RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16115
(258 letters)
>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 163
Score = 163 bits (413), Expect = 2e-51
Identities = 69/132 (52%), Positives = 91/132 (68%), Gaps = 1/132 (0%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
L R+TD + GK VV+CGYG+VGKGC S+KGLG +YITEIDPICA+QA M+GF+VV
Sbjct: 12 GLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVT 71
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT-PDLTWEK 216
L+E++ D +T TGN +V+ EH+ KMKN VV N+GH + EI VN L + E
Sbjct: 72 LDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIEN 131
Query: 217 VRSQVDHVIWPD 228
V+ QVD + P+
Sbjct: 132 VKPQVDRITLPN 143
>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 163
Score = 140 bits (354), Expect = 1e-42
Identities = 57/131 (43%), Positives = 83/131 (63%)
Query: 98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
+KR+TDVM GK V+ GYG+VGKGC Q+L+G G + ITEIDPI ALQA M+G+ V
Sbjct: 13 GIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTT 72
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
++E + +I VT TG +++ H ++MK+ +VCN+GH + EIDV L + +
Sbjct: 73 MDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNI 132
Query: 218 RSQVDHVIWPD 228
+ QVD +
Sbjct: 133 KPQVDRYRLKN 143
>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein
hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId:
5833]}
Length = 313
Score = 107 bits (269), Expect = 3e-28
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 31 QALALIELF-NAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKA 89
Q A ++L+ N +Y++ VYLLPK +DE VA HL +A LTEL D Q +++G+NK+
Sbjct: 244 QTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKS 303
Query: 90 GPFKPSYY 97
GPFK + Y
Sbjct: 304 GPFKSNEY 311
Score = 30.3 bits (68), Expect = 0.23
Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 129 KGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMD 184
+I ++E V++L ++ + +++ TA + VT++ D
Sbjct: 186 NIAKKIIGVSEETTTG----------VLRLKKMDKQNELLFTAINVNDAVTKQKYD 231
>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein
hydrolase {Human (Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 96.1 bits (239), Expect = 2e-24
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 31 QALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG 90
Q +A IEL+ P +Y V+ LPKK+DE VA HL + LT+L+++QA+Y+G++ G
Sbjct: 200 QVMAQIELWTHP-DKYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMSCDG 258
Query: 91 PFKPSYY 97
PFKP +Y
Sbjct: 259 PFKPDHY 265
>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 129
Score = 41.0 bits (95), Expect = 2e-05
Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 20/128 (15%)
Query: 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK---------LNE 160
+ VV+CG+ E C + L+G +++ D + G + V
Sbjct: 1 RHVVICGWSESTLECLRELRGSE--VFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKA 58
Query: 161 VIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQ 220
+R V+ + + + K V + + ++ LR +
Sbjct: 59 NVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLR---------MAG 109
Query: 221 VDHVIWPD 228
D VI P
Sbjct: 110 ADQVISPF 117
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase
{Rhodococcus sp., M4 [TaxId: 1831]}
Length = 201
Score = 40.9 bits (95), Expect = 5e-05
Identities = 19/108 (17%), Positives = 33/108 (30%)
Query: 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVD 166
G V++ G G VG G + + + D A G + V L +V+ T
Sbjct: 25 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPC 84
Query: 167 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTW 214
V V+T E + V + + + +
Sbjct: 85 DVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGIL 132
>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch
{Escherichia coli [TaxId: 562]}
Length = 153
Score = 38.7 bits (89), Expect = 2e-04
Identities = 13/130 (10%), Positives = 34/130 (26%), Gaps = 22/130 (16%)
Query: 112 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA------------CMDGFSVVKLN 159
++CG+ + L G + + P ++ D L
Sbjct: 6 FIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLK 65
Query: 160 EV-IRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR 218
+ I ++ + N + V + + ++N ++
Sbjct: 66 KAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIK---------M 116
Query: 219 SQVDHVIWPD 228
D ++ P
Sbjct: 117 VHPDIILSPQ 126
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 37.6 bits (86), Expect = 3e-04
Identities = 19/128 (14%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG---------FSVVKLNE 160
KQ + G G G + L +G + +I+ L+
Sbjct: 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSL 60
Query: 161 VIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQ 220
IR + V+ A G + +K + + L +
Sbjct: 61 GIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLE---------KIG 111
Query: 221 VDHVIWPD 228
D +I P+
Sbjct: 112 ADRIIHPE 119
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus
sphaericus [TaxId: 1421]}
Length = 230
Score = 38.1 bits (88), Expect = 5e-04
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 6/105 (5%)
Query: 96 YYSLKRSTDVMFG-----GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM 150
Y +K + FG G V + G G V K C+ L G + +T+++ A
Sbjct: 21 YRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVA 80
Query: 151 DGFSVVKLNEVIRTVDI-VVTATGNKNVVTREHMDKMKNGCVVCN 194
+ + I V + V+ + ++K + +
Sbjct: 81 EEGADAVAPNAIYGVTCDIFAPCALGAVLNDFTIPQLKAKVIAGS 125
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 132
Score = 35.3 bits (80), Expect = 0.002
Identities = 18/117 (15%), Positives = 40/117 (34%)
Query: 112 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA 171
+++ G G VG +SL G I + +ID +A + ++V + + +
Sbjct: 3 IIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAG 62
Query: 172 TGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPD 228
+ ++ + N + + + R VD V+ P+
Sbjct: 63 IEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPE 119
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase
{Pseudomonas sp., strain 101 [TaxId: 306]}
Length = 186
Score = 34.9 bits (80), Expect = 0.004
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 156 VKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 208
+ D+V++ +T E + K KN + G + +D+ S
Sbjct: 81 SVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAI 133
>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate
dehydrogenase/cyclohydrolase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 171
Score = 34.3 bits (78), Expect = 0.006
Identities = 22/129 (17%), Positives = 39/129 (30%), Gaps = 15/129 (11%)
Query: 97 YSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQA------- 148
Y+ GK+ ++ E VG+ L G +Y +++ I
Sbjct: 17 YNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLN 76
Query: 149 ---CMDGFSVVK--LNEVIRTVDIVVTATGNKNVVTREHMDK--MKNGCVVCNMGHSNTE 201
D + L + D+V+T ++N K C S+
Sbjct: 77 KHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNFSDDV 136
Query: 202 IDVNSLRTP 210
+ SL P
Sbjct: 137 KEKASLYVP 145
>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase
(KARI) {Pseudomonas aeruginosa [TaxId: 287]}
Length = 182
Score = 32.1 bits (73), Expect = 0.038
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSVVKLNEVIRTVDI 167
GK+V + GYG G +LK G + + + G V + + D+
Sbjct: 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADV 75
Query: 168 VVTATGN---KNVVTREHMDKMKNGCVVC 193
V+ T + + E +K G +
Sbjct: 76 VMILTPDEFQGRLYKEEIEPNLKKGATLA 104
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate
ligase MurD {Escherichia coli [TaxId: 562]}
Length = 93
Score = 30.0 bits (67), Expect = 0.067
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLN----EVI 162
+ GK VV+ G G G C G + + + E +
Sbjct: 3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWL 62
Query: 163 RTVDIVVTATG 173
D++V + G
Sbjct: 63 MAADLIVASPG 73
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos
taurus) [TaxId: 9913]}
Length = 293
Score = 31.2 bits (70), Expect = 0.097
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 22/119 (18%)
Query: 107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTV 165
FG K + G+G VG + L G + + E D +D + T+
Sbjct: 34 FGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTI 93
Query: 166 ------------------DIVVTATGNKNVVTREHMDKMKNGCVVC--NMGHSNTEIDV 204
DI++ A ++ +T+ + ++K + N + +
Sbjct: 94 LGFPKAKIYEGSILEVDCDILIPA-ASEKQLTKSNAPRVKAKIIAEGANGPTTPQADKI 151
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 239
Score = 29.7 bits (66), Expect = 0.31
Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 1/97 (1%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIV 168
GK + + GYG G + + + + D DG + ++ + V
Sbjct: 32 GKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDS-KGGIYNPDGLNADEVLKWKNEHGSV 90
Query: 169 VTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVN 205
G N+ E ++ + + T+ + +
Sbjct: 91 KDFPGATNITNEELLELEVDVLAPAAIEEVITKKNAD 127
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 29.4 bits (65), Expect = 0.36
Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 22/130 (16%)
Query: 74 TELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC 133
TE++ AK + + + + + G Q
Sbjct: 63 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQ-----NG 117
Query: 134 VIYITEIDPIC-----------------ALQACMDGFSVVKLNEVIRTVDIVVTATGNKN 176
+++I EID IC L ++G +V + +++T I+ A+G
Sbjct: 118 IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQ 177
Query: 177 VVTREHMDKM 186
V +
Sbjct: 178 VARPSDLIPE 187
>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol
dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}
Length = 187
Score = 28.8 bits (63), Expect = 0.44
Identities = 16/118 (13%), Positives = 30/118 (25%), Gaps = 13/118 (11%)
Query: 95 SYYSLKRSTDVMFGGKQVVLC--GYGEVGKGCCQSLKGLGCVIYIT--EIDPICALQACM 150
S ++ + G Q ++ G G Q LGC + C
Sbjct: 16 SLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSE 75
Query: 151 DGFSVVKLNEVIRTVDIVVTATGNKNVV---------TREHMDKMKNGCVVCNMGHSN 199
GF + + + A V + + +M + G +
Sbjct: 76 LGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVGGDISNTVISQMNENSHIILCGQIS 133
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 28.0 bits (61), Expect = 0.93
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Query: 100 KRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLN 159
+ GK++ + GYG +G + LG +Y +I+ L + L
Sbjct: 35 LAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLL 94
Query: 160 EVIRTVDIVVTAT-GNKNVVTREHMDKMKNGCVVCNMGH 197
+ V + V KN++ + + MK G ++ N
Sbjct: 95 NMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASR 133
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II,
domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 181
Score = 27.1 bits (60), Expect = 1.9
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 7/29 (24%)
Query: 30 PQALALIELF-------NAPAGRYKSDVY 51
P A+AL++ F + GRY +VY
Sbjct: 127 PNAVALVDAFDFKDMTLGSVLGRYDGNVY 155
>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus
cereus [TaxId: 1396]}
Length = 370
Score = 27.4 bits (60), Expect = 2.2
Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 10/111 (9%)
Query: 43 AGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYS--LK 100
+ + K D + + H D ++D A+ +GL P+Y K
Sbjct: 78 TDKAYGKIIEKCIKNDIAIYAAHTN-VDVAKGGVNDLLAEALGLQNTEVLAPTYAEEMKK 136
Query: 101 RSTDVMFGGKQVVLCGYGEVGKG-------CCQSLKGLGCVIYITEIDPIC 144
V + V G+ G G C S +G G + +P
Sbjct: 137 VVVFVPVTHAEEVRKALGDAGAGHIGNYSHCTFSSEGTGTFVPQEGTNPYI 187
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 242
Score = 27.1 bits (59), Expect = 2.3
Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 8/106 (7%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVI-----R 163
GK V + G G VG+ L+ +G + + I + +G +V + +
Sbjct: 31 GKTVAIQGMGNVGRWTAYWLEKMGAKVIA--VSDINGVAYRKEGLNVELIQKNKGLTGPA 88
Query: 164 TVDIVVTATGNKNVVTREHMDKMKNGCVV-CNMGHSNTEIDVNSLR 208
V++ T + V + + K+ V + + + ++
Sbjct: 89 LVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAIENVIRGDNAGLVK 134
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide
dehydrogenase, FCSD, flavin-binding subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 186
Score = 26.7 bits (57), Expect = 2.7
Identities = 14/99 (14%), Positives = 29/99 (29%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIV 168
G++VV+ G G G + +K I +T I+P C V+ + + ++
Sbjct: 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHG 61
Query: 169 VTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL 207
+ + E +
Sbjct: 62 YDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRC 100
>d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3
and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 198
Score = 26.4 bits (58), Expect = 2.7
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 7/29 (24%)
Query: 30 PQALALIELF-------NAPAGRYKSDVY 51
P A+AL++ F N+ GRY +VY
Sbjct: 137 PNAVALVDAFNYTDHYLNSVLGRYDGNVY 165
>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 130
Score = 25.8 bits (56), Expect = 3.0
Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 2/97 (2%)
Query: 95 SYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYIT--EIDPICALQACMDG 152
S ++ +F K + + G G+ L G +YI +
Sbjct: 20 SACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRA 79
Query: 153 FSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNG 189
S K++ + + + G ++V+ + + G
Sbjct: 80 LSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTG 116
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 255
Score = 26.2 bits (57), Expect = 4.2
Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 14/129 (10%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRT--- 164
GK V L G+G V G + L LG + ++ D +G + + +
Sbjct: 36 GKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYI---YDPEGITTEEKINYMLEMRA 92
Query: 165 -----VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRS 219
V G + + + + + C + + ++ +
Sbjct: 93 SGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKY--YIE 150
Query: 220 QVDHVIWPD 228
+ +
Sbjct: 151 VANMPTTNE 159
>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide
transhydrogenase dI component {Rhodospirillum rubrum
[TaxId: 1085]}
Length = 183
Score = 25.7 bits (56), Expect = 4.3
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 112 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA 171
V++ G G G + K LG V+ T++ Q G + ++ + TA
Sbjct: 32 VLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVD--DEAMKTAETA 89
Query: 172 TGNKNVVTREHMDKMKN 188
G + E K
Sbjct: 90 GGYAKEMGEEFRKKQAE 106
>d2h1ta1 b.178.1.1 (A:2-187) Hypothetical protein PA1994
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 186
Score = 25.6 bits (56), Expect = 4.8
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 208 RTPDLTWEKVRSQVDHVIW 226
R+P +WE +R + D
Sbjct: 13 RSPSSSWEALRLEDDQAES 31
>d2i9wa3 g.74.1.1 (A:159-183) Hypothetical protein Psyc2064
{Psychrobacter arcticus [TaxId: 334543]}
Length = 26
Score = 23.0 bits (49), Expect = 5.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 110 KQVVLCGYGEVGKGCC 125
KQ +CG GE K CC
Sbjct: 6 KQPCICGSGEKFKRCC 21
>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme)
{Thermotoga maritima [TaxId: 2336]}
Length = 222
Score = 25.4 bits (55), Expect = 6.1
Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 19/131 (14%)
Query: 112 VVLCGYGEVGKGCCQSLKGLG----------CVIYITEIDPIC--ALQACMDGFSVVKLN 159
VV+ G G G + L LG ++ + + + +L+
Sbjct: 29 VVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLS 88
Query: 160 EVIRTVDIVVTATG---NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEK 216
+ T N++ E + KM V+ + + EID R
Sbjct: 89 GDLETALEGADFFIGVSRGNILKPEWIKKMSRKPVIFALANPVPEIDPELAR----EAGA 144
Query: 217 VRSQVDHVIWP 227
P
Sbjct: 145 FIVATGRSDHP 155
>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase
(KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 226
Score = 25.6 bits (56), Expect = 6.4
Identities = 20/104 (19%), Positives = 31/104 (29%), Gaps = 14/104 (13%)
Query: 104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-------VIYITEIDPICALQACMDGFSVV 156
D G KQ+ + G+G Q+LK V +A GFS
Sbjct: 39 DAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEE 98
Query: 157 KLN-----EVIRTVDIVVTATGNKN--VVTREHMDKMKNGCVVC 193
E I D+V+ + + MK ++
Sbjct: 99 NGTLGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILG 142
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice
blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 182
Score = 25.4 bits (54), Expect = 7.2
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP 142
K V++ G G V + L G + +
Sbjct: 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL 35
>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase
{Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}
Length = 388
Score = 25.4 bits (54), Expect = 8.2
Identities = 6/59 (10%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 150 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCV-VCNMGHSNTEIDVNSL 207
+ + + + + + + A N ++ + + V MG +T +
Sbjct: 313 LPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFY 371
>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 115
Score = 24.4 bits (52), Expect = 8.4
Identities = 10/54 (18%), Positives = 22/54 (40%)
Query: 173 GNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIW 226
+ +T + +K + ++GHS + L D ++R + D V+
Sbjct: 59 TYDSELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLV 112
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 234
Score = 25.1 bits (54), Expect = 9.4
Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 1/100 (1%)
Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIV 168
V + G+G VG+ + + D + +GF V +L + V
Sbjct: 31 KATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIY-NPEGFDVEELIRYKKEHGTV 89
Query: 169 VTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 208
VT + + E ++ + V + + + ++
Sbjct: 90 VTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIK 129
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.424
Gapped
Lambda K H
0.267 0.0525 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 965,617
Number of extensions: 44097
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 41
Length of query: 258
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,268,006
Effective search space: 221901050
Effective search space used: 221901050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)