE-EIAPYLKPGAIVTDVG 79 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHHH-HHHCGS-TTSEEEE--
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHHH-HhhhhcCCCcEEEEeC
Confidence 477888888 589999999999888888887532 22577899999999963 334443 5556689999999999
Q ss_pred CCChhh--chhhhcCCCceeeeeccCcce----eecCCCccCCCceeEEecCCCh
Q psy16115 197 HSNTEI--DVNSLRTPDLTWEKVRSQVDH----VIWPDVNLKNNTVIDLFRKPKS 245 (258)
Q Consensus 197 ~~~~~~--~~~~l~~~~i~~~~~~~~~~~----~~~~~~~l~~~~~~~l~~~~~~ 245 (258)
.-.... .+.........+.+.+|.... +..+...+-.+..+.+++++..
T Consensus 80 SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~ 134 (258)
T PF02153_consen 80 SVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDT 134 (258)
T ss_dssp S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS
T ss_pred CCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCC
Confidence 874332 222222245677777765422 4455555556777778876654
No 290
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=97.63 E-value=0.00028 Score=62.98 Aligned_cols=89 Identities=19% Similarity=0.157 Sum_probs=67.3
Q ss_pred CCC-EEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-c---CHHHHH-----HhCCeeeeccCccc
Q psy16115 108 GGK-QVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-V---KLNEVI-----RTVDIVVTATGNKN 176 (258)
Q Consensus 108 ~g~-~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~---~l~e~~-----~~aDvvi~~~~~~~ 176 (258)
.|. +|+|.|. |.+|..+++.++..|+++++...++.+...+.+.|++. . +....+ ...|+++.+.+..
T Consensus 144 ~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~- 222 (323)
T TIGR02823 144 PEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLKELGASEVIDREDLSPPGKPLEKERWAGAVDTVGGH- 222 (323)
T ss_pred CCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcEEEccccHHHHHHHhcCCCceEEEECccHH-
Confidence 677 9999998 99999999999999999888777766666666666531 1 111111 1369999998765
Q ss_pred cccHHHHhcCCCCcEEEecCCC
Q psy16115 177 VVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 177 ~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.++ +.++.++++++++++|..
T Consensus 223 ~~~-~~~~~l~~~G~~v~~g~~ 243 (323)
T TIGR02823 223 TLA-NVLAQLKYGGAVAACGLA 243 (323)
T ss_pred HHH-HHHHHhCCCCEEEEEccc
Confidence 454 789999999999999864
No 291
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=97.62 E-value=0.0003 Score=66.27 Aligned_cols=109 Identities=20% Similarity=0.255 Sum_probs=71.2
Q ss_pred cCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEE-EEeCC----------hhhHH---HHHh-------------CCCcc
Q psy16115 103 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEID----------PICAL---QACM-------------DGFSV 155 (258)
Q Consensus 103 ~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi-~~d~~----------~~~~~---~a~~-------------~g~~~ 155 (258)
.+.++.|+||+|-|+|.+|+.+|+.|...|++|+ +.|.+ ..++. ..+. .+++.
T Consensus 231 ~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~ 310 (454)
T PTZ00079 231 LNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKY 310 (454)
T ss_pred cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEE
Confidence 3567899999999999999999999999999977 77766 33321 1111 02223
Q ss_pred cCHHHHH-HhCCeeeeccCccccccHHHHhcC-CCCcEEEecCCC-Ch-hhchhhhcCCCc
Q psy16115 156 VKLNEVI-RTVDIVVTATGNKNVVTREHMDKM-KNGCVVCNMGHS-NT-EIDVNSLRTPDL 212 (258)
Q Consensus 156 ~~l~e~~-~~aDvvi~~~~~~~~i~~~~l~~~-k~g~~ivnvg~~-~~-~~~~~~l~~~~i 212 (258)
.+.++.+ ..|||.+-|. +.+.|+.+..+.+ +.++.+|--|-. +. ..-.+.|..+.|
T Consensus 311 ~~~~~~~~~~cDI~iPcA-~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L~~~GI 370 (454)
T PTZ00079 311 VPGKKPWEVPCDIAFPCA-TQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLFKKNGV 370 (454)
T ss_pred eCCcCcccCCccEEEecc-ccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCc
Confidence 3333333 2689999987 6778887777765 666777765554 21 122244555544
No 292
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.62 E-value=0.00011 Score=59.82 Aligned_cols=87 Identities=16% Similarity=0.139 Sum_probs=56.3
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCC-Ccc--cCH-HHHHHhCCeeeeccCccccccHH
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG-FSV--VKL-NEVIRTVDIVVTATGNKNVVTRE 181 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g-~~~--~~l-~e~~~~aDvvi~~~~~~~~i~~~ 181 (258)
++.|++|+|+|.|.+|...++.|...|++|+++++... ++..+.+ ... ..+ ++-+.++|+|+.+++... +|..
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~--~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e-~N~~ 86 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEIC--KEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHA-VNMM 86 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccC--HHHHhccCcEEEecccChhcCCCceEEEECCCCHH-HHHH
Confidence 57999999999999999999999999999999864432 2222222 111 111 223567899999885554 4433
Q ss_pred HHhcCCCCcEEEecC
Q psy16115 182 HMDKMKNGCVVCNMG 196 (258)
Q Consensus 182 ~l~~~k~g~~ivnvg 196 (258)
.....+.+ .++|+.
T Consensus 87 i~~~a~~~-~~vn~~ 100 (157)
T PRK06719 87 VKQAAHDF-QWVNVV 100 (157)
T ss_pred HHHHHHHC-CcEEEC
Confidence 33333444 456644
No 293
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.62 E-value=0.00032 Score=66.19 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=69.9
Q ss_pred CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEE-e----------CChhhHHHHHhC------------CCcccCHHH
Q psy16115 104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYIT-E----------IDPICALQACMD------------GFSVVKLNE 160 (258)
Q Consensus 104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~-d----------~~~~~~~~a~~~------------g~~~~~l~e 160 (258)
+.++.|++|+|.|+|.+|+.+|+.|..+|++|+++ | .+...+.+.++. +.+..+.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 56789999999999999999999999999998876 7 555543322211 122233444
Q ss_pred HHH-hCCeeeeccCccccccHHHHhcC-CCCcEEEecCCC-Chhh-chhhhcCCCc
Q psy16115 161 VIR-TVDIVVTATGNKNVVTREHMDKM-KNGCVVCNMGHS-NTEI-DVNSLRTPDL 212 (258)
Q Consensus 161 ~~~-~aDvvi~~~~~~~~i~~~~l~~~-k~g~~ivnvg~~-~~~~-~~~~l~~~~i 212 (258)
++. .|||++.|+ ..+.++.+....+ ++++.+|--|-. +... -.+.|..+.|
T Consensus 307 i~~~d~DVliPaA-l~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L~~rGI 361 (445)
T PRK09414 307 PWSVPCDIALPCA-TQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVFLEAGV 361 (445)
T ss_pred ccccCCcEEEecC-CcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHHHHCCc
Confidence 443 699999997 5667777766666 334555544433 2221 2235555555
No 294
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=97.62 E-value=0.00016 Score=64.71 Aligned_cols=85 Identities=20% Similarity=0.256 Sum_probs=63.3
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc----C----HHHHHHhCCeeeeccCccccc
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV----K----LNEVIRTVDIVVTATGNKNVV 178 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~----~----l~e~~~~aDvvi~~~~~~~~i 178 (258)
.|.+|+|.|. |.+|+.+++.++..|++|+++++. ..+.+.|++.. + +.++....|+++.+++.. .+
T Consensus 162 ~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~~----~~~~~~g~~~~~~~~~~~~~l~~~~~~~d~vl~~~g~~-~~ 236 (325)
T cd08264 162 PGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSRK----DWLKEFGADEVVDYDEVEEKVKEITKMADVVINSLGSS-FW 236 (325)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeHH----HHHHHhCCCeeecchHHHHHHHHHhCCCCEEEECCCHH-HH
Confidence 7899999998 999999999999999998887642 23344554311 1 111223579999998763 45
Q ss_pred cHHHHhcCCCCcEEEecCCC
Q psy16115 179 TREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 179 ~~~~l~~~k~g~~ivnvg~~ 198 (258)
. +.++.+++++.++++|..
T Consensus 237 ~-~~~~~l~~~g~~v~~g~~ 255 (325)
T cd08264 237 D-LSLSVLGRGGRLVTFGTL 255 (325)
T ss_pred H-HHHHhhccCCEEEEEecC
Confidence 4 789999999999998853
No 295
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.58 E-value=0.00012 Score=68.60 Aligned_cols=85 Identities=41% Similarity=0.643 Sum_probs=74.4
Q ss_pred chheeeeccccccccccCCCcchh------hHHHHHHHHHhCCCCCCCCceEECChhhhHHHHhcccCccccccccCCHH
Q psy16115 6 TVQWTLGFKRRVSPVCIRSNPLII------PQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDE 79 (258)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~~~~~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~ 79 (258)
..-++++.+|++|+.++.+||.++ .|+++..+++..+ .++..+|+.+|+.+++++|.+.+..++..++.+++.
T Consensus 323 ~aI~LLa~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~-~~~~~kV~~~p~~~d~~vA~~~l~~~g~~~~~lt~~ 401 (413)
T cd00401 323 RRIILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNR-DKYEVGVYFLPKKLDEEVARLHLGKLGVKLTKLTDK 401 (413)
T ss_pred chhhhhhCcCCCCCcccCCCccceechhHHHHHHHHHHHHhcC-CcCCCcEEECCHHHHHHHHHHHHHhcCceeccCCHH
Confidence 355788999999999999999553 5899999999883 556789999999999999999999999999999999
Q ss_pred HHHhhhcccCCC
Q psy16115 80 QAKYMGLNKAGP 91 (258)
Q Consensus 80 ~~~~~~~~~~g~ 91 (258)
+.+|+..|+.|+
T Consensus 402 q~~y~~~~~~g~ 413 (413)
T cd00401 402 QAEYLGVPVEGP 413 (413)
T ss_pred HHHHhcCCcCCC
Confidence 999998877663
No 296
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.57 E-value=0.00037 Score=64.17 Aligned_cols=88 Identities=18% Similarity=0.199 Sum_probs=61.8
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc---ccCHHH------------------HHHhCCee
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---VVKLNE------------------VIRTVDIV 168 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~---~~~l~e------------------~~~~aDvv 168 (258)
.+++|+|+|-||+.+|.++...|.+|+++|+++.+.... ..|.. ..++++ .++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~l-n~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKL-NRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHH-hCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEE
Confidence 899999999999999999999999999999998876432 22221 122332 23368999
Q ss_pred eeccCccc----------ccc--HHHHhcCCCCcEEEecCCC
Q psy16115 169 VTATGNKN----------VVT--REHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 169 i~~~~~~~----------~i~--~~~l~~~k~g~~ivnvg~~ 198 (258)
+.|..|+- +.+ +..-+.||+|..+|--|..
T Consensus 89 iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~ 130 (436)
T COG0677 89 IICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTT 130 (436)
T ss_pred EEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 99843331 111 1223568999999887765
No 297
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=97.57 E-value=0.00026 Score=63.19 Aligned_cols=89 Identities=22% Similarity=0.192 Sum_probs=69.9
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-C---H-HHHH-----HhCCeeeeccCccc
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-K---L-NEVI-----RTVDIVVTATGNKN 176 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~---l-~e~~-----~~aDvvi~~~~~~~ 176 (258)
.|++|+|.|. |.+|..+++.++..|++|++.++++++...+.+.|+... + . .+.+ ...|+++.+.+..
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~~- 224 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGGK- 224 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcHH-
Confidence 4789999998 999999999999999999999988888777777776321 1 1 1111 1379999998763
Q ss_pred cccHHHHhcCCCCcEEEecCCC
Q psy16115 177 VVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 177 ~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.+. +.++.++++++++.+|..
T Consensus 225 ~~~-~~~~~l~~~G~~i~~g~~ 245 (326)
T cd08289 225 TLA-YLLSTLQYGGSVAVSGLT 245 (326)
T ss_pred HHH-HHHHHhhcCCEEEEEeec
Confidence 454 789999999999999864
No 298
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=97.56 E-value=0.00036 Score=61.71 Aligned_cols=89 Identities=22% Similarity=0.322 Sum_probs=68.9
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-----CHHHHH----HhCCeeeeccCcccc
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----KLNEVI----RTVDIVVTATGNKNV 177 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-----~l~e~~----~~aDvvi~~~~~~~~ 177 (258)
.|++|+|.|. |.+|+.+++.++..|++|++...++++...+.+.|++.. ++.+.+ ...|+++.+.+. ..
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~d~vl~~~~~-~~ 220 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKELGADEVVIDDGAIAEQLRAAPGGFDKVLELVGT-AT 220 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEecCccHHHHHHHhCCCceEEEECCCh-HH
Confidence 6899999997 899999999999999999988888877766666665321 222211 248999998875 34
Q ss_pred ccHHHHhcCCCCcEEEecCCC
Q psy16115 178 VTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 178 i~~~~l~~~k~g~~ivnvg~~ 198 (258)
+. +.++.++++++++.+|..
T Consensus 221 ~~-~~~~~l~~~g~~v~~g~~ 240 (320)
T cd08243 221 LK-DSLRHLRPGGIVCMTGLL 240 (320)
T ss_pred HH-HHHHHhccCCEEEEEccC
Confidence 54 778899999999999863
No 299
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00024 Score=65.71 Aligned_cols=93 Identities=22% Similarity=0.334 Sum_probs=66.1
Q ss_pred CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh------------------hHHH-HHhCCCcccCHHHHHH-
Q psy16115 104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI------------------CALQ-ACMDGFSVVKLNEVIR- 163 (258)
Q Consensus 104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~------------------~~~~-a~~~g~~~~~l~e~~~- 163 (258)
+.++.|+||+|-|+|++|+.+|+.+...|++|++++-+.- +... ....+.++.+-++++.
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~ 281 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEV 281 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccc
Confidence 4458999999999999999999999999999888765433 1111 1112444444455554
Q ss_pred hCCeeeeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115 164 TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 164 ~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.|||.+-|. +.+.|+.+..+.++.. +++-.+.+
T Consensus 282 ~cDIl~PcA-~~n~I~~~na~~l~ak-~V~EgAN~ 314 (411)
T COG0334 282 DCDILIPCA-LENVITEDNADQLKAK-IVVEGANG 314 (411)
T ss_pred cCcEEcccc-cccccchhhHHHhhhc-EEEeccCC
Confidence 689998886 6777888888888766 55555544
No 300
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.55 E-value=0.00059 Score=65.26 Aligned_cols=103 Identities=13% Similarity=0.171 Sum_probs=68.4
Q ss_pred CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHH-hCCCcccCHHHH--HHhCCeeeeccCccccccH
Q psy16115 104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSVVKLNEV--IRTVDIVVTATGNKNVVTR 180 (258)
Q Consensus 104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~-~~g~~~~~l~e~--~~~aDvvi~~~~~~~~i~~ 180 (258)
+.++.+++++|+|.|.+|+.++..+...|++|+++++++.+.+... ..+....+.++. +.++|+|+.|+.....+.
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~~~- 405 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVTIP- 405 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCcch-
Confidence 4457899999999999999999999999999999999887654332 222222233332 467899999974433343
Q ss_pred HHHhcCCCCcEEEecCCC-ChhhchhhhcCCCc
Q psy16115 181 EHMDKMKNGCVVCNMGHS-NTEIDVNSLRTPDL 212 (258)
Q Consensus 181 ~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i 212 (258)
+.+ . .+++|+.-. ....++...+....
T Consensus 406 ~~l---~--~~v~D~~Y~P~~T~ll~~A~~~G~ 433 (477)
T PRK09310 406 KAF---P--PCVVDINTLPKHSPYTQYARSQGS 433 (477)
T ss_pred hHH---h--hhEEeccCCCCCCHHHHHHHHCcC
Confidence 333 2 378888766 33334454444333
No 301
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=97.54 E-value=0.00021 Score=64.48 Aligned_cols=90 Identities=20% Similarity=0.291 Sum_probs=67.5
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCccc------CHH----HHHH--hCCeeeeccCc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV------KLN----EVIR--TVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~------~l~----e~~~--~aDvvi~~~~~ 174 (258)
+|++|+|.|.|.+|..+++.++..|.+ |++++.++.+.....+.|.+.. +.. +... ..|+++.+.+.
T Consensus 165 ~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~vd~vld~~~~ 244 (343)
T cd08235 165 PGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVRELTDGRGADVVIVATGS 244 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHHhCCcCCCEEEECCCC
Confidence 789999999999999999999999998 8888888777665555554321 121 2222 37999998775
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
...+. ..++.+++++.++..|..
T Consensus 245 ~~~~~-~~~~~l~~~g~~v~~~~~ 267 (343)
T cd08235 245 PEAQA-QALELVRKGGRILFFGGL 267 (343)
T ss_pred hHHHH-HHHHHhhcCCEEEEEecc
Confidence 55554 678889999999988754
No 302
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.54 E-value=0.00022 Score=69.44 Aligned_cols=69 Identities=26% Similarity=0.329 Sum_probs=51.5
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh---------------------hhHHHHHhCCCcc-------c--C
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP---------------------ICALQACMDGFSV-------V--K 157 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~---------------------~~~~~a~~~g~~~-------~--~ 157 (258)
.|++|+|||.|++|..+|..|+..|++|+++|..+ .+...+.+.|++. . +
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~ 215 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT 215 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence 79999999999999999999999999999998532 2334455667642 1 2
Q ss_pred HHHHHHhCCeeeeccCccc
Q psy16115 158 LNEVIRTVDIVVTATGNKN 176 (258)
Q Consensus 158 l~e~~~~aDvvi~~~~~~~ 176 (258)
.++...+.|+|++++|...
T Consensus 216 ~~~~~~~~D~Vi~AtG~~~ 234 (564)
T PRK12771 216 LEQLEGEFDAVFVAIGAQL 234 (564)
T ss_pred HHHHHhhCCEEEEeeCCCC
Confidence 3344456899999976543
No 303
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=97.53 E-value=0.00017 Score=64.13 Aligned_cols=92 Identities=24% Similarity=0.360 Sum_probs=71.8
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc---------------C----------HHHH
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV---------------K----------LNEV 161 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~---------------~----------l~e~ 161 (258)
.++.++.++|+|-+|...+...+..|+-|..+|..+.+.++-...|.... + +.+.
T Consensus 162 v~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a~~ 241 (356)
T COG3288 162 VSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVAEQ 241 (356)
T ss_pred ccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999998887655443332211 1 2334
Q ss_pred HHhCCeeeec---cC--ccccccHHHHhcCCCCcEEEecCCC
Q psy16115 162 IRTVDIVVTA---TG--NKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 162 ~~~aDvvi~~---~~--~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
+++.||||.+ +| .+.++.++..+.||||.++||.+-.
T Consensus 242 ~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~ 283 (356)
T COG3288 242 AKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAE 283 (356)
T ss_pred hcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhh
Confidence 5578999997 33 4568999999999999999998754
No 304
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=97.51 E-value=0.00087 Score=60.75 Aligned_cols=90 Identities=27% Similarity=0.293 Sum_probs=69.9
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc------CHHHHH----H-hCCeeeeccCcc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV------KLNEVI----R-TVDIVVTATGNK 175 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~----~-~aDvvi~~~~~~ 175 (258)
.|++|+|.|.|.+|..+++.++..|+ +|++.+.++.+...+.+.|++.. +..+.+ . ..|+++.+.+..
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 254 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVNNS 254 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhCCCCcEEEECCCCH
Confidence 68999999999999999999999999 68888888887766666665321 111112 2 479999998765
Q ss_pred ccccHHHHhcCCCCcEEEecCCC
Q psy16115 176 NVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 176 ~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
..+. +.++.|+++++++.+|..
T Consensus 255 ~~~~-~~~~~l~~~g~~v~~g~~ 276 (350)
T cd08240 255 ATAS-LAFDILAKGGKLVLVGLF 276 (350)
T ss_pred HHHH-HHHHHhhcCCeEEEECCC
Confidence 5665 789999999999998765
No 305
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.49 E-value=0.00053 Score=52.44 Aligned_cols=65 Identities=26% Similarity=0.325 Sum_probs=50.8
Q ss_pred EEEEEcCchHHHHHHHHHHhC--CCEE-EEEeCChhhHHH-HHhCCCc-ccCHHHHHH--hCCeeeeccCcc
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGL--GCVI-YITEIDPICALQ-ACMDGFS-VVKLNEVIR--TVDIVVTATGNK 175 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~--G~~V-i~~d~~~~~~~~-a~~~g~~-~~~l~e~~~--~aDvvi~~~~~~ 175 (258)
+++|||+|.+|+.....++.. +.++ -++|+++.+.+. +...+.. +.+++++++ +.|+|++++.+.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPS 73 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGG
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCc
Confidence 689999999999999888877 3464 468999987664 4456665 568999998 689999997544
No 306
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=97.48 E-value=0.00044 Score=63.29 Aligned_cols=90 Identities=24% Similarity=0.327 Sum_probs=68.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCccc------CHHH-H---H--HhCCeeeeccCc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV------KLNE-V---I--RTVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~------~l~e-~---~--~~aDvvi~~~~~ 174 (258)
.|++|+|.|.|.+|+.+++.++..|++ |++++.++.+...+.+.|++.. +..+ + . ...|+++.+.+.
T Consensus 187 ~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~vg~ 266 (367)
T cd08263 187 PGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVEALGK 266 (367)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEEEeCCC
Confidence 688999999999999999999999997 8888888777666656665311 2221 1 2 137999998776
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
...+. +.++.+++++.++++|..
T Consensus 267 ~~~~~-~~~~~l~~~G~~v~~g~~ 289 (367)
T cd08263 267 PETFK-LALDVVRDGGRAVVVGLA 289 (367)
T ss_pred HHHHH-HHHHHHhcCCEEEEEccC
Confidence 53454 788899999999999865
No 307
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=97.47 E-value=0.00028 Score=63.68 Aligned_cols=90 Identities=26% Similarity=0.307 Sum_probs=67.8
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcc-c-----CHHHH---HH--hCCeeeeccCcc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSV-V-----KLNEV---IR--TVDIVVTATGNK 175 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~-~-----~l~e~---~~--~aDvvi~~~~~~ 175 (258)
.|.+|+|.|.|.+|..+++.++.+|++ |++++.++.+.....+.|... . +.+++ .. +.|+++.|.+..
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~ 238 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAAGSP 238 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEECCCCH
Confidence 688999999999999999999999997 999888776665555555421 1 12222 22 379999997665
Q ss_pred ccccHHHHhcCCCCcEEEecCCC
Q psy16115 176 NVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 176 ~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
..+. ..++.+++++.++.+|..
T Consensus 239 ~~~~-~~~~~l~~~G~~v~~g~~ 260 (343)
T cd08236 239 ATIE-QALALARPGGKVVLVGIP 260 (343)
T ss_pred HHHH-HHHHHhhcCCEEEEEccc
Confidence 5554 778889999999999865
No 308
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=97.47 E-value=0.00047 Score=60.23 Aligned_cols=105 Identities=23% Similarity=0.387 Sum_probs=69.0
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEE--------eCChhhHHHHH----hCCC-------------cccCHH-
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYIT--------EIDPICALQAC----MDGF-------------SVVKLN- 159 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~--------d~~~~~~~~a~----~~g~-------------~~~~l~- 159 (258)
++.|++|.|-|+|.+|..+|+.|...|++|+.+ |++........ +.+. +..+-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 479999999999999999999999999997665 54433322111 1121 112222
Q ss_pred HHH-HhCCeeeeccCccccccHHHHh-cCCCCcEEEecCCC---ChhhchhhhcCCCc
Q psy16115 160 EVI-RTVDIVVTATGNKNVVTREHMD-KMKNGCVVCNMGHS---NTEIDVNSLRTPDL 212 (258)
Q Consensus 160 e~~-~~aDvvi~~~~~~~~i~~~~l~-~~k~g~~ivnvg~~---~~~~~~~~l~~~~i 212 (258)
+++ ..+||++-|. ..+.|+.+... .++.++.+|--|-. ..++. ..|.++.|
T Consensus 109 ~il~~~~DiliP~A-~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~-~~L~~rGI 164 (244)
T PF00208_consen 109 EILSVDCDILIPCA-LGNVINEDNAPSLIKSGAKIIVEGANGPLTPEAD-EILRERGI 164 (244)
T ss_dssp HGGTSSSSEEEEES-SSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHH-HHHHHTT-
T ss_pred ccccccccEEEEcC-CCCeeCHHHHHHHHhccCcEEEeCcchhccHHHH-HHHHHCCC
Confidence 444 3799999994 77788888888 88877777765554 23333 25655555
No 309
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=97.46 E-value=0.00054 Score=61.73 Aligned_cols=90 Identities=20% Similarity=0.184 Sum_probs=69.2
Q ss_pred CCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc----c--CHHH-HH-----HhCCeeeeccCc
Q psy16115 108 GGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV----V--KLNE-VI-----RTVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~----~--~l~e-~~-----~~aDvvi~~~~~ 174 (258)
.|.+++|.|.|. +|..+++.++..|++|+++..++++...+.+.|++. . +..+ +. +..|+++.+.+.
T Consensus 165 ~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vd~vl~~~~~ 244 (341)
T cd08297 165 PGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKELGADAFVDFKKSDDVEAVKELTGGGGAHAVVVTAVS 244 (341)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHhcCCCCCEEEEcCCc
Confidence 689999999987 999999999999999999988887776666666532 1 1211 21 236999987665
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
...++ +.++.++++++++++|..
T Consensus 245 ~~~~~-~~~~~l~~~g~~v~~g~~ 267 (341)
T cd08297 245 AAAYE-QALDYLRPGGTLVCVGLP 267 (341)
T ss_pred hHHHH-HHHHHhhcCCEEEEecCC
Confidence 55665 788899999999999855
No 310
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=97.46 E-value=0.00033 Score=62.88 Aligned_cols=88 Identities=23% Similarity=0.334 Sum_probs=66.4
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-c---CHHHHH---HhCCeeeeccCcccccc
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-V---KLNEVI---RTVDIVVTATGNKNVVT 179 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~---~l~e~~---~~aDvvi~~~~~~~~i~ 179 (258)
.|.+|+|.|. |.+|+.+++.++..|++|++.+.++++.+.+.+. ++. . +..+.+ ...|+++.+++.. .+.
T Consensus 162 ~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~d~~ld~~g~~-~~~ 239 (334)
T PRK13771 162 KGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVGSKFSEEVKKIGGADIVIETVGTP-TLE 239 (334)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCchhHHHHHHhcCCCcEEEEcCChH-HHH
Confidence 6899999999 8999999999999999999988888776554333 211 1 122222 2479999998764 343
Q ss_pred HHHHhcCCCCcEEEecCCC
Q psy16115 180 REHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 180 ~~~l~~~k~g~~ivnvg~~ 198 (258)
+.++.+++++.++.+|..
T Consensus 240 -~~~~~l~~~G~~v~~g~~ 257 (334)
T PRK13771 240 -ESLRSLNMGGKIIQIGNV 257 (334)
T ss_pred -HHHHHHhcCCEEEEEecc
Confidence 788999999999999865
No 311
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=97.45 E-value=0.0006 Score=60.61 Aligned_cols=89 Identities=18% Similarity=0.194 Sum_probs=69.3
Q ss_pred CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHH------HhCCeeeeccCc
Q psy16115 108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVI------RTVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~------~~aDvvi~~~~~ 174 (258)
.|.+|+|.| .|.+|..+++.++..|++|++.++++.+.+.+.+.|.... +..+.+ +..|+++.+.+.
T Consensus 142 ~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~ 221 (324)
T cd08244 142 PGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRALGADVAVDYTRPDWPDQVREALGGGGVTVVLDGVGG 221 (324)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHcCCCCceEEEECCCh
Confidence 688999999 6999999999999999999999988887766666665321 122222 247999999876
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.. . ...++.+++++.++++|..
T Consensus 222 ~~-~-~~~~~~l~~~g~~v~~g~~ 243 (324)
T cd08244 222 AI-G-RAALALLAPGGRFLTYGWA 243 (324)
T ss_pred Hh-H-HHHHHHhccCcEEEEEecC
Confidence 64 3 4788999999999999865
No 312
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.45 E-value=0.00051 Score=63.77 Aligned_cols=87 Identities=24% Similarity=0.226 Sum_probs=64.4
Q ss_pred CCEEEEEcCchHHHHHHHHHHh-C-CC-EEEEEeCChhhHHHHH-----hC-CC---c-ccCHHHHHHhCCeeeeccCc-
Q psy16115 109 GKQVVLCGYGEVGKGCCQSLKG-L-GC-VIYITEIDPICALQAC-----MD-GF---S-VVKLNEVIRTVDIVVTATGN- 174 (258)
Q Consensus 109 g~~V~IiG~G~IG~~~a~~l~~-~-G~-~Vi~~d~~~~~~~~a~-----~~-g~---~-~~~l~e~~~~aDvvi~~~~~- 174 (258)
-++++|||+|..++..++.+.. + .. +|.+|++++.+.+... .. +. . ..+.++++++||+|++||..
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 5899999999999999998876 4 24 6999999998765311 11 22 2 24789999999999998632
Q ss_pred c------ccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 K------NVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~------~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
. .+++. +++|+|+.+..+|..
T Consensus 235 ~~~~s~~Pv~~~---~~lkpG~hv~~ig~~ 261 (379)
T PRK06199 235 TGDPSTYPYVKR---EWVKPGAFLLMPAAC 261 (379)
T ss_pred CCCCCcCcEecH---HHcCCCcEEecCCcc
Confidence 2 55653 367999988877764
No 313
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.44 E-value=0.00016 Score=57.76 Aligned_cols=94 Identities=13% Similarity=0.208 Sum_probs=60.8
Q ss_pred EEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc--------------C-HHHHHHhCCeeeeccCccc
Q psy16115 112 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--------------K-LNEVIRTVDIVVTATGNKN 176 (258)
Q Consensus 112 V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~--------------~-l~e~~~~aDvvi~~~~~~~ 176 (258)
|+|+|+|.||..+|..|+..|.+|.++.+.+ +.+...+.|.... . ..+.....|+|++|+.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc
Confidence 6899999999999999999999999999887 5544444443211 1 1134567899999974443
Q ss_pred ---cccHHHHhcCCCCcEEEecCCC--Chhhchhhh
Q psy16115 177 ---VVTREHMDKMKNGCVVCNMGHS--NTEIDVNSL 207 (258)
Q Consensus 177 ---~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l 207 (258)
.+. ..-..+++++.++-.-.| ..+.+.+.+
T Consensus 80 ~~~~l~-~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 80 LEQALQ-SLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp HHHHHH-HHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred hHHHHH-HHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 332 333345666677666555 344444444
No 314
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=97.43 E-value=0.00044 Score=62.30 Aligned_cols=90 Identities=27% Similarity=0.349 Sum_probs=67.6
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHH----H--hCCeeeeccCcc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVI----R--TVDIVVTATGNK 175 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~----~--~aDvvi~~~~~~ 175 (258)
.|++|+|.|.|.+|..+++.++..|.+|++...++++.....+.|.+. .++.+.+ . ..|+++.+.+..
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g~~ 238 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATGNP 238 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCCCH
Confidence 789999999999999999999999999988877777665555555421 1222222 2 369999997655
Q ss_pred ccccHHHHhcCCCCcEEEecCCC
Q psy16115 176 NVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 176 ~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
..+. +.++.+++++.++.+|..
T Consensus 239 ~~~~-~~~~~l~~~G~~i~~g~~ 260 (337)
T cd08261 239 ASME-EAVELVAHGGRVVLVGLS 260 (337)
T ss_pred HHHH-HHHHHHhcCCEEEEEcCC
Confidence 5554 678889999999988755
No 315
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=97.41 E-value=0.0029 Score=56.11 Aligned_cols=95 Identities=17% Similarity=0.275 Sum_probs=74.6
Q ss_pred CcccCCCEEEEEcCchHHHHHHHHHHhC----CC-------EEEEEeCC-----------hhhHHHHHhCC-CcccCHHH
Q psy16115 104 DVMFGGKQVVLCGYGEVGKGCCQSLKGL----GC-------VIYITEID-----------PICALQACMDG-FSVVKLNE 160 (258)
Q Consensus 104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~----G~-------~Vi~~d~~-----------~~~~~~a~~~g-~~~~~l~e 160 (258)
+..+...+++++|+|.-|..+++++... |. +++++|++ +.+...+.... -...++.|
T Consensus 20 g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e 99 (279)
T cd05312 20 GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLE 99 (279)
T ss_pred CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHH
Confidence 4557899999999999999999999877 87 58888875 12222232221 13358999
Q ss_pred HHH--hCCeeeeccCccccccHHHHhcCC---CCcEEEecCCC
Q psy16115 161 VIR--TVDIVVTATGNKNVVTREHMDKMK---NGCVVCNMGHS 198 (258)
Q Consensus 161 ~~~--~aDvvi~~~~~~~~i~~~~l~~~k---~g~~ivnvg~~ 198 (258)
+++ +.|++|-+++..++++++.++.|. +..+|.=.+.+
T Consensus 100 ~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP 142 (279)
T cd05312 100 VVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNP 142 (279)
T ss_pred HHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCc
Confidence 999 789999999888999999999998 78888888887
No 316
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.00036 Score=60.21 Aligned_cols=66 Identities=27% Similarity=0.374 Sum_probs=49.8
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh--CCCcc-----cC---HHHH-HHhCCeeeeccCcc
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM--DGFSV-----VK---LNEV-IRTVDIVVTATGNK 175 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~--~g~~~-----~~---l~e~-~~~aDvvi~~~~~~ 175 (258)
++++|+|+|.+|+.+|+.|...|..|+++|.++++...... ..... .+ ++++ +.++|+++.++++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 47899999999999999999999999999999998766333 33321 12 2332 34689999987653
No 317
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.41 E-value=0.00077 Score=60.71 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=60.2
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHHHHh-C-------CC--c-ccCHHHHHHhCCeeeeccCccc
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACM-D-------GF--S-VVKLNEVIRTVDIVVTATGNKN 176 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~a~~-~-------g~--~-~~~l~e~~~~aDvvi~~~~~~~ 176 (258)
++|+|||+|.+|+.+|..|...|. +++++|+++.+...... . +. . .....+.++++|+|+.+++.+.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 479999999999999999999884 79999998876432111 1 11 1 1122345789999999975431
Q ss_pred ---------------ccc--HHHHhcCCCCcEEEecCCC
Q psy16115 177 ---------------VVT--REHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 177 ---------------~i~--~~~l~~~k~g~~ivnvg~~ 198 (258)
++. .+.++...+.+++++++-+
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP 119 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNP 119 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCh
Confidence 111 0123445678999999865
No 318
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.39 E-value=0.00074 Score=59.37 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=57.9
Q ss_pred CCEEEEEcCchHHHHHHHHHHhCCC----EEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCccc---cccH
Q psy16115 109 GKQVVLCGYGEVGKGCCQSLKGLGC----VIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKN---VVTR 180 (258)
Q Consensus 109 g~~V~IiG~G~IG~~~a~~l~~~G~----~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~---~i~~ 180 (258)
..+++|||+|.||.++++.+...|. +++++++++.+. +.. ..+..+.++++|+|++|+.... ++.
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp~~~~~vl~- 75 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVKPDLAGKVLL- 75 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeCHHHHHHHHH-
Confidence 3589999999999999999998772 488898876542 222 3466777889999999953222 232
Q ss_pred HHHhcCCCCcEEEecCCCChhhchhh
Q psy16115 181 EHMDKMKNGCVVCNMGHSNTEIDVNS 206 (258)
Q Consensus 181 ~~l~~~k~g~~ivnvg~~~~~~~~~~ 206 (258)
+.-..++++.++.+++.-+.+..-..
T Consensus 76 ~i~~~l~~~~iIS~~aGi~~~~l~~~ 101 (260)
T PTZ00431 76 EIKPYLGSKLLISICGGLNLKTLEEM 101 (260)
T ss_pred HHHhhccCCEEEEEeCCccHHHHHHH
Confidence 22223444444444443354443333
No 319
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=97.38 E-value=0.0008 Score=59.83 Aligned_cols=88 Identities=24% Similarity=0.203 Sum_probs=68.4
Q ss_pred CCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc----CHH-HHH-----HhCCeeeeccCcccc
Q psy16115 109 GKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV----KLN-EVI-----RTVDIVVTATGNKNV 177 (258)
Q Consensus 109 g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~----~l~-e~~-----~~aDvvi~~~~~~~~ 177 (258)
+.+|+|.|. |.+|..+++.++..|++|++.+.++++...+.+.|.+.. +.. +.. .+.|+++.+.+.. .
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~ 225 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLKSLGASEVLDREDLLDESKKPLLKARWAGAIDTVGGD-V 225 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEcchhHHHHHHHHhcCCCccEEEECCchH-H
Confidence 579999998 999999999999999999999999888777777775321 111 111 1479999987764 4
Q ss_pred ccHHHHhcCCCCcEEEecCCC
Q psy16115 178 VTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 178 i~~~~l~~~k~g~~ivnvg~~ 198 (258)
+ .+.++.++++++++.+|..
T Consensus 226 ~-~~~~~~l~~~g~~v~~g~~ 245 (325)
T cd05280 226 L-ANLLKQTKYGGVVASCGNA 245 (325)
T ss_pred H-HHHHHhhcCCCEEEEEecC
Confidence 4 3789999999999999865
No 320
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=97.37 E-value=0.00059 Score=62.43 Aligned_cols=90 Identities=21% Similarity=0.247 Sum_probs=68.3
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCccc------CHHHHH------HhCCeeeeccCc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV------KLNEVI------RTVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~------~~aDvvi~~~~~ 174 (258)
.|.+|+|.|.|.+|+.+++.++..|++ |++.+.++.+...+.+.|+... +..+.+ ...|+++.+.+.
T Consensus 182 ~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld~~~~ 261 (363)
T cd08279 182 PGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFEAVGR 261 (363)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEEcCCC
Confidence 689999999999999999999999996 8888888777666555665311 222222 236999998875
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
...+. +.++.++++++++.+|..
T Consensus 262 ~~~~~-~~~~~l~~~G~~v~~g~~ 284 (363)
T cd08279 262 AATIR-QALAMTRKGGTAVVVGMG 284 (363)
T ss_pred hHHHH-HHHHHhhcCCeEEEEecC
Confidence 55554 778889999999998765
No 321
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=97.36 E-value=0.00056 Score=60.96 Aligned_cols=89 Identities=21% Similarity=0.331 Sum_probs=66.8
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cC---HHHHHH---hCCeeeeccCcccccc
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VK---LNEVIR---TVDIVVTATGNKNVVT 179 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~---l~e~~~---~aDvvi~~~~~~~~i~ 179 (258)
.|++++|.|. |.+|+.+++.++..|.+|+++.+++.+.......+... .+ +.+.+. ..|+++.+.+... +
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~-~- 239 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILKELGADYVIDGSKFSEDVKKLGGADVVIELVGSPT-I- 239 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCcEEEecHHHHHHHHhccCCCEEEECCChHH-H-
Confidence 6889999996 89999999999999999998888877665555555421 11 222222 4799999876554 3
Q ss_pred HHHHhcCCCCcEEEecCCC
Q psy16115 180 REHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 180 ~~~l~~~k~g~~ivnvg~~ 198 (258)
.+.++.+++++.++.+|..
T Consensus 240 ~~~~~~~~~~g~~v~~g~~ 258 (332)
T cd08259 240 EESLRSLNKGGRLVLIGNV 258 (332)
T ss_pred HHHHHHhhcCCEEEEEcCC
Confidence 3678889999999998865
No 322
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=97.36 E-value=0.00043 Score=59.11 Aligned_cols=90 Identities=13% Similarity=0.137 Sum_probs=62.9
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh-HHH-HHhCCCc----ccCHHHHHHhCCeeeeccCcccccc
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQ-ACMDGFS----VVKLNEVIRTVDIVVTATGNKNVVT 179 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~-~~~-a~~~g~~----~~~l~e~~~~aDvvi~~~~~~~~i~ 179 (258)
++.|++|+|||.|.+|..=++.+...|++|+++..+... ... +...+.. ..+.++ +..+++|+.|+..+ -+|
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~-~ln 86 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDE-ELN 86 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCH-HHH
Confidence 479999999999999999999999999999998765521 211 1112211 112223 33489998888554 466
Q ss_pred HHHHhcCCCCcEEEecCC
Q psy16115 180 REHMDKMKNGCVVCNMGH 197 (258)
Q Consensus 180 ~~~l~~~k~g~~ivnvg~ 197 (258)
+...+..++-.+++|+.-
T Consensus 87 ~~i~~~a~~~~i~vNv~D 104 (210)
T COG1648 87 ERIAKAARERRILVNVVD 104 (210)
T ss_pred HHHHHHHHHhCCceeccC
Confidence 677777777788888863
No 323
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00055 Score=63.43 Aligned_cols=87 Identities=17% Similarity=0.165 Sum_probs=60.9
Q ss_pred CEEEEEcCchHHHHHHHHHHhCC-CEEEEEeCChhhHHHHHhCC---Ccc--------cCHHHHHHhCCeeeeccCcccc
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDG---FSV--------VKLNEVIRTVDIVVTATGNKNV 177 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~a~~~g---~~~--------~~l~e~~~~aDvvi~~~~~~~~ 177 (258)
++|+|+|+|.||+.+|..|...| .+|++.||+..++.++.... .+. ..+.+++++.|+||.|..-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~-- 79 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF-- 79 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch--
Confidence 68999999999999999999998 79999999988876665442 221 23677888999999984222
Q ss_pred ccHHHHh-cCCCCcEEEecCCC
Q psy16115 178 VTREHMD-KMKNGCVVCNMGHS 198 (258)
Q Consensus 178 i~~~~l~-~~k~g~~ivnvg~~ 198 (258)
++...++ .++.|.-++|++-.
T Consensus 80 ~~~~i~ka~i~~gv~yvDts~~ 101 (389)
T COG1748 80 VDLTILKACIKTGVDYVDTSYY 101 (389)
T ss_pred hhHHHHHHHHHhCCCEEEcccC
Confidence 1112332 23555555665554
No 324
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=97.36 E-value=0.0024 Score=55.94 Aligned_cols=97 Identities=13% Similarity=0.158 Sum_probs=74.2
Q ss_pred CcccCCCEEEEEcCchHHHHHHHHHHhCCC-----------EEEEEeCC-----------hhhHHHH--HhCCCcccCHH
Q psy16115 104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-----------VIYITEID-----------PICALQA--CMDGFSVVKLN 159 (258)
Q Consensus 104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~-----------~Vi~~d~~-----------~~~~~~a--~~~g~~~~~l~ 159 (258)
+..+...+++++|+|.-|..+++.+...+. +++++|+. +.+...+ ....-...++.
T Consensus 20 g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~ 99 (254)
T cd00762 20 KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLE 99 (254)
T ss_pred CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHH
Confidence 455789999999999999999999988765 58888764 1111111 01122345899
Q ss_pred HHHH--hCCeeeeccCccccccHHHHhcCC---CCcEEEecCCCCh
Q psy16115 160 EVIR--TVDIVVTATGNKNVVTREHMDKMK---NGCVVCNMGHSNT 200 (258)
Q Consensus 160 e~~~--~aDvvi~~~~~~~~i~~~~l~~~k---~g~~ivnvg~~~~ 200 (258)
|+++ +.|++|-.++..+.++++.++.|. +..+|.=.+.+..
T Consensus 100 eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~ 145 (254)
T cd00762 100 DAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTS 145 (254)
T ss_pred HHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCC
Confidence 9999 899999999889999999999998 8888888888733
No 325
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=97.34 E-value=0.00092 Score=60.17 Aligned_cols=89 Identities=20% Similarity=0.189 Sum_probs=64.4
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCCh----hhHHHHHhCCCcc-c--------CHHHHHH-----hCCee
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDP----ICALQACMDGFSV-V--------KLNEVIR-----TVDIV 168 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~----~~~~~a~~~g~~~-~--------~l~e~~~-----~aDvv 168 (258)
+|++|+|.|. |.+|+.+++.++..|++++++..+. ++...+.+.|++. . +..+.+. ..|++
T Consensus 146 ~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~d~v 225 (341)
T cd08290 146 PGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAPGGRPKLA 225 (341)
T ss_pred CCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHcCCCceEE
Confidence 7899999986 8999999999999999977765544 3344455566532 1 2222222 36999
Q ss_pred eeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115 169 VTATGNKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 169 i~~~~~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
+.|++... +. +.++.+++++.++.+|..
T Consensus 226 ld~~g~~~-~~-~~~~~l~~~G~~v~~g~~ 253 (341)
T cd08290 226 LNCVGGKS-AT-ELARLLSPGGTMVTYGGM 253 (341)
T ss_pred EECcCcHh-HH-HHHHHhCCCCEEEEEecc
Confidence 99988754 33 577889999999999854
No 326
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=97.32 E-value=0.00081 Score=63.94 Aligned_cols=97 Identities=12% Similarity=0.195 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-----CCc-ccCHHHHHHh---CCeeeeccCcc----ccccHHHHhcC
Q psy16115 120 VGKGCCQSLKGLGCVIYITEIDPICALQACMD-----GFS-VVKLNEVIRT---VDIVVTATGNK----NVVTREHMDKM 186 (258)
Q Consensus 120 IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-----g~~-~~~l~e~~~~---aDvvi~~~~~~----~~i~~~~l~~~ 186 (258)
||..+|+.|...|.+|.+||+++.+.+...+. ++. ..+++++++. +|+|+++.... .+++ ..+..+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~-~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIE-QLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHH-HHHhcC
Confidence 68999999999999999999999887665542 343 4578888875 89999985333 3443 567788
Q ss_pred CCCcEEEecCCC---ChhhchhhhcCCCceeeee
Q psy16115 187 KNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKV 217 (258)
Q Consensus 187 k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~ 217 (258)
.+|.++||.|.. +.......+..+.+...+.
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvda 113 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGM 113 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEec
Confidence 999999999976 3334455666666655443
No 327
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.30 E-value=0.0014 Score=59.55 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=60.9
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCC-CEEEEEeCChhhHHH-HHh-------CCC----cc-cCHHHHHHhCCeeeeccC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQ-ACM-------DGF----SV-VKLNEVIRTVDIVVTATG 173 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~-a~~-------~g~----~~-~~l~e~~~~aDvvi~~~~ 173 (258)
..++|+|||+|.||..++..+...| .++.++|+++.+... +.. .+. .. .+.+ .+++||+|+++.+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVitag 82 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITAG 82 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECCC
Confidence 5679999999999999999998888 689999998765321 111 111 11 2444 7799999999863
Q ss_pred c---c------------cccc--HHHHhcCCCCcEEEecCCC
Q psy16115 174 N---K------------NVVT--REHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 174 ~---~------------~~i~--~~~l~~~k~g~~ivnvg~~ 198 (258)
. + .++. .+.++...|.+++++++.+
T Consensus 83 ~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP 124 (319)
T PTZ00117 83 VQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNP 124 (319)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence 3 2 1111 0223444678889998765
No 328
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=97.30 E-value=0.0025 Score=57.01 Aligned_cols=89 Identities=21% Similarity=0.218 Sum_probs=68.9
Q ss_pred CCEEEEEc-CchHHHHHHHHHHhCC-CEEEEEeCChhhHHHHHhCCCccc-----CHHHHH-----HhCCeeeeccCccc
Q psy16115 109 GKQVVLCG-YGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDGFSVV-----KLNEVI-----RTVDIVVTATGNKN 176 (258)
Q Consensus 109 g~~V~IiG-~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~a~~~g~~~~-----~l~e~~-----~~aDvvi~~~~~~~ 176 (258)
|.+|+|.| .|.+|+.+++.++..| ++|++++.++++...+.+.|++.. +..+.+ +..|+++.+.+...
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~d~vl~~~~~~~ 229 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKELGADHVINHHQDLAEQLEALGIEPVDYIFCLTDTDQ 229 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHhcCCcEEEeCCccHHHHHHhhCCCCCCEEEEccCcHH
Confidence 89999999 5999999999999999 899999888877766666665311 222222 24799999877655
Q ss_pred cccHHHHhcCCCCcEEEecCCC
Q psy16115 177 VVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 177 ~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.+. ..++.+++++.++++|..
T Consensus 230 ~~~-~~~~~l~~~g~~v~~g~~ 250 (336)
T cd08252 230 HWD-AMAELIAPQGHICLIVDP 250 (336)
T ss_pred HHH-HHHHHhcCCCEEEEecCC
Confidence 564 788899999999999854
No 329
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.29 E-value=0.00081 Score=56.97 Aligned_cols=90 Identities=21% Similarity=0.424 Sum_probs=59.0
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC---hhhHHHH----HhCC-----------------Ccc------
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID---PICALQA----CMDG-----------------FSV------ 155 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~---~~~~~~a----~~~g-----------------~~~------ 155 (258)
|..++|+|+|+|.+|..+|..|...|. +++++|.+ +..+... ...| .+.
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~ 98 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK 98 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence 688999999999999999999999998 69999887 2211100 0000 110
Q ss_pred ---cCHHHHHHhCCeeeeccCc---cccccHHHHhcCCCCcEEEecC
Q psy16115 156 ---VKLNEVIRTVDIVVTATGN---KNVVTREHMDKMKNGCVVCNMG 196 (258)
Q Consensus 156 ---~~l~e~~~~aDvvi~~~~~---~~~i~~~~l~~~k~g~~ivnvg 196 (258)
.++++.++++|+|+.|+.+ +..+..+....++...++...|
T Consensus 99 i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~~g 145 (200)
T TIGR02354 99 ITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAASG 145 (200)
T ss_pred CCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEEec
Confidence 1234566789999999644 3455545556666655555433
No 330
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.28 E-value=0.0018 Score=58.36 Aligned_cols=99 Identities=13% Similarity=0.032 Sum_probs=63.9
Q ss_pred CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc--------------cCHHHHHHhCCeeeeccCc
Q psy16115 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--------------VKLNEVIRTVDIVVTATGN 174 (258)
Q Consensus 109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~--------------~~l~e~~~~aDvvi~~~~~ 174 (258)
..+|+|+|+|.||..+|..|...|.+|+++.+++.. ...+.|... .+..+....+|+|++|+..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~ 82 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYE--AVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKT 82 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHH--HHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecC
Confidence 358999999999999999999999999999887632 222333211 1122234578999999754
Q ss_pred ccccc--HHHHhcCCCCcEEEecCCC--ChhhchhhhcC
Q psy16115 175 KNVVT--REHMDKMKNGCVVCNMGHS--NTEIDVNSLRT 209 (258)
Q Consensus 175 ~~~i~--~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~ 209 (258)
..... +..-..+++++.++..--| ..+.+.+.+..
T Consensus 83 ~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~ 121 (313)
T PRK06249 83 TANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPA 121 (313)
T ss_pred CChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCC
Confidence 44321 1333346778888877555 44444444433
No 331
>KOG1197|consensus
Probab=97.28 E-value=0.0025 Score=55.70 Aligned_cols=126 Identities=23% Similarity=0.265 Sum_probs=87.1
Q ss_pred CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEc-CchHHHHHH
Q psy16115 47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCG-YGEVGKGCC 125 (258)
Q Consensus 47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG-~G~IG~~~a 125 (258)
..++.++|+.++.++|+-.+ +..++. ++.....++ . -+|.+|+|-- +|-+|+.+.
T Consensus 109 ~~kv~~vpe~i~~k~aaa~l------lq~lTA----y~ll~e~y~-------------v-kpGhtVlvhaAAGGVGlll~ 164 (336)
T KOG1197|consen 109 SVKVFKVPEAITLKEAAALL------LQGLTA----YMLLFEAYN-------------V-KPGHTVLVHAAAGGVGLLLC 164 (336)
T ss_pred ceeeccCCcccCHHHHHHHH------HHHHHH----HHHHHHhcC-------------C-CCCCEEEEEeccccHHHHHH
Confidence 67888999999988876532 111111 111001111 1 2789998764 788999999
Q ss_pred HHHHhCCCEEEEEeCChhhHHHHHhCCCccc---CHHHHHH---------hCCeeeeccCccccccHHHHhcCCCCcEEE
Q psy16115 126 QSLKGLGCVIYITEIDPICALQACMDGFSVV---KLNEVIR---------TVDIVVTATGNKNVVTREHMDKMKNGCVVC 193 (258)
Q Consensus 126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~---~l~e~~~---------~aDvvi~~~~~~~~i~~~~l~~~k~g~~iv 193 (258)
|+++..|+.++..-.+.++.+.+++.|++.. +-++.++ +.|+++...|-.. + +..+..+|+.+.+|
T Consensus 165 Ql~ra~~a~tI~~asTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngKGVd~vyDsvG~dt-~-~~sl~~Lk~~G~mV 242 (336)
T KOG1197|consen 165 QLLRAVGAHTIATASTAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGKGVDAVYDSVGKDT-F-AKSLAALKPMGKMV 242 (336)
T ss_pred HHHHhcCcEEEEEeccHHHHHHHHhcCCcceeeccchhHHHHHHhccCCCCceeeeccccchh-h-HHHHHHhccCceEE
Confidence 9999999999998888888888999998732 3333332 4688888765442 3 25778899999999
Q ss_pred ecCCC
Q psy16115 194 NMGHS 198 (258)
Q Consensus 194 nvg~~ 198 (258)
..|..
T Consensus 243 SfG~a 247 (336)
T KOG1197|consen 243 SFGNA 247 (336)
T ss_pred Eeccc
Confidence 88876
No 332
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=97.28 E-value=0.0015 Score=56.29 Aligned_cols=89 Identities=19% Similarity=0.278 Sum_probs=67.9
Q ss_pred CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCC--cc-c-----CHHHHH----H--hCCeeeecc
Q psy16115 108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF--SV-V-----KLNEVI----R--TVDIVVTAT 172 (258)
Q Consensus 108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~--~~-~-----~l~e~~----~--~aDvvi~~~ 172 (258)
.|++|.|.| .|.+|+.+++.++.+|++|++.++++.+...+.+.|. +. . +..+.+ . ..|+++.+.
T Consensus 104 ~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~ 183 (288)
T smart00829 104 PGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRELGIPDDHIFSSRDLSFADEILRATGGRGVDVVLNSL 183 (288)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCChhheeeCCCccHHHHHHHHhCCCCcEEEEeCC
Confidence 789999999 6999999999999999999999988887766666665 11 1 122222 1 379999887
Q ss_pred CccccccHHHHhcCCCCcEEEecCCC
Q psy16115 173 GNKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 173 ~~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
+. ..+. ..++.+++++.++.+|..
T Consensus 184 ~~-~~~~-~~~~~l~~~g~~v~~g~~ 207 (288)
T smart00829 184 AG-EFLD-ASLRCLAPGGRFVEIGKR 207 (288)
T ss_pred CH-HHHH-HHHHhccCCcEEEEEcCc
Confidence 64 4443 678889999999999865
No 333
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=97.27 E-value=0.0016 Score=58.16 Aligned_cols=89 Identities=20% Similarity=0.236 Sum_probs=68.1
Q ss_pred CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CCCcc----c--CHHHHH-----HhCCeeeeccCc
Q psy16115 108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSV----V--KLNEVI-----RTVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~~----~--~l~e~~-----~~aDvvi~~~~~ 174 (258)
.|++|+|.| .|.+|+.+++.++..|++|++.++++.+...+.+ .|++. . +..+.+ ...|+++.|.+.
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~vi~~~g~ 224 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDNVGG 224 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceEEEEcchH
Confidence 689999999 5999999999999999999999888877766655 56531 1 122211 247999999876
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
. .+. ..++.++++++++++|..
T Consensus 225 ~-~~~-~~~~~l~~~G~~v~~g~~ 246 (329)
T cd05288 225 E-ILD-AALTLLNKGGRIALCGAI 246 (329)
T ss_pred H-HHH-HHHHhcCCCceEEEEeec
Confidence 3 444 678889999999999855
No 334
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=97.26 E-value=0.0016 Score=58.75 Aligned_cols=90 Identities=21% Similarity=0.353 Sum_probs=69.9
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc------CHHHHH------HhCCeeeeccCc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV------KLNEVI------RTVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~------~~aDvvi~~~~~ 174 (258)
.|++|+|.|.|.+|..+++.++.+|+ +|++.+.++.+.+.+.+.|++.. ++.+.+ +..|+++.|.+.
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 242 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSGA 242 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEECCCC
Confidence 78999999999999999999999999 58888877777666666665421 222222 247999998876
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
...+. ..++.+++++.+++.|..
T Consensus 243 ~~~~~-~~~~~l~~~G~~v~~g~~ 265 (341)
T PRK05396 243 PSAFR-QMLDNMNHGGRIAMLGIP 265 (341)
T ss_pred HHHHH-HHHHHHhcCCEEEEEecC
Confidence 65665 678889999999999875
No 335
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.25 E-value=0.00088 Score=60.71 Aligned_cols=84 Identities=11% Similarity=0.126 Sum_probs=57.1
Q ss_pred CEEEEEcCchHHHHHHHHHHhC-CCEEEE-EeCCh-hhHHHHHhCCC-cccCHHHHHHhCCeeeeccCccccccHHHHhc
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGL-GCVIYI-TEIDP-ICALQACMDGF-SVVKLNEVIRTVDIVVTATGNKNVVTREHMDK 185 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~-G~~Vi~-~d~~~-~~~~~a~~~g~-~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~ 185 (258)
-+|+|+|+|.||+.+++.+... ++++++ +|+++ .+.. ...+. ...+.++.+.+.|+|+.|+.+..-.. .....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~-~~~~~ 80 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIP-EQAPY 80 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHH-HHHHH
Confidence 5899999999999999999765 788654 78885 3221 11222 23456666778999999975443333 55566
Q ss_pred CCCCcEEEecC
Q psy16115 186 MKNGCVVCNMG 196 (258)
Q Consensus 186 ~k~g~~ivnvg 196 (258)
++.|.-+|+.-
T Consensus 81 L~aG~NVV~s~ 91 (324)
T TIGR01921 81 FAQFANTVDSF 91 (324)
T ss_pred HHcCCCEEECC
Confidence 77776777653
No 336
>PRK12861 malic enzyme; Reviewed
Probab=97.25 E-value=0.0015 Score=65.46 Aligned_cols=99 Identities=24% Similarity=0.302 Sum_probs=78.9
Q ss_pred CcCcccCCCEEEEEcCchHHHHHHHHHHhCCC---EEEEEeC------------ChhhHHHHHhCCCcccCHHHHHHhCC
Q psy16115 102 STDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEI------------DPICALQACMDGFSVVKLNEVIRTVD 166 (258)
Q Consensus 102 ~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~---~Vi~~d~------------~~~~~~~a~~~g~~~~~l~e~~~~aD 166 (258)
..+..+...+|++.|+|.-|..+++.+...|. +++++|+ ++.+...|... ...++.|+++++|
T Consensus 182 ~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~--~~~~L~eai~~ad 259 (764)
T PRK12861 182 VVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQET--DARTLAEVIGGAD 259 (764)
T ss_pred HhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhc--CCCCHHHHHhcCC
Confidence 44667889999999999999999999999998 5899883 22233334332 3358999999999
Q ss_pred eeeeccCccccccHHHHhcCCCCcEEEecCCCChhhc
Q psy16115 167 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEID 203 (258)
Q Consensus 167 vvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~ 203 (258)
+++-+++ .++++++.++.|.+..+|.-.+.+..|+.
T Consensus 260 vliG~S~-~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~ 295 (764)
T PRK12861 260 VFLGLSA-GGVLKAEMLKAMAARPLILALANPTPEIF 295 (764)
T ss_pred EEEEcCC-CCCCCHHHHHHhccCCEEEECCCCCccCC
Confidence 9988885 89999999999999999988888744443
No 337
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.25 E-value=0.0021 Score=61.39 Aligned_cols=89 Identities=15% Similarity=0.109 Sum_probs=62.1
Q ss_pred CEEEEEcCchHHHHHHHHHHhC--CCEEEEEeCChhhHHHHHhCC-------------------Ccc-cCHHHHHHhCCe
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGL--GCVIYITEIDPICALQACMDG-------------------FSV-VKLNEVIRTVDI 167 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~--G~~Vi~~d~~~~~~~~a~~~g-------------------~~~-~~l~e~~~~aDv 167 (258)
.+|+|+|+|.+|..+|..|... |.+|+++|.++.+.......+ ... .+.++.++.+|+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 4799999999999999999977 478999999988765432211 111 234566788999
Q ss_pred eeeccCcccc---------cc--------HHHHhcCCCCcEEEecCCC
Q psy16115 168 VVTATGNKNV---------VT--------REHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 168 vi~~~~~~~~---------i~--------~~~l~~~k~g~~ivnvg~~ 198 (258)
+|+|.+|+-- .+ .+.-+.++++.++|.-+..
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STv 129 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCC
Confidence 9999765531 11 1123456889998876654
No 338
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=97.23 E-value=0.002 Score=58.24 Aligned_cols=90 Identities=24% Similarity=0.393 Sum_probs=69.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-c-----CHHHH---HH--hCCeeeeccCcc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-V-----KLNEV---IR--TVDIVVTATGNK 175 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~-----~l~e~---~~--~aDvvi~~~~~~ 175 (258)
+|++|+|.|.|.+|+.+++.++.+|. +|++.+.++.+...+.+.|.+. . ++..+ .. ..|+++.+.+..
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g~~ 242 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSGNP 242 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCCCH
Confidence 78999999999999999999999999 6888877777766666666532 1 22211 11 479999998776
Q ss_pred ccccHHHHhcCCCCcEEEecCCC
Q psy16115 176 NVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 176 ~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
..+. +.++.+++++.++.+|..
T Consensus 243 ~~~~-~~~~~l~~~G~~v~~g~~ 264 (341)
T cd05281 243 KAIE-QGLKALTPGGRVSILGLP 264 (341)
T ss_pred HHHH-HHHHHhccCCEEEEEccC
Confidence 6665 778889999999998865
No 339
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.22 E-value=0.0019 Score=58.66 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=48.0
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHH-HHHh-------CCC----cc-cCHHHHHHhCCeeeecc
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QACM-------DGF----SV-VKLNEVIRTVDIVVTAT 172 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~-~a~~-------~g~----~~-~~l~e~~~~aDvvi~~~ 172 (258)
+..++|+|||+|.+|..+|..+...|. +++++|+++.... .+.. .+. .. .+. +.+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 355899999999999999999988885 8999999987532 1110 111 11 244 5678999999975
Q ss_pred C
Q psy16115 173 G 173 (258)
Q Consensus 173 ~ 173 (258)
+
T Consensus 83 g 83 (321)
T PTZ00082 83 G 83 (321)
T ss_pred C
Confidence 3
No 340
>PRK04148 hypothetical protein; Provisional
Probab=97.22 E-value=0.0012 Score=52.26 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=54.9
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHHHhCCeeeeccCccccc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVIRTVDIVVTATGNKNVV 178 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~~aDvvi~~~~~~~~i 178 (258)
+++++++||+| -|..+|+.|...|.+|+++|.++...+.+++.+..+. .-.+..+++|+|...-..+.+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~ 91 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQ 91 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHH
Confidence 56899999999 8999999999999999999999998877777665421 2346677889988874444444
No 341
>PRK12862 malic enzyme; Reviewed
Probab=97.22 E-value=0.0019 Score=64.92 Aligned_cols=99 Identities=24% Similarity=0.319 Sum_probs=79.0
Q ss_pred CcCcccCCCEEEEEcCchHHHHHHHHHHhCCC---EEEEEeCC------------hhhHHHHHhCCCcccCHHHHHHhCC
Q psy16115 102 STDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEID------------PICALQACMDGFSVVKLNEVIRTVD 166 (258)
Q Consensus 102 ~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~---~Vi~~d~~------------~~~~~~a~~~g~~~~~l~e~~~~aD 166 (258)
..+..+...++++.|+|.-|..+++++...|. +++++|+. +.+...+... ...++.|+++++|
T Consensus 186 ~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~--~~~~l~e~~~~~~ 263 (763)
T PRK12862 186 LVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKT--DARTLAEVIEGAD 263 (763)
T ss_pred HhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhc--ccCCHHHHHcCCC
Confidence 34567889999999999999999999999998 58899843 2222333332 3358999999999
Q ss_pred eeeeccCccccccHHHHhcCCCCcEEEecCCCChhhc
Q psy16115 167 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEID 203 (258)
Q Consensus 167 vvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~ 203 (258)
+++-+++ .+.++++.++.|.+..+|.-.+.+..|..
T Consensus 264 v~iG~s~-~g~~~~~~v~~M~~~piifalsNP~~E~~ 299 (763)
T PRK12862 264 VFLGLSA-AGVLKPEMVKKMAPRPLIFALANPTPEIL 299 (763)
T ss_pred EEEEcCC-CCCCCHHHHHHhccCCEEEeCCCCcccCC
Confidence 9999887 89999999999999999988888744443
No 342
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.21 E-value=0.002 Score=58.38 Aligned_cols=90 Identities=19% Similarity=0.161 Sum_probs=60.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHhC--CC------c-ccCHHHHHHhCCeeeeccCcc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACMD--GF------S-VVKLNEVIRTVDIVVTATGNK 175 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~~--g~------~-~~~l~e~~~~aDvvi~~~~~~ 175 (258)
.+++|+|||+|.||..+|..+...|. ++.++|++..++.. +.+. .. . ..+..+.+++||+|+.+.|.+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~ 84 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP 84 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence 67899999999999999999998886 69999998765421 1111 11 1 112335588999999985432
Q ss_pred c---------------cccHHHH---hcCCCCcEEEecCCC
Q psy16115 176 N---------------VVTREHM---DKMKNGCVVCNMGHS 198 (258)
Q Consensus 176 ~---------------~i~~~~l---~~~k~g~~ivnvg~~ 198 (258)
. ++. +.. ....+.+++++++-+
T Consensus 85 ~k~g~~R~dll~~N~~i~~-~i~~~i~~~~~~~~vivvsNP 124 (315)
T PRK00066 85 QKPGETRLDLVEKNLKIFK-SIVGEVMASGFDGIFLVASNP 124 (315)
T ss_pred CCCCCCHHHHHHHHHHHHH-HHHHHHHHhCCCeEEEEccCc
Confidence 1 121 222 223478899999865
No 343
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=97.21 E-value=0.0026 Score=55.67 Aligned_cols=89 Identities=24% Similarity=0.266 Sum_probs=69.0
Q ss_pred CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHH----H--hCCeeeeccCc
Q psy16115 108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVI----R--TVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~----~--~aDvvi~~~~~ 174 (258)
+|++|+|.| .|.+|+.+++.++..|++|++.+.++.+...+.+.|++.. +..+.+ . ..|+++.|.+.
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~ 215 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYDGVGK 215 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEECCCc
Confidence 789999999 6999999999999999999999888887776666665321 121212 1 37999998765
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
. .+. ..++.+++++.++.+|..
T Consensus 216 ~-~~~-~~~~~l~~~g~~v~~g~~ 237 (320)
T cd05286 216 D-TFE-GSLDSLRPRGTLVSFGNA 237 (320)
T ss_pred H-hHH-HHHHhhccCcEEEEEecC
Confidence 3 444 788999999999999875
No 344
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.21 E-value=0.0019 Score=58.45 Aligned_cols=87 Identities=10% Similarity=0.173 Sum_probs=58.7
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC--CCc-------------ccCHHHHH-HhCCeeeeccCc
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD--GFS-------------VVKLNEVI-RTVDIVVTATGN 174 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~--g~~-------------~~~l~e~~-~~aDvvi~~~~~ 174 (258)
+|+|+|+|.+|..++..|...|.+|.++++++...+...+. +.. ..++++.+ ..+|++++++..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 59999999999999999999999999999987654332221 111 12455555 478999999644
Q ss_pred cc---cccHHHHh-cCCCCcEEEecCCC
Q psy16115 175 KN---VVTREHMD-KMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~---~i~~~~l~-~~k~g~~ivnvg~~ 198 (258)
.. ++. +.-. .++++..++....|
T Consensus 82 ~~~~~~l~-~l~~~~l~~~~~vv~~~nG 108 (326)
T PRK14620 82 QQLRTICQ-QLQDCHLKKNTPILICSKG 108 (326)
T ss_pred HHHHHHHH-HHHHhcCCCCCEEEEEEcC
Confidence 43 332 3333 45666666666555
No 345
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.20 E-value=0.0028 Score=56.69 Aligned_cols=105 Identities=19% Similarity=0.164 Sum_probs=65.7
Q ss_pred CcccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChh---hHHHH-HhCC------CcccCHH------HHHHhCC
Q psy16115 104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPI---CALQA-CMDG------FSVVKLN------EVIRTVD 166 (258)
Q Consensus 104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~---~~~~a-~~~g------~~~~~l~------e~~~~aD 166 (258)
+.++.|++++|+|+|-.+++++..+...|+ +|++++|++. +.+.. ...+ ....+++ +.+.++|
T Consensus 119 ~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aD 198 (288)
T PRK12749 119 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD 198 (288)
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCC
Confidence 445789999999999999999999988997 6999999853 33221 1111 1122332 2345789
Q ss_pred eeeecc--CccccccH---HHHhcCCCCcEEEecCCC-Chhhchhhhc
Q psy16115 167 IVVTAT--GNKNVVTR---EHMDKMKNGCVVCNMGHS-NTEIDVNSLR 208 (258)
Q Consensus 167 vvi~~~--~~~~~i~~---~~l~~~k~g~~ivnvg~~-~~~~~~~~l~ 208 (258)
+||.|+ |.....+. ...+.++++.++.|+--. .+..++.+-+
T Consensus 199 ivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~ 246 (288)
T PRK12749 199 ILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQ 246 (288)
T ss_pred EEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCccCHHHHHHH
Confidence 999986 22111110 112446788889888655 3344444433
No 346
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.18 E-value=0.0012 Score=55.88 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=32.8
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID 141 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~ 141 (258)
+.+++|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 689999999999999999999999998 79999877
No 347
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.17 E-value=0.0025 Score=48.45 Aligned_cols=83 Identities=22% Similarity=0.352 Sum_probs=55.9
Q ss_pred EEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-----CHHHH----HHhCCeeeeccCccc--cccH
Q psy16115 112 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----KLNEV----IRTVDIVVTATGNKN--VVTR 180 (258)
Q Consensus 112 V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-----~l~e~----~~~aDvvi~~~~~~~--~i~~ 180 (258)
|.|+|+|.+|+.+++.|+..+.+|+++|.++.+.+.+.+.|+... +.+.+ ++++|.++.+++... +.-.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~ 80 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA 80 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence 679999999999999999977799999999998888888876532 22222 346788888765442 1112
Q ss_pred HHHhcCCCCcEEEe
Q psy16115 181 EHMDKMKNGCVVCN 194 (258)
Q Consensus 181 ~~l~~~k~g~~ivn 194 (258)
..++.+-+...++-
T Consensus 81 ~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 81 LLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHTTTSEEEE
T ss_pred HHHHHHCCCCeEEE
Confidence 33444445445543
No 348
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.17 E-value=0.0012 Score=61.98 Aligned_cols=67 Identities=22% Similarity=0.194 Sum_probs=46.8
Q ss_pred CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCcc
Q psy16115 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNK 175 (258)
Q Consensus 109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~ 175 (258)
.++|+|+|.|.+|+++|+.|+..|++|+++|+++............ ....+....++|+++.+++.+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence 4789999999999999999999999999999876543211000000 112333446789999986554
No 349
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=97.15 E-value=0.0029 Score=56.14 Aligned_cols=89 Identities=19% Similarity=0.140 Sum_probs=68.2
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHH----HH--HhCCeeeeccCc
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNE----VI--RTVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e----~~--~~aDvvi~~~~~ 174 (258)
.|.+|+|.|. |.+|+.+++.++..|+++++...++.+...+.+.|++.. +..+ .. +..|+++.|.+.
T Consensus 138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~ 217 (323)
T cd05282 138 PGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKALGADEVIDSSPEDLAQRVKEATGGAGARLALDAVGG 217 (323)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHhcCCCEEecccchhHHHHHHHHhcCCCceEEEECCCC
Confidence 7899999997 789999999999999999888877777666666665321 1111 11 247999999887
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
... . ..++.++++++++++|..
T Consensus 218 ~~~-~-~~~~~l~~~g~~v~~g~~ 239 (323)
T cd05282 218 ESA-T-RLARSLRPGGTLVNYGLL 239 (323)
T ss_pred HHH-H-HHHHhhCCCCEEEEEccC
Confidence 653 2 668889999999998865
No 350
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.14 E-value=0.0037 Score=55.92 Aligned_cols=104 Identities=22% Similarity=0.158 Sum_probs=65.5
Q ss_pred cccCCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCCh---hhHHHHHh-C---C----CcccC------HHHHHHhCC
Q psy16115 105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDP---ICALQACM-D---G----FSVVK------LNEVIRTVD 166 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~---~~~~~a~~-~---g----~~~~~------l~e~~~~aD 166 (258)
..+.+++++|+|.|-+|++++..|...|++ |++++|++ ++.+...+ . + ....+ +++.+..+|
T Consensus 122 ~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~D 201 (289)
T PRK12548 122 VDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSD 201 (289)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCC
Confidence 346799999999999999999999999996 99999986 44332111 1 1 11112 233455789
Q ss_pred eeeecc--CccccccH---HHHhcCCCCcEEEecCCC-Chhhchhhhc
Q psy16115 167 IVVTAT--GNKNVVTR---EHMDKMKNGCVVCNMGHS-NTEIDVNSLR 208 (258)
Q Consensus 167 vvi~~~--~~~~~i~~---~~l~~~k~g~~ivnvg~~-~~~~~~~~l~ 208 (258)
++|.|| |...-.+. .....++++.++.|+--. .+..++..-+
T Consensus 202 ilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~ 249 (289)
T PRK12548 202 ILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKKTKLLEDAE 249 (289)
T ss_pred EEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCCCHHHHHHH
Confidence 999986 22111110 013457888899998765 3344444333
No 351
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.14 E-value=0.0016 Score=59.62 Aligned_cols=87 Identities=17% Similarity=0.137 Sum_probs=60.8
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC---------CCc-------ccCHHHHHHhCCeeeeccC
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD---------GFS-------VVKLNEVIRTVDIVVTATG 173 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~---------g~~-------~~~l~e~~~~aDvvi~~~~ 173 (258)
.+|+|+|+|.+|..+|..|...| .++.+.++++..+...+. +.. ..++.+.++.+|+|++++.
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 57999999999999999999988 677787877665433322 111 1256677889999999964
Q ss_pred cc---ccccHHHHhcCCCCcEEEecCCC
Q psy16115 174 NK---NVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 174 ~~---~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
+. .++. +.-..++++..++.+.-|
T Consensus 87 s~~~~~vl~-~i~~~l~~~~~vIsl~kG 113 (341)
T PRK12439 87 SHGFRGVLT-ELAKELRPWVPVVSLVKG 113 (341)
T ss_pred HHHHHHHHH-HHHhhcCCCCEEEEEEeC
Confidence 33 2332 333456777777777666
No 352
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=97.13 E-value=0.0011 Score=57.13 Aligned_cols=89 Identities=13% Similarity=0.147 Sum_probs=58.8
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHH-H-HHhCCCccc--C-HHHHHHhCCeeeeccCccccccHH
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL-Q-ACMDGFSVV--K-LNEVIRTVDIVVTATGNKNVVTRE 181 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~-~-a~~~g~~~~--~-l~e~~~~aDvvi~~~~~~~~i~~~ 181 (258)
++|++|+|||.|.+|..=++.|..+|++|+++.+...... . +....++.. + -.+.+.++++|+.||..+ -+|..
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~-~vN~~ 101 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDE-KLNNK 101 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCH-HHHHH
Confidence 5799999999999999999999999999999866543221 1 211122211 1 123467889999998544 55555
Q ss_pred HHhcCCCCcEEEecC
Q psy16115 182 HMDKMKNGCVVCNMG 196 (258)
Q Consensus 182 ~l~~~k~g~~ivnvg 196 (258)
..+..+....++|+.
T Consensus 102 I~~~a~~~~~lvn~v 116 (223)
T PRK05562 102 IRKHCDRLYKLYIDC 116 (223)
T ss_pred HHHHHHHcCCeEEEc
Confidence 555555545666654
No 353
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.11 E-value=0.002 Score=60.78 Aligned_cols=67 Identities=28% Similarity=0.386 Sum_probs=49.4
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh-HH----HHHhCCCccc---CHHHHHHhCCeeeeccC
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-AL----QACMDGFSVV---KLNEVIRTVDIVVTATG 173 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~-~~----~a~~~g~~~~---~l~e~~~~aDvvi~~~~ 173 (258)
+.+++|+|+|.|.+|+.+|+.|...|++|+++|++... .. ...+.|.... ..++.....|+|+.+++
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g 77 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPG 77 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCC
Confidence 57899999999999999999999999999999997532 21 1122344321 23345567999999764
No 354
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=97.10 E-value=0.0033 Score=56.18 Aligned_cols=89 Identities=22% Similarity=0.230 Sum_probs=67.9
Q ss_pred CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHH-----HhCCeeeeccCcc
Q psy16115 108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVI-----RTVDIVVTATGNK 175 (258)
Q Consensus 108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~-----~~aDvvi~~~~~~ 175 (258)
+|++++|.| .|.+|+.+++.++..|++|++.++++.+...+.+.|.+. .+..+.+ +..|+++.+.+.
T Consensus 139 ~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vd~v~~~~g~- 217 (329)
T cd08250 139 SGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEYPKGVDVVYESVGG- 217 (329)
T ss_pred CCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHcCCceEEeCCCccHHHHHHHhcCCCCeEEEECCcH-
Confidence 789999999 589999999999999999999888877766666666521 1222222 247999998875
Q ss_pred ccccHHHHhcCCCCcEEEecCCC
Q psy16115 176 NVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 176 ~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
..+ .+.++.+++++.++++|..
T Consensus 218 ~~~-~~~~~~l~~~g~~v~~g~~ 239 (329)
T cd08250 218 EMF-DTCVDNLALKGRLIVIGFI 239 (329)
T ss_pred HHH-HHHHHHhccCCeEEEEecc
Confidence 344 3788899999999999864
No 355
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.10 E-value=0.0015 Score=62.12 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=49.9
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhH-----HHHHhCCCccc---CHHHHHHhCCeeeeccC
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA-----LQACMDGFSVV---KLNEVIRTVDIVVTATG 173 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~-----~~a~~~g~~~~---~l~e~~~~aDvvi~~~~ 173 (258)
+.+++|+|+|+|..|+++|+.|+..|++|.++|.++... ......|+... ...+.+.++|+|+..++
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spg 86 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPS 86 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCC
Confidence 478999999999999999999999999999999765311 12334565432 22455678999988753
No 356
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.0027 Score=58.50 Aligned_cols=107 Identities=10% Similarity=0.181 Sum_probs=79.4
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCC------cccCHHHHHH---hCCeeeec--cCc--cc
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF------SVVKLNEVIR---TVDIVVTA--TGN--KN 176 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~------~~~~l~e~~~---~aDvvi~~--~~~--~~ 176 (258)
..+|+||+|-||+.+|......|.+|.+|+|++++.++..+... ...+++|.+. .---|++. +|+ ..
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 57999999999999999999999999999999988665433321 1346777654 33444443 455 45
Q ss_pred cccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCceeeee
Q psy16115 177 VVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKV 217 (258)
Q Consensus 177 ~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~ 217 (258)
.|+ +.+..|.+|-++||-|.. |..-..+.|..+.|...+.
T Consensus 84 ~I~-~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~ 126 (473)
T COG0362 84 VIE-QLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGM 126 (473)
T ss_pred HHH-HHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEec
Confidence 664 777889999999999987 5555667888887766554
No 357
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=97.09 E-value=0.0026 Score=59.08 Aligned_cols=105 Identities=16% Similarity=0.269 Sum_probs=77.1
Q ss_pred cCcCcccCCCEEEEEcCchHHHHHHHHHHhCCC---EEEEEeCCh----hh---------HHHHH-hCCCcccCHHHHHH
Q psy16115 101 RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEIDP----IC---------ALQAC-MDGFSVVKLNEVIR 163 (258)
Q Consensus 101 ~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~---~Vi~~d~~~----~~---------~~~a~-~~g~~~~~l~e~~~ 163 (258)
+..+..++..+|++.|+|.-|..+++.+++.|+ +|+++|+.- .+ ...+. ..+.... ++.+.
T Consensus 191 k~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~--~~~~~ 268 (432)
T COG0281 191 KLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL--DLALA 268 (432)
T ss_pred HHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc--ccccc
Confidence 345677899999999999999999999999998 499998741 11 11111 1111111 44677
Q ss_pred hCCeeeeccCccccccHHHHhcCCCCcEEEecCCCChhhchhhhc
Q psy16115 164 TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 208 (258)
Q Consensus 164 ~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~ 208 (258)
++|+++-+++. +.+.++.++.|.++.++.-.+.+..|+..+.+.
T Consensus 269 ~adv~iG~S~~-G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~ 312 (432)
T COG0281 269 GADVLIGVSGV-GAFTEEMVKEMAKHPIIFALANPTPEITPEDAK 312 (432)
T ss_pred CCCEEEEcCCC-CCcCHHHHHHhccCCEEeecCCCCccCCHHHHh
Confidence 89999999877 999999999999998888888776666555443
No 358
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.09 E-value=0.0023 Score=57.44 Aligned_cols=63 Identities=25% Similarity=0.272 Sum_probs=45.6
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHH-HHh--C-----CC--c--c-cCHHHHHHhCCeeeeccC
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACM--D-----GF--S--V-VKLNEVIRTVDIVVTATG 173 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~-a~~--~-----g~--~--~-~~l~e~~~~aDvvi~~~~ 173 (258)
++|+|||+|.+|..+|..+...|. +|+++|++++++.. +.. . +. . . .+. +.+++||+|+++.+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 589999999999999999988764 89999998765432 111 1 11 1 1 234 45789999999854
No 359
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=97.09 E-value=0.0031 Score=56.34 Aligned_cols=89 Identities=21% Similarity=0.256 Sum_probs=68.2
Q ss_pred CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCc
Q psy16115 108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~ 174 (258)
.|.+|+|.| .|.+|+.+++.++..|++|++++.++.+...+.+.|.+. .+..+.+. ..|+++.|.+.
T Consensus 140 ~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~ 219 (327)
T PRK10754 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAKKAGAWQVINYREENIVERVKEITGGKKVRVVYDSVGK 219 (327)
T ss_pred CCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEEcCCCCcHHHHHHHHcCCCCeEEEEECCcH
Confidence 789999996 789999999999999999999888887776666666531 12222222 36999998876
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
. .+. +.++.+++++.++.+|..
T Consensus 220 ~-~~~-~~~~~l~~~g~~v~~g~~ 241 (327)
T PRK10754 220 D-TWE-ASLDCLQRRGLMVSFGNA 241 (327)
T ss_pred H-HHH-HHHHHhccCCEEEEEccC
Confidence 3 343 678899999999999855
No 360
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=97.08 E-value=0.0014 Score=52.86 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=67.7
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec--cCccccccHHHHh
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA--TGNKNVVTREHMD 184 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~--~~~~~~i~~~~l~ 184 (258)
.|++|++||+ .+ +++.++..+.++.++|+++..... ...+......++++.+||+++.+ +=..+.++ +.++
T Consensus 10 ~~~~V~~VG~f~P----~~~~l~~~~~~v~v~d~~~~~~~~-~~~~~~~~~~~~~l~~aD~viiTGsTlvN~Ti~-~iL~ 83 (147)
T PF04016_consen 10 PGDKVGMVGYFQP----LVEKLKERGAEVRVFDLNPDNIGE-EPGDVPDEDAEEILPWADVVIITGSTLVNGTID-DILE 83 (147)
T ss_dssp TTSEEEEES--HC----CHHHHCCCCSEEEEEESSGGG--S-SCT-EEGGGHHHHGGG-SEEEEECHHCCTTTHH-HHHH
T ss_pred CCCEEEEEcCcHH----HHHHHhcCCCCEEEEECCCCCCCC-CCCcCCHHHHHHHHccCCEEEEEeeeeecCCHH-HHHH
Confidence 8999999994 44 577777788899999999965321 11123345678889999999886 33446775 7888
Q ss_pred cCCCCcEEEecCCCChhhchhhhcCCCceeee
Q psy16115 185 KMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEK 216 (258)
Q Consensus 185 ~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~ 216 (258)
..+++..++-+|.. .....+.+....++..+
T Consensus 84 ~~~~~~~vil~GpS-~~~~P~~l~~~Gv~~v~ 114 (147)
T PF04016_consen 84 LARNAREVILYGPS-APLHPEALFDYGVTYVG 114 (147)
T ss_dssp HTTTSSEEEEESCC-GGS-GGGGCCTT-SEEE
T ss_pred hCccCCeEEEEecC-chhhHHHHHhCCCCEEE
Confidence 88989999998865 22223355555565443
No 361
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=97.08 E-value=0.003 Score=63.30 Aligned_cols=100 Identities=20% Similarity=0.283 Sum_probs=78.3
Q ss_pred CcCcccCCCEEEEEcCchHHHHHHHHHHhCCC---EEEEEeCC------------hhhHHHHHhCCCcccCHHHHHHhCC
Q psy16115 102 STDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEID------------PICALQACMDGFSVVKLNEVIRTVD 166 (258)
Q Consensus 102 ~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~---~Vi~~d~~------------~~~~~~a~~~g~~~~~l~e~~~~aD 166 (258)
..+..+...++++.|+|.-|..+++++...|. +++++|+. +.+...+.. -...++.++++++|
T Consensus 178 ~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~--~~~~~l~~~i~~~~ 255 (752)
T PRK07232 178 LVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVD--TDARTLAEAIEGAD 255 (752)
T ss_pred HhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhcc--CCCCCHHHHHcCCC
Confidence 44667889999999999999999999999998 58888853 112222222 22348999999999
Q ss_pred eeeeccCccccccHHHHhcCCCCcEEEecCCCChhhch
Q psy16115 167 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV 204 (258)
Q Consensus 167 vvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~ 204 (258)
+++-.++ .+.++++.++.|.+..++.-.+.+..|...
T Consensus 256 v~iG~s~-~g~~~~~~v~~M~~~piifalsNP~~E~~p 292 (752)
T PRK07232 256 VFLGLSA-AGVLTPEMVKSMADNPIIFALANPDPEITP 292 (752)
T ss_pred EEEEcCC-CCCCCHHHHHHhccCCEEEecCCCCccCCH
Confidence 9998876 899999999999999999888887545433
No 362
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.07 E-value=0.0015 Score=57.42 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=45.5
Q ss_pred EEEEEcC-chHHHHHHHHHHhC-CCEE-EEEeCChhhHHHHHhCCC-cccCHHHHHHhCCeeeecc
Q psy16115 111 QVVLCGY-GEVGKGCCQSLKGL-GCVI-YITEIDPICALQACMDGF-SVVKLNEVIRTVDIVVTAT 172 (258)
Q Consensus 111 ~V~IiG~-G~IG~~~a~~l~~~-G~~V-i~~d~~~~~~~~a~~~g~-~~~~l~e~~~~aDvvi~~~ 172 (258)
+|+|+|+ |.||+.+++.+... ++++ .++|+++.+.......++ .+.+++++++.+|+|+.++
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t 68 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFT 68 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECC
Confidence 7999998 99999999998864 6774 458888765432222233 2357888888899999876
No 363
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.07 E-value=0.0024 Score=58.46 Aligned_cols=87 Identities=22% Similarity=0.286 Sum_probs=54.7
Q ss_pred EEEEEcCchHHHHHHHHHHhC-CCEEEE-EeCChhhHHH-HHhCCCc------------------c-cCHHHHHHhCCee
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGL-GCVIYI-TEIDPICALQ-ACMDGFS------------------V-VKLNEVIRTVDIV 168 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~-G~~Vi~-~d~~~~~~~~-a~~~g~~------------------~-~~l~e~~~~aDvv 168 (258)
+|+|+|+|.||+.+++.+... ++++++ +|+++..... +...|+. . .++++++.++|+|
T Consensus 3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDVV 82 (341)
T PRK04207 3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADIV 82 (341)
T ss_pred EEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCEE
Confidence 799999999999999988764 577555 5655533321 2222211 1 2466777789999
Q ss_pred eeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115 169 VTATGNKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 169 i~~~~~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
+.|++...... ..-...+.|..+|.-|..
T Consensus 83 IdaT~~~~~~e-~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 83 VDATPGGVGAK-NKELYEKAGVKAIFQGGE 111 (341)
T ss_pred EECCCchhhHH-HHHHHHHCCCEEEEcCCC
Confidence 99986553332 222334556666666553
No 364
>PRK10637 cysG siroheme synthase; Provisional
Probab=97.07 E-value=0.0014 Score=62.32 Aligned_cols=92 Identities=16% Similarity=0.266 Sum_probs=64.0
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHH-HHHhCC-Cccc---CHHHHHHhCCeeeeccCccccccH
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL-QACMDG-FSVV---KLNEVIRTVDIVVTATGNKNVVTR 180 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~-~a~~~g-~~~~---~l~e~~~~aDvvi~~~~~~~~i~~ 180 (258)
++.|++|+|||.|.++..=++.|..+|++|+++.+.-.... .....| +... -..+.++++++|+.|+..+ -+|.
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~-~~n~ 87 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD-AVNQ 87 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH-HHhH
Confidence 57999999999999999999999999999999855432211 111222 2211 1235567899999988555 4665
Q ss_pred HHHhcCCCCcEEEecCCC
Q psy16115 181 EHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 181 ~~l~~~k~g~~ivnvg~~ 198 (258)
+..+..+...+++|+.-.
T Consensus 88 ~i~~~a~~~~~lvN~~d~ 105 (457)
T PRK10637 88 RVSEAAEARRIFCNVVDA 105 (457)
T ss_pred HHHHHHHHcCcEEEECCC
Confidence 666667777788887744
No 365
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.07 E-value=0.0025 Score=63.08 Aligned_cols=68 Identities=19% Similarity=0.332 Sum_probs=52.1
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh---------------------hHHHHHhCCCcc---------cC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI---------------------CALQACMDGFSV---------VK 157 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~---------------------~~~~a~~~g~~~---------~~ 157 (258)
.|++|+|||.|+.|+..|..|+..|.+|+++++.+. +.......|++. .+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~ 388 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDIT 388 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCC
Confidence 589999999999999999999999999999987753 222334455432 24
Q ss_pred HHHHHHhCCeeeeccCcc
Q psy16115 158 LNEVIRTVDIVVTATGNK 175 (258)
Q Consensus 158 l~e~~~~aDvvi~~~~~~ 175 (258)
++++....|.|++++|..
T Consensus 389 ~~~l~~~~DaV~latGa~ 406 (639)
T PRK12809 389 FSDLTSEYDAVFIGVGTY 406 (639)
T ss_pred HHHHHhcCCEEEEeCCCC
Confidence 556666799999997654
No 366
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.05 E-value=0.0024 Score=57.41 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=61.4
Q ss_pred CCEEEEEcCchHHHHHHHHHHhC-CCE-EEEEeCChhh--HHHHHhCCCcc--cCHHHHHH-----hCCeeeeccCcccc
Q psy16115 109 GKQVVLCGYGEVGKGCCQSLKGL-GCV-IYITEIDPIC--ALQACMDGFSV--VKLNEVIR-----TVDIVVTATGNKNV 177 (258)
Q Consensus 109 g~~V~IiG~G~IG~~~a~~l~~~-G~~-Vi~~d~~~~~--~~~a~~~g~~~--~~l~e~~~-----~aDvvi~~~~~~~~ 177 (258)
.-+++|||.|.||...+..+... +.+ +.++|+++++ +..+.+.|+.. .+.++++. +.|+|+.++++..-
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 46899999999999866666644 567 4568888754 34566777753 47888885 47889999865533
Q ss_pred ccHHHHhcCCCCcEEEecCCC
Q psy16115 178 VTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 178 i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.. ...+..+.|..+++-...
T Consensus 84 ~e-~a~~a~eaGk~VID~sPA 103 (302)
T PRK08300 84 VR-HAAKLREAGIRAIDLTPA 103 (302)
T ss_pred HH-HHHHHHHcCCeEEECCcc
Confidence 22 334445778888876643
No 367
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.04 E-value=0.0025 Score=63.21 Aligned_cols=68 Identities=21% Similarity=0.353 Sum_probs=51.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh---------------------hHHHHHhCCCcc---------cC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI---------------------CALQACMDGFSV---------VK 157 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~---------------------~~~~a~~~g~~~---------~~ 157 (258)
.|++|+|||.|+.|+..|..|+..|.+|+++|+.+. +...+.+.|++. .+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~ 405 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDIS 405 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCC
Confidence 689999999999999999999999999999987543 122234456542 23
Q ss_pred HHHHHHhCCeeeeccCcc
Q psy16115 158 LNEVIRTVDIVVTATGNK 175 (258)
Q Consensus 158 l~e~~~~aDvvi~~~~~~ 175 (258)
++++..+.|.|++++|..
T Consensus 406 ~~~~~~~~DavilAtGa~ 423 (654)
T PRK12769 406 LESLLEDYDAVFVGVGTY 423 (654)
T ss_pred HHHHHhcCCEEEEeCCCC
Confidence 455566799999987653
No 368
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=97.04 E-value=0.0038 Score=56.42 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=67.8
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH-----hCCeeeeccCcc
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR-----TVDIVVTATGNK 175 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~-----~aDvvi~~~~~~ 175 (258)
.|++++|.|. |.+|+.+++.++.+|++|+... ++++...+.+.|++. .++.+.+. ..|+++.+.+..
T Consensus 154 ~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~d~vl~~~g~~ 232 (339)
T cd08249 154 KGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-SPKNFDLVKSLGADAVFDYHDPDVVEDIRAATGGKLRYALDCISTP 232 (339)
T ss_pred CCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-CcccHHHHHhcCCCEEEECCCchHHHHHHHhcCCCeeEEEEeeccc
Confidence 7899999997 8899999999999999988766 556666666667531 12222222 369999988775
Q ss_pred ccccHHHHhcCCC--CcEEEecCCC
Q psy16115 176 NVVTREHMDKMKN--GCVVCNMGHS 198 (258)
Q Consensus 176 ~~i~~~~l~~~k~--g~~ivnvg~~ 198 (258)
..+. +.++.+++ ++.++.+|..
T Consensus 233 ~~~~-~~~~~l~~~~~g~~v~~g~~ 256 (339)
T cd08249 233 ESAQ-LCAEALGRSGGGKLVSLLPV 256 (339)
T ss_pred hHHH-HHHHHHhccCCCEEEEecCC
Confidence 5664 78899999 9999999865
No 369
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=97.04 E-value=0.0044 Score=52.55 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=41.1
Q ss_pred cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC
Q psy16115 107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMD 151 (258)
Q Consensus 107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~ 151 (258)
+.|.||+|-|.|. ||+.+|+.+...|-+|+++.|+..++.+++..
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~ 48 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAE 48 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhc
Confidence 4799999999888 99999999999999999999999998877654
No 370
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.02 E-value=0.0023 Score=59.26 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=53.1
Q ss_pred EEEEcCchHHHHHHHHHHhCC-C-EEEEEeCChhhHHHHHh--C--CCc-----cc---CHHHHHHhCCeeeeccCcccc
Q psy16115 112 VVLCGYGEVGKGCCQSLKGLG-C-VIYITEIDPICALQACM--D--GFS-----VV---KLNEVIRTVDIVVTATGNKNV 177 (258)
Q Consensus 112 V~IiG~G~IG~~~a~~l~~~G-~-~Vi~~d~~~~~~~~a~~--~--g~~-----~~---~l~e~~~~aDvvi~~~~~~~~ 177 (258)
|+|+|+|.+|+.+++.|...+ . +|++.|++..++....+ . .+. .. ++.++++++|+|+.|.+..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-- 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-- 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG--
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc--
Confidence 689999999999999999886 4 79999999998665433 1 221 11 3667788999999986543
Q ss_pred ccHHHHhc-CCCCcEEEecC
Q psy16115 178 VTREHMDK-MKNGCVVCNMG 196 (258)
Q Consensus 178 i~~~~l~~-~k~g~~ivnvg 196 (258)
.+...++. ++.|.-.+|++
T Consensus 79 ~~~~v~~~~i~~g~~yvD~~ 98 (386)
T PF03435_consen 79 FGEPVARACIEAGVHYVDTS 98 (386)
T ss_dssp GHHHHHHHHHHHT-EEEESS
T ss_pred hhHHHHHHHHHhCCCeeccc
Confidence 22222221 34455555543
No 371
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.02 E-value=0.0019 Score=61.26 Aligned_cols=66 Identities=21% Similarity=0.327 Sum_probs=49.2
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCH-HHHHHhCCeeeecc
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL-NEVIRTVDIVVTAT 172 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l-~e~~~~aDvvi~~~ 172 (258)
+.|++|.|+|+|..|+++|+.|+..|++|.++|..+.......+.|+..... .+.+.++|+|+..+
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp 73 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSP 73 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECC
Confidence 5789999999999999999999999999999997654333333456553221 23356789998765
No 372
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.0017 Score=59.42 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=46.4
Q ss_pred CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCC---c---ccCHHHHHHhCCeeee
Q psy16115 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF---S---VVKLNEVIRTVDIVVT 170 (258)
Q Consensus 109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~---~---~~~l~e~~~~aDvvi~ 170 (258)
+++|||+|.|..|++++..++.+|.++++.|.++........... . ...+.++.+.||+|..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 479999999999999999999999999999988765432211111 1 1246777788888754
No 373
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.02 E-value=0.0031 Score=60.16 Aligned_cols=69 Identities=22% Similarity=0.378 Sum_probs=51.9
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh---------------------hHHHHHhCCCcc---------cC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI---------------------CALQACMDGFSV---------VK 157 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~---------------------~~~~a~~~g~~~---------~~ 157 (258)
.+++|+|||.|++|...|..|+..|.+|++++..+. ......+.|++. ..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~ 219 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDIS 219 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccC
Confidence 689999999999999999999999999999987642 123344556542 13
Q ss_pred HHHHHHhCCeeeeccCccc
Q psy16115 158 LNEVIRTVDIVVTATGNKN 176 (258)
Q Consensus 158 l~e~~~~aDvvi~~~~~~~ 176 (258)
+++.....|.|++++|...
T Consensus 220 ~~~~~~~~D~vilAtGa~~ 238 (467)
T TIGR01318 220 LDDLLEDYDAVFLGVGTYR 238 (467)
T ss_pred HHHHHhcCCEEEEEeCCCC
Confidence 4455557999999987653
No 374
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=97.01 E-value=0.0051 Score=59.60 Aligned_cols=112 Identities=17% Similarity=0.130 Sum_probs=69.5
Q ss_pred cccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHH-hCCCcccCHHHH---H-HhCCeeeecc--Ccccc
Q psy16115 105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSVVKLNEV---I-RTVDIVVTAT--GNKNV 177 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~-~~g~~~~~l~e~---~-~~aDvvi~~~--~~~~~ 177 (258)
.++.+++++|+|.|.+|++++..|...|++|++++++.++.+... ..+.....+++. . ..+|+++.++ |...-
T Consensus 375 ~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~ 454 (529)
T PLN02520 375 SPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPN 454 (529)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCC
Confidence 356899999999999999999999999999999999887654432 223222333332 2 2468887764 22111
Q ss_pred ccH--HHHhcCCCCcEEEecCCC-Chhhchhhh-cCCCceeee
Q psy16115 178 VTR--EHMDKMKNGCVVCNMGHS-NTEIDVNSL-RTPDLTWEK 216 (258)
Q Consensus 178 i~~--~~l~~~k~g~~ivnvg~~-~~~~~~~~l-~~~~i~~~~ 216 (258)
.+. -....++++.+++|+--. ....++... +.|.-.+.|
T Consensus 455 ~~~~pl~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~~G 497 (529)
T PLN02520 455 VDETPISKHALKHYSLVFDAVYTPKITRLLREAEESGAIIVSG 497 (529)
T ss_pred CCCCcccHhhCCCCCEEEEeccCCCcCHHHHHHHHCCCeEeCc
Confidence 110 012457788899998765 333444433 344333333
No 375
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.01 E-value=0.0014 Score=52.43 Aligned_cols=64 Identities=27% Similarity=0.235 Sum_probs=46.2
Q ss_pred EEEEEcC-chHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHhC-------CCc---ccCHHHHHHhCCeeeeccCc
Q psy16115 111 QVVLCGY-GEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACMD-------GFS---VVKLNEVIRTVDIVVTATGN 174 (258)
Q Consensus 111 ~V~IiG~-G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~~-------g~~---~~~l~e~~~~aDvvi~~~~~ 174 (258)
+|+|||+ |.+|..++..|...+. ++..+|+++.+.+. +.+. ... .....+.+++||+|+.+.|.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence 7999999 9999999999988774 69999999765432 1111 111 12456678899999998543
No 376
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=97.00 E-value=0.0032 Score=55.14 Aligned_cols=96 Identities=17% Similarity=0.262 Sum_probs=70.3
Q ss_pred CcccCCCEEEEEcCchHHHHHHHHHHhC----CC------E-EEEEeCC-----------hhhHHHHHhCCCc--ccCHH
Q psy16115 104 DVMFGGKQVVLCGYGEVGKGCCQSLKGL----GC------V-IYITEID-----------PICALQACMDGFS--VVKLN 159 (258)
Q Consensus 104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~----G~------~-Vi~~d~~-----------~~~~~~a~~~g~~--~~~l~ 159 (258)
+..|+..+++++|+|.-|..+++++... |. + ++++|++ +.+...+....-. ..++.
T Consensus 20 g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~ 99 (255)
T PF03949_consen 20 GKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLL 99 (255)
T ss_dssp TS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHH
T ss_pred CCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcccccccCHH
Confidence 4557899999999999999999999887 88 3 8999875 1122222222111 24899
Q ss_pred HHHHhC--CeeeeccCccccccHHHHhcCCC---CcEEEecCCCC
Q psy16115 160 EVIRTV--DIVVTATGNKNVVTREHMDKMKN---GCVVCNMGHSN 199 (258)
Q Consensus 160 e~~~~a--Dvvi~~~~~~~~i~~~~l~~~k~---g~~ivnvg~~~ 199 (258)
|+++++ |++|-+++..+.++++.++.|.+ ..+|.=.+.+.
T Consensus 100 eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt 144 (255)
T PF03949_consen 100 EAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPT 144 (255)
T ss_dssp HHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSC
T ss_pred HHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCC
Confidence 999988 99999999999999999999976 78888888873
No 377
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.99 E-value=0.0026 Score=60.76 Aligned_cols=66 Identities=20% Similarity=0.382 Sum_probs=49.9
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHH-HHhCCCccc---CHHHHHHhCCeeeecc
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDGFSVV---KLNEVIRTVDIVVTAT 172 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~-a~~~g~~~~---~l~e~~~~aDvvi~~~ 172 (258)
+.+++|+|+|+|..|+++++.|...|++|+++|+++....+ ..+.|+... ...+.+.++|+||..+
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Sp 82 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSP 82 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCC
Confidence 57899999999999999999999999999999987654322 233465442 2234456789998864
No 378
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.98 E-value=0.0022 Score=58.66 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=33.3
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCCh
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP 142 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~ 142 (258)
+.+++|+|+|+|.+|..+|+.|...|. +++++|.+.
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 688999999999999999999999998 799998864
No 379
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=96.98 E-value=0.0037 Score=57.31 Aligned_cols=80 Identities=14% Similarity=0.158 Sum_probs=59.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCChhh-----HHHHHhCCCcc-cCHHHHHHhCCeeeeccCccc----cccHHHHhcCCCCc
Q psy16115 121 GKGCCQSLKGLGCVIYITEIDPIC-----ALQACMDGFSV-VKLNEVIRTVDIVVTATGNKN----VVTREHMDKMKNGC 190 (258)
Q Consensus 121 G~~~a~~l~~~G~~Vi~~d~~~~~-----~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~----~i~~~~l~~~k~g~ 190 (258)
|..+|..|...|.+|+++|+++.+ .......|+.. .+..+.++++|+||+|..... ++ ......++++.
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 788899999999999999998863 23344567654 467788899999999964333 33 24556778999
Q ss_pred EEEecCCCChh
Q psy16115 191 VVCNMGHSNTE 201 (258)
Q Consensus 191 ~ivnvg~~~~~ 201 (258)
+++|++..+..
T Consensus 111 IVId~ST~~~~ 121 (342)
T PRK12557 111 VICNTCTVSPV 121 (342)
T ss_pred EEEEecCCCHH
Confidence 99999987433
No 380
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.97 E-value=0.0012 Score=51.49 Aligned_cols=82 Identities=20% Similarity=0.368 Sum_probs=50.1
Q ss_pred EEEEEcC-chHHHHHHHHHHh-CCCE-EEEEeCChhhHH-----HHH---hCCCc-ccCHHHHHHhCCeeeeccCccccc
Q psy16115 111 QVVLCGY-GEVGKGCCQSLKG-LGCV-IYITEIDPICAL-----QAC---MDGFS-VVKLNEVIRTVDIVVTATGNKNVV 178 (258)
Q Consensus 111 ~V~IiG~-G~IG~~~a~~l~~-~G~~-Vi~~d~~~~~~~-----~a~---~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i 178 (258)
+|+|+|+ |+||+.+++.+.. -|++ +-++|+.+.... ... ..++. ..++++++..+|+++..+ ++..+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~~ 80 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDAV 80 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHHh
Confidence 6999999 9999999999998 5777 555788762110 000 11222 346888898999999998 44444
Q ss_pred cHHHHhc-CCCCcEEEe
Q psy16115 179 TREHMDK-MKNGCVVCN 194 (258)
Q Consensus 179 ~~~~l~~-~k~g~~ivn 194 (258)
. +.++. ++.|.-+|-
T Consensus 81 ~-~~~~~~~~~g~~~Vi 96 (124)
T PF01113_consen 81 Y-DNLEYALKHGVPLVI 96 (124)
T ss_dssp H-HHHHHHHHHT-EEEE
T ss_pred H-HHHHHHHhCCCCEEE
Confidence 3 33332 344444443
No 381
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.97 E-value=0.0027 Score=60.49 Aligned_cols=69 Identities=23% Similarity=0.229 Sum_probs=48.8
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhH-----HHHHhCCCccc--CHHHHHHhCCeeeeccCc
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA-----LQACMDGFSVV--KLNEVIRTVDIVVTATGN 174 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~-----~~a~~~g~~~~--~l~e~~~~aDvvi~~~~~ 174 (258)
.+.+++|+|+|.|.+|+.+|+.|+..|.+|+++|.++... ....+.|++.. ...+....+|+|+.++|.
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi 88 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGW 88 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCc
Confidence 4578999999999999999999999999999999664311 12233465432 111133468999998643
No 382
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.96 E-value=0.0061 Score=54.36 Aligned_cols=110 Identities=17% Similarity=0.199 Sum_probs=72.1
Q ss_pred cccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHh-CC---C--cccCHHHH--HHhCCeeeeccC--
Q psy16115 105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-DG---F--SVVKLNEV--IRTVDIVVTATG-- 173 (258)
Q Consensus 105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~-~g---~--~~~~l~e~--~~~aDvvi~~~~-- 173 (258)
.+.+|++++|+|+|-.+++++..|+..|+ +|++++|+.++.++..+ .+ . ......+. ..++|++|.||.
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 45579999999999999999999999996 69999999988654332 11 1 11222221 116899999862
Q ss_pred ccc-----cccHHHHhcCCCCcEEEecCCC-Chhhchh-hhcCCCceeeee
Q psy16115 174 NKN-----VVTREHMDKMKNGCVVCNMGHS-NTEIDVN-SLRTPDLTWEKV 217 (258)
Q Consensus 174 ~~~-----~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~-~l~~~~i~~~~~ 217 (258)
... .++ .+.++++.++.|+=-. .+..+++ +=+.|...+.|.
T Consensus 202 m~~~~~~~~~~---~~~l~~~~~v~D~vY~P~~TplL~~A~~~G~~~idGl 249 (283)
T COG0169 202 MAGPEGDSPVP---AELLPKGAIVYDVVYNPLETPLLREARAQGAKTIDGL 249 (283)
T ss_pred CCCCCCCCCCc---HHhcCcCCEEEEeccCCCCCHHHHHHHHcCCeEECcH
Confidence 111 232 4568899999998655 2334444 334454455553
No 383
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=96.95 E-value=0.0025 Score=56.90 Aligned_cols=88 Identities=19% Similarity=0.234 Sum_probs=66.2
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-----CHHH--HH-HhCCeeeeccCccccc
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----KLNE--VI-RTVDIVVTATGNKNVV 178 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-----~l~e--~~-~~aDvvi~~~~~~~~i 178 (258)
+|++|+|.|. |.+|+.+++.++..|++|++... +.+...+.+.|.... +..+ .. ...|+++.+.+... +
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~~~-~ 216 (331)
T cd08273 139 TGQRVLIHGASGGVGQALLELALLAGAEVYGTAS-ERNHAALRELGATPIDYRTKDWLPAMLTPGGVDVVFDGVGGES-Y 216 (331)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC-HHHHHHHHHcCCeEEcCCCcchhhhhccCCCceEEEECCchHH-H
Confidence 7899999997 99999999999999999888876 666555556664211 1111 11 24799999887665 4
Q ss_pred cHHHHhcCCCCcEEEecCCC
Q psy16115 179 TREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 179 ~~~~l~~~k~g~~ivnvg~~ 198 (258)
. ..++.+++++.++.+|..
T Consensus 217 ~-~~~~~l~~~g~~v~~g~~ 235 (331)
T cd08273 217 E-ESYAALAPGGTLVCYGGN 235 (331)
T ss_pred H-HHHHHhcCCCEEEEEccC
Confidence 3 778889999999999876
No 384
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=96.94 E-value=0.0037 Score=54.06 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=64.3
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHH----hCCCc----ccCHHHHHH---hCCeeeec----
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC----MDGFS----VVKLNEVIR---TVDIVVTA---- 171 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~----~~g~~----~~~l~e~~~---~aDvvi~~---- 171 (258)
+.|++|+=||+| |..++..+...|++|++.|.++...+.|+ +.|.. ..+.+++.. ..|+|++.
T Consensus 58 l~g~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 58 LPGLRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCCeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 799999999999 55777888889999999999988766554 33433 345667665 57999884
Q ss_pred -cCccccccHHHHhcCCCCcEEEec
Q psy16115 172 -TGNKNVVTREHMDKMKNGCVVCNM 195 (258)
Q Consensus 172 -~~~~~~i~~~~l~~~k~g~~ivnv 195 (258)
...+..+-....+++|||++++.-
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEe
Confidence 444544444677888999988653
No 385
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.92 E-value=0.0027 Score=57.16 Aligned_cols=99 Identities=10% Similarity=0.101 Sum_probs=63.1
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-CCccc------------CHHHHHHhCCeeeeccCccc
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-GFSVV------------KLNEVIRTVDIVVTATGNKN 176 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-g~~~~------------~l~e~~~~aDvvi~~~~~~~ 176 (258)
.+|+|+|+|.||..++-.|...|.+|+++++..++.+...+. |.... ...+.....|+|++|+.+.+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~~ 82 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAYD 82 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHHh
Confidence 479999999999999999999999999999976555433322 32210 01112345799999975443
Q ss_pred ccc--HHHHhcCCCCcEEEecCCC--Chhhchhhhc
Q psy16115 177 VVT--REHMDKMKNGCVVCNMGHS--NTEIDVNSLR 208 (258)
Q Consensus 177 ~i~--~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~ 208 (258)
.-. ++....+.++..++-.-.| ..+.+.+.+.
T Consensus 83 ~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~ 118 (305)
T PRK05708 83 AEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVP 118 (305)
T ss_pred HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCC
Confidence 221 1334456777777766555 4444444443
No 386
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.91 E-value=0.0033 Score=61.85 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=63.7
Q ss_pred CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc----CHHHHH-----HhCCeeeeccCccccc-
Q psy16115 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV----KLNEVI-----RTVDIVVTATGNKNVV- 178 (258)
Q Consensus 109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~----~l~e~~-----~~aDvvi~~~~~~~~i- 178 (258)
..+|.|+|+|++|+.+++.|+..|.+++++|.|+++.+.+++.|.... +-.+.+ +++|.++.++++...-
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 468999999999999999999999999999999999888877776431 223333 4689998886554211
Q ss_pred -cHHHHhcCCCCcEEEecCCC
Q psy16115 179 -TREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 179 -~~~~l~~~k~g~~ivnvg~~ 198 (258)
-....+.+.|...++--.+.
T Consensus 480 ~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 480 KIVELCQQHFPHLHILARARG 500 (601)
T ss_pred HHHHHHHHHCCCCeEEEEeCC
Confidence 11334455566566544443
No 387
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=96.91 E-value=0.0063 Score=53.41 Aligned_cols=89 Identities=25% Similarity=0.308 Sum_probs=67.3
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHH------HhCCeeeeccCc
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVI------RTVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~------~~aDvvi~~~~~ 174 (258)
.|++++|.|. |.+|+.+++.++..|++|++.+.++.+...+.+.|... .+..+.+ ...|+++.+.+.
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~g~ 218 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDPVGG 218 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEECccH
Confidence 6899999998 99999999999999999999988887766665555421 1122221 137999988765
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
..++ ..++.+++++.++++|..
T Consensus 219 -~~~~-~~~~~~~~~g~~v~~~~~ 240 (323)
T cd08241 219 -DVFE-ASLRSLAWGGRLLVIGFA 240 (323)
T ss_pred -HHHH-HHHHhhccCCEEEEEccC
Confidence 3443 678889999999998864
No 388
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=96.91 E-value=0.0035 Score=55.75 Aligned_cols=89 Identities=25% Similarity=0.309 Sum_probs=65.7
Q ss_pred CCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-c-----CH-HHH---H--HhCCeeeeccCc
Q psy16115 108 GGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-V-----KL-NEV---I--RTVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~-----~l-~e~---~--~~aDvvi~~~~~ 174 (258)
.|++++|.|.+ .+|+.+++.++..|++|+++++++.+...+...+... . +. +.+ . ...|+++.+.+.
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~g~ 245 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVVEHVGA 245 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEECCcH
Confidence 78999999997 6999999999999999999988887766555444321 1 11 111 1 146999988765
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
. .++ +.++.+++++.++++|..
T Consensus 246 ~-~~~-~~~~~l~~~G~~v~~~~~ 267 (342)
T cd08266 246 A-TWE-KSLKSLARGGRLVTCGAT 267 (342)
T ss_pred H-HHH-HHHHHhhcCCEEEEEecC
Confidence 3 343 678889999999999865
No 389
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.90 E-value=0.0038 Score=55.73 Aligned_cols=100 Identities=21% Similarity=0.154 Sum_probs=66.5
Q ss_pred ccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHh-C----CC---cccC---HHHHHHhCCeeeeccC
Q psy16115 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-D----GF---SVVK---LNEVIRTVDIVVTATG 173 (258)
Q Consensus 106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~-~----g~---~~~~---l~e~~~~aDvvi~~~~ 173 (258)
++.+++++|+|+|-.|++++..|...|+ +++++||++++.+...+ . +. ...+ ..+.+..+|+|+.++.
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence 4678999999999999999999999998 69999999887654321 1 11 1112 2345567999999862
Q ss_pred --ccc----cccHHHHhcCCCCcEEEecCCC-Chhhchhhhc
Q psy16115 174 --NKN----VVTREHMDKMKNGCVVCNMGHS-NTEIDVNSLR 208 (258)
Q Consensus 174 --~~~----~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~ 208 (258)
... .++ ...++++.++.|+--. .+..++.+-+
T Consensus 204 ~Gm~~~~~~~~~---~~~l~~~~~v~D~vY~P~~T~ll~~A~ 242 (283)
T PRK14027 204 MGMPAHPGTAFD---VSCLTKDHWVGDVVYMPIETELLKAAR 242 (283)
T ss_pred CCCCCCCCCCCC---HHHcCCCcEEEEcccCCCCCHHHHHHH
Confidence 111 232 2346778888888655 3334444333
No 390
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.89 E-value=0.015 Score=47.27 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=64.8
Q ss_pred CCCEEEEEcC--chHHHHHHHHHHhCCCEEEEEeCChhh--H-----H----HHHhCCC--c-ccCHHHHHHhCCeeeec
Q psy16115 108 GGKQVVLCGY--GEVGKGCCQSLKGLGCVIYITEIDPIC--A-----L----QACMDGF--S-VVKLNEVIRTVDIVVTA 171 (258)
Q Consensus 108 ~g~~V~IiG~--G~IG~~~a~~l~~~G~~Vi~~d~~~~~--~-----~----~a~~~g~--~-~~~l~e~~~~aDvvi~~ 171 (258)
.|++|+++|- +++..+++..+..+|+++.++.+.... . . .+.+.|. . ..++++.++++|+|+.-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 4789999993 789999999999999998888655421 1 0 1122233 2 34799999999999885
Q ss_pred c-C--------------ccccccHHHHhcCCCCcEEEecCC
Q psy16115 172 T-G--------------NKNVVTREHMDKMKNGCVVCNMGH 197 (258)
Q Consensus 172 ~-~--------------~~~~i~~~~l~~~k~g~~ivnvg~ 197 (258)
. . ....++.+.++.++++++|..+..
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP 121 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLP 121 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCC
Confidence 3 1 115678888888999999998876
No 391
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=96.88 E-value=0.0067 Score=54.37 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=65.8
Q ss_pred CCEEEEEcC-chHHHHHHHHHHhC-CCEEEEEeCChhhHHHHHhCCCcc-----cCHHHHHH-----hCCeeeeccCccc
Q psy16115 109 GKQVVLCGY-GEVGKGCCQSLKGL-GCVIYITEIDPICALQACMDGFSV-----VKLNEVIR-----TVDIVVTATGNKN 176 (258)
Q Consensus 109 g~~V~IiG~-G~IG~~~a~~l~~~-G~~Vi~~d~~~~~~~~a~~~g~~~-----~~l~e~~~-----~aDvvi~~~~~~~ 176 (258)
|.+|+|.|. |.+|+.+++.++.+ |++|++...++++...+.+.|++. .++.+.+. ..|+++.+.+...
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~vd~vl~~~~~~~ 228 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSLTHTDQ 228 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHcCCCEEEECCCCHHHHHHHhcCCCCCEEEEcCCcHH
Confidence 899999995 89999999999998 999999887777766666667532 12222222 4799998765555
Q ss_pred cccHHHHhcCCCCcEEEecC
Q psy16115 177 VVTREHMDKMKNGCVVCNMG 196 (258)
Q Consensus 177 ~i~~~~l~~~k~g~~ivnvg 196 (258)
.+. +.++.+++++++++++
T Consensus 229 ~~~-~~~~~l~~~G~~v~~~ 247 (336)
T TIGR02817 229 HFK-EIVELLAPQGRFALID 247 (336)
T ss_pred HHH-HHHHHhccCCEEEEEc
Confidence 554 7888999999999875
No 392
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=96.87 E-value=0.0043 Score=54.55 Aligned_cols=89 Identities=21% Similarity=0.299 Sum_probs=66.5
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc----c--CHH----HHH--HhCCeeeeccCc
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV----V--KLN----EVI--RTVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~----~--~l~----e~~--~~aDvvi~~~~~ 174 (258)
.|++++|.|. |.+|+.+++.++..|.+|++.++++.+...+.+.|.+. . +.. +.. +..|+++.+.+.
T Consensus 144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~ 223 (325)
T cd08253 144 AGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQAGADAVFNYRAEDLADRILAATAGQGVDVIIEVLAN 223 (325)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHHcCCCceEEEEECCch
Confidence 7899999995 88999999999999999999998887766666666431 1 111 111 147899988765
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.. + ...++.+++++.++++|..
T Consensus 224 ~~-~-~~~~~~l~~~g~~v~~~~~ 245 (325)
T cd08253 224 VN-L-AKDLDVLAPGGRIVVYGSG 245 (325)
T ss_pred HH-H-HHHHHhhCCCCEEEEEeec
Confidence 43 3 3567788899999999874
No 393
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.85 E-value=0.004 Score=58.66 Aligned_cols=66 Identities=20% Similarity=0.405 Sum_probs=47.5
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhH----HHHHhCCCccc---CHHHHHHh-CCeeeecc
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA----LQACMDGFSVV---KLNEVIRT-VDIVVTAT 172 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~----~~a~~~g~~~~---~l~e~~~~-aDvvi~~~ 172 (258)
+.|+++.|+|.|.+|+++|+.|...|++|+++|.+.... ......|.... ...+.+.. .|+|+..+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 578999999999999999999999999999999765321 11223454432 23344444 89988865
No 394
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=96.85 E-value=0.0052 Score=54.85 Aligned_cols=85 Identities=21% Similarity=0.246 Sum_probs=57.2
Q ss_pred EEEEEcCchHHHHHHHHHHh-CCCE-EEEEeCChhh--HHHHHhCCCc--ccCHHHHHH--hCCeeeeccCccccccHHH
Q psy16115 111 QVVLCGYGEVGKGCCQSLKG-LGCV-IYITEIDPIC--ALQACMDGFS--VVKLNEVIR--TVDIVVTATGNKNVVTREH 182 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~-~G~~-Vi~~d~~~~~--~~~a~~~g~~--~~~l~e~~~--~aDvvi~~~~~~~~i~~~~ 182 (258)
+|+|||+|.||...+..+.. -+.+ +-++|+++++ +..+.+.|.. +.+.++++. +.|+|+.++++..-.. ..
T Consensus 3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e-~a 81 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHAR-HA 81 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHH-HH
Confidence 79999999999987666554 4567 4457888865 3456667764 346788876 4788999976553332 34
Q ss_pred HhcCCCCcEEEecC
Q psy16115 183 MDKMKNGCVVCNMG 196 (258)
Q Consensus 183 l~~~k~g~~ivnvg 196 (258)
.+.++.|..+++-.
T Consensus 82 ~~al~aGk~VIdek 95 (285)
T TIGR03215 82 RLLAELGKIVIDLT 95 (285)
T ss_pred HHHHHcCCEEEECC
Confidence 44556676765544
No 395
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.85 E-value=0.0029 Score=57.06 Aligned_cols=88 Identities=18% Similarity=0.174 Sum_probs=57.9
Q ss_pred EEEEEcCchHHHHHHHHHHhCC--CEEEEEeCChhhHH-HHHhCC-Cc--------ccCHHHHHHhCCeeeeccCccc--
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDPICAL-QACMDG-FS--------VVKLNEVIRTVDIVVTATGNKN-- 176 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G--~~Vi~~d~~~~~~~-~a~~~g-~~--------~~~l~e~~~~aDvvi~~~~~~~-- 176 (258)
+|+|||+|.+|..+|..+...| .+|.++|+++.+.. .+.... .. .....+.+++||+++++.+.+.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~~~~ 81 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGANQKP 81 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCCCCC
Confidence 6999999999999999999989 47999999886543 222211 10 0122355889999999864321
Q ss_pred -------------ccc--HHHHhcCCCCcEEEecCCC
Q psy16115 177 -------------VVT--REHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 177 -------------~i~--~~~l~~~k~g~~ivnvg~~ 198 (258)
++. .+.+....+.+++++++.+
T Consensus 82 ~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP 118 (308)
T cd05292 82 GETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNP 118 (308)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 111 0123334577888888644
No 396
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.84 E-value=0.0026 Score=59.97 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=49.1
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CCCcc-----c---CHHHH-HHhCCeeeeccCc
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSV-----V---KLNEV-IRTVDIVVTATGN 174 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~~-----~---~l~e~-~~~aDvvi~~~~~ 174 (258)
++.|+|+|.+|+.+++.|...|.+|+++|+++.+...+.+ .+... . .++++ +.++|.++.++..
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 6899999999999999999999999999999988765544 44322 1 23333 5578999888644
No 397
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.84 E-value=0.0031 Score=59.61 Aligned_cols=67 Identities=27% Similarity=0.451 Sum_probs=49.7
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhH----HHHHhCCCcccC---HHHHHHhCCeeeeccC
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA----LQACMDGFSVVK---LNEVIRTVDIVVTATG 173 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~----~~a~~~g~~~~~---l~e~~~~aDvvi~~~~ 173 (258)
+.+++|+|+|+|.-|+++++.|+..|++|+++|.++... ......++.+.. ..+....+|+|+..+|
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPG 78 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPG 78 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCC
Confidence 359999999999999999999999999999999776551 111234443321 2255677999999864
No 398
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.84 E-value=0.0048 Score=56.99 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=63.6
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-------C-------------Cc-ccCHHHHHHhCCeee
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-------G-------------FS-VVKLNEVIRTVDIVV 169 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-------g-------------~~-~~~l~e~~~~aDvvi 169 (258)
++.|+|.|-+|...+..+...|.+|+.+|+++.+....... | .. ..+.++.++.+|++|
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~f 81 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVVF 81 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEEE
Confidence 68999999999999999999999999999998875432211 1 11 235667778899999
Q ss_pred eccCcccc----cc--------HHHHhcCCCCcEEEecCCC
Q psy16115 170 TATGNKNV----VT--------REHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 170 ~~~~~~~~----i~--------~~~l~~~k~g~~ivnvg~~ 198 (258)
+|++|+.- +| ++..+.++..+++|+=|.-
T Consensus 82 IavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTV 122 (414)
T COG1004 82 IAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTV 122 (414)
T ss_pred EEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCC
Confidence 99776632 22 1234556666888876654
No 399
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.83 E-value=0.003 Score=62.37 Aligned_cols=86 Identities=14% Similarity=0.210 Sum_probs=61.3
Q ss_pred CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc----CHHHHH-----HhCCeeeeccCcccc--
Q psy16115 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV----KLNEVI-----RTVDIVVTATGNKNV-- 177 (258)
Q Consensus 109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~----~l~e~~-----~~aDvvi~~~~~~~~-- 177 (258)
.++|.|+|+|++|+.+++.|++.|.+++++|.|+++.+.+++.|.... +-.+.+ +++|.++.++.....
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 478999999999999999999999999999999999888877776532 223333 368999988654321
Q ss_pred ccHHHHhcCCCCcEEEe
Q psy16115 178 VTREHMDKMKNGCVVCN 194 (258)
Q Consensus 178 i~~~~l~~~k~g~~ivn 194 (258)
.-....+.+.|+..++-
T Consensus 480 ~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 480 QLVELVKEHFPHLQIIA 496 (621)
T ss_pred HHHHHHHHhCCCCeEEE
Confidence 11133444555555543
No 400
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=96.83 E-value=0.0068 Score=53.96 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=66.7
Q ss_pred CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-c-----C-HHHHH------HhCCeeeeccC
Q psy16115 108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-V-----K-LNEVI------RTVDIVVTATG 173 (258)
Q Consensus 108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~-----~-l~e~~------~~aDvvi~~~~ 173 (258)
.|.+|+|.| .|.+|+.+++.++..|++++++..++++...+.+.|.+. . + +.+.+ +..|+++.+.+
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 219 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVG 219 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCCceEEEECCc
Confidence 689999999 589999999999999999877888888777666666531 1 1 22211 13689998876
Q ss_pred ccccccHHHHhcCCCCcEEEecCCC
Q psy16115 174 NKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 174 ~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
. ..+. ..++.+++++.++++|..
T Consensus 220 ~-~~~~-~~~~~l~~~g~~i~~~~~ 242 (334)
T PTZ00354 220 G-SYLS-ETAEVLAVDGKWIVYGFM 242 (334)
T ss_pred h-HHHH-HHHHHhccCCeEEEEecC
Confidence 4 3443 678889999999998753
No 401
>PRK08324 short chain dehydrogenase; Validated
Probab=96.83 E-value=0.0041 Score=62.02 Aligned_cols=42 Identities=24% Similarity=0.455 Sum_probs=37.1
Q ss_pred ccCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115 106 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQ 147 (258)
Q Consensus 106 ~l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~ 147 (258)
.+.|++++|.|. |.||+.+++.+...|++|+++++++.+...
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~ 461 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEA 461 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHH
Confidence 468999999994 889999999999999999999999876544
No 402
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.82 E-value=0.004 Score=55.89 Aligned_cols=86 Identities=22% Similarity=0.221 Sum_probs=55.2
Q ss_pred EEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHH-HH---hC----CC----cc-cCHHHHHHhCCeeeeccCccc-
Q psy16115 112 VVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-AC---MD----GF----SV-VKLNEVIRTVDIVVTATGNKN- 176 (258)
Q Consensus 112 V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~-a~---~~----g~----~~-~~l~e~~~~aDvvi~~~~~~~- 176 (258)
|+|||+|.||..+|..+...|. +|+++|+++.++.. +. +. +. .. .+. +.+++||+|+++.+++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~p~~ 79 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGIPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCCCCC
Confidence 5899999999999999987765 99999998765321 11 10 11 11 233 45889999999754321
Q ss_pred --------------ccc--HHHHhcCCCCcEEEecCCC
Q psy16115 177 --------------VVT--REHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 177 --------------~i~--~~~l~~~k~g~~ivnvg~~ 198 (258)
++. .+.++...+.+++++++.+
T Consensus 80 ~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP 117 (300)
T cd01339 80 PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNP 117 (300)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 111 0123334577888888755
No 403
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=96.82 E-value=0.015 Score=51.74 Aligned_cols=89 Identities=22% Similarity=0.204 Sum_probs=67.7
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-------cCHHHHHH------hCCeeeeccCc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-------VKLNEVIR------TVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-------~~l~e~~~------~aDvvi~~~~~ 174 (258)
.|.+|.|.|.|.+|+.+++.++..|++|++.+.++.+...+.+.|.+. .+..+.+. ..|+++.+.+.
T Consensus 160 ~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 239 (336)
T cd08276 160 PGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLERAKALGADHVINYRTTPDWGEEVLKLTGGRGVDHVVEVGGP 239 (336)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEcCCcccCHHHHHHHHcCCCCCcEEEECCCh
Confidence 789999999999999999999999999999988877766655555431 12222221 47999998753
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
..+. ..++.+++++.++++|..
T Consensus 240 -~~~~-~~~~~l~~~G~~v~~g~~ 261 (336)
T cd08276 240 -GTLA-QSIKAVAPGGVISLIGFL 261 (336)
T ss_pred -HHHH-HHHHhhcCCCEEEEEccC
Confidence 3443 678889999999999865
No 404
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.81 E-value=0.0033 Score=55.55 Aligned_cols=83 Identities=16% Similarity=0.266 Sum_probs=48.5
Q ss_pred CEEEEEcCchHHHHHHHHHHhC-CCEE-EEEeCChhh--HHHHHhCCCc-ccCHHHHHHhCCeeeeccCccccccHHHHh
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGL-GCVI-YITEIDPIC--ALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMD 184 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~-G~~V-i~~d~~~~~--~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~ 184 (258)
.+|+|+|+|.||+.+++.+... +.++ .++++.... .......+.. +.+++++-.+.|+|++|+++.... ....+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~-e~~~~ 80 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALK-EHVVP 80 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHH-HHHHH
Confidence 3799999999999999999876 4553 334443221 1111112333 346777634589999997654332 23334
Q ss_pred cCCCCcEEE
Q psy16115 185 KMKNGCVVC 193 (258)
Q Consensus 185 ~~k~g~~iv 193 (258)
.++.|.-++
T Consensus 81 aL~aGk~Vv 89 (265)
T PRK13303 81 ILKAGIDCA 89 (265)
T ss_pred HHHcCCCEE
Confidence 444444443
No 405
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=96.80 E-value=0.011 Score=51.69 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=66.3
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHH----HH--HhCCeeeeccCc
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNE----VI--RTVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e----~~--~~aDvvi~~~~~ 174 (258)
.|++++|.|. |.+|+.+++.++..|++|++.++++.+...+.+.|.+.. +..+ .. ...|+++.+.+.
T Consensus 139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~ 218 (323)
T cd05276 139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEACRALGADVAINYRTEDFAEEVKEATGGRGVDVILDMVGG 218 (323)
T ss_pred CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEeCCchhHHHHHHHHhCCCCeEEEEECCch
Confidence 7899999996 789999999999999999999888777666655554211 1111 11 147999998775
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.. +. ..++.+++++.++++|..
T Consensus 219 ~~-~~-~~~~~~~~~g~~i~~~~~ 240 (323)
T cd05276 219 DY-LA-RNLRALAPDGRLVLIGLL 240 (323)
T ss_pred HH-HH-HHHHhhccCCEEEEEecC
Confidence 44 33 677888999999998764
No 406
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=96.79 E-value=0.0085 Score=53.99 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=64.4
Q ss_pred CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-c-----CHHHHH---HhCCeeeeccCcccc
Q psy16115 108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-V-----KLNEVI---RTVDIVVTATGNKNV 177 (258)
Q Consensus 108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~-----~l~e~~---~~aDvvi~~~~~~~~ 177 (258)
+|++|+|.| .|.+|+.+++.++..|++|++...+ .+...+.+.|.+. . +..+.+ ...|+++.+.+.. .
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~vd~vi~~~g~~-~ 239 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DAIPLVKSLGADDVIDYNNEDFEEELTERGKFDVILDTVGGD-T 239 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-chHHHHHHhCCceEEECCChhHHHHHHhcCCCCEEEECCChH-H
Confidence 499999999 5999999999999999998877654 4444455555421 1 111211 2479999998765 4
Q ss_pred ccHHHHhcCCCCcEEEecCCC
Q psy16115 178 VTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 178 i~~~~l~~~k~g~~ivnvg~~ 198 (258)
+ ...++.+++++.++++|..
T Consensus 240 ~-~~~~~~l~~~G~~v~~g~~ 259 (350)
T cd08248 240 E-KWALKLLKKGGTYVTLVSP 259 (350)
T ss_pred H-HHHHHHhccCCEEEEecCC
Confidence 4 3788999999999999854
No 407
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.78 E-value=0.0039 Score=60.73 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=51.7
Q ss_pred CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc----CHHHH-----HHhCCeeeeccCc
Q psy16115 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV----KLNEV-----IRTVDIVVTATGN 174 (258)
Q Consensus 109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~----~l~e~-----~~~aDvvi~~~~~ 174 (258)
...+.|+|+|++|+.+++.|+..|.+++++|.|+++.+.+++.|+... +-++. ++++|.++.++++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~ 491 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPN 491 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCC
Confidence 368999999999999999999999999999999998887777776432 12233 3468888777543
No 408
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.77 E-value=0.0038 Score=48.18 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=53.4
Q ss_pred EEEEEcC-chHHHHHHHHHHhC-CCEEEEE-eCChhhHHHHHh-CC-Cc-----ccCHHHH-HHhCCeeeeccCcccccc
Q psy16115 111 QVVLCGY-GEVGKGCCQSLKGL-GCVIYIT-EIDPICALQACM-DG-FS-----VVKLNEV-IRTVDIVVTATGNKNVVT 179 (258)
Q Consensus 111 ~V~IiG~-G~IG~~~a~~l~~~-G~~Vi~~-d~~~~~~~~a~~-~g-~~-----~~~l~e~-~~~aDvvi~~~~~~~~i~ 179 (258)
+++|+|+ |.+|..++..+... +.++..+ +++..+...+.. .+ .. ..+.++. ..++|+|+.|+.......
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 5899994 88999999999885 7776554 544322211111 11 11 1111111 247999999975553332
Q ss_pred H--HHHhcCCCCcEEEecCCC
Q psy16115 180 R--EHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 180 ~--~~l~~~k~g~~ivnvg~~ 198 (258)
. .....+++|.++|++|..
T Consensus 81 ~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 81 IAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred HHHHHHhhhcCCCEEEECCcc
Confidence 1 234457899999999865
No 409
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=96.77 E-value=0.0034 Score=55.42 Aligned_cols=89 Identities=21% Similarity=0.200 Sum_probs=61.2
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-c-----CHH-HHH--HhCCeeeeccCccc-
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-V-----KLN-EVI--RTVDIVVTATGNKN- 176 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~-----~l~-e~~--~~aDvvi~~~~~~~- 176 (258)
.|.+|+|.|. |.+|+.+++.++..|++|++++.+ .+...+.+.|... . +.. ... ...|+++.|++...
T Consensus 143 ~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~ 221 (319)
T cd08267 143 PGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDAVGNSPF 221 (319)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHHHcCCCEeecCCCCCcchhccCCCCCcEEEECCCchHH
Confidence 7899999997 999999999999999998888754 4444555556421 1 111 111 23699999876321
Q ss_pred cccHHHHhcCCCCcEEEecCCC
Q psy16115 177 VVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 177 ~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
... .....+++++.++++|..
T Consensus 222 ~~~-~~~~~l~~~g~~i~~g~~ 242 (319)
T cd08267 222 SLY-RASLALKPGGRYVSVGGG 242 (319)
T ss_pred HHH-HhhhccCCCCEEEEeccc
Confidence 111 223348999999999876
No 410
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=96.77 E-value=0.01 Score=51.08 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=66.5
Q ss_pred CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCC--Ccc-c-----CHHHHHH------hCCeeeecc
Q psy16115 108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG--FSV-V-----KLNEVIR------TVDIVVTAT 172 (258)
Q Consensus 108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g--~~~-~-----~l~e~~~------~aDvvi~~~ 172 (258)
+|.+|+|.| .|.+|+.+++.++..|.+|++.+.++.+...+...+ .+. . ++.+.+. ..|+++.+.
T Consensus 108 ~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~ 187 (293)
T cd05195 108 KGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLRELGGPVDHIFSSRDLSFADGILRATGGRGVDVVLNSL 187 (293)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhCCCcceEeecCchhHHHHHHHHhCCCCceEEEeCC
Confidence 789999997 799999999999999999988887776665555544 211 1 1222221 479999998
Q ss_pred CccccccHHHHhcCCCCcEEEecCCC
Q psy16115 173 GNKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 173 ~~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
+.. .++ ..++.+++++.++.+|..
T Consensus 188 ~~~-~~~-~~~~~l~~~g~~v~~g~~ 211 (293)
T cd05195 188 SGE-LLR-ASWRCLAPFGRFVEIGKR 211 (293)
T ss_pred Cch-HHH-HHHHhcccCceEEEeecc
Confidence 766 554 778899999999988865
No 411
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.76 E-value=0.0058 Score=49.96 Aligned_cols=60 Identities=22% Similarity=0.343 Sum_probs=47.9
Q ss_pred EEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-----cc---CHHHHHHhCCeeeeccC
Q psy16115 112 VVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-----VV---KLNEVIRTVDIVVTATG 173 (258)
Q Consensus 112 V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-----~~---~l~e~~~~aDvvi~~~~ 173 (258)
|+|+|+ |.+|+.+++.|...|.+|++.-|++.+... ..+++ .. ++.+.++++|.|+.+.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhh
Confidence 689996 999999999999999999999999987654 33333 12 35666779999999864
No 412
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.73 E-value=0.0035 Score=55.16 Aligned_cols=87 Identities=16% Similarity=0.244 Sum_probs=58.7
Q ss_pred EEEEcC-chHHHHHHHHHHhCC----CEEEEEeCChhhHHHHHh--------C-CCc---ccCHHHHHHhCCeeeeccCc
Q psy16115 112 VVLCGY-GEVGKGCCQSLKGLG----CVIYITEIDPICALQACM--------D-GFS---VVKLNEVIRTVDIVVTATGN 174 (258)
Q Consensus 112 V~IiG~-G~IG~~~a~~l~~~G----~~Vi~~d~~~~~~~~a~~--------~-g~~---~~~l~e~~~~aDvvi~~~~~ 174 (258)
|+|||+ |.+|..++..+...| .++.++|+++.++..... . ... ..++.+.+++||+|+++.+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999998888 579999998866432111 1 111 12457889999999997432
Q ss_pred c---c------------ccc--HHHHhcCCCCcEEEecCCC
Q psy16115 175 K---N------------VVT--REHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~---~------------~i~--~~~l~~~k~g~~ivnvg~~ 198 (258)
. + ++. .+.++...+.+++++++.+
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP 121 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNP 121 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 1 1 111 0123344589999999755
No 413
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.73 E-value=0.0056 Score=55.22 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=58.8
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHH-HHHhC-------C----Ccc-cCHHHHHHhCCeeeeccCcc
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QACMD-------G----FSV-VKLNEVIRTVDIVVTATGNK 175 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~-~a~~~-------g----~~~-~~l~e~~~~aDvvi~~~~~~ 175 (258)
.+|+|||.|.+|..+|..+...|. +|+++|+++.... .+... . ... .+.++ +++||+||++.+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 479999999999999999988775 8999999765432 11110 1 111 34555 78999999997643
Q ss_pred cc----------ccH----H---HHhcCCCCcEEEecCCC
Q psy16115 176 NV----------VTR----E---HMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 176 ~~----------i~~----~---~l~~~k~g~~ivnvg~~ 198 (258)
.- .|. + .+....+++++++++.+
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP 120 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNP 120 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 21 111 1 12333578899999876
No 414
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.70 E-value=0.0055 Score=52.36 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=32.6
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID 141 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~ 141 (258)
+...+|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 688999999999999999999999998 59999887
No 415
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.69 E-value=0.0032 Score=48.24 Aligned_cols=82 Identities=23% Similarity=0.319 Sum_probs=50.7
Q ss_pred cCchHHHHHHHHHHhC----CCE-EEEEeCC--hhhHHHHH-hCCCcccCHHHHHH--hCCeeeeccCccccccHHHHhc
Q psy16115 116 GYGEVGKGCCQSLKGL----GCV-IYITEID--PICALQAC-MDGFSVVKLNEVIR--TVDIVVTATGNKNVVTREHMDK 185 (258)
Q Consensus 116 G~G~IG~~~a~~l~~~----G~~-Vi~~d~~--~~~~~~a~-~~g~~~~~l~e~~~--~aDvvi~~~~~~~~i~~~~l~~ 185 (258)
|+|.||+.+++.++.. +.+ +.+++++ ........ .......++++++. ..|+|++|++...+. .-..+.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~-~~~~~~ 79 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVA-EYYEKA 79 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHH-HHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHH-HHHHHH
Confidence 8999999999999876 566 4457777 11111111 12234567888888 899999996554433 345667
Q ss_pred CCCCcEEEecCCC
Q psy16115 186 MKNGCVVCNMGHS 198 (258)
Q Consensus 186 ~k~g~~ivnvg~~ 198 (258)
++.|.-+|-...+
T Consensus 80 L~~G~~VVt~nk~ 92 (117)
T PF03447_consen 80 LERGKHVVTANKG 92 (117)
T ss_dssp HHTTCEEEES-HH
T ss_pred HHCCCeEEEECHH
Confidence 7888888766544
No 416
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.68 E-value=0.0053 Score=56.19 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=32.9
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID 141 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~ 141 (258)
|..++|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 688999999999999999999999998 79999986
No 417
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=96.66 E-value=0.024 Score=51.05 Aligned_cols=92 Identities=17% Similarity=0.265 Sum_probs=65.3
Q ss_pred ccCCCEEEEEcCc---hHHHHHHHHHHhCCCEEEEEeCChhh-----HHHHHhCCCc---ccCHHHHHHhCCeeeeccC-
Q psy16115 106 MFGGKQVVLCGYG---EVGKGCCQSLKGLGCVIYITEIDPIC-----ALQACMDGFS---VVKLNEVIRTVDIVVTATG- 173 (258)
Q Consensus 106 ~l~g~~V~IiG~G---~IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~~a~~~g~~---~~~l~e~~~~aDvvi~~~~- 173 (258)
.+.|.+|+++|-| ++.++.+..+..+|++|.++.+.... ...+.+.|.. ..++++.++++|+|+.-.-
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~ 226 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQ 226 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCcc
Confidence 4789999999985 89999999999999998887554321 1233344554 3578999999999988421
Q ss_pred --------------ccccccHHHHhcCCCCcEEEecCC
Q psy16115 174 --------------NKNVVTREHMDKMKNGCVVCNMGH 197 (258)
Q Consensus 174 --------------~~~~i~~~~l~~~k~g~~ivnvg~ 197 (258)
.+..++.+.++.+++++++..+..
T Consensus 227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclP 264 (301)
T TIGR00670 227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLP 264 (301)
T ss_pred ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCC
Confidence 123455566667777777766553
No 418
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=96.65 E-value=0.0096 Score=53.50 Aligned_cols=87 Identities=16% Similarity=0.199 Sum_probs=57.6
Q ss_pred EEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHhC-------C-Ccc--cCHHHHHHhCCeeeeccCccc--
Q psy16115 112 VVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACMD-------G-FSV--VKLNEVIRTVDIVVTATGNKN-- 176 (258)
Q Consensus 112 V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~~-------g-~~~--~~l~e~~~~aDvvi~~~~~~~-- 176 (258)
|+|||+|.+|..+|..+...|. +++++|+++.+... +.+. . ... .+-.+.+++||+|+.+.+++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~~~ 80 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRKP 80 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCCCC
Confidence 5799999999999999998883 69999998775432 1111 0 011 111467889999999865432
Q ss_pred -------------ccc--HHHHhcCCCCcEEEecCCC
Q psy16115 177 -------------VVT--REHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 177 -------------~i~--~~~l~~~k~g~~ivnvg~~ 198 (258)
++. .+.++...|.+++++++-+
T Consensus 81 ~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP 117 (300)
T cd00300 81 GETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNP 117 (300)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCh
Confidence 111 0123344588999999865
No 419
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=96.65 E-value=0.0059 Score=53.66 Aligned_cols=96 Identities=15% Similarity=0.147 Sum_probs=64.4
Q ss_pred cCcccCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHH-HH-----hCCCcc-cCHHHH-HHhCCeeeeccC
Q psy16115 103 TDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQ-AC-----MDGFSV-VKLNEV-IRTVDIVVTATG 173 (258)
Q Consensus 103 ~~~~l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~-a~-----~~g~~~-~~l~e~-~~~aDvvi~~~~ 173 (258)
.|.+++..+|+|+|+ |.||..+++.+...+.+....-|+.++... +. +.+... .+++.. ....+++..++.
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~ 240 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASM 240 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeec
Confidence 477899999999995 789999999999999887777665544321 11 122222 233333 344556666653
Q ss_pred -ccccccHHHHhcCCCCcEEEecCCC-Chh
Q psy16115 174 -NKNVVTREHMDKMKNGCVVCNMGHS-NTE 201 (258)
Q Consensus 174 -~~~~i~~~~l~~~k~g~~ivnvg~~-~~~ 201 (258)
+...|+.+ .+|||+.++|-|++ |.+
T Consensus 241 ~~g~~I~pq---~lkpg~~ivD~g~P~dvd 267 (351)
T COG5322 241 PKGVEIFPQ---HLKPGCLIVDGGYPKDVD 267 (351)
T ss_pred CCCceechh---hccCCeEEEcCCcCcccc
Confidence 33456655 47999999999998 443
No 420
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.64 E-value=0.01 Score=53.78 Aligned_cols=88 Identities=16% Similarity=0.220 Sum_probs=66.1
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC--------CCc-------ccCHHHHHHhCCeeeeccCc
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD--------GFS-------VVKLNEVIRTVDIVVTATGN 174 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~--------g~~-------~~~l~e~~~~aDvvi~~~~~ 174 (258)
.+|.|+|.|.-|.++|+.|...|..|..|.++++...+.... +.. ..++.++++++|+|+.+..+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 589999999999999999999999999999987765432221 111 23688999999999998644
Q ss_pred cc---cccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KN---VVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~---~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.. ++. +.-..++++..++.++-|
T Consensus 82 ~~~r~v~~-~l~~~l~~~~~iv~~sKG 107 (329)
T COG0240 82 QALREVLR-QLKPLLLKDAIIVSATKG 107 (329)
T ss_pred HHHHHHHH-HHhhhccCCCeEEEEecc
Confidence 43 222 222346799999999988
No 421
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.63 E-value=0.015 Score=52.47 Aligned_cols=98 Identities=13% Similarity=0.186 Sum_probs=63.4
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-------------CHHHHHHhCCeeeeccC---c
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-------------KLNEVIRTVDIVVTATG---N 174 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-------------~l~e~~~~aDvvi~~~~---~ 174 (258)
++.|+|+|.||...+.+|...|..|++..|++. .+..++.|.... ...+....+|+|++++. +
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q~ 80 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQL 80 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccccH
Confidence 799999999999999999999977888877665 444445454321 12233446899999863 3
Q ss_pred cccccHHHHhcCCCCcEEEec--CCCChhhchhhhcCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNM--GHSNTEIDVNSLRTPD 211 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnv--g~~~~~~~~~~l~~~~ 211 (258)
...+. .....+++.+.++-. |.+..+ .+...-..+
T Consensus 81 ~~al~-~l~~~~~~~t~vl~lqNG~g~~e-~l~~~~~~~ 117 (307)
T COG1893 81 EEALP-SLAPLLGPNTVVLFLQNGLGHEE-ELRKILPKE 117 (307)
T ss_pred HHHHH-HhhhcCCCCcEEEEEeCCCcHHH-HHHHhCCcc
Confidence 34443 455566777666643 444555 444443333
No 422
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=96.62 E-value=0.011 Score=54.09 Aligned_cols=88 Identities=14% Similarity=0.151 Sum_probs=60.7
Q ss_pred EEEEEcCchHHHHHHHHHHhCC--------CEEEEEeCCh-----hhHHHHHh--C------CCc-------ccCHHHHH
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLG--------CVIYITEIDP-----ICALQACM--D------GFS-------VVKLNEVI 162 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G--------~~Vi~~d~~~-----~~~~~a~~--~------g~~-------~~~l~e~~ 162 (258)
+|+|||.|..|.++|..+...| .+|..|.+++ .-.+...+ . ++. ..++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999998877 8999998732 21111111 0 221 13678889
Q ss_pred HhCCeeeeccCcccc--ccHHHHhcCCCCcEEEecCCC
Q psy16115 163 RTVDIVVTATGNKNV--VTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 163 ~~aDvvi~~~~~~~~--i~~~~l~~~k~g~~ivnvg~~ 198 (258)
+++|+|+.+..+..+ +-.+.-..++++..+|++.-|
T Consensus 81 ~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKG 118 (342)
T TIGR03376 81 KGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKG 118 (342)
T ss_pred hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCC
Confidence 999999999644432 112333456788899999888
No 423
>PRK06444 prephenate dehydrogenase; Provisional
Probab=96.62 E-value=0.0036 Score=52.95 Aligned_cols=77 Identities=12% Similarity=0.203 Sum_probs=53.4
Q ss_pred EEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHHhcCCCC
Q psy16115 111 QVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNG 189 (258)
Q Consensus 111 ~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~g 189 (258)
+++|||. |.+|+.++..++..|..|. ++++|+|++|+....+. +.++.+.
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~-------------------------~~~~DlVilavPv~~~~--~~i~~~~-- 52 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVY-------------------------IKKADHAFLSVPIDAAL--NYIESYD-- 52 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEE-------------------------ECCCCEEEEeCCHHHHH--HHHHHhC--
Confidence 6899998 9999999999999999875 24789999997443332 3444444
Q ss_pred cEEEecCCCChhhchhhhcCCCceeeeeccCc
Q psy16115 190 CVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQV 221 (258)
Q Consensus 190 ~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~ 221 (258)
.+++|+|.-+.+.. +. .....+.+|..
T Consensus 53 ~~v~Dv~SvK~~i~-~~----~~~~vg~HPMf 79 (197)
T PRK06444 53 NNFVEISSVKWPFK-KY----SGKIVSIHPLF 79 (197)
T ss_pred CeEEeccccCHHHH-Hh----cCCEEecCCCC
Confidence 37899998755421 11 12456666654
No 424
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.61 E-value=0.006 Score=56.55 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=32.9
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID 141 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~ 141 (258)
+.+++|+|+|+|.+|..++..|...|. +++++|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 689999999999999999999999998 69999887
No 425
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=96.61 E-value=0.015 Score=51.27 Aligned_cols=89 Identities=19% Similarity=0.196 Sum_probs=66.6
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CH----HHHHH--hCCeeeeccCc
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KL----NEVIR--TVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l----~e~~~--~aDvvi~~~~~ 174 (258)
++++++|.|. |.+|+.+++.++..|+++++.+.++.+...+.+.|.+.. +. .+... ..|+++.+.+.
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~ 223 (328)
T cd08268 144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLALGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDPVGG 223 (328)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHhCCCCceEEEECCch
Confidence 6899999997 889999999999999999998888776655555554211 12 12222 47999998766
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
. .. .+.++.+++++.++.+|..
T Consensus 224 ~-~~-~~~~~~l~~~g~~v~~g~~ 245 (328)
T cd08268 224 P-QF-AKLADALAPGGTLVVYGAL 245 (328)
T ss_pred H-hH-HHHHHhhccCCEEEEEEeC
Confidence 3 33 3678889999999998865
No 426
>KOG1198|consensus
Probab=96.60 E-value=0.0079 Score=55.24 Aligned_cols=68 Identities=25% Similarity=0.278 Sum_probs=51.1
Q ss_pred CCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHHh-----CCeeeeccCcc
Q psy16115 108 GGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIRT-----VDIVVTATGNK 175 (258)
Q Consensus 108 ~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~~-----aDvvi~~~~~~ 175 (258)
+|+.|+|+|.+ .+|+.+.+.++..|+..++...+.+..+..++.|++. .+..|.++. .|+|+.|.+..
T Consensus 157 ~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~vg~~ 236 (347)
T KOG1198|consen 157 KGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDCVGGS 236 (347)
T ss_pred CCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEECCCCC
Confidence 78999999876 5999999999999965555555667777788888652 234444444 79999998665
No 427
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.57 E-value=0.014 Score=51.72 Aligned_cols=104 Identities=14% Similarity=0.094 Sum_probs=66.9
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHH-hCCCcccCHHHH-HHhCCeeeeccC--ccc------
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQAC-MDGFSVVKLNEV-IRTVDIVVTATG--NKN------ 176 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~-~~g~~~~~l~e~-~~~aDvvi~~~~--~~~------ 176 (258)
.+++++|+|+|-.+++++..|+..|+ +|++++|++++.+... ..+.... ++. ...+|+||.|+. ...
T Consensus 121 ~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~--~~~~~~~~dlvINaTp~Gm~~~~~~~~ 198 (272)
T PRK12550 121 PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR--PDLGGIEADILVNVTPIGMAGGPEADK 198 (272)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch--hhcccccCCEEEECCccccCCCCcccc
Confidence 46799999999999999999999998 5999999998765432 2232221 111 245899999862 211
Q ss_pred -cccHHHHhcCCCCcEEEecCCC-Chhhchhhh-cCCCceeee
Q psy16115 177 -VVTREHMDKMKNGCVVCNMGHS-NTEIDVNSL-RTPDLTWEK 216 (258)
Q Consensus 177 -~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l-~~~~i~~~~ 216 (258)
.++ .+.++++.++.|+--. .+..++..- +.|.-.+.|
T Consensus 199 ~pi~---~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~i~G 238 (272)
T PRK12550 199 LAFP---EAEIDAASVVFDVVALPAETPLIRYARARGKTVITG 238 (272)
T ss_pred CCCC---HHHcCCCCEEEEeecCCccCHHHHHHHHCcCeEeCC
Confidence 233 2347788899998765 333444433 344333333
No 428
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.57 E-value=0.0044 Score=47.97 Aligned_cols=86 Identities=21% Similarity=0.247 Sum_probs=52.3
Q ss_pred EEEEEc-CchHHHHHHHHHHhC-CCE-EEEEeCChhh---HHHHHh--CCCc---ccC-HHHHHHhCCeeeeccCccccc
Q psy16115 111 QVVLCG-YGEVGKGCCQSLKGL-GCV-IYITEIDPIC---ALQACM--DGFS---VVK-LNEVIRTVDIVVTATGNKNVV 178 (258)
Q Consensus 111 ~V~IiG-~G~IG~~~a~~l~~~-G~~-Vi~~d~~~~~---~~~a~~--~g~~---~~~-l~e~~~~aDvvi~~~~~~~~i 178 (258)
+|+|+| .|.+|+.++++|... .++ +.++.++... ...... .+.. ..+ ..+.+.++|+||.|+++...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~- 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS- 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH-
Confidence 689999 999999999999874 345 4556655511 211111 1121 111 23445889999999754422
Q ss_pred cHHHHh-cCCCCcEEEecCCC
Q psy16115 179 TREHMD-KMKNGCVVCNMGHS 198 (258)
Q Consensus 179 ~~~~l~-~~k~g~~ivnvg~~ 198 (258)
++... .+++|..+||.+..
T Consensus 80 -~~~~~~~~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 80 -KELAPKLLKAGIKVIDLSGD 99 (121)
T ss_dssp -HHHHHHHHHTTSEEEESSST
T ss_pred -HHHHHHHhhCCcEEEeCCHH
Confidence 12222 25889999998865
No 429
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.54 E-value=0.011 Score=55.55 Aligned_cols=67 Identities=19% Similarity=0.304 Sum_probs=47.6
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHH-HHHhCCCccc---CHHHHHHhCCeeeeccC
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL-QACMDGFSVV---KLNEVIRTVDIVVTATG 173 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~-~a~~~g~~~~---~l~e~~~~aDvvi~~~~ 173 (258)
+.++++.|+|.|..|++.++.|+..|.+|.++|..+.... ...+.|+... ...+.++..|+++..++
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~spg 74 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVASPG 74 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEECCC
Confidence 4678999999999999999999999999999997654321 1223354331 12244567898888643
No 430
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.53 E-value=0.0077 Score=52.46 Aligned_cols=35 Identities=23% Similarity=0.468 Sum_probs=32.1
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID 141 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~ 141 (258)
+.+.+|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 688999999999999999999999997 68888865
No 431
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=96.53 E-value=0.015 Score=51.74 Aligned_cols=89 Identities=22% Similarity=0.236 Sum_probs=64.6
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc----CHHHHH----H-hCCeeeeccCcccc
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV----KLNEVI----R-TVDIVVTATGNKNV 177 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~----~l~e~~----~-~aDvvi~~~~~~~~ 177 (258)
.|++|+|.|. |.+|+.+++.++.+|++|++++.++++...+.+.|++.. +....+ . +.|.++.+.+.. .
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 224 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTGRPEEADYLRSLGASEIIDRAELSEPGRPLQKERWAGAVDTVGGH-T 224 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCEEEEcchhhHhhhhhccCcccEEEECCcHH-H
Confidence 4689999998 999999999999999999988888887776767776321 111111 1 346777777643 3
Q ss_pred ccHHHHhcCCCCcEEEecCCC
Q psy16115 178 VTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 178 i~~~~l~~~k~g~~ivnvg~~ 198 (258)
+. ..+..++.++.++.+|+.
T Consensus 225 ~~-~~~~~~~~~g~~~~~G~~ 244 (324)
T cd08288 225 LA-NVLAQTRYGGAVAACGLA 244 (324)
T ss_pred HH-HHHHHhcCCCEEEEEEec
Confidence 32 566778888899988874
No 432
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=96.52 E-value=0.008 Score=52.41 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=65.8
Q ss_pred CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHH------HhCCeeeeccCc
Q psy16115 108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVI------RTVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~------~~aDvvi~~~~~ 174 (258)
+|.++.|.| .|.+|+.+++.++..|++|++.+.++.+...+.+.|.+.. +..+.+ ...|+++.+.+.
T Consensus 120 ~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~~~ 199 (303)
T cd08251 120 KGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEYLKQLGVPHVINYVEEDFEEEIMRLTGGRGVDVVINTLSG 199 (303)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHcCCCCceEEEECCcH
Confidence 688999975 6789999999999999999999888777666666665311 222222 147899888743
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
..+. ..++.+++++.++++|..
T Consensus 200 -~~~~-~~~~~l~~~g~~v~~~~~ 221 (303)
T cd08251 200 -EAIQ-KGLNCLAPGGRYVEIAMT 221 (303)
T ss_pred -HHHH-HHHHHhccCcEEEEEecc
Confidence 3443 667889999999998765
No 433
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.52 E-value=0.0091 Score=52.12 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=32.1
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID 141 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~ 141 (258)
|.+++|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 689999999999999999999999997 68888765
No 434
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.52 E-value=0.0074 Score=52.00 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=31.9
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID 141 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~ 141 (258)
+.+++|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 688999999999999999999999998 68888754
No 435
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=96.51 E-value=0.025 Score=49.68 Aligned_cols=89 Identities=17% Similarity=0.315 Sum_probs=66.5
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHH------HhCCeeeeccCc
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVI------RTVDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~------~~aDvvi~~~~~ 174 (258)
+|+++.|.|. |.+|+.+++.++..|++|++..+++.+...+.+.|.... +..+.+ +..|+++.+.+.
T Consensus 139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 218 (325)
T TIGR02824 139 AGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAACEALGADIAINYREEDFVEVVKAETGGKGVDVILDIVGG 218 (325)
T ss_pred CCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCchhHHHHHHHHcCCCCeEEEEECCch
Confidence 7899999996 889999999999999999998888877665655554211 121211 137999988765
Q ss_pred cccccHHHHhcCCCCcEEEecCCC
Q psy16115 175 KNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
. .+. ..++.+++++.++.+|..
T Consensus 219 ~-~~~-~~~~~l~~~g~~v~~g~~ 240 (325)
T TIGR02824 219 S-YLN-RNIKALALDGRIVQIGFQ 240 (325)
T ss_pred H-HHH-HHHHhhccCcEEEEEecC
Confidence 3 343 677889999999998864
No 436
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=96.50 E-value=0.0093 Score=52.09 Aligned_cols=88 Identities=22% Similarity=0.271 Sum_probs=64.8
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-cc-----CHHHHH--HhCCeeeeccCccccc
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VV-----KLNEVI--RTVDIVVTATGNKNVV 178 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~-----~l~e~~--~~aDvvi~~~~~~~~i 178 (258)
+|++++|.|. |.+|..+++.++..|.+|++.+.++ +...+...|.. .. +..+.. ...|+++.+++.. .+
T Consensus 144 ~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~-~~ 221 (309)
T cd05289 144 AGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTVGGE-TL 221 (309)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHHcCCCEEEeCCCCchhhccCCCCceEEEECCchH-HH
Confidence 7899999996 9999999999999999988877666 55445555531 11 121111 2369999987765 34
Q ss_pred cHHHHhcCCCCcEEEecCCC
Q psy16115 179 TREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 179 ~~~~l~~~k~g~~ivnvg~~ 198 (258)
...++.+++++.++.+|..
T Consensus 222 -~~~~~~l~~~g~~v~~g~~ 240 (309)
T cd05289 222 -ARSLALVKPGGRLVSIAGP 240 (309)
T ss_pred -HHHHHHHhcCcEEEEEcCC
Confidence 3678889999999999876
No 437
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.50 E-value=0.006 Score=57.93 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=48.2
Q ss_pred cCCCEEEEEcCchHHHH-HHHHHHhCCCEEEEEeCChhhH-HHHHhCCCccc--CHHHHHHhCCeeeecc
Q psy16115 107 FGGKQVVLCGYGEVGKG-CCQSLKGLGCVIYITEIDPICA-LQACMDGFSVV--KLNEVIRTVDIVVTAT 172 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~-~a~~l~~~G~~Vi~~d~~~~~~-~~a~~~g~~~~--~l~e~~~~aDvvi~~~ 172 (258)
.+++++.|+|+|..|++ +|+.|+..|++|+++|.++... ....+.|+... ...+.+.++|+|+..+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~sp 74 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSS 74 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECC
Confidence 37889999999999999 7999999999999999865432 12223455432 2234456789998874
No 438
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.50 E-value=0.0084 Score=54.25 Aligned_cols=89 Identities=15% Similarity=0.229 Sum_probs=58.6
Q ss_pred CCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHhC-------C---Ccc-cCHHHHHHhCCeeeeccCc
Q psy16115 109 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACMD-------G---FSV-VKLNEVIRTVDIVVTATGN 174 (258)
Q Consensus 109 g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~~-------g---~~~-~~l~e~~~~aDvvi~~~~~ 174 (258)
-.+|+|||+|.||..+|..+...|. ++.++|+++.++.- +.+. . +.. .+.+ .+++||+|+.+.|.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG~ 81 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAGA 81 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCCC
Confidence 3599999999999999999987775 69999998765321 1111 1 111 2344 48899999997542
Q ss_pred c---cc------------cc--HHHHhcCCCCcEEEecCCC
Q psy16115 175 K---NV------------VT--REHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 175 ~---~~------------i~--~~~l~~~k~g~~ivnvg~~ 198 (258)
+ +. +. .+.+....+.+++++++-+
T Consensus 82 ~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP 122 (312)
T cd05293 82 RQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNP 122 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccCh
Confidence 1 11 11 0123344678999999866
No 439
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.50 E-value=0.015 Score=43.96 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhCCCEEEEEeCChhhHHHHH---hCCCccc-CHHHHHHhCCeeeeccCcccc--ccHH-HHhcCCCCcEE
Q psy16115 120 VGKGCCQSLKGLGCVIYITEIDPICALQAC---MDGFSVV-KLNEVIRTVDIVVTATGNKNV--VTRE-HMDKMKNGCVV 192 (258)
Q Consensus 120 IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~---~~g~~~~-~l~e~~~~aDvvi~~~~~~~~--i~~~-~l~~~k~g~~i 192 (258)
-+..+++.|+..|++|.++|+.-....... ..++... ++++.++++|++++++..+.. ++-+ ..+.|+++.+|
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~~~~~~~~~~~~~i 97 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEFRELDWEEIAKLMRKPPVI 97 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGGGCCGHHHHHHHSCSSEEE
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHHhccCHHHHHHhcCCCCEE
Confidence 467899999999999999998765543322 1355544 789999999999999866654 3333 34567888899
Q ss_pred Eec
Q psy16115 193 CNM 195 (258)
Q Consensus 193 vnv 195 (258)
+|+
T Consensus 98 iD~ 100 (106)
T PF03720_consen 98 IDG 100 (106)
T ss_dssp EES
T ss_pred EEC
Confidence 885
No 440
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.49 E-value=0.0066 Score=43.24 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=31.1
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC 144 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~ 144 (258)
+++|||.|.+|..+|..++.+|.+|+++++.+.-
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 5899999999999999999999999999887653
No 441
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.49 E-value=0.011 Score=58.70 Aligned_cols=94 Identities=22% Similarity=0.327 Sum_probs=62.7
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh---------------------HHHHHhCCCcc---------cC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC---------------------ALQACMDGFSV---------VK 157 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~---------------------~~~a~~~g~~~---------~~ 157 (258)
.+++|+|||.|+.|..+|..|+..|.+|+++|.++.. .......|++. .+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~ 271 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDIT 271 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccC
Confidence 5799999999999999999999999999999876431 11223445432 13
Q ss_pred HHHHHHhCCeeeeccCcccc-------------ccH-HHHh------cCCCCcEEEecCCCChh
Q psy16115 158 LNEVIRTVDIVVTATGNKNV-------------VTR-EHMD------KMKNGCVVCNMGHSNTE 201 (258)
Q Consensus 158 l~e~~~~aDvvi~~~~~~~~-------------i~~-~~l~------~~k~g~~ivnvg~~~~~ 201 (258)
+++.....|.|++++|.... +.. +.+. ..+.|..++-+|.|+..
T Consensus 272 ~~~~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a 335 (652)
T PRK12814 272 LEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTA 335 (652)
T ss_pred HHHHHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHH
Confidence 44444568999999765421 111 1222 24556778888888433
No 442
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.47 E-value=0.0098 Score=49.17 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=29.1
Q ss_pred EEEEEcCchHHHHHHHHHHhCCC-EEEEEeCCh
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP 142 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~ 142 (258)
+|+|+|+|.+|..+++.|...|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999998 599998774
No 443
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.45 E-value=0.0097 Score=54.81 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=32.7
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCCh
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP 142 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~ 142 (258)
+.+++|+|+|+|.+|..+++.|...|. +++++|.+.
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 688999999999999999999999998 699988753
No 444
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.44 E-value=0.01 Score=55.05 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=32.5
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID 141 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~ 141 (258)
+.+.+|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 688999999999999999999999997 79999876
No 445
>PRK08265 short chain dehydrogenase; Provisional
Probab=96.43 E-value=0.028 Score=48.77 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=35.7
Q ss_pred cCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115 107 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQ 147 (258)
Q Consensus 107 l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~ 147 (258)
+.++++.|.|. |.||+.+++.|...|++|++.++++.+...
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~ 45 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAA 45 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 57899999997 569999999999999999999998765443
No 446
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.43 E-value=0.019 Score=48.76 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=35.2
Q ss_pred cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHH
Q psy16115 107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICAL 146 (258)
Q Consensus 107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~ 146 (258)
++|+++.|.|.+. ||..+++.+...|++|++.++++.+..
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~ 43 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLK 43 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 5789999999754 999999999999999999999887653
No 447
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.42 E-value=0.019 Score=53.15 Aligned_cols=87 Identities=13% Similarity=0.200 Sum_probs=59.1
Q ss_pred CEEEEEcCchHHHHHHHHHHhCC-------CEEEEEeCChhh-----HHHHHhC--------CCc-------ccCHHHHH
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLG-------CVIYITEIDPIC-----ALQACMD--------GFS-------VVKLNEVI 162 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G-------~~Vi~~d~~~~~-----~~~a~~~--------g~~-------~~~l~e~~ 162 (258)
.+|+|+|.|..|.++|..+...| .+|..|.+++.. .+.-.+. ++. ..++++++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 58999999999999999998776 689999887641 1111111 111 23577889
Q ss_pred HhCCeeeeccCccccccHHHHh------cCCCCcEEEecCCC
Q psy16115 163 RTVDIVVTATGNKNVVTREHMD------KMKNGCVVCNMGHS 198 (258)
Q Consensus 163 ~~aDvvi~~~~~~~~i~~~~l~------~~k~g~~ivnvg~~ 198 (258)
+++|+|+.+..... +. +.++ .++++..+|.+.-|
T Consensus 92 ~~aDiIvlAVPsq~-l~-~vl~~l~~~~~l~~~~~iIS~aKG 131 (365)
T PTZ00345 92 EDADLLIFVIPHQF-LE-SVLSQIKENNNLKKHARAISLTKG 131 (365)
T ss_pred hcCCEEEEEcChHH-HH-HHHHHhccccccCCCCEEEEEeCC
Confidence 99999999864433 21 2333 34556688888777
No 448
>PRK13529 malate dehydrogenase; Provisional
Probab=96.40 E-value=0.051 Score=52.64 Aligned_cols=97 Identities=19% Similarity=0.308 Sum_probs=73.9
Q ss_pred CcCcccCCCEEEEEcCchHHHHHHHHHHh----CCC-------EEEEEeCC-----------hhhHHHHHhCCC------
Q psy16115 102 STDVMFGGKQVVLCGYGEVGKGCCQSLKG----LGC-------VIYITEID-----------PICALQACMDGF------ 153 (258)
Q Consensus 102 ~~~~~l~g~~V~IiG~G~IG~~~a~~l~~----~G~-------~Vi~~d~~-----------~~~~~~a~~~g~------ 153 (258)
..+..+...+++++|+|.-|..+|+.+.. .|. +++++|+. +.+...|.....
T Consensus 288 ~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~ 367 (563)
T PRK13529 288 ITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDT 367 (563)
T ss_pred HhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhccccccccc
Confidence 44667889999999999999999999886 587 68888864 122222322110
Q ss_pred --cccCHHHHHHhC--CeeeeccCccccccHHHHhcCCC---CcEEEecCCC
Q psy16115 154 --SVVKLNEVIRTV--DIVVTATGNKNVVTREHMDKMKN---GCVVCNMGHS 198 (258)
Q Consensus 154 --~~~~l~e~~~~a--Dvvi~~~~~~~~i~~~~l~~~k~---g~~ivnvg~~ 198 (258)
...++.++++.+ |++|-+++..++++++.++.|.+ ..+|.-.+.+
T Consensus 368 ~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 419 (563)
T PRK13529 368 EGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNP 419 (563)
T ss_pred ccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCc
Confidence 124789999987 99999998889999999999976 7788888877
No 449
>PRK08223 hypothetical protein; Validated
Probab=96.39 E-value=0.013 Score=52.40 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=32.2
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID 141 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~ 141 (258)
|.+.+|+|+|+|-+|..+++.|...|. ++.++|.+
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 689999999999999999999999998 68888865
No 450
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.38 E-value=0.0097 Score=56.58 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=44.0
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC---CCcccCHHHHHHhCCeeeeccC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD---GFSVVKLNEVIRTVDIVVTATG 173 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~---g~~~~~l~e~~~~aDvvi~~~~ 173 (258)
.|++|+|+|+|.-|+++++.|+. |++|+++|..+.......+. .+......+.+.++|+|+..++
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPg 72 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPG 72 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCC
Confidence 68999999999999999999995 99999999554322111111 1111112344567899988753
No 451
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.38 E-value=0.0085 Score=54.97 Aligned_cols=86 Identities=16% Similarity=0.195 Sum_probs=54.8
Q ss_pred EEEEEcC-chHHHHHHHHHHhC-CCEEE-EEeCChhhHH-HHHhC----C-----CcccCHHHHHHhCCeeeeccCcccc
Q psy16115 111 QVVLCGY-GEVGKGCCQSLKGL-GCVIY-ITEIDPICAL-QACMD----G-----FSVVKLNEVIRTVDIVVTATGNKNV 177 (258)
Q Consensus 111 ~V~IiG~-G~IG~~~a~~l~~~-G~~Vi-~~d~~~~~~~-~a~~~----g-----~~~~~l~e~~~~aDvvi~~~~~~~~ 177 (258)
+|+|+|+ |.+|+.+++.|... +.+++ +++.+..... ..... + ++..+.++...++|++|.|+.+...
T Consensus 2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~s 81 (346)
T TIGR01850 2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGVS 81 (346)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchHH
Confidence 7999998 99999999999977 56766 4454432111 11001 1 1112455555689999999755422
Q ss_pred ccHHHHhc-CCCCcEEEecCCC
Q psy16115 178 VTREHMDK-MKNGCVVCNMGHS 198 (258)
Q Consensus 178 i~~~~l~~-~k~g~~ivnvg~~ 198 (258)
.+.... .+.|..+||.|..
T Consensus 82 --~~~~~~~~~~G~~VIDlS~~ 101 (346)
T TIGR01850 82 --AELAPELLAAGVKVIDLSAD 101 (346)
T ss_pred --HHHHHHHHhCCCEEEeCChh
Confidence 233333 3678999999865
No 452
>PRK05086 malate dehydrogenase; Provisional
Probab=96.37 E-value=0.014 Score=52.76 Aligned_cols=89 Identities=17% Similarity=0.243 Sum_probs=56.5
Q ss_pred CEEEEEcC-chHHHHHHHHHHh-C--CCEEEEEeCChhhHHHHHh--C-C-Cc------ccCHHHHHHhCCeeeeccCcc
Q psy16115 110 KQVVLCGY-GEVGKGCCQSLKG-L--GCVIYITEIDPICALQACM--D-G-FS------VVKLNEVIRTVDIVVTATGNK 175 (258)
Q Consensus 110 ~~V~IiG~-G~IG~~~a~~l~~-~--G~~Vi~~d~~~~~~~~a~~--~-g-~~------~~~l~e~~~~aDvvi~~~~~~ 175 (258)
++++|||+ |.||..++..++. . +..+.++|+++.....+.. . . .. ..++.+.++++|+|+.|.|..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 47999999 9999999988743 3 3468889987543111111 1 1 11 124467788999999997653
Q ss_pred cc--------------ccHHHHhc---CCCCcEEEecCCC
Q psy16115 176 NV--------------VTREHMDK---MKNGCVVCNMGHS 198 (258)
Q Consensus 176 ~~--------------i~~~~l~~---~k~g~~ivnvg~~ 198 (258)
+- +-.+..+. ..+.+++++++-+
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP 120 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 22 11123333 3567899998876
No 453
>KOG2304|consensus
Probab=96.32 E-value=0.0049 Score=52.91 Aligned_cols=102 Identities=14% Similarity=0.227 Sum_probs=64.6
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-----------C-Cc------------------ccC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-----------G-FS------------------VVK 157 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-----------g-~~------------------~~~ 157 (258)
.=+.|+|+|.|.||..+|+.+...|..|+++|.+...+.+|.+- + .+ ..+
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 44789999999999999999999999999999998776654331 0 00 012
Q ss_pred HHHHHHhCCeeeecc-Ccccc---ccHHHHhcCCCCcEE-EecCCCChhhchhhhcC
Q psy16115 158 LNEVIRTVDIVVTAT-GNKNV---VTREHMDKMKNGCVV-CNMGHSNTEIDVNSLRT 209 (258)
Q Consensus 158 l~e~~~~aDvvi~~~-~~~~~---i~~~~l~~~k~g~~i-vnvg~~~~~~~~~~l~~ 209 (258)
..++++++|++|++. ++..+ +.++.-...|+.+++ .|++.-.......++++
T Consensus 90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~ 146 (298)
T KOG2304|consen 90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQR 146 (298)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccC
Confidence 444556688888873 33221 111222345777776 45554444444444443
No 454
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.31 E-value=0.016 Score=50.62 Aligned_cols=102 Identities=17% Similarity=0.192 Sum_probs=59.9
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc---ccCHHHHHH---hCCeeeeccCccccccHH
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---VVKLNEVIR---TVDIVVTATGNKNVVTRE 181 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~---~~~l~e~~~---~aDvvi~~~~~~~~i~~~ 181 (258)
+-.++.|+|.|++++.+++.++..|++|+++|..++........++. ...+++.+. ..|.+++.+ ..+-.|.+
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~vvi~t-h~h~~D~~ 177 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDGVATLVTDEPEAEVAEAPPGSYFLVLT-HDHALDLE 177 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccCCCCceEEecCCHHHHHhcCCCCcEEEEEe-CChHHHHH
Confidence 45799999999999999999999999999999765522111111221 122344443 346666655 33344444
Q ss_pred HHhc-C-C-CCcEEEecCCC-ChhhchhhhcCC
Q psy16115 182 HMDK-M-K-NGCVVCNMGHS-NTEIDVNSLRTP 210 (258)
Q Consensus 182 ~l~~-~-k-~g~~ivnvg~~-~~~~~~~~l~~~ 210 (258)
.++. + + +-.++=-+|.. ..+...+.|...
T Consensus 178 ~L~~aL~~~~~~YIG~lGSr~k~~~~~~~L~~~ 210 (246)
T TIGR02964 178 LCHAALRRGDFAYFGLIGSKTKRARFEHRLRAR 210 (246)
T ss_pred HHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc
Confidence 4443 3 2 33366556654 444445555443
No 455
>PLN02602 lactate dehydrogenase
Probab=96.30 E-value=0.012 Score=54.06 Aligned_cols=88 Identities=14% Similarity=0.240 Sum_probs=58.4
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHhC-------C-Ccc---cCHHHHHHhCCeeeeccCcc
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACMD-------G-FSV---VKLNEVIRTVDIVVTATGNK 175 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~~-------g-~~~---~~l~e~~~~aDvvi~~~~~~ 175 (258)
++|+|||+|.||..+|..+...|. ++..+|+++..+.. +.+. + ... .+. +.+++||+|+.+.|.+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 699999999999999999987775 69999998765321 1111 1 111 123 4488999999985432
Q ss_pred ---c-----cccH---------HHHhcCCCCcEEEecCCC
Q psy16115 176 ---N-----VVTR---------EHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 176 ---~-----~i~~---------~~l~~~k~g~~ivnvg~~ 198 (258)
+ ++.. +.++...+.+++++++-+
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNP 156 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNP 156 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 1 1110 123344678999999865
No 456
>KOG0399|consensus
Probab=96.30 E-value=0.014 Score=60.27 Aligned_cols=65 Identities=26% Similarity=0.356 Sum_probs=50.0
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh---------------------HHHHHhCCCcc---------cC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC---------------------ALQACMDGFSV---------VK 157 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~---------------------~~~a~~~g~~~---------~~ 157 (258)
.|++|+|||-|+-|++.|..|...|..|++|+|+... .....+.|+++ .+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~vs 1863 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHVS 1863 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccccc
Confidence 8999999999999999999999999999999876331 11112235432 35
Q ss_pred HHHHHHhCCeeeecc
Q psy16115 158 LNEVIRTVDIVVTAT 172 (258)
Q Consensus 158 l~e~~~~aDvvi~~~ 172 (258)
++++.+.-|-|+.|+
T Consensus 1864 ~d~l~~~~daiv~a~ 1878 (2142)
T KOG0399|consen 1864 LDELKKENDAIVLAT 1878 (2142)
T ss_pred HHHHhhccCeEEEEe
Confidence 788888888888874
No 457
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=96.28 E-value=0.019 Score=51.33 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=79.6
Q ss_pred cCCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CCCc------ccCHHHHHHh-----CCeeeeccC
Q psy16115 107 FGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFS------VVKLNEVIRT-----VDIVVTATG 173 (258)
Q Consensus 107 l~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~------~~~l~e~~~~-----aDvvi~~~~ 173 (258)
-.|+||+|-| .|.+|..+.+.+|-.|++|+.+--.+++.....+ .|++ ..++.+.+++ .|+.|++.|
T Consensus 149 k~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GIDvyfeNVG 228 (340)
T COG2130 149 KAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFENVG 228 (340)
T ss_pred CCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcCCceeeecCcccHHHHHHHHCCCCeEEEEEcCC
Confidence 3799999999 6889999999999999999999888887665555 5554 3466666654 599999986
Q ss_pred ccccccHHHHhcCCCCcEEEecCCC---Chh-h-----chhhhcCCCceeee
Q psy16115 174 NKNVVTREHMDKMKNGCVVCNMGHS---NTE-I-----DVNSLRTPDLTWEK 216 (258)
Q Consensus 174 ~~~~i~~~~l~~~k~g~~ivnvg~~---~~~-~-----~~~~l~~~~i~~~~ 216 (258)
-. +++ ..+..|+..++|+-+|.- +.+ . .+..|..+++.+.+
T Consensus 229 g~-v~D-Av~~~ln~~aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~G 278 (340)
T COG2130 229 GE-VLD-AVLPLLNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQG 278 (340)
T ss_pred ch-HHH-HHHHhhccccceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEE
Confidence 54 454 788899999999988864 222 1 23345555666655
No 458
>PRK11579 putative oxidoreductase; Provisional
Probab=96.28 E-value=0.015 Score=53.12 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=42.9
Q ss_pred CEEEEEcCchHHHH-HHHHHHhC-CCEEE-EEeCChhhHHHHHhC-CC-cccCHHHHHH--hCCeeeecc
Q psy16115 110 KQVVLCGYGEVGKG-CCQSLKGL-GCVIY-ITEIDPICALQACMD-GF-SVVKLNEVIR--TVDIVVTAT 172 (258)
Q Consensus 110 ~~V~IiG~G~IG~~-~a~~l~~~-G~~Vi-~~d~~~~~~~~a~~~-g~-~~~~l~e~~~--~aDvvi~~~ 172 (258)
-+|||||+|.||.. .+..++.. +++++ ++|+++.+.. ... +. .+.+++++++ +.|+|++|+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~t 72 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPT 72 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcC
Confidence 48999999999984 56666554 67754 5888876543 122 33 2468999986 479999974
No 459
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.28 E-value=0.018 Score=54.25 Aligned_cols=67 Identities=22% Similarity=0.237 Sum_probs=50.0
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC--CCcc-----cCHHHH----HHhCCeeeeccC
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD--GFSV-----VKLNEV----IRTVDIVVTATG 173 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~--g~~~-----~~l~e~----~~~aDvvi~~~~ 173 (258)
...+++.|+|+|.+|+.+++.|...|.+|+++|.++++.....+. +... .+.+.+ +.++|.++.++.
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~ 306 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTN 306 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCC
Confidence 457899999999999999999999999999999999876554442 3321 222222 346899888754
No 460
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.28 E-value=0.012 Score=56.57 Aligned_cols=67 Identities=18% Similarity=0.230 Sum_probs=47.7
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh--HHHHHhC--CCccc---CHHHHHHhCCeeeeccC
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC--ALQACMD--GFSVV---KLNEVIRTVDIVVTATG 173 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~--~~~a~~~--g~~~~---~l~e~~~~aDvvi~~~~ 173 (258)
+.+++|+|+|.|..|+++|+.|+..|.+|.++|..... ....... |+... ...+.+.++|+|+..++
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~ 78 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPG 78 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCC
Confidence 46889999999999999999999999999999975432 1111222 33321 12345567999998753
No 461
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.27 E-value=0.018 Score=54.46 Aligned_cols=67 Identities=18% Similarity=0.276 Sum_probs=48.3
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhH-HHHHh---CCCccc---CHHHHHHhCCeeeeccC
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA-LQACM---DGFSVV---KLNEVIRTVDIVVTATG 173 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~-~~a~~---~g~~~~---~l~e~~~~aDvvi~~~~ 173 (258)
+.+++++|+|.|.+|+.+|+.|...|++|.++|..+... ....+ .|+... ..+....+.|+|+..++
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spg 76 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPG 76 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCC
Confidence 468999999999999999999999999999999765431 11122 254321 12344567899999753
No 462
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.26 E-value=0.032 Score=50.39 Aligned_cols=91 Identities=21% Similarity=0.237 Sum_probs=63.6
Q ss_pred ccCCCEEEEEcC---chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCc--------
Q psy16115 106 MFGGKQVVLCGY---GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGN-------- 174 (258)
Q Consensus 106 ~l~g~~V~IiG~---G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~-------- 174 (258)
.+.|++|+++|- +++..+.+..+..+|++++++.+....... ...-....++++.++++|+|+.....
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~-~~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~ 231 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEG-MPEYGVHTDLDEVIEDADVVMMLRVQKERMDGGL 231 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccc-ccceEEECCHHHHhCCCCEEEECCcccccccccc
Confidence 378999999997 589999999999999999888654332111 00001245789999999999885311
Q ss_pred ---------cccccHHHHhcCCCCcEEEecCC
Q psy16115 175 ---------KNVVTREHMDKMKNGCVVCNMGH 197 (258)
Q Consensus 175 ---------~~~i~~~~l~~~k~g~~ivnvg~ 197 (258)
...++++.++.+|+++++..+..
T Consensus 232 ~~~~~~~~~~y~v~~~ll~~a~~~~~~mHcLP 263 (305)
T PRK00856 232 LPSYEEYKRSYGLTAERLALAKPDAIVMHPGP 263 (305)
T ss_pred hHHHHHHhccCccCHHHHhhcCCCCEEECCCC
Confidence 23466666777777777776654
No 463
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.26 E-value=0.011 Score=56.53 Aligned_cols=67 Identities=24% Similarity=0.347 Sum_probs=46.8
Q ss_pred cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh-HHH--HHhCCCccc---CHHHHHHhCCeeeeccC
Q psy16115 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQ--ACMDGFSVV---KLNEVIRTVDIVVTATG 173 (258)
Q Consensus 107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~-~~~--a~~~g~~~~---~l~e~~~~aDvvi~~~~ 173 (258)
+.|++|+|+|+|.-|+++++.|+..|++|+++|.++.. ... ..+.+.... ...+.+.+.|+|+..++
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~Spg 78 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPG 78 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCC
Confidence 46899999999999999999999999999999965322 111 111122111 12345667899998753
No 464
>PLN02527 aspartate carbamoyltransferase
Probab=96.21 E-value=0.064 Score=48.42 Aligned_cols=92 Identities=21% Similarity=0.181 Sum_probs=62.6
Q ss_pred ccCCCEEEEEcCc---hHHHHHHHHHHhC-CCEEEEEeCChh-----hHHHHHhCCCc---ccCHHHHHHhCCeeeeccC
Q psy16115 106 MFGGKQVVLCGYG---EVGKGCCQSLKGL-GCVIYITEIDPI-----CALQACMDGFS---VVKLNEVIRTVDIVVTATG 173 (258)
Q Consensus 106 ~l~g~~V~IiG~G---~IG~~~a~~l~~~-G~~Vi~~d~~~~-----~~~~a~~~g~~---~~~l~e~~~~aDvvi~~~~ 173 (258)
.+.|.+|+++|-+ ++..+.+..+..+ |++|.++.+... -...+.+.|.. ..++++.++++|+|+....
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~ 227 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRI 227 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCc
Confidence 3789999999976 6899999998887 999888755322 12223344543 3578999999999998421
Q ss_pred ----------------ccccccHHHHhcCCCCcEEEecCC
Q psy16115 174 ----------------NKNVVTREHMDKMKNGCVVCNMGH 197 (258)
Q Consensus 174 ----------------~~~~i~~~~l~~~k~g~~ivnvg~ 197 (258)
....++.+.++..+++++|..+..
T Consensus 228 q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclP 267 (306)
T PLN02527 228 QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLP 267 (306)
T ss_pred chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCC
Confidence 123455555666677776665543
No 465
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=96.21 E-value=0.011 Score=53.78 Aligned_cols=87 Identities=18% Similarity=0.295 Sum_probs=54.0
Q ss_pred EEEEEcCchHHHHHHHHHHhCC----CEEEEE-eCChhhH-HHHHhC---------------------C--Cccc---CH
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLG----CVIYIT-EIDPICA-LQACMD---------------------G--FSVV---KL 158 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G----~~Vi~~-d~~~~~~-~~a~~~---------------------g--~~~~---~l 158 (258)
+|+|.|+|+||+.+.+.+...+ .+|..+ |....+. ....+. | +... ++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p 80 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTP 80 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCCh
Confidence 5899999999999999988653 565554 4333221 111111 1 0011 23
Q ss_pred HHHH---HhCCeeeeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115 159 NEVI---RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 159 ~e~~---~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
++.- .++|+|++|+|..... +...+.++.|+..|+++.+
T Consensus 81 ~~~~w~~~gvDiVie~tG~~~s~-e~a~~~l~aGa~~V~~SaP 122 (325)
T TIGR01532 81 EALPWRALGVDLVLDCTGVYGNR-EQGERHIRAGAKRVLFSHP 122 (325)
T ss_pred hhccccccCCCEEEEccchhccH-HHHHHHHHcCCeEEEecCC
Confidence 3321 3789999999876444 3556677889888888865
No 466
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=96.19 E-value=0.032 Score=49.11 Aligned_cols=88 Identities=22% Similarity=0.245 Sum_probs=65.7
Q ss_pred CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-C----HHHHHH------hCCeeeeccCcc
Q psy16115 108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-K----LNEVIR------TVDIVVTATGNK 175 (258)
Q Consensus 108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~----l~e~~~------~aDvvi~~~~~~ 175 (258)
.|++++|.| .|.+|+.+++.++..|++|+..+++ .+...+.+.|.+.. + ..+.+. ..|+++.+.+..
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~ 222 (326)
T cd08272 144 AGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS-EKAAFARSLGADPIIYYRETVVEYVAEHTGGRGFDVVFDTVGGE 222 (326)
T ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEech-HHHHHHHHcCCCEEEecchhHHHHHHHhcCCCCCcEEEECCChH
Confidence 789999999 6899999999999999998888776 66655656665321 1 222221 379999987764
Q ss_pred ccccHHHHhcCCCCcEEEecCCC
Q psy16115 176 NVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 176 ~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
.+. +.++.+++++.++++|..
T Consensus 223 -~~~-~~~~~l~~~g~~v~~~~~ 243 (326)
T cd08272 223 -TLD-ASFEAVALYGRVVSILGG 243 (326)
T ss_pred -HHH-HHHHHhccCCEEEEEecC
Confidence 343 678889999999988755
No 467
>PLN02342 ornithine carbamoyltransferase
Probab=96.18 E-value=0.06 Score=49.46 Aligned_cols=93 Identities=16% Similarity=0.088 Sum_probs=66.8
Q ss_pred ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhh-----HHHHHhCCC---c-ccCHHHHHHhCCeeeecc---
Q psy16115 106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPIC-----ALQACMDGF---S-VVKLNEVIRTVDIVVTAT--- 172 (258)
Q Consensus 106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~~a~~~g~---~-~~~l~e~~~~aDvvi~~~--- 172 (258)
.+.|.+|+++|-+. +.++.+..+..+|++|.++.+.... ...+.+.|. . ..++++.++++|+|+.-.
T Consensus 191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s 270 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWAS 270 (348)
T ss_pred CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccc
Confidence 47899999999865 9999999999999998887543221 112333342 2 357899999999999852
Q ss_pred -C------------ccccccHHHHhcCCCCcEEEecCCC
Q psy16115 173 -G------------NKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 173 -~------------~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
+ ....++.+.++.+|++++|..++..
T Consensus 271 ~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpLP~ 309 (348)
T PLN02342 271 MGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCLPA 309 (348)
T ss_pred cccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCCCc
Confidence 1 1246777778888888888777654
No 468
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.18 E-value=0.016 Score=54.76 Aligned_cols=65 Identities=9% Similarity=0.079 Sum_probs=46.7
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhH--HHHHh--CCCccc---CHHHHHHhCCeeeecc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA--LQACM--DGFSVV---KLNEVIRTVDIVVTAT 172 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~--~~a~~--~g~~~~---~l~e~~~~aDvvi~~~ 172 (258)
.+-+++|+|.|.+|+++|+.|+..|++|.++|..+... ....+ .|+... ...+.+.++|+|+..+
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp 76 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISP 76 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECC
Confidence 56799999999999999999999999999999765321 11112 254431 1234466789998875
No 469
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.18 E-value=0.016 Score=53.61 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=43.7
Q ss_pred CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCC---CcccC---HHHHHHhCCeeee
Q psy16115 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG---FSVVK---LNEVIRTVDIVVT 170 (258)
Q Consensus 110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g---~~~~~---l~e~~~~aDvvi~ 170 (258)
++|||+|.|..|+++++.++.+|.+|+++|.++.......... ..+.+ +.++++.+|+|..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 7899999999999999999999999999998765422111111 11222 5556677888743
No 470
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.16 E-value=0.016 Score=59.98 Aligned_cols=67 Identities=15% Similarity=0.031 Sum_probs=50.3
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh------------h---------HHHHHhCCCcc---------cC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI------------C---------ALQACMDGFSV---------VK 157 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~------------~---------~~~a~~~g~~~---------~~ 157 (258)
.|++|+|||.|+-|+.+|..|...|.+|+++|+.+. + .......|++. .+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit 384 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTAT 384 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEe
Confidence 699999999999999999999999999999986421 1 11223345541 24
Q ss_pred HHHHHH-hCCeeeeccCc
Q psy16115 158 LNEVIR-TVDIVVTATGN 174 (258)
Q Consensus 158 l~e~~~-~aDvvi~~~~~ 174 (258)
++++.+ +.|.|++++|.
T Consensus 385 ~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 385 LEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred HHHhccccCCEEEEeCCC
Confidence 666665 58999999765
No 471
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=96.12 E-value=0.085 Score=51.31 Aligned_cols=96 Identities=17% Similarity=0.291 Sum_probs=73.4
Q ss_pred CcCcccCCCEEEEEcCchHHHHHHHHHHh-----CCC-------EEEEEeCC------------hhhHHHHHhCCCcccC
Q psy16115 102 STDVMFGGKQVVLCGYGEVGKGCCQSLKG-----LGC-------VIYITEID------------PICALQACMDGFSVVK 157 (258)
Q Consensus 102 ~~~~~l~g~~V~IiG~G~IG~~~a~~l~~-----~G~-------~Vi~~d~~------------~~~~~~a~~~g~~~~~ 157 (258)
..+..+...+++++|+|.-|..+|+.+.. .|. +++++|+. +.+...+.. .-...+
T Consensus 314 ~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~-~~~~~~ 392 (581)
T PLN03129 314 ATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHD-HEPGAS 392 (581)
T ss_pred HhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhh-cccCCC
Confidence 34567889999999999999999999887 466 58888754 111222222 223458
Q ss_pred HHHHHHh--CCeeeeccCccccccHHHHhcCC---CCcEEEecCCC
Q psy16115 158 LNEVIRT--VDIVVTATGNKNVVTREHMDKMK---NGCVVCNMGHS 198 (258)
Q Consensus 158 l~e~~~~--aDvvi~~~~~~~~i~~~~l~~~k---~g~~ivnvg~~ 198 (258)
+.++++. .|++|-+++..+.++++.++.|. +..+|.-.+.+
T Consensus 393 L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 393 LLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred HHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 9999998 89999999888999999999995 77788877776
No 472
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.11 E-value=0.023 Score=51.72 Aligned_cols=88 Identities=16% Similarity=0.229 Sum_probs=55.8
Q ss_pred EEEEEcC-chHHHHHHHHHHhCC-------CEEEEEeCChhh--HHH-HHhC--------C-C-cccCHHHHHHhCCeee
Q psy16115 111 QVVLCGY-GEVGKGCCQSLKGLG-------CVIYITEIDPIC--ALQ-ACMD--------G-F-SVVKLNEVIRTVDIVV 169 (258)
Q Consensus 111 ~V~IiG~-G~IG~~~a~~l~~~G-------~~Vi~~d~~~~~--~~~-a~~~--------g-~-~~~~l~e~~~~aDvvi 169 (258)
+|+|+|+ |.||..++..|...+ .++.++|+++.. +.. +.+. + . ...++.+.++++|+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 6999999 999999999998744 379999986532 111 1000 0 0 0234567788999999
Q ss_pred eccCcccccc--------------H---HHHhcC-CCCcEEEecCCC
Q psy16115 170 TATGNKNVVT--------------R---EHMDKM-KNGCVVCNMGHS 198 (258)
Q Consensus 170 ~~~~~~~~i~--------------~---~~l~~~-k~g~~ivnvg~~ 198 (258)
.+.+.+..-+ + +.+... +++++++.++.+
T Consensus 84 ~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 130 (325)
T cd01336 84 LVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNP 130 (325)
T ss_pred EeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCc
Confidence 9754321100 1 123333 468899998865
No 473
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.06 E-value=0.029 Score=53.52 Aligned_cols=68 Identities=22% Similarity=0.300 Sum_probs=49.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh---------------------HHHHHhCCCcc---------cC
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC---------------------ALQACMDGFSV---------VK 157 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~---------------------~~~a~~~g~~~---------~~ 157 (258)
.+++|+|||.|+.|..+|..|+..|.+|+++|+.+.- .....+.|++. .+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~ 221 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDIT 221 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCcCC
Confidence 6899999999999999999999999999999865321 11233345432 12
Q ss_pred HHHHHHhCCeeeeccCcc
Q psy16115 158 LNEVIRTVDIVVTATGNK 175 (258)
Q Consensus 158 l~e~~~~aDvvi~~~~~~ 175 (258)
.++.....|.+++++|..
T Consensus 222 ~~~~~~~~d~vvlAtGa~ 239 (471)
T PRK12810 222 AEELLAEYDAVFLGTGAY 239 (471)
T ss_pred HHHHHhhCCEEEEecCCC
Confidence 345555789999997654
No 474
>PRK07806 short chain dehydrogenase; Provisional
Probab=96.05 E-value=0.052 Score=46.37 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=32.1
Q ss_pred cCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115 107 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDP 142 (258)
Q Consensus 107 l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~ 142 (258)
+.|+++.|.|. |.||+.+++.|...|++|++++++.
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 57899999997 6799999999999999998888764
No 475
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.05 E-value=0.028 Score=50.70 Aligned_cols=63 Identities=29% Similarity=0.352 Sum_probs=47.8
Q ss_pred CEEEEEcCchHH-HHHHHHHHhCC--CE-EEEEeCChhhHHH-HHhCCCc--ccCHHHHHHh--CCeeeecc
Q psy16115 110 KQVVLCGYGEVG-KGCCQSLKGLG--CV-IYITEIDPICALQ-ACMDGFS--VVKLNEVIRT--VDIVVTAT 172 (258)
Q Consensus 110 ~~V~IiG~G~IG-~~~a~~l~~~G--~~-Vi~~d~~~~~~~~-a~~~g~~--~~~l~e~~~~--aDvvi~~~ 172 (258)
.+|||||+|.++ ...+..++..+ +. +-++|+++++++. +.+.+.. +.+++++++. .|+|++|+
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iat 75 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIAT 75 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcC
Confidence 589999999766 45777887776 45 6668999988653 5566763 6689999985 58999974
No 476
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=96.02 E-value=0.09 Score=50.92 Aligned_cols=97 Identities=19% Similarity=0.289 Sum_probs=73.7
Q ss_pred CcCcccCCCEEEEEcCchHHHHHHHHHHh----CCC-------EEEEEeCC------------hhhHHHHHhC-CCc---
Q psy16115 102 STDVMFGGKQVVLCGYGEVGKGCCQSLKG----LGC-------VIYITEID------------PICALQACMD-GFS--- 154 (258)
Q Consensus 102 ~~~~~l~g~~V~IiG~G~IG~~~a~~l~~----~G~-------~Vi~~d~~------------~~~~~~a~~~-g~~--- 154 (258)
..+..+...+++++|+|.-|..+|+.+.. .|. +++++|+. +.+...|... ...
T Consensus 290 ~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~ 369 (559)
T PTZ00317 290 LSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSS 369 (559)
T ss_pred HhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhcccccccccc
Confidence 34567899999999999999999998874 687 58888753 1222223321 111
Q ss_pred ccCHHHHHHhC--CeeeeccCccccccHHHHhcCCC---CcEEEecCCC
Q psy16115 155 VVKLNEVIRTV--DIVVTATGNKNVVTREHMDKMKN---GCVVCNMGHS 198 (258)
Q Consensus 155 ~~~l~e~~~~a--Dvvi~~~~~~~~i~~~~l~~~k~---g~~ivnvg~~ 198 (258)
..++.|+++.+ |++|-+++..+.++++.++.|.+ ..+|.-.+.+
T Consensus 370 ~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNP 418 (559)
T PTZ00317 370 LKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNP 418 (559)
T ss_pred CCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 45899999988 99999998889999999999874 7788877777
No 477
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.98 E-value=0.025 Score=55.09 Aligned_cols=67 Identities=18% Similarity=0.286 Sum_probs=49.1
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh---------CC------C-----cccC---HHHHHH
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM---------DG------F-----SVVK---LNEVIR 163 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~---------~g------~-----~~~~---l~e~~~ 163 (258)
.|++++|.|+ |.||+.+++.|...|++|++++|+..+...... .| + +..+ +.+.+.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLg 158 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALG 158 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhc
Confidence 7899999996 789999999999999999999998876543211 01 1 1122 344566
Q ss_pred hCCeeeeccCc
Q psy16115 164 TVDIVVTATGN 174 (258)
Q Consensus 164 ~aDvvi~~~~~ 174 (258)
++|+||.+.|.
T Consensus 159 giDiVVn~AG~ 169 (576)
T PLN03209 159 NASVVICCIGA 169 (576)
T ss_pred CCCEEEEcccc
Confidence 78999998653
No 478
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.98 E-value=0.029 Score=50.41 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=46.3
Q ss_pred EEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc--------cCHHHHHHhCCeeeecc
Q psy16115 111 QVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--------VKLNEVIRTVDIVVTAT 172 (258)
Q Consensus 111 ~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~--------~~l~e~~~~aDvvi~~~ 172 (258)
+|+|.| .|.||+.+++.|...|.+|++..|++.+.......+++. .++.+.++++|+|+.+.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~ 72 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAS 72 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence 789999 599999999999999999999998875533222234331 23566678899998864
No 479
>PRK06182 short chain dehydrogenase; Validated
Probab=95.96 E-value=0.04 Score=48.06 Aligned_cols=66 Identities=18% Similarity=0.292 Sum_probs=47.8
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-----ccC---HHHHHH-------hCCeeeec
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-----VVK---LNEVIR-------TVDIVVTA 171 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-----~~~---l~e~~~-------~aDvvi~~ 171 (258)
.+++++|.|. |.||+.+++.+...|++|++.++++.++......+.. ..+ ++++++ ..|+++.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~ 81 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNN 81 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 5789999996 5699999999999999999999988766543333332 122 233333 46999987
Q ss_pred cC
Q psy16115 172 TG 173 (258)
Q Consensus 172 ~~ 173 (258)
.+
T Consensus 82 ag 83 (273)
T PRK06182 82 AG 83 (273)
T ss_pred CC
Confidence 64
No 480
>PRK05993 short chain dehydrogenase; Provisional
Probab=95.96 E-value=0.035 Score=48.73 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=37.7
Q ss_pred CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCC
Q psy16115 108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF 153 (258)
Q Consensus 108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~ 153 (258)
.+++++|.|. |.||+.+++.+...|++|++.++++..+......++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~~ 49 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEGL 49 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCc
Confidence 4689999998 779999999999999999999999877654444443
No 481
>PRK05693 short chain dehydrogenase; Provisional
Probab=95.93 E-value=0.049 Score=47.51 Aligned_cols=64 Identities=19% Similarity=0.385 Sum_probs=45.1
Q ss_pred CEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-----ccC---HHHHHH-------hCCeeeeccC
Q psy16115 110 KQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-----VVK---LNEVIR-------TVDIVVTATG 173 (258)
Q Consensus 110 ~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-----~~~---l~e~~~-------~aDvvi~~~~ 173 (258)
|+++|.|+ |.||+.+++.+...|++|+++++++.+.......+.. ..+ ++++++ ..|+++.+.+
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 81 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNAG 81 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 68899996 5599999999999999999999987765443333332 112 222222 4699998764
No 482
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=95.91 E-value=0.09 Score=48.15 Aligned_cols=92 Identities=18% Similarity=0.074 Sum_probs=66.2
Q ss_pred ccCCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChh----h-HHH----HHhCCCc---ccCHHHHHHhCCeeeecc
Q psy16115 106 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPI----C-ALQ----ACMDGFS---VVKLNEVIRTVDIVVTAT 172 (258)
Q Consensus 106 ~l~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~----~-~~~----a~~~g~~---~~~l~e~~~~aDvvi~~~ 172 (258)
.+.|.+|+++|-+ ++..+.+..+..+|++|.++.+... . ... +...|.. ..++++.++++|+|+.-.
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~ 230 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV 230 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 4789999999984 4999999999999999988755421 1 111 1223432 357899999999998821
Q ss_pred -----C-------------ccccccHHHHhcCCCCcEEEecCC
Q psy16115 173 -----G-------------NKNVVTREHMDKMKNGCVVCNMGH 197 (258)
Q Consensus 173 -----~-------------~~~~i~~~~l~~~k~g~~ivnvg~ 197 (258)
+ ....++++.++.+|++++|..+..
T Consensus 231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP 273 (338)
T PRK02255 231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLP 273 (338)
T ss_pred cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCC
Confidence 1 124677777888888888887775
No 483
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.90 E-value=0.014 Score=54.92 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=44.6
Q ss_pred EEEEEcCchHHHHHHH---HH---HhCCCEEEEEeCChhhHHHHHh--------CCC----c-ccCHHHHHHhCCeeeec
Q psy16115 111 QVVLCGYGEVGKGCCQ---SL---KGLGCVIYITEIDPICALQACM--------DGF----S-VVKLNEVIRTVDIVVTA 171 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~---~l---~~~G~~Vi~~d~~~~~~~~a~~--------~g~----~-~~~l~e~~~~aDvvi~~ 171 (258)
+|+|||.|.+|...+. .+ ...|.+|+++|+++++++.... .+. . ..++.+.+++||+|+++
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~a 81 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINT 81 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEe
Confidence 6999999999998555 33 2335689999999887654221 111 1 23678899999999998
Q ss_pred c
Q psy16115 172 T 172 (258)
Q Consensus 172 ~ 172 (258)
.
T Consensus 82 i 82 (423)
T cd05297 82 I 82 (423)
T ss_pred e
Confidence 5
No 484
>PRK12742 oxidoreductase; Provisional
Probab=95.90 E-value=0.084 Score=44.71 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=29.8
Q ss_pred cCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeC
Q psy16115 107 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEI 140 (258)
Q Consensus 107 l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~ 140 (258)
+.|++++|.|. |.||+.+++.+...|++|++..+
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~ 38 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA 38 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence 57899999996 66999999999999999877654
No 485
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=95.90 E-value=0.063 Score=48.42 Aligned_cols=92 Identities=20% Similarity=0.161 Sum_probs=66.0
Q ss_pred ccCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhH-----HH-HHhCCCc---ccCHHHHHHhCCeeeecc---
Q psy16115 106 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICA-----LQ-ACMDGFS---VVKLNEVIRTVDIVVTAT--- 172 (258)
Q Consensus 106 ~l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~-----~~-a~~~g~~---~~~l~e~~~~aDvvi~~~--- 172 (258)
.+.|.+|+++|- +++.++.+..+..+|++|.++.+..... +. +.+.|.. ..++++.++++|+|+.-.
T Consensus 149 ~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~ 228 (304)
T PRK00779 149 SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVS 228 (304)
T ss_pred CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccc
Confidence 378999999997 6799999999999999988875432211 11 3345543 357899999999998741
Q ss_pred -C------------ccccccHHHHhcCCCCcEEEecCC
Q psy16115 173 -G------------NKNVVTREHMDKMKNGCVVCNMGH 197 (258)
Q Consensus 173 -~------------~~~~i~~~~l~~~k~g~~ivnvg~ 197 (258)
+ ....++.+.++.+|++++|..++.
T Consensus 229 ~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHplP 266 (304)
T PRK00779 229 MGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCLP 266 (304)
T ss_pred cccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCCC
Confidence 1 233566667777788888777664
No 486
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=95.87 E-value=0.016 Score=50.96 Aligned_cols=87 Identities=18% Similarity=0.331 Sum_probs=58.8
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHHHHh----CCCc---c--cCHHHHH---HhCCeeeecc-
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACM----DGFS---V--VKLNEVI---RTVDIVVTAT- 172 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~a~~----~g~~---~--~~l~e~~---~~aDvvi~~~- 172 (258)
.|++|+.+|+|. |......++..|. +|+++|+++.....+++ .+.. . .+++++- ...|+|+...
T Consensus 77 ~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 77 PGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 789999999999 8877666666664 69999999987766554 2321 1 1233221 1468887642
Q ss_pred -----CccccccHHHHhcCCCCcEEEecC
Q psy16115 173 -----GNKNVVTREHMDKMKNGCVVCNMG 196 (258)
Q Consensus 173 -----~~~~~i~~~~l~~~k~g~~ivnvg 196 (258)
....++. +..+.+|+|++++-.+
T Consensus 156 ~~~~~d~~~~l~-~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 156 INLSPDKERVFK-EAFRVLKPGGRFAISD 183 (272)
T ss_pred ccCCCCHHHHHH-HHHHHcCCCcEEEEEE
Confidence 2234453 7888999999997654
No 487
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=95.83 E-value=0.076 Score=48.55 Aligned_cols=93 Identities=18% Similarity=0.135 Sum_probs=66.0
Q ss_pred ccCCCEEEEEcCc--hHHHHHHHHHHhCCCEEEEEeCChhhH-----H----HHHhCCCc---ccCHHHHHHhCCeeeec
Q psy16115 106 MFGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEIDPICA-----L----QACMDGFS---VVKLNEVIRTVDIVVTA 171 (258)
Q Consensus 106 ~l~g~~V~IiG~G--~IG~~~a~~l~~~G~~Vi~~d~~~~~~-----~----~a~~~g~~---~~~l~e~~~~aDvvi~~ 171 (258)
.+.|.+|+++|-+ .+.++.+..+..+|++|.++.+..... . .+.+.|.. ..++++.++++|+|+.-
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999986 489999999999999988875532211 1 12234543 35799999999999883
Q ss_pred c----C-------------ccccccHHHHhcC-CCCcEEEecCCC
Q psy16115 172 T----G-------------NKNVVTREHMDKM-KNGCVVCNMGHS 198 (258)
Q Consensus 172 ~----~-------------~~~~i~~~~l~~~-k~g~~ivnvg~~ 198 (258)
. + ....++.+.++.. |++++|..++..
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~lP~ 277 (334)
T PRK01713 233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCLPA 277 (334)
T ss_pred ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCCCC
Confidence 1 1 1234666777775 788888887754
No 488
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=95.81 E-value=0.0091 Score=50.90 Aligned_cols=66 Identities=21% Similarity=0.327 Sum_probs=44.4
Q ss_pred CCCEEEEEcCchHHHHHHHHH--HhCCCEEE-EEeCChhhHHHHHhCCCc---ccCHHHHHHh--CCeeeeccCc
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSL--KGLGCVIY-ITEIDPICALQACMDGFS---VVKLNEVIRT--VDIVVTATGN 174 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l--~~~G~~Vi-~~d~~~~~~~~a~~~g~~---~~~l~e~~~~--aDvvi~~~~~ 174 (258)
...+++|+|+|.+|+.+++.+ ...|++++ ++|.++.+.... ..+.. ..+++++++. .|++++|+..
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~-i~g~~v~~~~~l~~li~~~~iD~ViIa~P~ 156 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTK-IGGIPVYHIDELEEVVKENDIEIGILTVPA 156 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCE-eCCeEEcCHHHHHHHHHHCCCCEEEEeCCc
Confidence 567999999999999998863 35688855 478876543211 12221 2356677764 8999998643
No 489
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=95.81 E-value=0.021 Score=52.27 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=53.5
Q ss_pred CEEEEEcC-chHHHHHHHHHHhC-CCEEEE-EeCChhhHHHHHh----C---CCcccCHHH-HHHhCCeeeeccCccccc
Q psy16115 110 KQVVLCGY-GEVGKGCCQSLKGL-GCVIYI-TEIDPICALQACM----D---GFSVVKLNE-VIRTVDIVVTATGNKNVV 178 (258)
Q Consensus 110 ~~V~IiG~-G~IG~~~a~~l~~~-G~~Vi~-~d~~~~~~~~a~~----~---g~~~~~l~e-~~~~aDvvi~~~~~~~~i 178 (258)
.+|+|+|+ |.+|+.+++.+... +.+++. +++.......+.. . ...+.++++ ...++|+|++|+.+....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~~ 82 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVSM 82 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHHH
Confidence 58999997 99999999999877 567544 5532211111111 1 111222332 346799999997554322
Q ss_pred cHHHHhcCCCCcEEEecCCC
Q psy16115 179 TREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 179 ~~~~l~~~k~g~~ivnvg~~ 198 (258)
+ -..+.++.|..+||.+..
T Consensus 83 ~-~v~~a~~aG~~VID~S~~ 101 (343)
T PRK00436 83 D-LAPQLLEAGVKVIDLSAD 101 (343)
T ss_pred H-HHHHHHhCCCEEEECCcc
Confidence 1 223334678999999865
No 490
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.79 E-value=0.047 Score=52.32 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=31.9
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP 142 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~ 142 (258)
.+++|+|||.|+.|..+|..|+..|.+|++++..+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 57899999999999999999999999999997653
No 491
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.78 E-value=0.024 Score=51.18 Aligned_cols=88 Identities=19% Similarity=0.232 Sum_probs=57.5
Q ss_pred EEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHH-HHHhC--CC------c---ccCHHHHHHhCCeeeeccCcc-
Q psy16115 111 QVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QACMD--GF------S---VVKLNEVIRTVDIVVTATGNK- 175 (258)
Q Consensus 111 ~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~-~a~~~--g~------~---~~~l~e~~~~aDvvi~~~~~~- 175 (258)
+|+|||+|.||..+|..+...|. ++..+|+++.+.. .+... .. . ...-.+.+++||+|+.+.|.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~~ 80 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCCC
Confidence 58999999999999998887775 6999999876532 12211 10 1 112346788999999986432
Q ss_pred --ccc---------cH----H---HHhcCCCCcEEEecCCC
Q psy16115 176 --NVV---------TR----E---HMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 176 --~~i---------~~----~---~l~~~k~g~~ivnvg~~ 198 (258)
+.- |. + .+..-.++++++.++-+
T Consensus 81 kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNP 121 (307)
T cd05290 81 DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNP 121 (307)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 211 11 1 12333578899998876
No 492
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=95.78 E-value=0.082 Score=47.68 Aligned_cols=92 Identities=20% Similarity=0.186 Sum_probs=65.6
Q ss_pred cCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhh-----HHH----HHhCCCc---ccCHHHHHHhCCeeeecc-
Q psy16115 107 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPIC-----ALQ----ACMDGFS---VVKLNEVIRTVDIVVTAT- 172 (258)
Q Consensus 107 l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~~----a~~~g~~---~~~l~e~~~~aDvvi~~~- 172 (258)
+.|.+|+++|- +++.++.+..+..+|++|.++.+.... ... +.+.|.. ..++++.++++|+|+.-.
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w 225 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW 225 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 78999999997 569999999999999998887543221 111 2234532 357899999999998831
Q ss_pred ---C------------ccccccHHHHhcCCCCcEEEecCCC
Q psy16115 173 ---G------------NKNVVTREHMDKMKNGCVVCNMGHS 198 (258)
Q Consensus 173 ---~------------~~~~i~~~~l~~~k~g~~ivnvg~~ 198 (258)
+ ....++++.++.+|+++++..++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHplP~ 266 (304)
T TIGR00658 226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCLPA 266 (304)
T ss_pred ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCCCC
Confidence 1 1235777777778888888777653
No 493
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.77 E-value=0.054 Score=48.19 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=36.9
Q ss_pred cccCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115 105 VMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQ 147 (258)
Q Consensus 105 ~~l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~ 147 (258)
..+.|++++|.|. |.||+.+++.|...|++|++.++++.+++.
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~ 79 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDA 79 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 3468999999997 569999999999999999999998766543
No 494
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=95.77 E-value=0.02 Score=52.07 Aligned_cols=89 Identities=16% Similarity=0.185 Sum_probs=56.7
Q ss_pred CEEEEEcC-chHHHHHHHHHHhCCC-------EEEEEeCChhh--HH-HHHhC--CC-------c-ccCHHHHHHhCCee
Q psy16115 110 KQVVLCGY-GEVGKGCCQSLKGLGC-------VIYITEIDPIC--AL-QACMD--GF-------S-VVKLNEVIRTVDIV 168 (258)
Q Consensus 110 ~~V~IiG~-G~IG~~~a~~l~~~G~-------~Vi~~d~~~~~--~~-~a~~~--g~-------~-~~~l~e~~~~aDvv 168 (258)
-+|+|||+ |.||..+|..+...|. ++..+|+.+.. +. .+.+. .. . ..+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999999987774 68999986421 11 12111 11 1 12445778899999
Q ss_pred eeccCccc---------------ccc--HHHHhcCCC-CcEEEecCCC
Q psy16115 169 VTATGNKN---------------VVT--REHMDKMKN-GCVVCNMGHS 198 (258)
Q Consensus 169 i~~~~~~~---------------~i~--~~~l~~~k~-g~~ivnvg~~ 198 (258)
+.+.|.+. ++. .+.+....+ .++++.++.+
T Consensus 84 VitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 131 (323)
T TIGR01759 84 LLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNP 131 (323)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 99854321 111 012333344 8999999865
No 495
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.76 E-value=0.052 Score=46.01 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=34.9
Q ss_pred cCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHH
Q psy16115 107 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL 146 (258)
Q Consensus 107 l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~ 146 (258)
+.+++++|.|. |.||+.+++.|...|++|++.++++.+..
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~ 44 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELE 44 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHH
Confidence 46899999996 77999999999999999999999886644
No 496
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.75 E-value=0.025 Score=51.39 Aligned_cols=91 Identities=15% Similarity=0.127 Sum_probs=57.7
Q ss_pred cCCCEEEEEcC-chHHHHHHHHHHhCC--CEEEEEeCChhhHHHHHhC-----CCccc------CHHHHHHhCCeeeecc
Q psy16115 107 FGGKQVVLCGY-GEVGKGCCQSLKGLG--CVIYITEIDPICALQACMD-----GFSVV------KLNEVIRTVDIVVTAT 172 (258)
Q Consensus 107 l~g~~V~IiG~-G~IG~~~a~~l~~~G--~~Vi~~d~~~~~~~~a~~~-----g~~~~------~l~e~~~~aDvvi~~~ 172 (258)
++.++|+|+|+ |.||..++..+...+ .++..+|++.... .+.+. ..... +..+.++++|+|+.+.
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g-~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPG-VAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcc-cccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 36789999999 999999999998655 3799999943221 12110 11111 1257889999999986
Q ss_pred Ccccc--------ccH------HHHhc---CCCCcEEEecCCC
Q psy16115 173 GNKNV--------VTR------EHMDK---MKNGCVVCNMGHS 198 (258)
Q Consensus 173 ~~~~~--------i~~------~~l~~---~k~g~~ivnvg~~ 198 (258)
|.+.- +.. +.++. -.+.++++.++.+
T Consensus 85 G~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNP 127 (321)
T PTZ00325 85 GVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNP 127 (321)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 54321 111 22223 3567788887766
No 497
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=95.75 E-value=0.081 Score=48.32 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=66.2
Q ss_pred ccCCCEEEEEcCc--hHHHHHHHHHHhCCCEEEEEeCChh-----hHHH----HHhCCCc---ccCHHHHHHhCCeeeec
Q psy16115 106 MFGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEIDPI-----CALQ----ACMDGFS---VVKLNEVIRTVDIVVTA 171 (258)
Q Consensus 106 ~l~g~~V~IiG~G--~IG~~~a~~l~~~G~~Vi~~d~~~~-----~~~~----a~~~g~~---~~~l~e~~~~aDvvi~~ 171 (258)
.+.|++|+++|-+ ++.++.+..+..+|++|.++.+... -... +.+.|.. ..++++.++++|+|+.-
T Consensus 152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~ 231 (332)
T PRK04284 152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD 231 (332)
T ss_pred CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence 4789999999975 6999999999999999888754321 1111 2234533 35789999999999984
Q ss_pred c----C-------------ccccccHHHHhcCC-CCcEEEecCCC
Q psy16115 172 T----G-------------NKNVVTREHMDKMK-NGCVVCNMGHS 198 (258)
Q Consensus 172 ~----~-------------~~~~i~~~~l~~~k-~g~~ivnvg~~ 198 (258)
. + ....++++.++.++ ++++|..++..
T Consensus 232 ~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHplP~ 276 (332)
T PRK04284 232 VWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCLPS 276 (332)
T ss_pred CcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCCCC
Confidence 1 1 23456767778776 58888887753
No 498
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.75 E-value=0.029 Score=47.85 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=35.8
Q ss_pred cCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHH
Q psy16115 107 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL 146 (258)
Q Consensus 107 l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~ 146 (258)
++|++++|.|. |.||+.+++.+...|++|+++++++.+..
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~ 43 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLE 43 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 57899999998 88999999999999999999999876543
No 499
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.74 E-value=0.059 Score=50.47 Aligned_cols=87 Identities=18% Similarity=0.163 Sum_probs=60.4
Q ss_pred ccCCCEEEEEcC----------chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcc
Q psy16115 106 MFGGKQVVLCGY----------GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 175 (258)
Q Consensus 106 ~l~g~~V~IiG~----------G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~ 175 (258)
.+.|++|+|+|+ ..-...+++.|...|++|.+||+.-..... ...+ ...++++.++++|+++.++...
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~-~~~~-~~~~~~~~~~~ad~~v~~t~~~ 387 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEV-KGLP-LIDDLEEALKGADALVILTDHD 387 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhh-hhcc-cCCCHHHHHhCCCEEEEecCCH
Confidence 368999999996 346788999999999999999986433221 1111 2357888999999999998666
Q ss_pred cc--ccHHHHhcCCCCcEEEe
Q psy16115 176 NV--VTREHMDKMKNGCVVCN 194 (258)
Q Consensus 176 ~~--i~~~~l~~~k~g~~ivn 194 (258)
.. ++-+.++.+.+...++|
T Consensus 388 ~~~~~~~~~~~~~~~~~~v~D 408 (411)
T TIGR03026 388 EFKDLDLEKIKDLMKGKVVVD 408 (411)
T ss_pred HHhccCHHHHHHhcCCCEEEe
Confidence 53 34444543323447776
No 500
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.73 E-value=0.038 Score=57.40 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=47.1
Q ss_pred CCCEEEEEcCchHHHHHHHHHHhC-CCE-------------EEEEeCChhhHHHHHh-C-CC-----cccCHHHHH---H
Q psy16115 108 GGKQVVLCGYGEVGKGCCQSLKGL-GCV-------------IYITEIDPICALQACM-D-GF-----SVVKLNEVI---R 163 (258)
Q Consensus 108 ~g~~V~IiG~G~IG~~~a~~l~~~-G~~-------------Vi~~d~~~~~~~~a~~-~-g~-----~~~~l~e~~---~ 163 (258)
..++|+|+|+|.||+..++.|... +.+ |.+.|+++.+.+...+ . ++ ++.+.+++. +
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 578999999999999999999764 333 8889999877654332 2 32 133445544 5
Q ss_pred hCCeeeecc
Q psy16115 164 TVDIVVTAT 172 (258)
Q Consensus 164 ~aDvvi~~~ 172 (258)
++|+|+.|+
T Consensus 648 ~~DaVIsal 656 (1042)
T PLN02819 648 QVDVVISLL 656 (1042)
T ss_pred CCCEEEECC
Confidence 799999974
Done!