RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16115
(258 letters)
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 251 bits (643), Expect = 6e-82
Identities = 115/178 (64%), Positives = 135/178 (75%), Gaps = 28/178 (15%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
LKR+TD+MFGGKQVV+CGYGEVGKGCC +LK +G ++Y+TEIDPICALQACMDGF +VK
Sbjct: 209 GLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVK 268
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
LNEVIR VDIV+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+V
Sbjct: 269 LNEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERV 328
Query: 218 RSQVDHVIWPD------------VNLKNNTV----------------IDLFRKPKSRL 247
RSQVDHVIWPD +NL +TV I+L+ P+ R
Sbjct: 329 RSQVDHVIWPDGKRIVLLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRY 386
Score = 108 bits (271), Expect = 2e-27
Identities = 58/64 (90%), Positives = 61/64 (95%)
Query: 31 QALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG 90
QALALIEL+NAP GRYK DVYLLPKKMDEYVASLHLPTFDAHLTEL+DEQAKY+GLNK G
Sbjct: 371 QALALIELYNAPEGRYKQDVYLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNG 430
Query: 91 PFKP 94
PFKP
Sbjct: 431 PFKP 434
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 244 bits (626), Expect = 2e-79
Identities = 60/150 (40%), Positives = 89/150 (59%), Gaps = 12/150 (8%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
+KR+TDVM GK +CGYG+VGKGC +L+G G + +TE+DPI ALQA M+G+ V+
Sbjct: 200 GIKRATDVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLL 259
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
+ +V+ I VT TGN +++T EH +M++ +VCN+GH +TEI V L+ +V
Sbjct: 260 VEDVVEEAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEV 319
Query: 218 RSQVDHVIWPD------------VNLKNNT 235
+ QVD + VNL +
Sbjct: 320 KPQVDRYTMANGRHIILLAEGRLVNLGCAS 349
Score = 102 bits (256), Expect = 3e-25
Identities = 36/72 (50%), Positives = 47/72 (65%), Gaps = 5/72 (6%)
Query: 31 QALALIELF-NAPAGRY----KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMG 85
Q LA IEL+ N G+Y K+ VY LPKK+DE VA+LHL A LT+L+ +QA+Y+
Sbjct: 363 QVLAQIELWTNRDTGKYPRGAKAQVYFLPKKLDEKVAALHLGKLGAKLTKLTPKQAEYIN 422
Query: 86 LNKAGPFKPSYY 97
GPFKP +Y
Sbjct: 423 CPVDGPFKPDHY 434
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 232 bits (594), Expect = 2e-74
Identities = 77/150 (51%), Positives = 99/150 (66%), Gaps = 14/150 (9%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
++R TDVM GK V+CGYG+VGKG QSL G G + +TE+DPICALQA MDGF VV
Sbjct: 236 GIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVT 295
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
L++ T DIVVT TGNK+V+T +HM KMK+ C+V N+GH + EI V +LR +L W V
Sbjct: 296 LDDAASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALR--NLKWTNV 353
Query: 218 RSQVDHVIWPD------------VNLKNNT 235
+ QVD + +PD +NL N T
Sbjct: 354 KPQVDLIEFPDGKRLILLSEGRLLNLGNAT 383
Score = 122 bits (308), Expect = 2e-32
Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 31 QALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG 90
Q L IELF YK++VY+LPK +DE VA LHL A LT LS+EQA Y+G+ G
Sbjct: 397 QVLGQIELFTRT-DAYKNEVYVLPKHLDEKVARLHLDKLGAKLTVLSEEQAAYIGVTPQG 455
Query: 91 PFKPSYY 97
PFK +Y
Sbjct: 456 PFKSEHY 462
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 221 bits (564), Expect = 2e-69
Identities = 67/151 (44%), Positives = 93/151 (61%), Gaps = 13/151 (8%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
+ R TD + GGK+V++CGYG+VGKGC +++KG G + +TEIDPI ALQA M+GF VV
Sbjct: 263 GINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVT 322
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
+ E I DIVVTATGNK+++ EH+ MK+ ++ N+GH + EID+ L T V
Sbjct: 323 VEEAIGDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNV 382
Query: 218 RSQVDHVIWPD-------------VNLKNNT 235
+ QVD + D +NL N T
Sbjct: 383 KPQVDLWTFGDTGRSIIVLSEGRLLNLGNAT 413
Score = 121 bits (306), Expect = 4e-32
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 31 QALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG 90
Q +A IEL+ Y ++VY LPK +DE VA +H+ HLT+L+ EQA+Y+G++ G
Sbjct: 427 QTIAQIELWTKN-DEYDNEVYRLPKHLDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEG 485
Query: 91 PFKPSYY 97
P+KP +Y
Sbjct: 486 PYKPDHY 492
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 218 bits (558), Expect = 1e-68
Identities = 74/150 (49%), Positives = 98/150 (65%), Gaps = 14/150 (9%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
+KR+TDVM GK V+ GYG+VGKGC QSL+GLG +++TEIDPICALQA M+G+ VV
Sbjct: 266 GIKRATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVT 325
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
+ DI VTATGN +V+ +HM M++ +VCN+GH ++EIDV S R WE +
Sbjct: 326 MEYAADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTR--QYQWENI 383
Query: 218 RSQVDHVIWPD------------VNLKNNT 235
+ QVDH+I+PD VNL T
Sbjct: 384 KPQVDHIIFPDGKRVILLAEGRLVNLGCAT 413
Score = 124 bits (314), Expect = 3e-33
Identities = 39/67 (58%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 31 QALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG 90
Q LA IELF G Y + VY+LPK +DE VA LHL A L+ELSD+QA Y+G++KAG
Sbjct: 427 QTLAQIELFTRG-GEYANKVYVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAG 485
Query: 91 PFKPSYY 97
PFKP +Y
Sbjct: 486 PFKPDHY 492
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium
falciparum} SCOP: c.2.1.4 c.23.12.3
Length = 479
Score = 217 bits (555), Expect = 2e-68
Identities = 75/181 (41%), Positives = 102/181 (56%), Gaps = 30/181 (16%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
L R+TD + GK VV+CGYG+VGKGC S+KGLG +YITEIDPICA+QA M+GF+VV
Sbjct: 246 GLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVT 305
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR-TPDLTWEK 216
L+E++ D +T TGN +V+ EH+ KMKN VV N+GH + EI VN L + E
Sbjct: 306 LDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIEN 365
Query: 217 VRSQVDHVIWPD------------VNLKNNT-----------------VIDLFRKPKSRL 247
V+ QVD + P+ +NL T +DL++ +
Sbjct: 366 VKPQVDRITLPNGNKIIVLARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNK 425
Query: 248 Y 248
Y
Sbjct: 426 Y 426
Score = 125 bits (315), Expect = 2e-33
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 31 QALALIELF-NAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKA 89
Q A ++L+ N +Y++ VYLLPK +DE VA HL +A LTEL D Q +++G+NK+
Sbjct: 410 QTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKS 469
Query: 90 GPFKPSYY 97
GPFK + Y
Sbjct: 470 GPFKSNEY 477
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex,
NAD cofactor, regul SAM-dependent methylation reactions;
HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A*
3onf_A*
Length = 488
Score = 209 bits (535), Expect = 2e-65
Identities = 70/182 (38%), Positives = 99/182 (54%), Gaps = 31/182 (17%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
L R+TDVM GK V+ GYG+VGKGC +LK G + +TEIDPICALQA M+G V+
Sbjct: 254 GLMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLT 313
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT-PDLTWEK 216
L +V+ DI VT TGNK+++ +HM KMKN +VCN+GH + EID+ L T P +
Sbjct: 314 LEDVVSEADIFVTTTGNKDIIMLDHMKKMKNNAIVCNIGHFDNEIDMLGLETHPGVKRIT 373
Query: 217 VRSQVDHVIWPD-------------VNLKNNT-----------------VIDLFRKPKSR 246
++ Q D ++P+ +NL T ++L+ + S
Sbjct: 374 IKPQTDRWVFPETNTGIIILAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSG 433
Query: 247 LY 248
Y
Sbjct: 434 KY 435
Score = 126 bits (319), Expect = 7e-34
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 31 QALALIELFN-APAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKA 89
Q +A +EL+N +G+Y+ VY+LPK +DE VA+LHL A LT+LS +QA Y+ +
Sbjct: 419 QVIAQLELWNEKSSGKYEKKVYVLPKHLDEKVAALHLEKLGAKLTKLSKDQADYISVPVE 478
Query: 90 GPFKPSYY 97
GP+KP +Y
Sbjct: 479 GPYKPFHY 486
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 80.8 bits (199), Expect = 3e-18
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 4/99 (4%)
Query: 101 RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV---K 157
+ TD G V + G G VG + LG + + + + G K
Sbjct: 147 QHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISK 206
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMG 196
+ +R VD+ + T VVT + +M + V ++
Sbjct: 207 AAQELRDVDVCIN-TIPALVVTANVLAEMPSHTFVIDLA 244
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 51.7 bits (124), Expect = 5e-08
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 103 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLN--- 159
TD G QV + G G G ++ LG + + + G +
Sbjct: 151 TDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELK 210
Query: 160 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVV 192
E ++ +DI + + ++ + + M ++
Sbjct: 211 EHVKDIDICINTIPSM-ILNQTVLSSMTPKTLI 242
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 44.2 bits (105), Expect = 2e-05
Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 19/99 (19%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYI----TEIDPICALQACMDGFSVVKLNEVIR 163
G+Q+++ G G++G+ LG VI + D + + + +
Sbjct: 137 GQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADH------FHETVAFTATADALA 190
Query: 164 TVDIVVTA------TGNKNVVTREHMDKMKNGCVVCNMG 196
T + +V A T ++ + E + K ++ N+G
Sbjct: 191 TANFIVNALPLTPTT--HHLFSTELFQQTKQQPMLINIG 227
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 42.1 bits (100), Expect = 3e-05
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYIT--EIDPICALQACMDGFSVV--KLNEVIRT 164
G +++L G G + + + ID + A + V+ ++ +I+
Sbjct: 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKN 80
Query: 165 VDIVVTATGNKN-VVTREHMDKMK 187
D+++TAT +K +V + K
Sbjct: 81 NDVIITATSSKTPIVEERSLMPGK 104
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 43.0 bits (102), Expect = 4e-05
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 14/106 (13%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV 156
L + + + G G VG L+ LG + DP A D
Sbjct: 108 MLAERDGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLL---CDPP--RAARGDEGDFR 162
Query: 157 KLNEVIRTVDIV-----VTATGN---KNVVTREHMDKMKNGCVVCN 194
L+E+++ D++ + G ++ + ++K G ++ N
Sbjct: 163 TLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILIN 208
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 42.4 bits (100), Expect = 8e-05
Identities = 22/189 (11%), Positives = 58/189 (30%), Gaps = 30/189 (15%)
Query: 37 ELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDA-HLTELSDEQAKYMGLNKAGPFKPS 95
E + + +PK +++ + L P D + + +
Sbjct: 126 EWWYDDP----KYLVKIPKSIED-IGILAQPLADIEK------------SIEEILEVQKR 168
Query: 96 YYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS 154
+ ++V++ G G +G + G V +P Q ++
Sbjct: 169 VPVWTCDDGTL-NCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETK 227
Query: 155 VV---------KLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMG-HSNTEIDV 204
KL + + D+++ ATG + + + V+ G ++ + +
Sbjct: 228 TNYYNSSNGYDKLKDSVGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPL 287
Query: 205 NSLRTPDLT 213
+ ++
Sbjct: 288 DYKTLQEIV 296
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 40.0 bits (93), Expect = 4e-04
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVD 166
G K V + G G++G + + + EI P + G + + I D
Sbjct: 10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEAD 69
Query: 167 IVVTATGNKNV--VTREHMDKMKNGCVVCNMG 196
+VV A + + V + + +++ G +V +
Sbjct: 70 VVVLALPDNIIEKVAEDIVPRVRPGTIVLILD 101
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold,
helix-turn-helix, Ca2+ binding, flexible interface;
1.70A {Methanothermobacterthermautotrophicus} PDB:
2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Length = 234
Score = 39.7 bits (93), Expect = 5e-04
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLN----EV---- 161
+ VV+CG+ E C + L+G + D + G + V +
Sbjct: 10 RHVVICGWSESTLECLRELRGSEVF--VLAEDENVRKKVLRSGANFVHGDPTRVSDLEKA 67
Query: 162 -IRTVDIVVTATGN 174
+R V+ +
Sbjct: 68 NVRGARAVIVDLES 81
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 39.2 bits (92), Expect = 8e-04
Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 19/99 (19%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYIT----EIDPICALQACMDGFSVVKLNEVIR 163
G+ +++ G G +G+ + K G V+ ++ E + LN+++
Sbjct: 140 GRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF----DQVYQLP--ALNKMLA 193
Query: 164 TVDIVV------TATGNKNVVTREHMDKMKNGCVVCNMG 196
D++V T ++ T + K G ++ N+G
Sbjct: 194 QADVIVSVLPATRET--HHLFTASRFEHCKPGAILFNVG 230
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 39.2 bits (92), Expect = 8e-04
Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 16/107 (14%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFSV 155
++ + + G G+VG + L+GLG ++ DP QA
Sbjct: 105 AMAEVRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVC----DPP--RQAREPDGEF 158
Query: 156 VKLNEVIRTVDIV-----VTATGN---KNVVTREHMDKMKNGCVVCN 194
V L ++ D++ + G ++++ + ++ G + N
Sbjct: 159 VSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVN 205
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 37.6 bits (88), Expect = 8e-04
Identities = 13/131 (9%), Positives = 35/131 (26%), Gaps = 27/131 (20%)
Query: 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK--------LNEV 161
+ ++ G G G + L G + + +GF V +
Sbjct: 7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSL 66
Query: 162 -IRTVDIVVTATGN--KNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV- 217
+ V V+ + N+ + + + + + R ++
Sbjct: 67 DLEGVSAVLITGSDDEFNLKILKALRSVSDVYAIV--------------RVSSPKKKEEF 112
Query: 218 -RSQVDHVIWP 227
+ + V+
Sbjct: 113 EEAGANLVVLV 123
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 38.2 bits (89), Expect = 9e-04
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 11/78 (14%)
Query: 108 GGKQVVLCGYGEVGKGCCQSLKG-LGCVIYITEIDPICALQACMDGFSVVKLN------- 159
G QV++ G G +G G L+ G + EI A Q +G +V+ +
Sbjct: 38 GHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFW 97
Query: 160 ---EVIRTVDIVVTATGN 174
V +V+ A +
Sbjct: 98 ERILDTGHVKLVLLAMPH 115
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 37.7 bits (88), Expect = 0.001
Identities = 20/132 (15%), Positives = 41/132 (31%), Gaps = 28/132 (21%)
Query: 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP--------ICALQACMDGFSVVKLNEV 161
KQ + G G G + L +G + +I+ + +L +
Sbjct: 7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSL 66
Query: 162 -IRTVDIVVTATGNK---NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
IR + V+ A G + +T + ++ + + + KV
Sbjct: 67 GIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWV--------------KAQNYYHHKV 112
Query: 218 RSQ--VDHVIWP 227
+ D +I P
Sbjct: 113 LEKIGADRIIHP 124
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 38.7 bits (91), Expect = 0.001
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VI-YITEIDPICALQACMDGFSVVKLNEVIRTVD 166
+ V + G G +G+ Q ++G G VI Y D + G+ V L+++ + D
Sbjct: 146 DQVVGVVGTGHIGQVFMQIMEGFGAKVITY----DIFRNPELEKKGYYVDSLDDLYKQAD 201
Query: 167 IV---VTAT-GNKNVVTREHMDKMKNGCVVCNMG 196
++ V N +++ E + KMK V+ N+
Sbjct: 202 VISLHVPDVPANVHMINDESIAKMKQDVVIVNVS 235
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 38.8 bits (91), Expect = 0.001
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTVDI 167
+ + G G +G G V+ D + G L+E+++ D+
Sbjct: 141 RLTLGVIGTGRIGSRVAMYGLAFGMKVLCY---DVVKREDLKEKGCVYTSLDELLKESDV 197
Query: 168 V---VTAT-GNKNVVTREHMDKMKNGCVVCNMG 196
+ V T +++ E + MK+G + N
Sbjct: 198 ISLHVPYTKETHHMINEERISLMKDGVYLINTA 230
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 38.0 bits (89), Expect = 0.002
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VI-YITEIDPICALQACMDGFSVVKLNEVIRTVD 166
V + G G +G+ Q G+G VI D + D + V L+EV+ D
Sbjct: 146 NCTVGVVGLGRIGRVAAQIFHGMGATVIGE----DVFEI-KGIEDYCTQVSLDEVLEKSD 200
Query: 167 IV---VTAT-GNKNVVTREHMDKMKNGCVVCNMG 196
I+ N VVTR+ + KMK+G ++ N
Sbjct: 201 IITIHAPYIKENGAVVTRDFLKKMKDGAILVNCA 234
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 38.0 bits (89), Expect = 0.002
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VI-YITEIDPICALQACMDGFSVVKLNEVIRTVD 166
+ V + G G +G+ + KG G VI Y DP + F V L ++ + D
Sbjct: 145 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAY----DPYPM-KGDHPDFDYVSLEDLFKQSD 199
Query: 167 IV---VTAT-GNKNVVTREHMDKMKNGCVVCNMG 196
++ V N +++ + MK G +V N
Sbjct: 200 VIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTA 233
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 37.6 bits (88), Expect = 0.002
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYIT--EIDPICALQACMDGFSVV--KLNEV 161
K V++ G GE+GK +SL G + + + L + G +V +L +
Sbjct: 165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDH 224
Query: 162 IRTVDIVVTATGNKN-VVTREHM 183
+ D+VV+AT + V+ + +
Sbjct: 225 LARSDVVVSATAAPHPVIHVDDV 247
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 37.6 bits (88), Expect = 0.003
Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 19/124 (15%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC---ALQACMDGFSVV-----KLNE 160
G V++ G G +G + K G + T P A D VV + +
Sbjct: 169 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESS 228
Query: 161 VIRT--------VDIVVTATGNKNVVTREHMDKMKNGCVVCN--MGHSNTEIDVNSLRTP 210
+I ++ + +GN+ + ++ + G + MG + + +
Sbjct: 229 IIERIRSAIGDLPNVTIDCSGNEKCI-TIGINITRTGGTLMLVGMGSQMVTVPLVNACAR 287
Query: 211 DLTW 214
++
Sbjct: 288 EIDI 291
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 37.2 bits (87), Expect = 0.003
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP-ICALQACMDGFSVVKLNEVIRTVD 166
GK + + G+G +G +G V+ D +A V L E+++ D
Sbjct: 142 GKTIGIVGFGRIGTKVGIIANAMGMKVLAY---DILDIREKAEKINAKAVSLEELLKNSD 198
Query: 167 IV---VTATGN-KNVVTREHMDKMKNGCVVCN 194
++ VT + + K ++ + MK+ ++ N
Sbjct: 199 VISLHVTVSKDAKPIIDYPQFELMKDNVIIVN 230
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 37.2 bits (87), Expect = 0.003
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDP-ICALQACMDGFSVVKLNEVIRTV 165
GK + + G G +G+ ++ G + Y DP I + G + L E+
Sbjct: 165 GKTLGILGLGRIGREVATRMQSFGMKTIGY----DPIISPEVSASFGVQQLPLEEIWPLC 220
Query: 166 DIV---VTATGN-KNVVTREHMDKMKNGCVVCN 194
D + + ++ + K G V N
Sbjct: 221 DFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVN 253
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 36.9 bits (86), Expect = 0.005
Identities = 15/99 (15%), Positives = 34/99 (34%), Gaps = 19/99 (19%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYIT----EIDPICALQACMDGFSVVKLNEVIR 163
V + G G +G +SL+ G + + + G +L +
Sbjct: 139 EFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGV----ESYVGRE--ELRAFLN 192
Query: 164 TVDIVV------TATGNKNVVTREHMDKMKNGCVVCNMG 196
+++ T ++ E +D++ +G V N+
Sbjct: 193 QTRVLINLLPNTAQT--VGIINSELLDQLPDGAYVLNLA 229
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 35.2 bits (82), Expect = 0.017
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRT-VDI 167
G V++ G G VG G + + + D A G + V L +V+ T D+
Sbjct: 175 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDV 234
Query: 168 VV-TATGNKNVVTREHMDKMK 187
A G V+T E +
Sbjct: 235 FAPCAMG--GVITTEVARTLD 253
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 35.3 bits (82), Expect = 0.017
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTVDI 167
GK++ + GYG +G + LG V + D L + V L++++ D+
Sbjct: 145 GKKLGIIGYGHIGTQLGILAESLGMYVYFY---DIENKL-PLGNATQVQHLSDLLNMSDV 200
Query: 168 V---VTAT-GNKNVVTREHMDKMKNGCVVCN 194
V V KN++ + + MK G ++ N
Sbjct: 201 VSLHVPENPSTKNMMGAKEISLMKPGSLLIN 231
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 34.0 bits (79), Expect = 0.033
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP-ICALQACMDGFSVVKLNEVIRTVD 166
GK + + G+G +G + LG ++ DP +A V L +++ D
Sbjct: 142 GKTIGIIGFGRIGYQVAKIANALGMNILLY---DPYPNEERAKEVNGKFVDLETLLKESD 198
Query: 167 IV---VTATGN-KNVVTREHMDKMKNGCVVCN 194
+V V + +++ E + MK ++ N
Sbjct: 199 VVTIHVPLVESTYHLINEERLKLMKKTAILIN 230
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 34.2 bits (79), Expect = 0.035
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP-ICALQACMDGFSVVKLNEVIRTVD 166
GK V + G G +G+ Q + G V+ DP + +A G ++ L++++ D
Sbjct: 142 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAY---DPYVSPARAAQLGIELLSLDDLLARAD 198
Query: 167 IVVTATG----NKNVVTREHMDKMKNGCVVCN 194
+ ++ +E + K K G ++ N
Sbjct: 199 FISVHLPKTPETAGLIDKEALAKTKPGVIIVN 230
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 33.0 bits (76), Expect = 0.072
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 14/96 (14%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL----QACMDGFSVVKLNEVI 162
GK + G G +G + L ++Y AL + + V + E++
Sbjct: 164 GKTIATIGAGRIGYRVLERLVPFNPKELLY----YDYQALPKDAEEKVGARRVENIEELV 219
Query: 163 RTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCN 194
DIV G K ++ +E + K K G + N
Sbjct: 220 AQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVN 255
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase,
hydrolase, leishmaniasis; 2.70A {Leishmania major}
Length = 300
Score = 32.9 bits (76), Expect = 0.083
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 12/56 (21%)
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLT 213
+ + +RT DIV+ A G V E +K G V +DV + PD +
Sbjct: 204 MIDYLRTADIVIAAMGQPGYVKGEW---IKEGAAV---------VDVGTTPVPDPS 247
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 32.8 bits (76), Expect = 0.093
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 112 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP--ICALQACMDG-----FS-VVKLNEVIR 163
VV+ G G VG + GLG + I +I+ + L+ +S ++ +
Sbjct: 170 VVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVA 229
Query: 164 TVDIVVTA---TGNK--NVVTREHMDKMKNGCVV 192
D+++ A G + +V +++M+ G V+
Sbjct: 230 EADLLIGAVLVPGRRAPILVPASLVEQMRTGSVI 263
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 32.8 bits (76), Expect = 0.097
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 112 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP--ICALQACMDG-----FS-VVKLNEVIR 163
VV+ G G VG + G+G + I +++ + L G + + + ++
Sbjct: 169 VVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQ 228
Query: 164 TVDIVVTA---TGNK--NVVTREHMDKMKNGCVV 192
D+++ A G K +VTR+ + MK G V+
Sbjct: 229 HADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVI 262
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 32.8 bits (76), Expect = 0.098
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 112 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP--ICALQACMDG-----FS-VVKLNEVIR 163
VV+ G G G + G+G + + +I+ + L A G +S +L ++
Sbjct: 171 VVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVK 230
Query: 164 TVDIVVTA---TGNK--NVVTREHMDKMKNGCVV 192
D+V+ A G K +V+ + MK G V+
Sbjct: 231 RADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVL 264
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 32.6 bits (75), Expect = 0.099
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 10/100 (10%)
Query: 100 KRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKL 158
++S + GK + + GYG +G+ K G VI
Sbjct: 113 RQSPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAY---TRS--SVDQNVDVISESP 167
Query: 159 NEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCN 194
++ R D V+ A + +V + + + N
Sbjct: 168 ADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVN 207
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.10
Identities = 36/200 (18%), Positives = 66/200 (33%), Gaps = 53/200 (26%)
Query: 97 YSLKRSTDV----MFG-GKQV----VLCGYGEVGK----------GCCQS----LKGLGC 133
L+ + +V + G GK V Y K C S L+ L
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 134 VIYITEIDPICALQACMDGFSVVKL--NEVIRTVDIVVTATGNK-------NVVTREHMD 184
++Y +IDP + D S +KL + + + ++ + + NV + +
Sbjct: 205 LLY--QIDP--NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 185 KMKNGC--VVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK 242
C ++ T+ +++ T ++ +DH L + V L K
Sbjct: 261 AFNLSCKILLTTRFKQVTDF-LSAATTTHIS-------LDHHSMT---LTPDEVKSLLLK 309
Query: 243 ----PKSRLYLEILQTCPLV 258
L E+L T P
Sbjct: 310 YLDCRPQDLPREVLTTNPRR 329
Score = 27.9 bits (61), Expect = 3.9
Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 53/164 (32%)
Query: 49 DVYLLPKKMDEYVASLH-------------------LPTFDA--------HLTELSDEQA 81
+YL K E +LH P D HL + E
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI--EHP 487
Query: 82 KYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVI----YI 137
+ M L F+ + + F +++ G + L + YI
Sbjct: 488 ERMTL-----FRMVFLDFR------FLEQKIRHDSTAWNASGSILNT--LQQLKFYKPYI 534
Query: 138 TEIDPICA--LQACMDGFSVVKLNE-VIRT--VDIVVTATGNKN 176
+ DP + A +D F + K+ E +I + D++ A ++
Sbjct: 535 CDNDPKYERLVNAILD-F-LPKIEENLICSKYTDLLRIALMAED 576
Score = 27.9 bits (61), Expect = 4.0
Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 31/119 (26%)
Query: 161 VIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTE--------IDVNSLR---- 208
++ T VT + T +D + + L
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMT-----LTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 209 --TP---DLTWEKVRSQVDHVI-WPDVNLKN-NTVIDLF---RKPK--SRLY--LEILQ 253
P + E +R + W VN T+I+ +P +++ L +
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Score = 27.1 bits (59), Expect = 7.6
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 11/49 (22%)
Query: 211 DLTW--EKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLE-ILQTCP 256
D + +K+R D W NT+ L + Y I P
Sbjct: 499 DFRFLEQKIRH--DSTAWNASGSILNTLQQL------KFYKPYICDNDP 539
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate
cyclohydrolase...; THF, bifunctional, oxidoreductase;
HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2
PDB: 1dia_A* 1dib_A* 1dig_A*
Length = 301
Score = 32.1 bits (74), Expect = 0.13
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLT 213
L+E + DI+V ATG +V E +K G +V ID PD
Sbjct: 202 LDEEVNKGDILVVATGQPEMVKGEW---IKPGAIV---------IDCGINYVPDDK 245
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 32.2 bits (74), Expect = 0.14
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTVDI 167
GK + + GYG +G + LG V Y D L + L+E+++T D+
Sbjct: 156 GKTLGIVGYGNIGSQVGNLAESLGMTVRYY---DTSDKL-QYGNVKPAASLDELLKTSDV 211
Query: 168 V---VTAT-GNKNVVTREHMDKMKNGCVVCN 194
V V ++ ++T + KMK G + N
Sbjct: 212 VSLHVPSSKSTSKLITEAKLRKMKKGAFLIN 242
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 32.0 bits (73), Expect = 0.18
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 11/74 (14%)
Query: 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK--------LNEV 161
+ VV+CG+ E C + L+G + D + G + V L +
Sbjct: 116 RHVVICGWSESTLECLRELRGSEVF--VLAEDENVRKKVLRSGANFVHGDPTRVSDLEKA 173
Query: 162 -IRTVDIVVTATGN 174
+R V+ +
Sbjct: 174 NVRGARAVIVDLES 187
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.22
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 126 QSLKGL-GCV-IYITEIDPICALQACMD 151
Q+LK L + +Y + P A++A M+
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 30.8 bits (70), Expect = 0.22
Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 13/76 (17%)
Query: 112 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP----ICALQACMDGFSVVK----LNEVIR 163
++CG+ + L G + + P Q D V+ + V++
Sbjct: 6 FIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLK 65
Query: 164 TVDI-----VVTATGN 174
I ++ + N
Sbjct: 66 KAGIDRCRAILALSDN 81
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.23
Identities = 35/217 (16%), Positives = 65/217 (29%), Gaps = 56/217 (25%)
Query: 50 VYLLPKKMDEYVASLH-LPTFDAHLTELSDEQ-AKYMG-LNKAGPF-KPSYYSLKRSTDV 105
L P +++ + + +P+ ++ L+ EQ Y+ N P K SL
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK- 375
Query: 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD----GFSVVKLNEV 161
+V+ G QSL GL + A + +D FS KL
Sbjct: 376 -----NLVVSGPP-------QSLYGL-----NLTLRKAKA-PSGLDQSRIPFSERKL--K 415
Query: 162 IRTVDIVVTATGNKNVVTREHMDKMK--NGCVVCNMGHSNTEIDVNSLRTP--D-LTWEK 216
+ V + H + + + ++ +N + ++ P D
Sbjct: 416 FSNRFLPVAS--------PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 217 VRSQ-------------VDHVIWPDVNLKNNT-VIDL 239
+R V W T ++D
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 31.0 bits (71), Expect = 0.32
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP--ICALQACMDGFSVVKLNEVIRTVD 166
K +++ G G + +L G +++ L V EVI V
Sbjct: 129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQ 188
Query: 167 IVVTATG---NKNVVTREHMDKMKNGCVVC 193
++V T + D +K VV
Sbjct: 189 VIVNTTSVGLKDEDPEIFNYDLIKKDHVVV 218
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 31.0 bits (71), Expect = 0.36
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 96 YYSLKRSTDVMFG-----GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM 150
Y +K + FG G V + G G V K C+ L G + +T+++ A+ A +
Sbjct: 155 YRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNK-AAVSAAV 213
Query: 151 D--GFSVVKLNEVIRT-VDIVV-TATGNKNVVTREHMDKMK 187
G V N + DI A G V+ + ++K
Sbjct: 214 AEEGADAVAPNAIYGVTCDIFAPCALG--AVLNDFTIPQLK 252
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer,
rossmann-fold NAD domain, human MU crystallin homolog;
HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13
PDB: 1vll_A
Length = 322
Score = 30.7 bits (70), Expect = 0.38
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 155 VVKLNEVIRTVDIVVTATGNKN-VVTREHMDKMKNGCVVCNMG---HSNTEIDVNSLR 208
V+ E D++VT T ++ VV E ++ G + +G E+DV L+
Sbjct: 178 SVQPAEEASRCDVLVTTTPSRKPVVKAEW---VEEGTHINAIGADGPGKQELDVEILK 232
>3p2o_A Bifunctional protein fold; structural genomics, center for
structural genomics of infec diseases, csgid,
alpha-beta-alpha sandwich; HET: NAD; 2.23A
{Campylobacter jejuni subsp}
Length = 285
Score = 30.5 bits (70), Expect = 0.45
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 12/54 (22%)
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD 211
L+ R D+++ A G N++ + +K G +V +DV R
Sbjct: 197 LSLYTRQADLIIVAAGCVNLLRSDM---VKEGVIV---------VDVGINRLES 238
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 30.6 bits (70), Expect = 0.49
Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 7/102 (6%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP--ICALQACMDGFS 154
LK+ +++ G G KG L + + + ++ +
Sbjct: 107 GLKQ-IYEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKIN 165
Query: 155 VVKLNEVIRTVDIVVTATG---NKNVVTREHMDKMKNGCVVC 193
+ + DI++ T N N + ++++ + +V
Sbjct: 166 LSHAESHLDEFDIIINTTPAGMNGNTDSVISLNRLASHTLVS 207
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase,
cyclcohydrolase, channeling, oxidoreductase,hydrolase;
2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Length = 288
Score = 30.5 bits (70), Expect = 0.50
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 12/54 (22%)
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD 211
L + D+++ A G + + +K G +V IDV R +
Sbjct: 196 LRHHVENADLLIVAVGKPGFIPGDW---IKEGAIV---------IDVGINRLEN 237
>2i99_A MU-crystallin homolog; thyroid hormine binding protein,
oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Length = 312
Score = 30.3 bits (69), Expect = 0.51
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 158 LNEVIRTVDIVVTATGNKN-VVTREHMDKMKNGCVVCNMG---HSNTEIDVNSLRTPDL- 212
+ E + D+++T T ++ E +K G + +G E+D ++ L
Sbjct: 190 VQEAVAGADVIITVTLATEPILFGEW---VKPGAHINAVGASRPDWRELDDELMKEAVLY 246
Query: 213 --TWEKVRSQVDHVIWPDVNL 231
+ E + V+ +
Sbjct: 247 VDSQEAALKESGDVLLSGAEI 267
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate
dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 3ngl_A
Length = 276
Score = 30.1 bits (69), Expect = 0.53
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 12/47 (25%)
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV 204
+ + R+ IVV A G + RE + G VV IDV
Sbjct: 187 IGSMTRSSKIVVVAVGRPGFLNREM---VTPGSVV---------IDV 221
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 30.4 bits (69), Expect = 0.55
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 11/62 (17%)
Query: 150 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 209
+ +S L + D+V+T ++N +K G V I+ +
Sbjct: 231 LGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEY--IKEGAVC---------INFACTKN 279
Query: 210 PD 211
Sbjct: 280 FS 281
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate
cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis}
PDB: 2c2y_A
Length = 281
Score = 30.1 bits (69), Expect = 0.59
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 12/54 (22%)
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD 211
L + R DIVV A G +++T + ++ G V IDV RT D
Sbjct: 197 LPALTRQADIVVAAVGVAHLLTADM---VRPGAAV---------IDVGVSRTDD 238
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A
{Pseudomonas aeruginosa PAO1}
Length = 286
Score = 30.1 bits (69), Expect = 0.61
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 12/54 (22%)
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD 211
L + + D+VV A G +V E +K G +V IDV R D
Sbjct: 198 LADHVSRADLVVVAAGKPGLVKGEW---IKEGAIV---------IDVGINRQAD 239
>3l07_A Bifunctional protein fold; structural genomics, IDP01849,
methylenetetrahydrofolate dehydrogenase; 1.88A
{Francisella tularensis}
Length = 285
Score = 30.2 bits (69), Expect = 0.61
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 12/47 (25%)
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV 204
L DI++ A G N +T + +K G VV IDV
Sbjct: 198 LKSHTTKADILIVAVGKPNFITADM---VKEGAVV---------IDV 232
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural
genomics, PSI-2, Pro structure initiative; HET: MSE AMP;
1.79A {Escherichia coli k-12}
Length = 140
Score = 29.0 bits (66), Expect = 0.66
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP 142
+L GYG VG + L + + E
Sbjct: 9 HALLVGYGRVGSLLGEKLLASDIPLVVIETSR 40
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 29.5 bits (67), Expect = 1.0
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 15/107 (14%)
Query: 100 KRSTDVMFG----GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPIC---ALQACMD 151
+ GK + G G +GK Q LK GC ++Y D + L+
Sbjct: 151 NVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYH---DRLQMAPELEKETG 207
Query: 152 GFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCN 194
V LNE++ D++V + + +E + K+K G ++ N
Sbjct: 208 AKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVN 254
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 29.4 bits (66), Expect = 1.1
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 10/99 (10%)
Query: 116 GYGEVGKGCCQSLKGLGC---VIYITEIDPICALQACMDGFSVVK-LNEVIRTVDIVVTA 171
G+GE L+ G Y +A G S + EV D++ +
Sbjct: 31 GFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSL 90
Query: 172 TGNKNVVT--REHMDKMKNGCVVCNMGHSNTEIDVNSLR 208
+ + ++ + G + + + R
Sbjct: 91 VTAQAALEVAQQAGPHLCEGALYADF---TS-CSPAVKR 125
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds
L-proline, 2 bundle, beta barrel, rossmann fold, lyase;
HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP:
c.2.1.13 PDB: 1u7h_A*
Length = 350
Score = 29.2 bits (66), Expect = 1.1
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 158 LNEVIRTVDIVVTATGNKN---VVTREHMDKMKNGCVVCNMG---HSNTEIDVNSLR 208
+ E ++ VDI+ T T +K ++T + ++ G + +G TE+ + LR
Sbjct: 188 VAEAVKGVDIITTVTADKAYATIITPDM---LEPGMHLNAVGGDCPGKTELHADVLR 241
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 29.1 bits (65), Expect = 1.2
Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 15/112 (13%)
Query: 99 LKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-------- 149
+ ++ GK+ V+ G VG L G G + + A A
Sbjct: 109 VVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFK 168
Query: 150 -----MDGFSVVKLNEVIRTVDIVVTATG-NKNVVTREHMDKMKNGCVVCNM 195
+ E ++ V TA ++ + + +V +
Sbjct: 169 VNVTAAETADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADY 220
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A
{Thermotoga maritima}
Length = 253
Score = 29.0 bits (66), Expect = 1.3
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGCV-IYIT-------EIDPICALQACMDGFSVVKLNE 160
+ VV+ G G + +L +G I++ + AL + FS+ +L+E
Sbjct: 108 KEPVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAK-----ALDFPVKIFSLDQLDE 162
Query: 161 VIRTVDIVVTAT 172
V++ + T
Sbjct: 163 VVKKAKSLFNTT 174
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A
{Escherichia coli} PDB: 3axf_A 1amf_A 1wod_A
Length = 237
Score = 28.8 bits (65), Expect = 1.3
Identities = 12/40 (30%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 31 QALALIELFNAPAGR-YKSDVYLLPKKMDEYV--ASLHLP 67
ALAL+E AP G Y SD H
Sbjct: 158 GALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKK 197
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex,
mutant K127S, metal binding protein; 1.55A {Xanthomonas
axonopodis PV} PDB: 2h5y_A
Length = 253
Score = 28.8 bits (65), Expect = 1.6
Identities = 11/40 (27%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 31 QALALIELFNAPAGR-YKSDVYLLPKKMDEYV--ASLHLP 67
AL L+ AP G Y SD K H
Sbjct: 174 AALMLVSRGEAPLGIVYGSDARADAKVRVVATFPDDSHDA 213
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 28.7 bits (65), Expect = 1.7
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-------AC 149
+L+ ++ GK++++ G G +G SL I + A +
Sbjct: 130 ALEEEMNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERR 189
Query: 150 MDGFSVVKLNEVIRTVDIVVTAT 172
FS+ + + DI++ T
Sbjct: 190 SAYFSLAEAETRLAEYDIIINTT 212
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 28.8 bits (65), Expect = 2.0
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPIC--ALQACMDGFSVVKLNEVIRTV 165
G+ + + G G VG+ K G V++ DP ++ + V L +++
Sbjct: 168 GETLGIIGLGRVGQAVALRAKAFGFNVLFY---DPYLSDGVERALGLQRVSTLQDLLFHS 224
Query: 166 DIVVTATG----NKNVVTREHMDKMKNGCVVCN 194
D V G N +++ + +M+ G + N
Sbjct: 225 DCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 257
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein
structure initiative; HET: NAP; 2.35A
{Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Length = 287
Score = 28.7 bits (65), Expect = 2.0
Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 19/102 (18%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYIT------------EIDPICALQACMDGFSVV 156
K +V+ G G + L I I EI + +
Sbjct: 128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFG-EEVKFS 185
Query: 157 KLNEVIRTVDIVVTAT-----GNKNVVTREHMDKMKNGCVVC 193
L+ + VDI++ AT N +V +K++ VV
Sbjct: 186 GLDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVM 227
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis
TOH structural genomics, PSI-2, protein structure
initiative; 1.70A {Bordetella pertussis}
Length = 313
Score = 28.4 bits (64), Expect = 2.3
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 153 FSVVKLNEVIRTVDIVVTATG-NKNVVTREHMDKMKNGCVVCNMG---HSNTEIDVNSLR 208
+ ++ DIVVTAT + + ++ G V +G E+D +LR
Sbjct: 172 ARMAAPADIAAQADIVVTATRSTTPLFAGQA---LRAGAFVGAIGSSLPHTRELDDEALR 228
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 28.5 bits (63), Expect = 2.4
Identities = 20/152 (13%), Positives = 35/152 (23%), Gaps = 17/152 (11%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQA-CMDGFSVVKLNEVI---- 162
++V+ G G C VI +D G ++ +
Sbjct: 52 ATRLVILGTKGFGAHLMNVRHERPCEVIAA--VDDFRYHSGELYYGLPIISTDRFTELAT 109
Query: 163 RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVD 222
D+V T + R +C ++R L D
Sbjct: 110 HDRDLVALNTCRYDGPKRFFDQ-------ICRTHGIPHLNFEQAVRAFGLQGNVDYRVDD 162
Query: 223 HVIWPDVNLKN-NTVIDLFRKPKSR-LYLEIL 252
N+ T+ S +L
Sbjct: 163 WGADIVRNIPAFQTLAQRLADDYSVQTLYAVL 194
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB:
3l4b_A*
Length = 155
Score = 27.6 bits (62), Expect = 2.6
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 14/89 (15%)
Query: 99 LKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP--ICALQACMDGFSVV 156
+ + +V+ G G +G G + + + + L + GF+VV
Sbjct: 13 MSKKQKSK----YIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVV 68
Query: 157 -------KLNEV-IRTVDIVVTATGNKNV 177
L E + D+V T + +
Sbjct: 69 GDAAEFETLKECGMEKADMVFAFTNDDST 97
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1;
transhydrogenase domain I, oxidoreductase; 1.81A
{Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB:
1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A*
2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Length = 384
Score = 28.4 bits (64), Expect = 2.6
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 158 LNEVIRTVDIVVTAT----GNK--NVVTREHMDKMKNGCVVCNM 195
+ + + DI +T T G ++T E + KMK G V+ ++
Sbjct: 251 VLKELVKTDIAIT-TALIPGKPAPVLITEEMVTKMKPGSVIIDL 293
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle
structural genomics center for infectious disease, S
tuberculosis; 1.82A {Mycobacterium smegmatis str}
Length = 381
Score = 28.4 bits (64), Expect = 2.7
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 158 LNEVIRTVDIVVTAT----GNK--NVVTREHMDKMKNGCVVCNM 195
L + I DIV+T T G +VT M+ G VV ++
Sbjct: 259 LEDAITKFDIVIT-TALVPGRPAPRLVTAAAATGMQPGSVVVDL 301
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain,
rossmann fold, oxidoreductase; 1.90A {Escherichia coli}
PDB: 1x14_A* 1x15_A* 2bru_A*
Length = 401
Score = 28.0 bits (63), Expect = 2.8
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 158 LNEVIRTVDIVVTAT----GNK--NVVTREHMDKMKNGCVVCNM 195
+ VDI+VT T G ++TRE +D MK G V+ ++
Sbjct: 249 FAAQAKEVDIIVT-TALIPGKPAPKLITREMVDSMKAGSVIVDL 291
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 28.0 bits (63), Expect = 2.9
Identities = 17/98 (17%), Positives = 40/98 (40%), Gaps = 20/98 (20%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VI----YITEIDPICALQACMDGFS-VVKLNEVI 162
G+ + + GYG++G+ + G V+ ++ +A DGF+ + +
Sbjct: 160 GQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKE------RARADGFAVAESKDALF 213
Query: 163 RTVDIV------VTATGNKNVVTREHMDKMKNGCVVCN 194
D++ T ++++T + +MK + N
Sbjct: 214 EQSDVLSVHLRLNDET--RSIITVADLTRMKPTALFVN 249
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC
transporter; 1.20A {Azotobacter vinelandii} SCOP:
c.94.1.1
Length = 231
Score = 28.0 bits (63), Expect = 3.0
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 29 IPQALALIELFNAPAGR-YKSDVYLLPKKMDEYV----ASLHLP 67
+ QA + A G + + K+ A+ + P
Sbjct: 146 VGQAHSQTASGAADLGFVALAQIIQAAAKIPGSHWFPPANYYEP 189
>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A
{Escherichia coli} PDB: 3sbo_A 2yfg_E
Length = 447
Score = 28.0 bits (63), Expect = 3.1
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 14/62 (22%)
Query: 107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITE-----IDPICALQACMDGFSVVKLNE 160
F G +V + G G V + + G VI ++ +D GF+ KL
Sbjct: 230 FEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDE--------SGFTKEKLAR 281
Query: 161 VI 162
+I
Sbjct: 282 LI 283
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Length = 405
Score = 28.0 bits (63), Expect = 3.1
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 158 LNEVIRTVDIVVTAT----GNK--NVVTREHMDKMKNGCVVCNM 195
+ E I DIV+T T G +VTRE +D MK G VV ++
Sbjct: 269 VAEHIAKQDIVIT-TALIPGRPAPRLVTREMLDSMKPGSVVVDL 311
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural
genomics, NPPSFA, Na project on protein structural and
functional analyses; HET: SKM; 1.65A {Thermus
thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Length = 263
Score = 27.5 bits (62), Expect = 3.6
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-GFSVV 156
+LK + G +VL G G G+ +L+ G +++ P AL + G V
Sbjct: 107 ALKAG-GIPLKGPALVL-GAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAV 164
Query: 157 KLNEVIRTVDIVVTAT 172
L + R ++V AT
Sbjct: 165 PLEK-AREARLLVNAT 179
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 27.6 bits (61), Expect = 3.7
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 112 VVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV 169
+ GYG +G+ Q+L+ + I +P + + F VV E + +VD+ +
Sbjct: 12 AAIVGYGNIGRYALQALREAPDFEIAGIVRRNP-AEVPFELQPFRVVSDIEQLESVDVAL 70
Query: 170 TATGNKNV--VTREHMDKMKN 188
+ ++ V E + K
Sbjct: 71 VCSPSREVERTALEILKKGIC 91
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 27.9 bits (62), Expect = 4.3
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 92 FKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYIT 138
+ +YYSL + G ++ G G VG+ GC ++ T
Sbjct: 1652 YTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTT 1698
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 27.6 bits (62), Expect = 4.6
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 157 KLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMG 196
+ D+V++ +T E + K KN + G
Sbjct: 82 VFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAG 121
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Length = 661
Score = 27.5 bits (61), Expect = 4.9
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 28 IIPQALALIELF-------NAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAH 72
I P A+AL++ F + GRY +VY + + E+ L + H
Sbjct: 599 IRPNAVALVDAFDFKDMTLGSVLGRYDGNVY---ENLFEWAKKSPLNKTEVH 647
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis,
oligomer organization, oxidoreductase; 2.7A {Plasmodium
falciparum}
Length = 470
Score = 27.6 bits (62), Expect = 4.9
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 18/64 (28%)
Query: 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVI--------YITEIDPICALQACMDGFSVVKL 158
+ V+ G G V C Q L L + Y+ +P +GF+ L
Sbjct: 250 VEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYV--YEP--------NGFTHENL 299
Query: 159 NEVI 162
+I
Sbjct: 300 EFLI 303
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 27.2 bits (61), Expect = 5.0
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 12/80 (15%)
Query: 112 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA---------CMDGFSVVKLNEV- 161
V++ G +S+ + I D + DG L +
Sbjct: 3 VIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAE 62
Query: 162 IRTVDIVVTATGN--KNVVT 179
+ D+VV T N+
Sbjct: 63 VSKNDVVVILTPRDEVNLFI 82
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 27.4 bits (61), Expect = 5.0
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 88 KAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ 147
+ G S S+ K VV+ G G GK K G + I AL+
Sbjct: 343 EDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALE 402
Query: 148 -ACMDGFSVVKLNEV----IRTVDIVVTAT 172
A G + L ++ ++ T
Sbjct: 403 LAEAIGGKALSLTDLDNYHPEDGMVLANTT 432
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 27.5 bits (61), Expect = 5.2
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 23/56 (41%)
Query: 133 CVIYITEIDPICA----------------LQACMDGFSVVKLNEVIRTVDIVVTAT 172
+I+I E+D I L MDG + V IV+ AT
Sbjct: 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK--QRAHV-----IVMAAT 347
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A
{Campylobacter jejuni subsp}
Length = 418
Score = 27.3 bits (61), Expect = 5.4
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 19/100 (19%)
Query: 178 VTREHMDKMKNGCVVCNMGHSNTEIDVNSL-RTPDLTWEKVRSQVDHVIW---------- 226
+ + + + + H+ E ++L + EK + + W
Sbjct: 183 IRAKDFENVDLNAIEGLHFHALCEESADALEAVLKVFEEKFGKWIGQMKWVNFGGGHHIT 242
Query: 227 ---PDVNLKNNTVIDLFRKPKSRLYLE-----ILQTCPLV 258
DV + K ++YLE QT LV
Sbjct: 243 KKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLV 282
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 27.0 bits (59), Expect = 5.7
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
Query: 112 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA 171
V L GYG +GK + L+ G EI I ++ + + R +D+ V A
Sbjct: 3 VGLIGYGAIGKFLAEWLERNGF-----EIAAILDVRGEHEKMVRGIDEFLQREMDVAVEA 57
Query: 172 TGNKNVVTREHMDK-MKNG--CVVCNMGHSNTEIDVNSLR 208
+ +++ +K +K G +V + G ++ +R
Sbjct: 58 ASQQ--AVKDYAEKILKAGIDLIVLSTGAFADRDFLSRVR 95
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Length = 1014
Score = 27.1 bits (60), Expect = 7.2
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 39 FNAPAGRYKSDVYLLPKKMDEY---VASLH 65
+ + G Y SD K++ E+ + +H
Sbjct: 543 YFSLTGMYSSDPKNPEKRIAEFKNLINEIH 572
>1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid
biosynthesis, knotted protein, oxidoreductase; 2.60A
{Escherichia coli}
Length = 491
Score = 26.9 bits (60), Expect = 7.9
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIY-----ITEIDPICALQACMDGFSVVKLNEVI 162
GK+VV+ G G G +++ G + Y +A +GF V E+I
Sbjct: 37 GKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELI 96
Query: 163 RTVDIVVTATGNKN--VVTREHMDKMKNG 189
D+V+ T +K V R MK+G
Sbjct: 97 PQADLVINLTPDKQHSDVVRTVQPLMKDG 125
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Length = 714
Score = 27.0 bits (60), Expect = 8.0
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 39 FNAPAGRYKSDVYLLPKKMDEY---VASLH 65
+ + G Y SD K++ E+ + +H
Sbjct: 236 YFSLTGMYSSDPKNPEKRIAEFKNLINEIH 265
>1v0l_A Endo-1,4-beta-xylanase A; glycoside hydrolase family 10, xylan
degradation, isofagomine, hydrolase; 0.98A {Streptomyces
lividans} SCOP: c.1.8.3 PDB: 1e0x_A 1e0w_A* 1od8_A
1v0k_A 1v0m_A 1v0n_A 1e0v_A* 1xas_A 2g3i_A 2g3j_A*
2g4f_A 1v6y_A
Length = 313
Score = 26.5 bits (59), Expect = 8.8
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 126 QSLKGLGCVIYITEIDPICALQA 148
Q+ LG + ITE+D I A
Sbjct: 223 QNFAALGVDVAITELD-IQGAPA 244
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL
oxidoreductase, alpha/beta domain, rossmann fold; HET:
SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A*
3phj_A*
Length = 269
Score = 26.4 bits (59), Expect = 9.8
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 7/69 (10%)
Query: 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI---TEIDPICALQACMDGFSVVKLNEVIR 163
+ ++ G G K LK G + + + L +
Sbjct: 116 KNYQNALILGAGGSAKALACELKKQGLQVSVLNRSSR----GLDFFQRLGCDCFMEPPKS 171
Query: 164 TVDIVVTAT 172
D+++ AT
Sbjct: 172 AFDLIINAT 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.424
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,915,064
Number of extensions: 227936
Number of successful extensions: 629
Number of sequences better than 10.0: 1
Number of HSP's gapped: 594
Number of HSP's successfully gapped: 111
Length of query: 258
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 166
Effective length of database: 4,133,061
Effective search space: 686088126
Effective search space used: 686088126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)