Query psy16116
Match_columns 612
No_of_seqs 394 out of 2064
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 21:17:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1365|consensus 100.0 5E-36 1.1E-40 310.1 12.9 173 52-283 280-456 (508)
2 KOG4211|consensus 100.0 7.7E-34 1.7E-38 302.6 20.5 263 54-524 15-358 (510)
3 KOG4211|consensus 100.0 2.4E-32 5.3E-37 291.2 21.4 263 323-609 5-312 (510)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7.5E-29 1.6E-33 261.6 22.4 158 341-522 5-169 (352)
5 TIGR01628 PABP-1234 polyadenyl 100.0 1.5E-27 3.2E-32 268.2 31.2 209 350-611 103-318 (562)
6 TIGR01628 PABP-1234 polyadenyl 100.0 2.7E-28 5.9E-33 274.1 19.9 206 341-611 2-211 (562)
7 KOG1365|consensus 100.0 3.1E-28 6.7E-33 252.5 12.0 237 348-607 73-310 (508)
8 KOG0127|consensus 99.9 1.8E-26 3.8E-31 248.0 18.5 177 341-525 7-197 (678)
9 TIGR01648 hnRNP-R-Q heterogene 99.9 6.4E-26 1.4E-30 253.8 17.6 199 342-612 61-269 (578)
10 TIGR01622 SF-CC1 splicing fact 99.9 4.3E-24 9.4E-29 233.7 22.9 170 341-522 91-264 (457)
11 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.6E-23 3.6E-28 231.9 22.9 246 323-612 173-453 (509)
12 TIGR01659 sex-lethal sex-letha 99.9 5.7E-24 1.2E-28 226.5 18.1 163 338-524 106-275 (346)
13 KOG0117|consensus 99.9 8E-24 1.7E-28 223.7 18.4 200 341-612 85-293 (506)
14 TIGR01645 half-pint poly-U bin 99.9 1.2E-23 2.5E-28 236.3 17.4 168 342-522 110-282 (612)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.5E-22 3.2E-27 224.5 23.1 163 341-523 4-173 (481)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.5E-22 5.4E-27 222.6 22.5 243 342-610 99-428 (481)
17 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.1E-22 4.5E-27 212.7 20.0 175 342-524 92-349 (352)
18 KOG4307|consensus 99.9 2.2E-20 4.7E-25 205.2 23.3 188 332-526 304-516 (944)
19 TIGR01648 hnRNP-R-Q heterogene 99.9 3.9E-21 8.4E-26 215.6 17.7 215 344-606 143-369 (578)
20 KOG0123|consensus 99.9 4.5E-21 9.8E-26 205.8 16.5 191 349-612 8-201 (369)
21 KOG0148|consensus 99.8 2.4E-20 5.1E-25 187.4 15.3 157 350-522 77-236 (321)
22 KOG0123|consensus 99.8 1.7E-19 3.7E-24 193.6 16.6 220 342-610 79-302 (369)
23 TIGR01659 sex-lethal sex-letha 99.8 3.8E-19 8.2E-24 189.7 13.2 119 437-611 106-226 (346)
24 KOG0145|consensus 99.8 1.7E-18 3.8E-23 173.1 16.6 238 343-610 49-310 (360)
25 KOG4205|consensus 99.8 1.3E-19 2.9E-24 189.4 8.5 169 342-528 9-180 (311)
26 KOG0131|consensus 99.8 6.2E-19 1.3E-23 168.8 11.4 163 341-525 11-178 (203)
27 KOG0127|consensus 99.8 4.4E-18 9.5E-23 183.8 15.4 179 341-527 119-382 (678)
28 KOG0148|consensus 99.8 3.1E-18 6.8E-23 172.2 13.2 185 342-610 9-196 (321)
29 KOG0144|consensus 99.8 3.8E-18 8.3E-23 180.2 12.3 161 339-522 34-204 (510)
30 TIGR01642 U2AF_lg U2 snRNP aux 99.8 1.8E-17 3.9E-22 183.8 17.6 167 350-527 310-505 (509)
31 TIGR01622 SF-CC1 splicing fact 99.7 2.5E-17 5.5E-22 180.4 15.3 131 437-611 88-219 (457)
32 TIGR01645 half-pint poly-U bin 99.7 9.1E-18 2E-22 189.1 11.7 129 438-611 107-237 (612)
33 KOG0117|consensus 99.7 3.6E-17 7.8E-22 173.6 12.8 170 333-528 158-335 (506)
34 KOG0124|consensus 99.7 4.9E-17 1.1E-21 168.7 8.5 168 340-521 114-287 (544)
35 KOG0147|consensus 99.7 2.2E-16 4.7E-21 171.5 10.3 166 344-522 188-356 (549)
36 KOG0110|consensus 99.6 8.1E-16 1.8E-20 170.9 11.6 172 342-528 518-697 (725)
37 KOG0110|consensus 99.6 1.6E-15 3.5E-20 168.6 13.0 223 338-612 384-647 (725)
38 KOG0145|consensus 99.5 1.1E-13 2.4E-18 138.9 14.7 170 342-521 130-355 (360)
39 PLN03134 glycine-rich RNA-bind 99.5 6.6E-14 1.4E-18 132.2 11.0 79 437-523 33-113 (144)
40 PF00076 RRM_1: RNA recognitio 99.5 1.7E-13 3.7E-18 110.6 9.3 69 441-517 1-70 (70)
41 KOG0109|consensus 99.5 8.3E-14 1.8E-18 141.8 8.7 143 341-523 4-149 (346)
42 PF14259 RRM_6: RNA recognitio 99.4 4.2E-13 9.1E-18 109.7 9.3 69 441-517 1-70 (70)
43 KOG4205|consensus 99.4 1.7E-13 3.6E-18 143.9 6.2 122 437-608 5-127 (311)
44 KOG4307|consensus 99.4 2.2E-12 4.7E-17 143.0 11.5 154 437-612 310-472 (944)
45 KOG0149|consensus 99.4 8.6E-13 1.9E-17 131.3 7.2 77 438-522 12-89 (247)
46 KOG4212|consensus 99.4 8E-12 1.7E-16 132.8 14.8 172 341-520 46-290 (608)
47 PLN03120 nucleic acid binding 99.4 2.3E-12 5E-17 131.5 10.1 75 438-522 4-78 (260)
48 KOG0131|consensus 99.4 1.1E-12 2.4E-17 126.2 7.0 118 435-607 6-125 (203)
49 COG0724 RNA-binding proteins ( 99.3 7.8E-12 1.7E-16 122.5 12.8 141 438-610 115-257 (306)
50 KOG0125|consensus 99.3 1.9E-12 4E-17 133.8 8.4 79 438-525 96-175 (376)
51 KOG0144|consensus 99.3 3.2E-12 7E-17 135.8 7.9 115 437-606 33-152 (510)
52 KOG0124|consensus 99.3 2.2E-12 4.8E-17 134.4 5.7 126 439-610 114-242 (544)
53 PLN03121 nucleic acid binding 99.3 9.5E-12 2.1E-16 125.4 10.0 76 437-522 4-79 (243)
54 KOG0105|consensus 99.2 8.3E-11 1.8E-15 113.6 13.2 157 339-511 6-175 (241)
55 KOG0146|consensus 99.2 2.2E-11 4.8E-16 123.0 9.6 77 436-520 283-361 (371)
56 smart00362 RRM_2 RNA recogniti 99.2 4.8E-11 1E-15 94.6 8.9 70 440-518 1-71 (72)
57 KOG4212|consensus 99.2 2.3E-10 5E-15 121.9 14.5 84 438-528 44-128 (608)
58 cd00590 RRM RRM (RNA recogniti 99.2 2.3E-10 5E-15 91.1 9.7 72 440-519 1-73 (74)
59 KOG0109|consensus 99.2 5.2E-11 1.1E-15 121.6 7.0 107 440-611 4-111 (346)
60 smart00360 RRM RNA recognition 99.1 1.9E-10 4.1E-15 90.7 8.3 68 443-518 1-70 (71)
61 KOG0122|consensus 99.1 1.7E-10 3.7E-15 115.5 9.2 80 436-523 187-268 (270)
62 KOG0105|consensus 99.1 6.4E-10 1.4E-14 107.5 12.5 140 438-610 6-147 (241)
63 KOG0106|consensus 99.1 1.6E-10 3.5E-15 115.4 8.1 162 327-523 3-170 (216)
64 PLN03213 repressor of silencin 99.1 4.4E-10 9.5E-15 121.2 10.6 80 437-527 9-91 (759)
65 KOG0125|consensus 99.0 1.1E-09 2.3E-14 113.7 11.2 75 341-416 98-174 (376)
66 PLN03134 glycine-rich RNA-bind 99.0 5.8E-10 1.3E-14 105.4 7.5 76 341-416 36-114 (144)
67 KOG0113|consensus 99.0 8.5E-10 1.8E-14 113.2 9.0 80 437-524 100-181 (335)
68 PF14259 RRM_6: RNA recognitio 99.0 5.9E-10 1.3E-14 91.0 6.3 68 342-409 1-70 (70)
69 KOG4207|consensus 99.0 6.6E-10 1.4E-14 109.0 6.0 77 438-522 13-91 (256)
70 KOG0108|consensus 99.0 1.3E-09 2.7E-14 119.4 8.9 77 439-523 19-97 (435)
71 KOG0121|consensus 99.0 1.2E-09 2.7E-14 100.1 7.1 77 437-521 35-113 (153)
72 PF00076 RRM_1: RNA recognitio 99.0 8.1E-10 1.8E-14 89.0 5.3 67 343-409 2-70 (70)
73 KOG0226|consensus 98.9 1.9E-08 4.2E-13 101.5 14.2 139 369-525 130-271 (290)
74 KOG0114|consensus 98.9 8.8E-09 1.9E-13 91.5 9.9 83 437-529 17-100 (124)
75 smart00361 RRM_1 RNA recogniti 98.9 6.3E-09 1.4E-13 86.1 8.1 60 451-518 1-69 (70)
76 KOG0126|consensus 98.9 2.9E-10 6.3E-15 109.6 -0.4 77 437-521 34-112 (219)
77 COG0724 RNA-binding proteins ( 98.9 1.1E-08 2.3E-13 100.3 10.5 157 340-504 116-284 (306)
78 KOG0149|consensus 98.8 3.2E-09 6.9E-14 106.2 5.1 74 341-414 14-89 (247)
79 PLN03120 nucleic acid binding 98.8 6.7E-09 1.5E-13 106.4 6.9 73 341-415 6-79 (260)
80 KOG0111|consensus 98.7 7.6E-09 1.6E-13 102.4 3.9 82 437-526 9-92 (298)
81 KOG0107|consensus 98.7 3.8E-08 8.2E-13 94.7 7.9 75 437-523 9-84 (195)
82 KOG1548|consensus 98.7 3E-07 6.6E-12 96.4 15.0 170 342-522 137-350 (382)
83 PLN03121 nucleic acid binding 98.7 2.3E-08 5E-13 101.2 6.6 73 341-415 7-80 (243)
84 KOG0128|consensus 98.7 4.6E-09 1E-13 119.7 1.6 146 337-523 665-814 (881)
85 KOG0130|consensus 98.7 3.3E-08 7.2E-13 91.5 6.5 78 437-522 71-150 (170)
86 KOG4206|consensus 98.7 2.5E-07 5.3E-12 92.4 13.1 156 439-608 10-179 (221)
87 KOG4206|consensus 98.7 5E-07 1.1E-11 90.2 15.3 172 325-520 9-218 (221)
88 KOG0147|consensus 98.7 1.8E-08 3.9E-13 110.6 4.7 134 437-612 178-312 (549)
89 smart00362 RRM_2 RNA recogniti 98.6 6.9E-08 1.5E-12 76.3 6.8 64 343-410 3-71 (72)
90 PF13893 RRM_5: RNA recognitio 98.6 1.2E-07 2.6E-12 74.6 7.5 55 455-521 1-56 (56)
91 smart00360 RRM RNA recognition 98.6 1.5E-07 3.3E-12 73.9 6.9 63 345-410 6-70 (71)
92 KOG0122|consensus 98.6 1.2E-07 2.6E-12 95.5 7.0 78 338-415 188-268 (270)
93 KOG1457|consensus 98.6 1.2E-06 2.6E-11 87.4 13.8 55 438-505 210-266 (284)
94 KOG4210|consensus 98.5 8.1E-08 1.7E-12 100.5 5.6 166 342-521 91-261 (285)
95 cd00590 RRM RRM (RNA recogniti 98.5 3.1E-07 6.7E-12 72.9 7.3 69 343-411 3-73 (74)
96 smart00361 RRM_1 RNA recogniti 98.5 3.1E-07 6.6E-12 76.0 7.4 61 350-410 3-69 (70)
97 KOG0128|consensus 98.5 2.2E-08 4.7E-13 114.4 -1.0 178 351-609 588-767 (881)
98 KOG1457|consensus 98.4 1.2E-06 2.6E-11 87.3 10.3 78 436-521 32-115 (284)
99 KOG0108|consensus 98.4 3.8E-07 8.3E-12 100.1 6.4 76 340-415 19-97 (435)
100 PLN03213 repressor of silencin 98.4 4.2E-07 9.1E-12 98.6 6.0 73 340-415 11-87 (759)
101 KOG4208|consensus 98.4 9E-07 1.9E-11 87.3 7.5 81 437-524 48-130 (214)
102 KOG1190|consensus 98.3 1E-05 2.2E-10 86.6 15.4 229 339-603 150-439 (492)
103 KOG1190|consensus 98.3 7.5E-06 1.6E-10 87.6 14.2 168 339-521 297-488 (492)
104 KOG0121|consensus 98.3 4.8E-07 1.1E-11 83.3 4.5 78 336-413 33-113 (153)
105 KOG0113|consensus 98.3 8.4E-07 1.8E-11 91.6 6.8 72 341-412 103-177 (335)
106 KOG4207|consensus 98.3 3.7E-07 8E-12 90.0 3.8 74 341-414 15-91 (256)
107 KOG4454|consensus 98.3 2.8E-07 6E-12 91.6 2.1 131 337-505 7-143 (267)
108 KOG0533|consensus 98.3 2E-06 4.4E-11 87.8 8.1 82 438-527 83-165 (243)
109 KOG0106|consensus 98.3 1.5E-06 3.2E-11 87.3 6.5 126 440-608 3-129 (216)
110 PF13893 RRM_5: RNA recognitio 98.3 3.2E-06 6.8E-11 66.5 7.0 53 353-412 2-55 (56)
111 KOG0120|consensus 98.2 2.3E-06 4.9E-11 95.0 8.3 139 377-523 221-368 (500)
112 KOG0129|consensus 98.2 1.4E-05 3.1E-10 87.8 13.3 132 380-522 307-452 (520)
113 KOG0116|consensus 98.2 4E-06 8.6E-11 91.8 7.8 76 439-521 289-364 (419)
114 KOG4209|consensus 98.1 2.8E-06 6.1E-11 86.5 5.8 78 437-522 100-178 (231)
115 KOG0146|consensus 98.1 7.9E-05 1.7E-09 76.2 15.8 78 336-413 282-362 (371)
116 KOG0120|consensus 98.1 1.9E-05 4.2E-10 87.8 11.7 170 346-526 300-494 (500)
117 KOG0107|consensus 98.1 8.2E-06 1.8E-10 78.9 7.3 72 341-416 12-85 (195)
118 KOG0415|consensus 98.1 5.6E-06 1.2E-10 87.2 6.3 77 437-521 238-316 (479)
119 KOG0111|consensus 98.1 4.4E-06 9.5E-11 83.2 5.0 76 341-416 12-90 (298)
120 KOG0126|consensus 98.1 1E-06 2.3E-11 85.4 0.5 79 336-414 32-113 (219)
121 KOG4661|consensus 98.0 9.8E-06 2.1E-10 89.4 7.2 80 437-524 404-485 (940)
122 KOG0153|consensus 98.0 1.2E-05 2.6E-10 84.6 7.5 74 437-523 227-302 (377)
123 KOG0132|consensus 98.0 1.3E-05 2.9E-10 91.3 7.6 75 437-524 420-495 (894)
124 KOG0129|consensus 97.9 3.8E-05 8.1E-10 84.6 10.0 136 438-610 259-403 (520)
125 KOG1548|consensus 97.9 3.7E-05 8E-10 81.0 8.1 84 439-522 135-219 (382)
126 KOG0114|consensus 97.9 2.8E-05 6.2E-10 69.5 6.2 74 341-416 20-95 (124)
127 KOG4208|consensus 97.9 2.7E-05 5.8E-10 77.1 6.6 68 347-416 61-130 (214)
128 KOG0130|consensus 97.7 3.4E-05 7.4E-10 71.9 4.3 73 341-413 74-149 (170)
129 KOG1456|consensus 97.6 0.0088 1.9E-07 64.1 20.2 167 334-512 282-473 (494)
130 KOG0226|consensus 97.6 3.9E-05 8.4E-10 78.1 2.5 80 338-417 189-271 (290)
131 PF04059 RRM_2: RNA recognitio 97.5 0.0007 1.5E-08 60.3 10.1 82 439-526 2-89 (97)
132 KOG1456|consensus 97.5 0.0078 1.7E-07 64.5 19.0 141 437-603 286-431 (494)
133 KOG4454|consensus 97.4 4.9E-05 1.1E-09 75.9 1.5 76 437-521 8-84 (267)
134 KOG4210|consensus 97.4 0.00011 2.5E-09 77.1 3.5 129 437-611 87-218 (285)
135 KOG4209|consensus 97.1 0.00051 1.1E-08 70.2 4.8 73 341-413 103-177 (231)
136 KOG0533|consensus 97.0 0.0012 2.6E-08 67.8 5.9 76 340-415 84-161 (243)
137 KOG0116|consensus 97.0 0.0064 1.4E-07 67.1 11.7 69 342-412 291-363 (419)
138 KOG4849|consensus 96.9 0.00093 2E-08 70.7 4.6 84 435-524 77-162 (498)
139 PF08777 RRM_3: RNA binding mo 96.9 0.0036 7.9E-08 56.4 7.7 77 439-528 2-84 (105)
140 KOG4661|consensus 96.8 0.0068 1.5E-07 67.7 10.4 69 344-415 410-484 (940)
141 KOG0415|consensus 96.8 0.0026 5.7E-08 67.6 6.7 75 327-414 241-317 (479)
142 KOG0153|consensus 96.7 0.0047 1E-07 65.6 7.8 59 349-415 242-302 (377)
143 PF11608 Limkain-b1: Limkain b 96.6 0.0074 1.6E-07 52.4 7.0 68 439-522 3-75 (90)
144 KOG0132|consensus 96.6 0.0034 7.5E-08 72.2 6.3 107 339-461 421-529 (894)
145 KOG4660|consensus 96.5 0.0022 4.8E-08 71.5 4.0 69 437-517 74-143 (549)
146 KOG1995|consensus 96.5 0.0023 5E-08 68.1 3.7 85 437-524 65-154 (351)
147 KOG1924|consensus 96.3 0.0075 1.6E-07 69.6 6.9 15 292-306 591-605 (1102)
148 PF05172 Nup35_RRM: Nup53/35/4 95.7 0.022 4.8E-07 51.1 5.8 76 438-521 6-89 (100)
149 KOG0112|consensus 95.6 0.011 2.5E-07 69.1 4.5 152 341-523 374-530 (975)
150 KOG0115|consensus 95.6 0.024 5.3E-07 58.2 6.3 99 392-521 7-111 (275)
151 KOG0151|consensus 95.5 0.024 5.2E-07 65.0 6.5 77 437-521 173-254 (877)
152 KOG1924|consensus 95.1 0.088 1.9E-06 61.2 9.1 7 220-226 510-516 (1102)
153 COG5175 MOT2 Transcriptional r 94.9 0.056 1.2E-06 57.4 6.6 80 438-525 114-204 (480)
154 PF14605 Nup35_RRM_2: Nup53/35 94.8 0.059 1.3E-06 42.7 4.9 52 439-504 2-53 (53)
155 PF04059 RRM_2: RNA recognitio 94.5 0.092 2E-06 46.9 5.9 63 341-404 3-71 (97)
156 KOG2314|consensus 94.4 0.052 1.1E-06 61.0 5.2 75 437-519 57-139 (698)
157 PF11608 Limkain-b1: Limkain b 94.3 0.17 3.8E-06 44.1 7.0 36 379-414 39-75 (90)
158 PF10309 DUF2414: Protein of u 93.9 0.26 5.5E-06 40.6 7.0 55 439-505 6-60 (62)
159 KOG1995|consensus 93.6 0.068 1.5E-06 57.3 4.0 80 337-416 64-154 (351)
160 KOG2314|consensus 93.5 0.13 2.9E-06 57.8 6.2 69 338-406 57-133 (698)
161 KOG3152|consensus 93.2 0.065 1.4E-06 55.2 2.9 71 437-515 73-157 (278)
162 KOG1855|consensus 93.1 0.11 2.3E-06 57.0 4.5 66 437-510 230-309 (484)
163 PF05172 Nup35_RRM: Nup53/35/4 92.8 0.19 4.1E-06 45.1 5.1 74 340-413 7-89 (100)
164 PF08952 DUF1866: Domain of un 92.8 0.35 7.7E-06 46.2 7.0 58 454-526 52-109 (146)
165 KOG2202|consensus 91.4 0.12 2.5E-06 53.4 2.2 67 453-527 83-151 (260)
166 KOG2202|consensus 91.0 0.12 2.7E-06 53.2 2.0 66 353-418 83-150 (260)
167 PF10309 DUF2414: Protein of u 90.8 0.97 2.1E-05 37.2 6.6 48 344-397 13-60 (62)
168 KOG4660|consensus 90.7 0.3 6.4E-06 55.1 4.8 68 325-409 75-143 (549)
169 KOG0112|consensus 90.6 0.15 3.1E-06 60.3 2.3 114 437-608 371-485 (975)
170 KOG4849|consensus 90.5 13 0.00028 40.4 16.2 29 88-116 120-148 (498)
171 COG5175 MOT2 Transcriptional r 90.3 0.77 1.7E-05 49.1 7.0 80 328-414 117-201 (480)
172 PF08952 DUF1866: Domain of un 90.1 0.84 1.8E-05 43.7 6.5 57 352-415 50-106 (146)
173 PF08777 RRM_3: RNA binding mo 90.1 0.28 6.1E-06 44.2 3.2 66 344-413 6-77 (105)
174 PF14605 Nup35_RRM_2: Nup53/35 89.7 0.6 1.3E-05 36.9 4.5 49 343-396 5-53 (53)
175 KOG4676|consensus 88.8 0.66 1.4E-05 50.5 5.3 159 439-607 8-180 (479)
176 KOG4676|consensus 88.2 0.33 7.1E-06 52.8 2.6 161 341-512 9-214 (479)
177 KOG4285|consensus 87.6 1.3 2.8E-05 46.9 6.4 76 439-528 198-274 (350)
178 KOG1996|consensus 86.8 1.3 2.9E-05 46.6 6.0 63 350-412 297-363 (378)
179 KOG0151|consensus 86.5 0.93 2E-05 52.6 5.1 71 343-413 178-254 (877)
180 KOG1996|consensus 86.2 1.7 3.7E-05 45.8 6.4 61 452-520 300-363 (378)
181 KOG2193|consensus 84.8 1.2 2.6E-05 49.0 4.7 69 440-521 3-73 (584)
182 PF08675 RNA_bind: RNA binding 84.6 2.8 6E-05 36.7 5.9 53 438-506 9-61 (87)
183 PF07292 NID: Nmi/IFP 35 domai 84.6 1.7 3.7E-05 38.3 4.7 70 382-460 1-74 (88)
184 KOG4285|consensus 83.2 5.3 0.00011 42.5 8.4 70 341-418 199-272 (350)
185 KOG2591|consensus 81.3 4.8 0.0001 45.9 7.7 69 438-518 175-246 (684)
186 PF14111 DUF4283: Domain of un 79.1 2.4 5.3E-05 39.5 4.0 102 346-463 28-130 (153)
187 PF11767 SET_assoc: Histone ly 77.7 10 0.00022 31.7 6.8 53 449-517 11-64 (66)
188 KOG1855|consensus 77.4 2.3 4.9E-05 47.0 3.6 62 340-401 232-308 (484)
189 KOG2193|consensus 77.3 0.53 1.2E-05 51.6 -1.1 122 378-528 36-161 (584)
190 KOG3671|consensus 72.4 1.2E+02 0.0027 34.6 15.4 13 345-357 491-503 (569)
191 KOG3895|consensus 72.1 47 0.001 36.4 11.6 92 211-309 379-470 (488)
192 PHA03378 EBNA-3B; Provisional 70.6 27 0.00059 41.0 10.0 12 260-271 772-783 (991)
193 KOG1985|consensus 69.9 46 0.00099 40.0 11.9 20 438-457 295-314 (887)
194 KOG0115|consensus 67.2 4.9 0.00011 41.8 3.1 46 350-398 46-91 (275)
195 KOG2068|consensus 66.9 2.1 4.5E-05 46.0 0.4 77 439-523 78-162 (327)
196 PF03467 Smg4_UPF3: Smg-4/UPF3 65.0 6.9 0.00015 38.5 3.6 70 437-511 6-80 (176)
197 KOG0260|consensus 63.7 1.3E+02 0.0028 38.0 14.1 10 61-70 1374-1383(1605)
198 KOG2135|consensus 63.6 4.2 9.1E-05 45.5 2.0 72 439-523 373-445 (526)
199 PF07292 NID: Nmi/IFP 35 domai 61.7 12 0.00026 33.0 4.1 70 490-598 1-72 (88)
200 KOG2253|consensus 61.5 2.8 6.1E-05 48.5 0.2 115 381-504 75-193 (668)
201 PF03468 XS: XS domain; Inter 60.9 9.6 0.00021 35.1 3.5 50 451-510 30-80 (116)
202 PF11767 SET_assoc: Histone ly 59.5 33 0.00071 28.6 6.1 55 341-406 6-61 (66)
203 KOG2416|consensus 59.0 19 0.00041 41.6 6.0 85 436-532 442-530 (718)
204 KOG1923|consensus 58.4 22 0.00047 42.3 6.5 17 345-361 399-415 (830)
205 PF04847 Calcipressin: Calcipr 57.1 30 0.00065 34.5 6.5 59 451-522 8-69 (184)
206 PF03880 DbpA: DbpA RNA bindin 56.8 38 0.00083 28.3 6.2 61 449-521 12-74 (74)
207 KOG2591|consensus 56.8 6.8 0.00015 44.7 2.1 67 336-408 172-244 (684)
208 KOG1923|consensus 54.6 50 0.0011 39.4 8.6 12 65-76 164-175 (830)
209 PF07576 BRAP2: BRCA1-associat 53.3 89 0.0019 28.6 8.4 68 438-513 13-81 (110)
210 cd06398 PB1_Joka2 The PB1 doma 52.3 62 0.0013 28.6 7.0 62 346-411 24-85 (91)
211 KOG2391|consensus 51.8 58 0.0013 35.4 7.9 43 216-260 126-169 (365)
212 KOG3837|consensus 51.0 2.7E+02 0.0058 31.4 12.9 9 133-141 39-47 (523)
213 PHA03378 EBNA-3B; Provisional 47.3 2E+02 0.0044 34.2 11.7 7 137-143 665-671 (991)
214 PF09849 DUF2076: Uncharacteri 44.8 1.8E+02 0.0038 30.5 10.1 28 192-219 46-73 (247)
215 PF08675 RNA_bind: RNA binding 41.9 33 0.00072 30.2 3.6 31 577-608 8-38 (87)
216 PF15023 DUF4523: Protein of u 40.0 75 0.0016 30.8 5.9 68 437-518 85-156 (166)
217 PF03276 Gag_spuma: Spumavirus 39.2 1.5E+02 0.0033 34.2 9.1 16 60-75 136-151 (582)
218 PRK14548 50S ribosomal protein 37.9 73 0.0016 27.8 5.1 52 446-505 28-79 (84)
219 PF07576 BRAP2: BRCA1-associat 37.4 1.3E+02 0.0029 27.5 7.0 58 346-404 20-80 (110)
220 PF04847 Calcipressin: Calcipr 37.3 79 0.0017 31.5 5.9 59 349-415 9-70 (184)
221 TIGR03636 L23_arch archaeal ri 35.5 81 0.0018 27.1 5.0 55 442-504 17-71 (77)
222 PF15023 DUF4523: Protein of u 34.4 1.2E+02 0.0025 29.5 6.2 56 350-411 102-157 (166)
223 KOG2135|consensus 34.3 23 0.00049 40.0 1.7 58 350-415 388-445 (526)
224 KOG0804|consensus 33.9 1.1E+02 0.0025 34.5 7.0 68 438-513 74-142 (493)
225 KOG2068|consensus 33.2 21 0.00046 38.5 1.3 63 352-414 91-161 (327)
226 PF15513 DUF4651: Domain of un 32.0 33 0.00073 28.4 2.0 17 592-608 8-24 (62)
227 PF03468 XS: XS domain; Inter 30.9 35 0.00075 31.5 2.1 51 347-402 29-80 (116)
228 PF02464 CinA: Competence-dama 30.1 78 0.0017 30.4 4.5 62 10-72 92-153 (154)
229 cd04908 ACT_Bt0572_1 N-termina 28.5 2.6E+02 0.0055 22.2 6.7 49 452-510 15-63 (66)
230 KOG4483|consensus 27.8 1.2E+02 0.0025 33.9 5.7 67 437-521 390-456 (528)
231 KOG1830|consensus 27.5 3.8E+02 0.0082 30.3 9.5 21 251-271 335-355 (518)
232 PF02714 DUF221: Domain of unk 27.4 92 0.002 32.8 5.0 17 382-398 1-17 (325)
233 PF03880 DbpA: DbpA RNA bindin 27.0 2.1E+02 0.0047 23.7 6.1 59 346-412 12-73 (74)
234 KOG2253|consensus 26.5 43 0.00094 39.2 2.3 68 435-518 37-105 (668)
235 KOG1925|consensus 24.5 7.8E+02 0.017 28.6 11.3 19 275-293 255-273 (817)
236 PF14111 DUF4283: Domain of un 24.3 15 0.00032 34.1 -1.5 80 487-608 55-135 (153)
237 PF14026 DUF4242: Protein of u 24.3 4E+02 0.0087 22.6 7.3 69 440-512 2-72 (77)
238 KOG0905|consensus 24.0 1.1E+02 0.0024 38.5 5.2 53 223-282 119-174 (1639)
239 KOG3671|consensus 23.4 5.3E+02 0.011 29.8 9.8 16 55-70 118-133 (569)
240 PF08503 DapH_N: Tetrahydrodip 22.3 2.6E+02 0.0057 24.5 5.8 31 489-519 42-72 (83)
241 KOG0307|consensus 22.3 1.3E+03 0.027 29.3 13.4 7 352-358 951-957 (1049)
242 PHA01732 proline-rich protein 22.2 1.2E+02 0.0026 26.8 3.6 31 232-274 6-36 (94)
243 KOG3424|consensus 22.1 1.4E+02 0.0031 27.9 4.3 46 345-393 33-83 (132)
244 PRK10263 DNA translocase FtsK; 21.7 5.7E+02 0.012 33.1 10.6 17 352-368 894-910 (1355)
245 PF02714 DUF221: Domain of unk 21.1 68 0.0015 33.9 2.5 31 490-521 1-31 (325)
246 KOG4410|consensus 21.0 1.1E+02 0.0023 32.8 3.7 48 438-497 330-377 (396)
247 KOG0917|consensus 20.3 5.2E+02 0.011 27.7 8.5 13 299-311 266-278 (338)
No 1
>KOG1365|consensus
Probab=100.00 E-value=5e-36 Score=310.13 Aligned_cols=173 Identities=36% Similarity=0.495 Sum_probs=134.0
Q ss_pred Ccc---ccc-hhhcHHHHHHHhhhhhcCcccceEEEEEccCCCCcccceEEecCHHHHHHHHHHHhhccccccCcceEEE
Q psy16116 52 EPI---QGF-KKVLVEHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKKQRYIE 127 (612)
Q Consensus 52 ~~~---~~~-~~~~~~~il~f~~~~~~~~~~~gvhmv~n~qg~~sg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ry~~ 127 (612)
++| +|| ++|+|||||+|||||+.+|++||||||||.||||||||||||+|+++|..||++|||++| |.||||
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~m----k~RYiE 355 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLM----KSRYIE 355 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhc----ccceEE
Confidence 666 888 599999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EeecCccccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCccCCCCCCCCCChhhhhHHHHHHHHHHHHHHH
Q psy16116 128 VFQCSGEDMNLVLNGVLPPTSPAISPVGKTLLSPGMLPHSSQPLYPQHNTQINPGLSHLDPLVNVHLTQALAQAQYAKSQ 207 (612)
Q Consensus 128 ~f~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~m~p~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (612)
||+||+||||.||+|+.-.++ ..+| +||-||+-... +++..+|. --|
T Consensus 356 vfp~S~eeln~vL~~g~~g~~-~q~P------PP~plp~~g~t----p~qAtpP~-~~w--------------------- 402 (508)
T KOG1365|consen 356 VFPCSVEELNEVLSGGLVGQQ-HQVP------PPAPLPFMGQT----PPQATPPQ-QFW--------------------- 402 (508)
T ss_pred EeeccHHHHHHHHhcCccccc-CCCC------CCCCccccCcC----CCCCCCcc-ccc---------------------
Confidence 999999999999999875555 4444 45666654311 11111111 001
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy16116 208 QDNLMLMNQIAAQQMAALNKPHNMALNGHTPTLIPAPSPNALMPPPLNSKSTTIPTNLPALPAVPTSGGYFPQFQL 283 (612)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~p~~~~~~~~~~~~~~~p~~p~~~~~~p~~~~ 283 (612)
.+.+++ -+|...-++.|.+++|-+..+..+..+.+-+.|+..++..++-+.+++
T Consensus 403 -----------------~YPSpp-----isP~vPga~tp~a~Yp~~~~~~~p~~~an~~~P~~s~~~V~f~~~Pt~ 456 (508)
T KOG1365|consen 403 -----------------SYPSPP-----ISPIVPGAVTPLAIYPIHMSIGVPELVANFTTPEHSVDNVLFTRWPTH 456 (508)
T ss_pred -----------------cCCCCC-----CCCCCCCCcCceeeeccccccCccccccCCCCCCCccceeeeecCccc
Confidence 122222 233334677788899999998888888888888887777777665444
No 2
>KOG4211|consensus
Probab=100.00 E-value=7.7e-34 Score=302.56 Aligned_cols=263 Identities=30% Similarity=0.474 Sum_probs=212.0
Q ss_pred cccch-hhcHHHHHHHhhhhhcCcccceEEEEEccC-CCCcccceEEecCHHHHHHHHHHHhhccccccCcceEEEEeec
Q psy16116 54 IQGFK-KVLVEHILEFLGEFASNIVYQGVHMVYNSQ-GQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKKQRYIEVFQC 131 (612)
Q Consensus 54 ~~~~~-~~~~~~il~f~~~~~~~~~~~gvhmv~n~q-g~~sg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ry~~~f~~ 131 (612)
||||. +|+.+|||+||++|+.+- ++|+.. |||||||||.|.|++.+..|. ++|+..| ++||||||.-
T Consensus 15 ~rGLPwsat~~ei~~Ff~~~~I~~------~~~~r~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~m----g~RYIEVf~~ 83 (510)
T KOG4211|consen 15 LRGLPWSATEKEILDFFSNCGIEN------LEIPRRNGRPSGEAYVEFTSEEDVEKAL-KKDRESM----GHRYIEVFTA 83 (510)
T ss_pred ecCCCccccHHHHHHHHhcCceeE------EEEeccCCCcCcceEEEeechHHHHHHH-HhhHHHh----CCceEEEEcc
Confidence 89997 999999999999998876 899998 999999999999999999985 9999999 9999999999
Q ss_pred CccccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCccCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHH
Q psy16116 132 SGEDMNLVLNGVLPPTSPAISPVGKTLLSPGMLPHSSQPLYPQHNTQINPGLSHLDPLVNVHLTQALAQAQYAKSQQDNL 211 (612)
Q Consensus 132 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~m~p~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (612)
.++||.|++....| .+
T Consensus 84 ~~~e~d~~~~~~g~-~s--------------------------------------------------------------- 99 (510)
T KOG4211|consen 84 GGAEADWVMRPGGP-NS--------------------------------------------------------------- 99 (510)
T ss_pred CCccccccccCCCC-CC---------------------------------------------------------------
Confidence 99999998763211 00
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCccc
Q psy16116 212 MLMNQIAAQQMAALNKPHNMALNGHTPTLIPAPSPNALMPPPLNSKSTTIPTNLPALPAVPTSGGYFPQFQLPINMNTAH 291 (612)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~p~~~~~~~~~~~~~~~p~~p~~~~~~p~~~~~~~~~~~~ 291 (612)
. .
T Consensus 100 ---------------------------------------------------------------~----~----------- 101 (510)
T KOG4211|consen 100 ---------------------------------------------------------------S----A----------- 101 (510)
T ss_pred ---------------------------------------------------------------C----C-----------
Confidence 0 0
Q ss_pred ccCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCcEeecCCCCCCCcccceecCCCHHHHHhhHhhcccc--cCeeeEE
Q psy16116 292 LLQPMNTPFFFNMPRMPVTPQVLPKFPVHQLNQTPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQV--LGLGGVA 369 (612)
Q Consensus 292 ~~~~~~~p~~~~~P~~p~~~~~~pk~~~~~~~~~~tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~--~~v~~V~ 369 (612)
. . +|.| +++|||.+++++|.+||.. +..+.|.
T Consensus 102 -------------------------~-------d---~vVR-----------LRGLPfscte~dI~~FFaGL~Iv~~gi~ 135 (510)
T KOG4211|consen 102 -------------------------N-------D---GVVR-----------LRGLPFSCTEEDIVEFFAGLEIVPDGIL 135 (510)
T ss_pred -------------------------C-------C---ceEE-----------ecCCCccCcHHHHHHHhcCCccccccee
Confidence 0 0 1112 5666666666666666665 3455688
Q ss_pred EeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchhhccCCC---------------Cc-------
Q psy16116 370 LCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN---------------NN------- 427 (612)
Q Consensus 370 ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~~~~g~~---------------~~------- 427 (612)
++++..||+.|.|||.|+|.|.|++||.+|++.|+.|+|+|++++.+++.+..+.. ..
T Consensus 136 l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~ 215 (510)
T KOG4211|consen 136 LPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQ 215 (510)
T ss_pred eeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCcccccccc
Confidence 89999999999999999999999999999999999999999999877654322000 00
Q ss_pred ---------c-----------------------------h--hhhcc---------------CCcccEEEEeCCCCCCCH
Q psy16116 428 ---------E-----------------------------A--QAFLT---------------RGAQVIIRMRGLPYECTA 452 (612)
Q Consensus 428 ---------e-----------------------------~--~~~~~---------------~~~~~~VfV~nLP~s~te 452 (612)
. + ..... .....++++|+|||.+++
T Consensus 216 ~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~ 295 (510)
T KOG4211|consen 216 GRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATE 295 (510)
T ss_pred ccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCC
Confidence 0 0 00000 012388999999999999
Q ss_pred HHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEEEecchH
Q psy16116 453 KQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTA 524 (612)
Q Consensus 453 ~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV~~as~~ 524 (612)
.||.+||+.+. .-+|+|-..++||.+|.|+|+|.+.|||..|+.+++..|++|+|+.+.....
T Consensus 296 ~di~nfFspl~---------p~~v~i~ig~dGr~TGEAdveF~t~edav~Amskd~anm~hrYVElFln~~~ 358 (510)
T KOG4211|consen 296 NDIANFFSPLN---------PYRVHIEIGPDGRATGEADVEFATGEDAVGAMGKDGANMGHRYVELFLNGAP 358 (510)
T ss_pred cchhhhcCCCC---------ceeEEEEeCCCCccCCcceeecccchhhHhhhccCCcccCcceeeecccCCc
Confidence 99999999875 2368898899999999999999999999999999999999999999987543
No 3
>KOG4211|consensus
Probab=100.00 E-value=2.4e-32 Score=291.16 Aligned_cols=263 Identities=29% Similarity=0.463 Sum_probs=185.8
Q ss_pred CCCCcEeecCCCCCCCcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCc
Q psy16116 323 NQTPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHH 402 (612)
Q Consensus 323 ~~~~tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~ 402 (612)
++..+.|++++.++||+ .+.+++.+||.+|. |.++.+.+ .+||.+|.|||+|+++||+++||++++..
T Consensus 5 ~e~~~~~~vr~rGLPws-------at~~ei~~Ff~~~~----I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~AlkkdR~~ 72 (510)
T KOG4211|consen 5 NEGSTAFEVRLRGLPWS-------ATEKEILDFFSNCG----IENLEIPR-RNGRPSGEAYVEFTSEEDVEKALKKDRES 72 (510)
T ss_pred cCCCcceEEEecCCCcc-------ccHHHHHHHHhcCc----eeEEEEec-cCCCcCcceEEEeechHHHHHHHHhhHHH
Confidence 45667777775555544 33366666666655 55644433 36999999999999999999999999999
Q ss_pred cCceEEEEeccCccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC
Q psy16116 403 IDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP 482 (612)
Q Consensus 403 IggR~IeV~~s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~ 482 (612)
|++|+|+|+.+..+++.+.+....... .....+|++|||||+||++||.+||+.+. |+ .+.|.+++|.
T Consensus 73 mg~RYIEVf~~~~~e~d~~~~~~g~~s-----~~~d~vVRLRGLPfscte~dI~~FFaGL~-----Iv--~~gi~l~~d~ 140 (510)
T KOG4211|consen 73 MGHRYIEVFTAGGAEADWVMRPGGPNS-----SANDGVVRLRGLPFSCTEEDIVEFFAGLE-----IV--PDGILLPMDQ 140 (510)
T ss_pred hCCceEEEEccCCccccccccCCCCCC-----CCCCceEEecCCCccCcHHHHHHHhcCCc-----cc--ccceeeeccC
Confidence 999999999998877655433222111 13457899999999999999999999886 43 3478899999
Q ss_pred CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEEEecchHHHHHHhhhh---cCCCCCCCCCCCCCCC-------C--
Q psy16116 483 DGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKT---MELPKNNSLTSSNNGL-------S-- 550 (612)
Q Consensus 483 ~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV~~as~~e~~~~~~~~---~~~~~~~~~~~e~~~~-------s-- 550 (612)
.||++|.|||.|++.|.|++||.+|++.|++|+|||++++..|+..+...- ..++.+++++...++. .
T Consensus 141 rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~ 220 (510)
T KOG4211|consen 141 RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPG 220 (510)
T ss_pred CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCC
Confidence 999999999999999999999999999999999999999999998876321 1123333332111110 0
Q ss_pred --C------cccc-------------------cccccCCCC----CCCCccccc-C-CCcccEEEEcCCCccCCHHHHHH
Q psy16116 551 --A------QQPM-------------------LSHLAQVPV----PYLPQHIIT-S-GTRKDCIRLRGLPYEALCILMDI 597 (612)
Q Consensus 551 --~------~~~~-------------------~~~~s~~p~----~~~~~~~~~-~-~~~~~~VfVrNLPf~vTeeDLke 597 (612)
. .+.+ ..+.-..+. ......... . .....++++|+|||++++.||.+
T Consensus 221 ~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~n 300 (510)
T KOG4211|consen 221 RNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIAN 300 (510)
T ss_pred ccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhh
Confidence 0 0000 000000000 011111111 1 22338999999999999999999
Q ss_pred hhccCCcEeEee
Q psy16116 598 FFVGQQDSFVHK 609 (612)
Q Consensus 598 fFs~~gdI~~~k 609 (612)
||+.+..+.++.
T Consensus 301 fFspl~p~~v~i 312 (510)
T KOG4211|consen 301 FFSPLNPYRVHI 312 (510)
T ss_pred hcCCCCceeEEE
Confidence 999998887765
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=7.5e-29 Score=261.63 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=129.3
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED 417 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e 417 (612)
+++|+|||++.++++|+++|.. +.+.+|+|++++ +|+++|||||+|.+.+||++||+ +++..|+|+.|.|..+....
T Consensus 5 ~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~ 84 (352)
T TIGR01661 5 NLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSS 84 (352)
T ss_pred EEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccc
Confidence 4556777776666666666654 458999999986 58999999999999999999996 89999999999997654321
Q ss_pred hhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCC
Q psy16116 418 FINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEK 496 (612)
Q Consensus 418 ~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s 496 (612)
- .....+|||+|||+++++++|+++|+.|| .+..++++.+. +|.++|||||+|.+
T Consensus 85 ~----------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G--------~i~~~~~~~~~~~~~~~g~~fv~f~~ 140 (352)
T TIGR01661 85 D----------------SIKGANLYVSGLPKTMTQHELESIFSPFG--------QIITSRILSDNVTGLSKGVGFIRFDK 140 (352)
T ss_pred c----------------ccccceEEECCccccCCHHHHHHHHhccC--------CEEEEEEEecCCCCCcCcEEEEEECC
Confidence 0 01234699999999999999999999999 44568888776 78999999999999
Q ss_pred HHHHHHHHH-hCCcccCC--EEEEEEecc
Q psy16116 497 EEEADKALS-KHKESIGI--RYIELFRST 522 (612)
Q Consensus 497 ~edA~kAL~-~~~~~igg--R~IeV~~as 522 (612)
.++|++||+ +|+..+.| +.|.|..+.
T Consensus 141 ~~~A~~ai~~l~g~~~~g~~~~i~v~~a~ 169 (352)
T TIGR01661 141 RDEADRAIKTLNGTTPSGCTEPITVKFAN 169 (352)
T ss_pred HHHHHHHHHHhCCCccCCCceeEEEEECC
Confidence 999999996 79988877 668888774
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1.5e-27 Score=268.20 Aligned_cols=209 Identities=16% Similarity=0.194 Sum_probs=159.7
Q ss_pred HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhhccCCCCcc
Q psy16116 350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFINVAGGNNNE 428 (612)
Q Consensus 350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~~~g~~~~e 428 (612)
++++++|+.|+ .+.+|+++.+.+|+++|||||+|++.|+|++|++ +++..++++.|.|.......... ..
T Consensus 103 ~~L~~~F~~~G---~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~---~~--- 173 (562)
T TIGR01628 103 KALFDTFSKFG---NILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHERE---AA--- 173 (562)
T ss_pred HHHHHHHHhcC---CcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccc---cc---
Confidence 55666666555 4778999999999999999999999999999996 78999999999885443221110 00
Q ss_pred hhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hC
Q psy16116 429 AQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KH 507 (612)
Q Consensus 429 ~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~ 507 (612)
......+|||+|||+++|+++|+++|+.|| .+.++.++.+.+|+++|||||+|.+.++|.+|++ ++
T Consensus 174 -----~~~~~~~l~V~nl~~~~tee~L~~~F~~fG--------~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~ 240 (562)
T TIGR01628 174 -----PLKKFTNLYVKNLDPSVNEDKLRELFAKFG--------EITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMN 240 (562)
T ss_pred -----cccCCCeEEEeCCCCcCCHHHHHHHHHhcC--------CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 011235699999999999999999999999 4567999999999999999999999999999996 79
Q ss_pred CcccC----CEEEEEEecchHHHHH-HhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEE
Q psy16116 508 KESIG----IRYIELFRSTTAEVQQ-VLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIR 582 (612)
Q Consensus 508 ~~~ig----gR~IeV~~as~~e~~~-~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~Vf 582 (612)
+..++ |+.+.|..+..+.... ...+... . ... +. .......+||
T Consensus 241 g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~-~----~~~------------------------~~--~~~~~~~~l~ 289 (562)
T TIGR01628 241 GKKIGLAKEGKKLYVGRAQKRAEREAELRRKFE-E----LQQ------------------------ER--KMKAQGVNLY 289 (562)
T ss_pred CcEecccccceeeEeecccChhhhHHHHHhhHH-h----hhh------------------------hh--hcccCCCEEE
Confidence 99999 9999998875443221 1111100 0 000 00 0012456899
Q ss_pred EcCCCccCCHHHHHHhhccCCcEeEeeCC
Q psy16116 583 LRGLPYEALCILMDIFFVGQQDSFVHKVP 611 (612)
Q Consensus 583 VrNLPf~vTeeDLkefFs~~gdI~~~kip 611 (612)
|+|||+++|+++|+++|+.||.|..++|.
T Consensus 290 V~nl~~~~~~~~L~~~F~~~G~i~~~~i~ 318 (562)
T TIGR01628 290 VKNLDDTVTDEKLRELFSECGEITSAKVM 318 (562)
T ss_pred EeCCCCccCHHHHHHHHHhcCCeEEEEEE
Confidence 99999999999999999999999888764
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=2.7e-28 Score=274.12 Aligned_cols=206 Identities=16% Similarity=0.113 Sum_probs=164.0
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED 417 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e 417 (612)
+++|+||+.+.+|++|+++|.. +.+.+|+|++|.. |+++|||||+|.+.+||++||+ +++..|+|+.|+|.++.++.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 3567777777766666666654 4589999999875 8999999999999999999996 67788999999998775432
Q ss_pred hhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCH
Q psy16116 418 FINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKE 497 (612)
Q Consensus 418 ~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~ 497 (612)
..+ +....+|||+|||+++++++|+++|+.|| .+.+|+|+.|.+|+++|||||+|.+.
T Consensus 82 ~~~--------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G--------~i~~~~i~~~~~g~skg~afV~F~~~ 139 (562)
T TIGR01628 82 SLR--------------RSGVGNIFVKNLDKSVDNKALFDTFSKFG--------NILSCKVATDENGKSRGYGFVHFEKE 139 (562)
T ss_pred ccc--------------ccCCCceEEcCCCccCCHHHHHHHHHhcC--------CcceeEeeecCCCCcccEEEEEECCH
Confidence 111 11234699999999999999999999999 34569999999999999999999999
Q ss_pred HHHHHHHH-hCCcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCC
Q psy16116 498 EEADKALS-KHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGT 576 (612)
Q Consensus 498 edA~kAL~-~~~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~ 576 (612)
++|++|++ +|+..++++.|.|.....+. . +.. ....
T Consensus 140 e~A~~Ai~~lng~~~~~~~i~v~~~~~~~--------~-------~~~----------------------------~~~~ 176 (562)
T TIGR01628 140 ESAKAAIQKVNGMLLNDKEVYVGRFIKKH--------E-------REA----------------------------APLK 176 (562)
T ss_pred HHHHHHHHHhcccEecCceEEEecccccc--------c-------ccc----------------------------cccc
Confidence 99999996 69999999999885432110 0 000 0012
Q ss_pred cccEEEEcCCCccCCHHHHHHhhccCCcEeEeeCC
Q psy16116 577 RKDCIRLRGLPYEALCILMDIFFVGQQDSFVHKVP 611 (612)
Q Consensus 577 ~~~~VfVrNLPf~vTeeDLkefFs~~gdI~~~kip 611 (612)
..++|||+|||+++|+++|+++|+.||.|..+++.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~ 211 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVM 211 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEE
Confidence 34689999999999999999999999998877664
No 7
>KOG1365|consensus
Probab=99.95 E-value=3.1e-28 Score=252.51 Aligned_cols=237 Identities=54% Similarity=0.859 Sum_probs=189.5
Q ss_pred CHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchhhccCCCCc
Q psy16116 348 WLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNN 427 (612)
Q Consensus 348 p~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~~~~g~~~~ 427 (612)
+..++..||+.... ....+.+..+..||+.|+|.|.|.|.|.-+.||+++++.+++|+|+|++++.+++....++.+.
T Consensus 73 Sd~~ia~ff~gl~i--a~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f~~iagg~s~ 150 (508)
T KOG1365|consen 73 SDQDIARFFKGLNI--ANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEFLKIAGGTSN 150 (508)
T ss_pred ccCCHHHHHhhhhc--cccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhheEecCCccc
Confidence 33456666665543 3446777788899999999999999999999999999999999999999999999888888877
Q ss_pred chhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhC
Q psy16116 428 EAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKH 507 (612)
Q Consensus 428 e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~ 507 (612)
+...|.+++....|++|||||++++.|+.+||.. +|.|.+..++|.++...+||.+|.|||.|+.+++|+.||.+|
T Consensus 151 e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~----~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~kh 226 (508)
T KOG1365|consen 151 EAAPFLSKENQVIVRMRGLPFDATALDVVEFFGP----PCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKH 226 (508)
T ss_pred cCCCCCCcccceEEEecCCCCCcchHHHHHhcCC----CCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHH
Confidence 7777877778889999999999999999999973 445555678899999999999999999999999999999999
Q ss_pred CcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCC
Q psy16116 508 KESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLP 587 (612)
Q Consensus 508 ~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLP 587 (612)
++.||.||||+++++..|+.+.+++....+-.....+. ..+ ..|....+. ...+.||.+||||
T Consensus 227 rq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp------~~p------~~p~~~~p~-----~~~kdcvRLRGLP 289 (508)
T KOG1365|consen 227 RQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSP------LLP------GGPARLVPP-----TRSKDCVRLRGLP 289 (508)
T ss_pred HHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCC------CCC------CCccccCCC-----CCCCCeeEecCCC
Confidence 99999999999999999999999876522211110000 000 001101111 1247899999999
Q ss_pred ccCCHHHHHHhhccC-CcEeE
Q psy16116 588 YEALCILMDIFFVGQ-QDSFV 607 (612)
Q Consensus 588 f~vTeeDLkefFs~~-gdI~~ 607 (612)
|++|.|||-.||.+| .+|..
T Consensus 290 y~AtvEdIL~FlgdFa~~i~f 310 (508)
T KOG1365|consen 290 YEATVEDILDFLGDFATDIRF 310 (508)
T ss_pred hhhhHHHHHHHHHHHhhhccc
Confidence 999999999999998 45544
No 8
>KOG0127|consensus
Probab=99.94 E-value=1.8e-26 Score=247.97 Aligned_cols=177 Identities=21% Similarity=0.263 Sum_probs=133.4
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED 417 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e 417 (612)
++||++||++.+.+.+.+||.. +++....++.++. +.+||||||+|+-.||++.||+ ..+..++||.|.|..+..+.
T Consensus 7 TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~ 86 (678)
T KOG0127|consen 7 TLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRA 86 (678)
T ss_pred eEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccc
Confidence 4556666766666666655553 4577777777764 5889999999999999999997 67788999999997765532
Q ss_pred hhh-ccCCCC--cch---h-hhc-c--CCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCce
Q psy16116 418 FIN-VAGGNN--NEA---Q-AFL-T--RGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKAT 487 (612)
Q Consensus 418 ~~~-~~g~~~--~e~---~-~~~-~--~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~Grsk 487 (612)
..+ ...+.. .+. + ... . ....-.|.||||||+|.+.||+.+|+.|| .| ..|.|+...+|+-.
T Consensus 87 r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G----~V----~Ei~IP~k~dgklc 158 (678)
T KOG0127|consen 87 RSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFG----KV----VEIVIPRKKDGKLC 158 (678)
T ss_pred cchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcc----eE----EEEEcccCCCCCcc
Confidence 211 110000 000 0 000 0 12356799999999999999999999999 44 45999988899988
Q ss_pred eEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecchHH
Q psy16116 488 GDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTTAE 525 (612)
Q Consensus 488 G~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~~e 525 (612)
|||||.|....+|.+||+ +|+..|+||.|-|.++-.++
T Consensus 159 GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 159 GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 999999999999999997 69999999999999985544
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=6.4e-26 Score=253.82 Aligned_cols=199 Identities=18% Similarity=0.144 Sum_probs=147.6
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccC-ceEEEEeccCccch
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHID-KRYIEVTKANGEDF 418 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Ig-gR~IeV~~s~~~e~ 418 (612)
+||+|||.+..+++|+++|.. +.+.+|+|++|.+|+++|||||+|.+.|+|++||+ +|+..|. ++.|.|..+.
T Consensus 61 lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~---- 136 (578)
T TIGR01648 61 VFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV---- 136 (578)
T ss_pred EEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc----
Confidence 345555555555555555443 45889999999899999999999999999999997 6777664 6766664332
Q ss_pred hhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEe-eC-CCCCceeEEEEEeCC
Q psy16116 419 INVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFV-KK-PDGKATGDAFVLFEK 496 (612)
Q Consensus 419 ~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~-~d-~~GrskG~AFV~F~s 496 (612)
..++|||+|||+++++++|.+.|++++. .+..+.+. .. ..++++|||||+|++
T Consensus 137 ------------------~~~rLFVgNLP~~~TeeeL~eeFskv~e-------gvv~vIv~~~~~~kgKnRGFAFVeF~s 191 (578)
T TIGR01648 137 ------------------DNCRLFVGGIPKNKKREEILEEFSKVTE-------GVVDVIVYHSAADKKKNRGFAFVEYES 191 (578)
T ss_pred ------------------cCceeEeecCCcchhhHHHHHHhhcccC-------CceEEEEeccccccCccCceEEEEcCC
Confidence 1246999999999999999999999861 11223332 22 357899999999999
Q ss_pred HHHHHHHHH-hC--CcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCccccc
Q psy16116 497 EEEADKALS-KH--KESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIIT 573 (612)
Q Consensus 497 ~edA~kAL~-~~--~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~ 573 (612)
+++|.+|++ ++ +..+.||.|.|..+..++- .. .+
T Consensus 192 ~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~----------~d-----~~---------------------------- 228 (578)
T TIGR01648 192 HRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEE----------VD-----ED---------------------------- 228 (578)
T ss_pred HHHHHHHHHHhhccceEecCceEEEEeeccccc----------cc-----cc----------------------------
Confidence 999999996 33 3468899999987653210 00 00
Q ss_pred CCCcccEEEEcCCCccCCHHHHHHhhccC--CcEeEeeCCC
Q psy16116 574 SGTRKDCIRLRGLPYEALCILMDIFFVGQ--QDSFVHKVPK 612 (612)
Q Consensus 574 ~~~~~~~VfVrNLPf~vTeeDLkefFs~~--gdI~~~kip~ 612 (612)
......+|||+|||+++|+|+|+++|+.| ++|.-+++.|
T Consensus 229 ~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r 269 (578)
T TIGR01648 229 VMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR 269 (578)
T ss_pred ccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec
Confidence 00123589999999999999999999999 9998887653
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=4.3e-24 Score=233.66 Aligned_cols=170 Identities=20% Similarity=0.181 Sum_probs=134.2
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccch
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDF 418 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~ 418 (612)
+|+|+||+++.++++|+++|.. +.+.+|+|++++ +|+++|||||+|.+.++|++||.+++..+.|+.|.|..+..+..
T Consensus 91 ~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~ 170 (457)
T TIGR01622 91 TVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKN 170 (457)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhh
Confidence 4556666666666666665554 458999999986 48999999999999999999999999999999999976543321
Q ss_pred hhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCH
Q psy16116 419 INVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKE 497 (612)
Q Consensus 419 ~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~ 497 (612)
........... ......+|||+|||+++++++|+++|+.|| .+..|.|+.+. +|+++|||||+|.+.
T Consensus 171 ~~~~~~~~~~~----~~p~~~~l~v~nl~~~~te~~l~~~f~~~G--------~i~~v~~~~d~~~g~~~g~afV~f~~~ 238 (457)
T TIGR01622 171 RAAKAATHQPG----DIPNFLKLYVGNLHFNITEQELRQIFEPFG--------DIEDVQLHRDPETGRSKGFGFIQFHDA 238 (457)
T ss_pred hhhhcccccCC----CCCCCCEEEEcCCCCCCCHHHHHHHHHhcC--------CeEEEEEEEcCCCCccceEEEEEECCH
Confidence 11100000000 011257899999999999999999999999 45679999887 579999999999999
Q ss_pred HHHHHHHH-hCCcccCCEEEEEEecc
Q psy16116 498 EEADKALS-KHKESIGIRYIELFRST 522 (612)
Q Consensus 498 edA~kAL~-~~~~~iggR~IeV~~as 522 (612)
++|.+||+ +++..|+||.|.|..+.
T Consensus 239 e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 239 EEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred HHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 99999996 79999999999999964
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=1.6e-23 Score=231.88 Aligned_cols=246 Identities=15% Similarity=0.182 Sum_probs=158.0
Q ss_pred CCCCcEeecCCCCCCCcccceecCCCHHHHHhhHhhccccc---------CeeeEEEeeCCCCCCcceEEEEeCCHHHHH
Q psy16116 323 NQTPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVL---------GLGGVALCLSAFGRRNGEAIVRFIDQEHRD 393 (612)
Q Consensus 323 ~~~~tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~~---------~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~ 393 (612)
.+..+|||++|+.. ++.+++.++|.+|+... .+.++. .++.+|||||+|.+.|+|.
T Consensus 173 ~~~r~lyVgnLp~~----------~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~-----~~~~kg~afVeF~~~e~A~ 237 (509)
T TIGR01642 173 RQARRLYVGGIPPE----------FVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN-----INKEKNFAFLEFRTVEEAT 237 (509)
T ss_pred ccccEEEEeCCCCC----------CCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE-----ECCCCCEEEEEeCCHHHHh
Confidence 44566775554332 23366666666654321 122222 2467899999999999999
Q ss_pred HHHHhCCCccCceEEEEeccCccchhh-----ccCCCCc-chhhh-------ccCCcccEEEEeCCCCCCCHHHHHHHHh
Q psy16116 394 MALKRHKHHIDKRYIEVTKANGEDFIN-----VAGGNNN-EAQAF-------LTRGAQVIIRMRGLPYECTAKQVIDFFE 460 (612)
Q Consensus 394 kAL~~ng~~IggR~IeV~~s~~~e~~~-----~~g~~~~-e~~~~-------~~~~~~~~VfV~nLP~s~te~dLrefF~ 460 (612)
+||++++..+.|+.|.|.......-.. ....... ..... .......+|||+|||+.+++++|+++|+
T Consensus 238 ~Al~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~ 317 (509)
T TIGR01642 238 FAMALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLE 317 (509)
T ss_pred hhhcCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 999999999999999996543211000 0000000 00000 0112457899999999999999999999
Q ss_pred cCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecchHHHHHHhhhhcCCCC
Q psy16116 461 AGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTTAEVQQVLNKTMELPK 538 (612)
Q Consensus 461 ~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~~e~~~~~~~~~~~~~ 538 (612)
.|| .+..+.|+.+. +|+++|||||+|.+.++|.+||+ +++..|+|+.|.|..+....... . .
T Consensus 318 ~~G--------~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~----~---~- 381 (509)
T TIGR01642 318 SFG--------DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQA----T---I- 381 (509)
T ss_pred hcC--------CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCC----C---c-
Confidence 999 45678998886 79999999999999999999996 79999999999998875221000 0 0
Q ss_pred CCCCCCCCCCCCCcccccccccCCCCCCCCccc-ccCCCcccEEEEcCCCcc----------CCHHHHHHhhccCCcEeE
Q psy16116 539 NNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHI-ITSGTRKDCIRLRGLPYE----------ALCILMDIFFVGQQDSFV 607 (612)
Q Consensus 539 ~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~-~~~~~~~~~VfVrNLPf~----------vTeeDLkefFs~~gdI~~ 607 (612)
... ++.. .... ..... .+.. ........+|+|.||.+. ...+||+++|+.||.|..
T Consensus 382 --~~~---~~~~-~~~~--~~~~~-----~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~ 448 (509)
T TIGR01642 382 --DTS---NGMA-PVTL--LAKAL-----SQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLIN 448 (509)
T ss_pred --ccc---cccc-cccc--ccccc-----hhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeE
Confidence 000 0000 0000 00000 0000 011234578999999742 234789999999999999
Q ss_pred eeCCC
Q psy16116 608 HKVPK 612 (612)
Q Consensus 608 ~kip~ 612 (612)
++||+
T Consensus 449 v~i~~ 453 (509)
T TIGR01642 449 IVIPR 453 (509)
T ss_pred EEeec
Confidence 99874
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.91 E-value=5.7e-24 Score=226.53 Aligned_cols=163 Identities=17% Similarity=0.108 Sum_probs=132.5
Q ss_pred CcccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116 338 VALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 338 ~~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~ 414 (612)
...+|||+||+.+.++++|+++|.. +.|.+|+|++|+ +|+++|||||+|.++++|++||+ +++..+.++.|+|..+.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 3445556677776666666666654 458899998885 68999999999999999999996 89999999999997654
Q ss_pred ccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEE
Q psy16116 415 GEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVL 493 (612)
Q Consensus 415 ~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~ 493 (612)
.... .....+|||+|||++++|+||+++|++|| .+..++|+.|. +|+++|||||+
T Consensus 186 p~~~----------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG--------~V~~v~i~~d~~tg~~kG~aFV~ 241 (346)
T TIGR01659 186 PGGE----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYG--------QIVQKNILRDKLTGTPRGVAFVR 241 (346)
T ss_pred cccc----------------ccccceeEEeCCCCcccHHHHHHHHHhcC--------CEEEEEEeecCCCCccceEEEEE
Confidence 3210 01234699999999999999999999999 45678998887 89999999999
Q ss_pred eCCHHHHHHHHH-hCCcccCC--EEEEEEecchH
Q psy16116 494 FEKEEEADKALS-KHKESIGI--RYIELFRSTTA 524 (612)
Q Consensus 494 F~s~edA~kAL~-~~~~~igg--R~IeV~~as~~ 524 (612)
|.+.++|++||+ +|+..+.+ +.|.|..+...
T Consensus 242 F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 242 FNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred ECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 999999999997 69988765 78999887643
No 13
>KOG0117|consensus
Probab=99.91 E-value=8e-24 Score=223.68 Aligned_cols=200 Identities=19% Similarity=0.190 Sum_probs=160.7
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccC-ceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHID-KRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Ig-gR~IeV~~s~~~ 416 (612)
-|||+.||.+..|++|..+|+. +.+-+++|++|+ +|.+||||||+|.+.++|++|++ +|++.|. |+.|.|..+..
T Consensus 85 EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva- 163 (506)
T KOG0117|consen 85 EVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA- 163 (506)
T ss_pred eEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee-
Confidence 4568889988889999987765 669999999995 69999999999999999999997 7887775 78888865432
Q ss_pred chhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC--CCCceeEEEEEe
Q psy16116 417 DFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP--DGKATGDAFVLF 494 (612)
Q Consensus 417 e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~--~GrskG~AFV~F 494 (612)
.++|||+|+|.+.++++|++-|++.+- ++..|.|..++ ..|+||||||+|
T Consensus 164 ---------------------n~RLFiG~IPK~k~keeIlee~~kVte-------GVvdVivy~~p~dk~KNRGFaFveY 215 (506)
T KOG0117|consen 164 ---------------------NCRLFIGNIPKTKKKEEILEEMKKVTE-------GVVDVIVYPSPDDKTKNRGFAFVEY 215 (506)
T ss_pred ---------------------cceeEeccCCccccHHHHHHHHHhhCC-------CeeEEEEecCccccccccceEEEEe
Confidence 256999999999999999999999872 34457776654 578999999999
Q ss_pred CCHHHHHHHHHh---CCcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCccc
Q psy16116 495 EKEEEADKALSK---HKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHI 571 (612)
Q Consensus 495 ~s~edA~kAL~~---~~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~ 571 (612)
.|+..|..|-++ .+-.+.|..|.|.++.+++- + +.+ .+
T Consensus 216 e~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e----------~-------ded----------~m------------ 256 (506)
T KOG0117|consen 216 ESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEE----------P-------DED----------TM------------ 256 (506)
T ss_pred ecchhHHHHHhhccCCceeecCCcceeeccCcccC----------C-------Chh----------hh------------
Confidence 999999999863 44567788888887754320 1 000 01
Q ss_pred ccCCCcccEEEEcCCCccCCHHHHHHhhccCCcEeEeeCCC
Q psy16116 572 ITSGTRKDCIRLRGLPYEALCILMDIFFVGQQDSFVHKVPK 612 (612)
Q Consensus 572 ~~~~~~~~~VfVrNLPf~vTeeDLkefFs~~gdI~~~kip~ 612 (612)
..-..||||||+-++|+|.|+++|+.||.|.=+|.||
T Consensus 257 ----s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r 293 (506)
T KOG0117|consen 257 ----SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR 293 (506)
T ss_pred ----hheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc
Confidence 1235799999999999999999999999998888765
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.91 E-value=1.2e-23 Score=236.34 Aligned_cols=168 Identities=15% Similarity=0.158 Sum_probs=131.7
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccch
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDF 418 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~ 418 (612)
+||+||+++.++++|+++|.. +.+.+|+|+.|+ +|+++|||||+|.+.++|++|++ +|+..|+||.|+|.+......
T Consensus 110 LfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~ 189 (612)
T TIGR01645 110 VYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQ 189 (612)
T ss_pred EEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccc
Confidence 346666666666666665554 458899998886 68999999999999999999996 899999999999975432110
Q ss_pred hhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCH
Q psy16116 419 INVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKE 497 (612)
Q Consensus 419 ~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~ 497 (612)
...... ... .......+|||+|||+++++++|+++|+.|| .+.+++|..|. +|++||||||+|.+.
T Consensus 190 a~~~~~---~~~--~~~~~~~rLfVgnLp~~vteedLk~lFs~FG--------~I~svrl~~D~~tgksKGfGFVeFe~~ 256 (612)
T TIGR01645 190 AQPIID---MVQ--EEAKKFNRIYVASVHPDLSETDIKSVFEAFG--------EIVKCQLARAPTGRGHKGYGFIEYNNL 256 (612)
T ss_pred cccccc---ccc--ccccccceEEeecCCCCCCHHHHHHHHhhcC--------CeeEEEEEecCCCCCcCCeEEEEECCH
Confidence 000000 000 0112346799999999999999999999999 45679999987 578999999999999
Q ss_pred HHHHHHHH-hCCcccCCEEEEEEecc
Q psy16116 498 EEADKALS-KHKESIGIRYIELFRST 522 (612)
Q Consensus 498 edA~kAL~-~~~~~iggR~IeV~~as 522 (612)
++|.+||+ +|+..++||.|+|.++.
T Consensus 257 e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 257 QSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred HHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 99999996 79999999999998874
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=1.5e-22 Score=224.49 Aligned_cols=163 Identities=12% Similarity=0.047 Sum_probs=121.8
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH---hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK---RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~---~ng~~IggR~IeV~~s~~~ 416 (612)
.|+|+|||++.++++|+++|.. |.+.+|++++ ++|+|||+|++.|+|++|++ .++..|+||.|.|..+...
T Consensus 4 vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 4 VVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 4567777777777777766654 5588888874 46899999999999999997 3678899999999887654
Q ss_pred chhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCC
Q psy16116 417 DFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEK 496 (612)
Q Consensus 417 e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s 496 (612)
+..+..... ... .......+|+|+||++++|+++|+++|+.|| .+.+|.|..+. .+|+|||+|.+
T Consensus 79 ~~~~~~~~~-~~~---~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G--------~V~~v~i~~~~---~~~~afVef~~ 143 (481)
T TIGR01649 79 EIKRDGNSD-FDS---AGPNKVLRVIVENPMYPITLDVLYQIFNPYG--------KVLRIVTFTKN---NVFQALVEFES 143 (481)
T ss_pred ccccCCCCc-ccC---CCCCceEEEEEcCCCCCCCHHHHHHHHhccC--------CEEEEEEEecC---CceEEEEEECC
Confidence 322211000 000 0011235799999999999999999999999 45678877543 25899999999
Q ss_pred HHHHHHHHH-hCCcccCC--EEEEEEecch
Q psy16116 497 EEEADKALS-KHKESIGI--RYIELFRSTT 523 (612)
Q Consensus 497 ~edA~kAL~-~~~~~igg--R~IeV~~as~ 523 (612)
.++|.+|++ +|+..|.+ +.|+|..+..
T Consensus 144 ~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~ 173 (481)
T TIGR01649 144 VNSAQHAKAALNGADIYNGCCTLKIEYAKP 173 (481)
T ss_pred HHHHHHHHHHhcCCcccCCceEEEEEEecC
Confidence 999999996 89999854 5788877654
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=2.5e-22 Score=222.62 Aligned_cols=243 Identities=15% Similarity=0.125 Sum_probs=149.1
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCc--eEEEEeccCccc
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDK--RYIEVTKANGED 417 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Igg--R~IeV~~s~~~e 417 (612)
|+|.||++..++++|+++|.. +.+..|++.++. .+|+|||+|++.++|++|++ +|+..|.+ +.|+|..+....
T Consensus 99 v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 99 VIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred EEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 345555555555555544443 347888876643 24799999999999999996 89998854 467765543211
Q ss_pred h----------h--h--ccCCCC--c--------c--------------------------------------hh-----
Q psy16116 418 F----------I--N--VAGGNN--N--------E--------------------------------------AQ----- 430 (612)
Q Consensus 418 ~----------~--~--~~g~~~--~--------e--------------------------------------~~----- 430 (612)
. . . ..+... . . ..
T Consensus 176 l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (481)
T TIGR01649 176 LNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAY 255 (481)
T ss_pred ceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccc
Confidence 0 0 0 000000 0 0 00
Q ss_pred ----------hh--ccCCcccEEEEeCCCC-CCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCH
Q psy16116 431 ----------AF--LTRGAQVIIRMRGLPY-ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKE 497 (612)
Q Consensus 431 ----------~~--~~~~~~~~VfV~nLP~-s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~ 497 (612)
.. .....+.+|||+|||+ .+++++|+++|+.|| .+.+|+|+.+ ++|||||+|.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG--------~V~~vki~~~----~~g~afV~f~~~ 323 (481)
T TIGR01649 256 EAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYG--------NVERVKFMKN----KKETALIEMADP 323 (481)
T ss_pred cccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcC--------CeEEEEEEeC----CCCEEEEEECCH
Confidence 00 0012457999999998 699999999999999 4567999876 369999999999
Q ss_pred HHHHHHHH-hCCcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCC
Q psy16116 498 EEADKALS-KHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGT 576 (612)
Q Consensus 498 edA~kAL~-~~~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~ 576 (612)
++|++||+ +|+..|+||.|+|..+..+..... +.. .... ..... ...+. ....+..... ......-..
T Consensus 324 ~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~--~~~-~~~~-~~~~~-~d~~~-----~~~~r~~~~~-~~~~~~~~~ 392 (481)
T TIGR01649 324 YQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPP--REG-QLDD-GLTSY-KDYSS-----SRNHRFKKPG-SANKNNIQP 392 (481)
T ss_pred HHHHHHHHHhCCCEECCceEEEEEcccccccCC--CCC-cCcC-CCccc-ccccC-----CccccCCCcc-cccccccCC
Confidence 99999996 899999999999998754432110 000 0000 00000 00000 0000000000 000000013
Q ss_pred cccEEEEcCCCccCCHHHHHHhhccCCc--EeEeeC
Q psy16116 577 RKDCIRLRGLPYEALCILMDIFFVGQQD--SFVHKV 610 (612)
Q Consensus 577 ~~~~VfVrNLPf~vTeeDLkefFs~~gd--I~~~ki 610 (612)
...+|||+|||+++|+++|+++|+.||. |..+|+
T Consensus 393 ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~ 428 (481)
T TIGR01649 393 PSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKF 428 (481)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 4578999999999999999999999997 554444
No 17
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.89 E-value=2.1e-22 Score=212.66 Aligned_cols=175 Identities=16% Similarity=0.158 Sum_probs=128.6
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCc--eEEEEeccCcc
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDK--RYIEVTKANGE 416 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Igg--R~IeV~~s~~~ 416 (612)
++|+||+.+..+++++++|.. +.+..++++.+. .|.++|||||+|++.++|++|++ +|+..+.| +.|.|..+...
T Consensus 92 l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~ 171 (352)
T TIGR01661 92 LYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNP 171 (352)
T ss_pred EEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCC
Confidence 446666666555555555543 346777877765 58899999999999999999996 88888876 45777655322
Q ss_pred c------hhh----------ccCCCC---------------------------------------------cc------h
Q psy16116 417 D------FIN----------VAGGNN---------------------------------------------NE------A 429 (612)
Q Consensus 417 e------~~~----------~~g~~~---------------------------------------------~e------~ 429 (612)
. +.. ...... .. .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (352)
T TIGR01661 172 SSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDG 251 (352)
T ss_pred CcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccc
Confidence 1 000 000000 00 0
Q ss_pred h--hh-------ccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHH
Q psy16116 430 Q--AF-------LTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEE 499 (612)
Q Consensus 430 ~--~~-------~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~ed 499 (612)
. .. .....+++|||+|||+++++++|+++|+.|| .+.+++|+.|. +|++||||||+|.+.++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG--------~v~~v~i~~d~~t~~skG~aFV~F~~~~~ 323 (352)
T TIGR01661 252 QTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFG--------AVQNVKIIRDLTTNQCKGYGFVSMTNYDE 323 (352)
T ss_pred cccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCC--------CeEEEEEeEcCCCCCccceEEEEECCHHH
Confidence 0 00 0012345799999999999999999999999 45789999998 89999999999999999
Q ss_pred HHHHHH-hCCcccCCEEEEEEecchH
Q psy16116 500 ADKALS-KHKESIGIRYIELFRSTTA 524 (612)
Q Consensus 500 A~kAL~-~~~~~iggR~IeV~~as~~ 524 (612)
|.+||+ +||..|+||.|+|...+.+
T Consensus 324 A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 324 AAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred HHHHHHHhCCCEECCeEEEEEEccCC
Confidence 999996 8999999999999987644
No 18
>KOG4307|consensus
Probab=99.86 E-value=2.2e-20 Score=205.23 Aligned_cols=188 Identities=15% Similarity=0.044 Sum_probs=156.2
Q ss_pred CCCCCCCcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCC-cceEEEEeCCHHHHHHHHHhCCCccCceEEEE
Q psy16116 332 PTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRR-NGEAIVRFIDQEHRDMALKRHKHHIDKRYIEV 410 (612)
Q Consensus 332 ~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~Grs-rG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV 410 (612)
.++-.++++++-+.++.+...++++++||....+..+.|..+.-+++ +|.++|+|.+..++++|++++...+-.|+|+|
T Consensus 304 tpqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~ 383 (944)
T KOG4307|consen 304 TPQVVSDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQT 383 (944)
T ss_pred CCcccchhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceee
Confidence 35567899999999999999999999999876778888888876666 89999999999999999999999999999999
Q ss_pred eccCccchhhccCCCCc-------------------ch---h-hhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCcc
Q psy16116 411 TKANGEDFINVAGGNNN-------------------EA---Q-AFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSC 467 (612)
Q Consensus 411 ~~s~~~e~~~~~g~~~~-------------------e~---~-~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~ 467 (612)
....+.+|.-+.+.... +. + ....++.+.+|||.+||+.+++.++.++|++..
T Consensus 384 ~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~---- 459 (944)
T KOG4307|consen 384 GPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAA---- 459 (944)
T ss_pred cCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhh----
Confidence 98888776532111000 00 0 012245689999999999999999999999887
Q ss_pred ccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecchHHH
Q psy16116 468 NVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTTAEV 526 (612)
Q Consensus 468 ~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~~e~ 526 (612)
.| ++.|.|...++++.++.|||.|..++++.+|+. ++++++|.|.|+|..++++.|
T Consensus 460 ~V---ed~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 460 AV---EDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred hh---hheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 23 356888888999999999999999888888886 799999999999999998887
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.86 E-value=3.9e-21 Score=215.56 Aligned_cols=215 Identities=18% Similarity=0.120 Sum_probs=141.8
Q ss_pred ecCCCHHH----HHhhHhhcccccCeeeEEEeeC--CCCCCcceEEEEeCCHHHHHHHHH-hC--CCccCceEEEEeccC
Q psy16116 344 VQNIWLSL----LLNTIPGYEQVLGLGGVALCLS--AFGRRNGEAIVRFIDQEHRDMALK-RH--KHHIDKRYIEVTKAN 414 (612)
Q Consensus 344 V~nLp~~~----~e~~fkeff~~~~v~~V~ii~d--~~GrsrG~AFVeF~S~EdA~kAL~-~n--g~~IggR~IeV~~s~ 414 (612)
|+|||.+. +.+.|+.++. .+.++.+... ..++++|||||+|++.++|.+|++ ++ ...+.|+.|.|..+.
T Consensus 143 VgNLP~~~TeeeL~eeFskv~e--gvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~ 220 (578)
T TIGR01648 143 VGGIPKNKKREEILEEFSKVTE--GVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAE 220 (578)
T ss_pred eecCCcchhhHHHHHHhhcccC--CceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeec
Confidence 44555544 4444544433 2344444322 246889999999999999999996 33 235789999997765
Q ss_pred ccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcC--CCCccccccCceeEEEeeCCCCCceeEEEE
Q psy16116 415 GEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAG--TENSCNVMDGEEGVLFVKKPDGKATGDAFV 492 (612)
Q Consensus 415 ~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~--Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV 492 (612)
.++-... + ......+|||+||++++++++|+++|+.| | .++.|+++ +|||||
T Consensus 221 p~~~~d~------~-----~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G--------~I~rV~~~-------rgfAFV 274 (578)
T TIGR01648 221 PEEEVDE------D-----VMAKVKILYVRNLMTTTTEEIIEKSFSEFKPG--------KVERVKKI-------RDYAFV 274 (578)
T ss_pred ccccccc------c-----ccccccEEEEeCCCCCCCHHHHHHHHHhcCCC--------ceEEEEee-------cCeEEE
Confidence 4321100 0 01123579999999999999999999999 8 34556654 579999
Q ss_pred EeCCHHHHHHHHH-hCCcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCccc
Q psy16116 493 LFEKEEEADKALS-KHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHI 571 (612)
Q Consensus 493 ~F~s~edA~kAL~-~~~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~ 571 (612)
+|++.++|++||+ +|+..|+||.|+|..+...+.....+... ..++++.+. ..+.. .+..
T Consensus 275 eF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~r--------g~gg~~~~~----~~~~~-----~~g~-- 335 (578)
T TIGR01648 275 HFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKKSYVRYTR--------GTGGRGKER----QAARQ-----SLGQ-- 335 (578)
T ss_pred EeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCccccccccc--------ccCCCcccc----ccccc-----ccCc--
Confidence 9999999999996 89999999999999986543221111000 000000000 00000 0001
Q ss_pred ccCCCcccEEEEcCCCccCCHHHHHHhhccCCcEe
Q psy16116 572 ITSGTRKDCIRLRGLPYEALCILMDIFFVGQQDSF 606 (612)
Q Consensus 572 ~~~~~~~~~VfVrNLPf~vTeeDLkefFs~~gdI~ 606 (612)
.-+....++++.||+|+++++-+.+||...+.+.
T Consensus 336 -~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 336 -VYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred -ccCccccccccccccccccccchhhccccCcccc
Confidence 1133567899999999999999999999987654
No 20
>KOG0123|consensus
Probab=99.86 E-value=4.5e-21 Score=205.76 Aligned_cols=191 Identities=17% Similarity=0.144 Sum_probs=159.2
Q ss_pred HHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhhccCCCC
Q psy16116 349 LSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFINVAGGNN 426 (612)
Q Consensus 349 ~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~~~g~~~ 426 (612)
.+.++..|.+.|.. +.+.+|++++|. + +-|||||.|.+++||++||+ +|...+.|+.|+|.++.++.
T Consensus 8 ~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~--------- 76 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP--------- 76 (369)
T ss_pred CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC---------
Confidence 35556666665554 568999999999 8 99999999999999999997 78889999999998876531
Q ss_pred cchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-
Q psy16116 427 NEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS- 505 (612)
Q Consensus 427 ~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~- 505 (612)
..|||+||+.+++..+|.++|+.|| +| -++++..|.+| ++|| ||+|+++++|++|++
T Consensus 77 ------------~~~~i~nl~~~~~~~~~~d~f~~~g----~i----lS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~ 134 (369)
T KOG0123|consen 77 ------------SLVFIKNLDESIDNKSLYDTFSEFG----NI----LSCKVATDENG-SKGY-FVQFESEESAKKAIEK 134 (369)
T ss_pred ------------ceeeecCCCcccCcHHHHHHHHhhc----Ce----eEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHH
Confidence 1299999999999999999999999 45 57999999999 9999 999999999999997
Q ss_pred hCCcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcC
Q psy16116 506 KHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRG 585 (612)
Q Consensus 506 ~~~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrN 585 (612)
+||..++++.|.|....+++.+.. +. .+ .....+.++|+|
T Consensus 135 ~ng~ll~~kki~vg~~~~~~er~~-------~~-----~~----------------------------~~~~~t~v~vk~ 174 (369)
T KOG0123|consen 135 LNGMLLNGKKIYVGLFERKEEREA-------PL-----GE----------------------------YKKRFTNVYVKN 174 (369)
T ss_pred hcCcccCCCeeEEeeccchhhhcc-------cc-----cc----------------------------hhhhhhhhheec
Confidence 699999999999988766554310 00 00 011345799999
Q ss_pred CCccCCHHHHHHhhccCCcEeEeeCCC
Q psy16116 586 LPYEALCILMDIFFVGQQDSFVHKVPK 612 (612)
Q Consensus 586 LPf~vTeeDLkefFs~~gdI~~~kip~ 612 (612)
++.+.+++.|+++|+.+++|....+++
T Consensus 175 ~~~~~~~~~l~~~f~~~g~i~s~~v~~ 201 (369)
T KOG0123|consen 175 LEEDSTDEELKDLFSAYGSITSVAVMR 201 (369)
T ss_pred cccccchHHHHHhhcccCcceEEEEee
Confidence 999999999999999999999988763
No 21
>KOG0148|consensus
Probab=99.84 E-value=2.4e-20 Score=187.40 Aligned_cols=157 Identities=16% Similarity=0.157 Sum_probs=124.0
Q ss_pred HHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhhccCCCCc
Q psy16116 350 SLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFINVAGGNNN 427 (612)
Q Consensus 350 ~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~~~g~~~~ 427 (612)
+++++-|..|+ .+.+.++++|. +++++|||||.|-..+||++||. ++++.||+|.|+-.+++++......+...-
T Consensus 77 e~lr~aF~pFG---evS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltf 153 (321)
T KOG0148|consen 77 EKLREAFAPFG---EVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTF 153 (321)
T ss_pred HHHHHHhcccc---ccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccH
Confidence 55555555444 48899999997 58999999999999999999996 999999999999988887642211111100
Q ss_pred chhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHH-Hh
Q psy16116 428 EAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL-SK 506 (612)
Q Consensus 428 e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL-~~ 506 (612)
+.--..+....++|||+|++.-.+|++||+.|+.|| .+.+|||.+ -+||+||.|.++|.|.+|| ++
T Consensus 154 deV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG--------~I~EVRvFk-----~qGYaFVrF~tkEaAahAIv~m 220 (321)
T KOG0148|consen 154 DEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFG--------PIQEVRVFK-----DQGYAFVRFETKEAAAHAIVQM 220 (321)
T ss_pred HHHhccCCCCCceEEeCCcCccccHHHHHHhcccCC--------cceEEEEec-----ccceEEEEecchhhHHHHHHHh
Confidence 000011245678899999999999999999999999 446799984 4699999999999999999 58
Q ss_pred CCcccCCEEEEEEecc
Q psy16116 507 HKESIGIRYIELFRST 522 (612)
Q Consensus 507 ~~~~iggR~IeV~~as 522 (612)
|+.+|+|..|+.+...
T Consensus 221 Nntei~G~~VkCsWGK 236 (321)
T KOG0148|consen 221 NNTEIGGQLVRCSWGK 236 (321)
T ss_pred cCceeCceEEEEeccc
Confidence 9999999999888754
No 22
>KOG0123|consensus
Probab=99.82 E-value=1.7e-19 Score=193.62 Aligned_cols=220 Identities=16% Similarity=0.153 Sum_probs=165.9
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchh
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFI 419 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~ 419 (612)
++|.||+.+...+.|.++|.. +.+.++++..+.+| ++|| ||+|+++++|++|++ +||..+.++.|.|-....++++
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 556666665544444444433 44889999999999 9999 999999999999997 7999999999999777665554
Q ss_pred hccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHH
Q psy16116 420 NVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499 (612)
Q Consensus 420 ~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~ed 499 (612)
...... ..+ .-..++++|++.++++++|+++|..+| .+.++.++.+..|+++|||||.|.++++
T Consensus 157 ~~~~~~--~~~------~~t~v~vk~~~~~~~~~~l~~~f~~~g--------~i~s~~v~~~~~g~~~~~gfv~f~~~e~ 220 (369)
T KOG0123|consen 157 EAPLGE--YKK------RFTNVYVKNLEEDSTDEELKDLFSAYG--------SITSVAVMRDSIGKSKGFGFVNFENPED 220 (369)
T ss_pred cccccc--hhh------hhhhhheeccccccchHHHHHhhcccC--------cceEEEEeecCCCCCCCccceeecChhH
Confidence 322221 111 123499999999999999999999999 5678999999999999999999999999
Q ss_pred HHHHHH-hCCcccCCEEEEEEecchHHHH-HHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCc
Q psy16116 500 ADKALS-KHKESIGIRYIELFRSTTAEVQ-QVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTR 577 (612)
Q Consensus 500 A~kAL~-~~~~~iggR~IeV~~as~~e~~-~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~ 577 (612)
|.+|++ +++...++..+.|..+.++... ....+... .... .+. ....
T Consensus 221 a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~--------~~~~------------~~~-----------~~~~ 269 (369)
T KOG0123|consen 221 AKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFE--------QEFA------------KRS-----------VSLQ 269 (369)
T ss_pred HHHHHHhccCCcCCccceeecccccchhhHHHHhhhhH--------hhhh------------hcc-----------cccc
Confidence 999997 7999999988999888652221 11111100 0000 000 0123
Q ss_pred ccEEEEcCCCccCCHHHHHHhhccCCcEeEeeC
Q psy16116 578 KDCIRLRGLPYEALCILMDIFFVGQQDSFVHKV 610 (612)
Q Consensus 578 ~~~VfVrNLPf~vTeeDLkefFs~~gdI~~~ki 610 (612)
...|||+||+-.++.++|++.|+.||.|+..+|
T Consensus 270 ~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv 302 (369)
T KOG0123|consen 270 GANLYVKNLDETLSDEKLRKIFSSFGEITSAKV 302 (369)
T ss_pred ccccccccCccccchhHHHHHHhcccceeeEEE
Confidence 467999999999999999999999999998765
No 23
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.79 E-value=3.8e-19 Score=189.70 Aligned_cols=119 Identities=13% Similarity=0.180 Sum_probs=102.4
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
..++|||+|||+++||++|+++|+.|| .+..|+|+.|. +|+++|||||+|.++++|++||+ +++..+.+|
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G--------~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr 177 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIG--------PINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK 177 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCc
Confidence 457899999999999999999999999 45679999886 79999999999999999999995 799999999
Q ss_pred EEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHH
Q psy16116 515 YIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCIL 594 (612)
Q Consensus 515 ~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeD 594 (612)
.|+|..+.... . ....++|||+|||+++|++|
T Consensus 178 ~i~V~~a~p~~------------------~------------------------------~~~~~~lfV~nLp~~vtee~ 209 (346)
T TIGR01659 178 RLKVSYARPGG------------------E------------------------------SIKDTNLYVTNLPRTITDDQ 209 (346)
T ss_pred eeeeecccccc------------------c------------------------------ccccceeEEeCCCCcccHHH
Confidence 99997643210 0 01235799999999999999
Q ss_pred HHHhhccCCcEeEeeCC
Q psy16116 595 MDIFFVGQQDSFVHKVP 611 (612)
Q Consensus 595 LkefFs~~gdI~~~kip 611 (612)
|+++|+.|++|..++|+
T Consensus 210 L~~~F~~fG~V~~v~i~ 226 (346)
T TIGR01659 210 LDTIFGKYGQIVQKNIL 226 (346)
T ss_pred HHHHHHhcCCEEEEEEe
Confidence 99999999999887765
No 24
>KOG0145|consensus
Probab=99.79 E-value=1.7e-18 Score=173.07 Aligned_cols=238 Identities=16% Similarity=0.147 Sum_probs=157.3
Q ss_pred eecCCCHHHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhh
Q psy16116 343 LVQNIWLSLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFIN 420 (612)
Q Consensus 343 lV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~ 420 (612)
++.|++.+.++..|... +.+.++++++|+ .|.|-|||||.|.+++||++|+. +|+-.+..+.|+|..+....-
T Consensus 49 LPQ~MTqdE~rSLF~Si---GeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~-- 123 (360)
T KOG0145|consen 49 LPQNMTQDELRSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSD-- 123 (360)
T ss_pred cccccCHHHHHHHhhcc---cceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChh--
Confidence 34555555555544433 458999999998 69999999999999999999996 899999999999977654210
Q ss_pred ccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHH
Q psy16116 421 VAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEE 499 (612)
Q Consensus 421 ~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~ed 499 (612)
.. .+..|||.|||.+.|..||.++|+.|| +|+ .-+|+.|. +|-+||.|||.|+..++
T Consensus 124 -------~I-------k~aNLYvSGlPktMtqkelE~iFs~fG----rII----tSRiL~dqvtg~srGVgFiRFDKr~E 181 (360)
T KOG0145|consen 124 -------SI-------KDANLYVSGLPKTMTQKELEQIFSPFG----RII----TSRILVDQVTGLSRGVGFIRFDKRIE 181 (360)
T ss_pred -------hh-------cccceEEecCCccchHHHHHHHHHHhh----hhh----hhhhhhhcccceecceeEEEecchhH
Confidence 00 113499999999999999999999999 564 25666676 89999999999999999
Q ss_pred HHHHHH-hCCcccCC--EEEEEEecchHHHHHH---hhhhcCCCCCCCCCCC--C----CCC--CCcccccccccCC-CC
Q psy16116 500 ADKALS-KHKESIGI--RYIELFRSTTAEVQQV---LNKTMELPKNNSLTSS--N----NGL--SAQQPMLSHLAQV-PV 564 (612)
Q Consensus 500 A~kAL~-~~~~~igg--R~IeV~~as~~e~~~~---~~~~~~~~~~~~~~~e--~----~~~--s~~~~~~~~~s~~-p~ 564 (612)
|+.||. +||+.--| -.|.|.-+....-... +...-..+. .+-.+ + +.+ .-. .+.....+. |.
T Consensus 182 Ae~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~--rr~~Gp~hh~~~r~r~~~~~-~~~~~~~rfsP~ 258 (360)
T KOG0145|consen 182 AEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPA--RRYGGPMHHQAQRFRLDNLL-NPHAAQARFSPM 258 (360)
T ss_pred HHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCcc--ccCCCcccchhhhhcccccc-chhhhhccCCCc
Confidence 999996 78877655 4688887743321110 000000000 00000 0 000 000 000000000 00
Q ss_pred C-----CCC-cccccCCCcccEEEEcCCCccCCHHHHHHhhccCCcEeEeeC
Q psy16116 565 P-----YLP-QHIITSGTRKDCIRLRGLPYEALCILMDIFFVGQQDSFVHKV 610 (612)
Q Consensus 565 ~-----~~~-~~~~~~~~~~~~VfVrNLPf~vTeeDLkefFs~~gdI~~~ki 610 (612)
. ... -...+.....-||||=||..+++|.-|.++|..||-|.-+||
T Consensus 259 ~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKv 310 (360)
T KOG0145|consen 259 TIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKV 310 (360)
T ss_pred cccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEE
Confidence 0 000 000011234679999999999999999999999998887776
No 25
>KOG4205|consensus
Probab=99.79 E-value=1.3e-19 Score=189.45 Aligned_cols=169 Identities=21% Similarity=0.271 Sum_probs=141.0
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchh
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFI 419 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~ 419 (612)
++|++|+++++++-|+++|.. +.+.++++++|+ .||++||+||+|++.+.+.++|....+.|+||.|++.++..++..
T Consensus 9 lfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~ 88 (311)
T KOG4205|consen 9 LFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQ 88 (311)
T ss_pred eeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCcccc
Confidence 347777777777777776654 557788887876 599999999999999999999998889999999999888765433
Q ss_pred hccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHH
Q psy16116 420 NVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEE 498 (612)
Q Consensus 420 ~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~e 498 (612)
...+.. .....|||++||.++++++++++|+.+| .+..+.+++|. +.+++|||||.|.+++
T Consensus 89 ~~~~~~----------~~tkkiFvGG~~~~~~e~~~r~yfe~~g--------~v~~~~~~~d~~~~~~rgFgfv~~~~e~ 150 (311)
T KOG4205|consen 89 TKVGRH----------LRTKKIFVGGLPPDTTEEDFKDYFEQFG--------KVADVVIMYDKTTSRPRGFGFVTFDSED 150 (311)
T ss_pred cccccc----------cceeEEEecCcCCCCchHHHhhhhhccc--------eeEeeEEeecccccccccceeeEecccc
Confidence 221111 1234699999999999999999999999 34568888887 6899999999999999
Q ss_pred HHHHHHHhCCcccCCEEEEEEecchHHHHH
Q psy16116 499 EADKALSKHKESIGIRYIELFRSTTAEVQQ 528 (612)
Q Consensus 499 dA~kAL~~~~~~iggR~IeV~~as~~e~~~ 528 (612)
.+++++.++.+.|+++.|+|..+.++++..
T Consensus 151 sVdkv~~~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 151 SVDKVTLQKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred ccceecccceeeecCceeeEeeccchhhcc
Confidence 999999999999999999999998888765
No 26
>KOG0131|consensus
Probab=99.78 E-value=6.2e-19 Score=168.77 Aligned_cols=163 Identities=17% Similarity=0.140 Sum_probs=135.3
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED 417 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e 417 (612)
+++++||+....++.+.++|.. +.+.+|++.+|+- ...+|||||+|.++|||+.|++ ++.-.+-||.|+|.+++..+
T Consensus 11 tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~ 90 (203)
T KOG0131|consen 11 TLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQ 90 (203)
T ss_pred eEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccccc
Confidence 3448899999999999998876 6789999998874 5689999999999999999999 67778889999998877321
Q ss_pred hhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCC
Q psy16116 418 FINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEK 496 (612)
Q Consensus 418 ~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s 496 (612)
... ..+..+||+||.+.++|.-|.+.|+.||. ++ ..-.|++|+ +|+++|||||.|++
T Consensus 91 ~nl---------------~vganlfvgNLd~~vDe~~L~dtFsafG~----l~---~~P~i~rd~~tg~~~~~g~i~~~s 148 (203)
T KOG0131|consen 91 KNL---------------DVGANLFVGNLDPEVDEKLLYDTFSAFGV----LI---SPPKIMRDPDTGNPKGFGFINYAS 148 (203)
T ss_pred ccc---------------cccccccccccCcchhHHHHHHHHHhccc----cc---cCCcccccccCCCCCCCeEEechh
Confidence 110 01245999999999999999999999992 32 234577777 58999999999999
Q ss_pred HHHHHHHHH-hCCcccCCEEEEEEecchHH
Q psy16116 497 EEEADKALS-KHKESIGIRYIELFRSTTAE 525 (612)
Q Consensus 497 ~edA~kAL~-~~~~~iggR~IeV~~as~~e 525 (612)
.|.+++|++ ++++++++|.|.|..+.+++
T Consensus 149 feasd~ai~s~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 149 FEASDAAIGSMNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred HHHHHHHHHHhccchhcCCceEEEEEEecC
Confidence 999999996 79999999999999876543
No 27
>KOG0127|consensus
Probab=99.77 E-value=4.4e-18 Score=183.76 Aligned_cols=179 Identities=18% Similarity=0.229 Sum_probs=137.4
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc-
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED- 417 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e- 417 (612)
+++|+||||.+.+.+|+..|.. |.+.+|.|.+..+|+-.|||||.|....+|.+||+ .|++.|+||.|-|-++...+
T Consensus 119 rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 119 RLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred eEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 5668888888777777765554 55899999999999999999999999999999997 78999999999986653211
Q ss_pred hhh-----------------------ccCC----------------------------CCcc-hhhh-------------
Q psy16116 418 FIN-----------------------VAGG----------------------------NNNE-AQAF------------- 432 (612)
Q Consensus 418 ~~~-----------------------~~g~----------------------------~~~e-~~~~------------- 432 (612)
|.. ..+. .+.+ .+..
T Consensus 199 ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k 278 (678)
T KOG0127|consen 199 YEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDK 278 (678)
T ss_pred ccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccc
Confidence 100 0000 0000 0000
Q ss_pred ---c-----cCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHH
Q psy16116 433 ---L-----TRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKA 503 (612)
Q Consensus 433 ---~-----~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kA 503 (612)
. +...+.+||||||||++||++|++.|+.|| +++.+.|+.++ +|+++|.|||.|.+..++..|
T Consensus 279 ~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG--------~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~c 350 (678)
T KOG0127|consen 279 KAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFG--------EVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNC 350 (678)
T ss_pred hhccccccccccccceEEEecCCccccHHHHHHHHHhhc--------cceeEEEEeccCCCCcccceEEEeccHHHHHHH
Confidence 0 012458999999999999999999999999 56788999887 799999999999999999999
Q ss_pred HHhC------C-cccCCEEEEEEecc-hHHHH
Q psy16116 504 LSKH------K-ESIGIRYIELFRST-TAEVQ 527 (612)
Q Consensus 504 L~~~------~-~~iggR~IeV~~as-~~e~~ 527 (612)
|+.- + -.+.||.+.|..+- +++..
T Consensus 351 i~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~ 382 (678)
T KOG0127|consen 351 IEAASPASEDGSVLLDGRLLKVTLAVTRKEAA 382 (678)
T ss_pred HHhcCccCCCceEEEeccEEeeeeccchHHHH
Confidence 9742 4 67899999999984 44433
No 28
>KOG0148|consensus
Probab=99.77 E-value=3.1e-18 Score=172.22 Aligned_cols=185 Identities=15% Similarity=0.120 Sum_probs=135.6
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchhh
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFIN 420 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~~ 420 (612)
++|+||+.+.+|+||-.+|.. +.+...+||.+ .+.|..++...-.
T Consensus 9 lyvgnld~~vte~~i~~lf~qig~v~~~k~i~~---------------------------------e~~v~wa~~p~nQ- 54 (321)
T KOG0148|consen 9 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---------------------------------ELKVNWATAPGNQ- 54 (321)
T ss_pred EEeeccChhhHHHHHHHHHHhccccccceeehh---------------------------------hhccccccCcccC-
Confidence 348899999999999988875 55778888766 2334333322000
Q ss_pred ccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHH
Q psy16116 421 VAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEE 499 (612)
Q Consensus 421 ~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~ed 499 (612)
+ +. +....+-|||+.|...++.++||+.|.+|| + +...+|++|. ++|+||||||.|-+.+|
T Consensus 55 -----s-k~----t~~~hfhvfvgdls~eI~~e~lr~aF~pFG----e----vS~akvirD~~T~KsKGYgFVSf~~k~d 116 (321)
T KOG0148|consen 55 -----S-KP----TSNQHFHVFVGDLSPEIDNEKLREAFAPFG----E----VSDAKVIRDMNTGKSKGYGFVSFPNKED 116 (321)
T ss_pred -----C-CC----ccccceeEEehhcchhcchHHHHHHhcccc----c----cccceEeecccCCcccceeEEeccchHH
Confidence 0 00 011235699999999999999999999999 4 4669999997 89999999999999999
Q ss_pred HHHHHH-hCCcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcc
Q psy16116 500 ADKALS-KHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRK 578 (612)
Q Consensus 500 A~kAL~-~~~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~ 578 (612)
|++||. |||+.||+|.|+-..++++-. +....+. +.+. .+. .++..+
T Consensus 117 AEnAI~~MnGqWlG~R~IRTNWATRKp~-----e~n~~~l-------------------tfde----V~N----Qssp~N 164 (321)
T KOG0148|consen 117 AENAIQQMNGQWLGRRTIRTNWATRKPS-----EMNGKPL-------------------TFDE----VYN----QSSPDN 164 (321)
T ss_pred HHHHHHHhCCeeeccceeeccccccCcc-----ccCCCCc-------------------cHHH----Hhc----cCCCCC
Confidence 999995 899999999999888765430 0000000 0000 111 134578
Q ss_pred cEEEEcCCCccCCHHHHHHhhccCCcEeEeeC
Q psy16116 579 DCIRLRGLPYEALCILMDIFFVGQQDSFVHKV 610 (612)
Q Consensus 579 ~~VfVrNLPf~vTeeDLkefFs~~gdI~~~ki 610 (612)
++|||+|++-..||++|++.|+.||+|.-++|
T Consensus 165 tsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRv 196 (321)
T KOG0148|consen 165 TSVYVGNIASGLTEDLMRQTFSPFGPIQEVRV 196 (321)
T ss_pred ceEEeCCcCccccHHHHHHhcccCCcceEEEE
Confidence 89999999999999999999999987766554
No 29
>KOG0144|consensus
Probab=99.75 E-value=3.8e-18 Score=180.24 Aligned_cols=161 Identities=19% Similarity=0.213 Sum_probs=127.4
Q ss_pred cccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCC-CccCc--eEEEEec
Q psy16116 339 ALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHK-HHIDK--RYIEVTK 412 (612)
Q Consensus 339 ~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng-~~Igg--R~IeV~~ 412 (612)
.+..||+.+|....|.+++++|+. +.|.+|.|++|+ +|.++|+|||+|.+.+||++|+. +|+ +.|-| ..|.|+.
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 344557777777777777777665 459999999998 58899999999999999999996 555 44544 4577766
Q ss_pred cCccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEE
Q psy16116 413 ANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFV 492 (612)
Q Consensus 413 s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV 492 (612)
+..+..+- .+++.|||+-|+..++|.||+++|+.|| -++.+.|++|.+|.+||+|||
T Consensus 114 Ad~E~er~---------------~~e~KLFvg~lsK~~te~evr~iFs~fG--------~Ied~~ilrd~~~~sRGcaFV 170 (510)
T KOG0144|consen 114 ADGERERI---------------VEERKLFVGMLSKQCTENEVREIFSRFG--------HIEDCYILRDPDGLSRGCAFV 170 (510)
T ss_pred cchhhhcc---------------ccchhhhhhhccccccHHHHHHHHHhhC--------ccchhhheecccccccceeEE
Confidence 65431110 1245699999999999999999999999 357799999999999999999
Q ss_pred EeCCHHHHHHHHH-hCC-cccCC--EEEEEEecc
Q psy16116 493 LFEKEEEADKALS-KHK-ESIGI--RYIELFRST 522 (612)
Q Consensus 493 ~F~s~edA~kAL~-~~~-~~igg--R~IeV~~as 522 (612)
.|.+.|.|..||+ +|+ +.|.| -.+-|+.++
T Consensus 171 ~fstke~A~~Aika~ng~~tmeGcs~PLVVkFAD 204 (510)
T KOG0144|consen 171 KFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFAD 204 (510)
T ss_pred EEehHHHHHHHHHhhccceeeccCCCceEEEecc
Confidence 9999999999996 665 56766 468888774
No 30
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.75 E-value=1.8e-17 Score=183.84 Aligned_cols=167 Identities=12% Similarity=0.121 Sum_probs=122.0
Q ss_pred HHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhhc---cC-
Q psy16116 350 SLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFINV---AG- 423 (612)
Q Consensus 350 ~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~~---~g- 423 (612)
++++++|+.|+ .+..+.|+++. +|+++|||||+|.+.++|++||+ +++..|+|+.|.|..+........ ..
T Consensus 310 ~~l~~~f~~~G---~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~ 386 (509)
T TIGR01642 310 DQIKELLESFG---DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNG 386 (509)
T ss_pred HHHHHHHHhcC---CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccccc
Confidence 55555555554 47888888875 68999999999999999999996 899999999999977643211000 00
Q ss_pred CCC-----cc-hhhh--ccCCcccEEEEeCCCCCC----------CHHHHHHHHhcCCCCccccccCceeEEEeeCC---
Q psy16116 424 GNN-----NE-AQAF--LTRGAQVIIRMRGLPYEC----------TAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP--- 482 (612)
Q Consensus 424 ~~~-----~e-~~~~--~~~~~~~~VfV~nLP~s~----------te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~--- 482 (612)
... .. .... .......+|+|.||.+.- ..+||++.|+.|| .+..|.|+.+.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G--------~v~~v~i~~~~~~~ 458 (509)
T TIGR01642 387 MAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYG--------PLINIVIPRPNGDR 458 (509)
T ss_pred ccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcC--------CeeEEEeeccCcCC
Confidence 000 00 0000 012245789999997431 2368999999999 45678888652
Q ss_pred -CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecchHHHH
Q psy16116 483 -DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTTAEVQ 527 (612)
Q Consensus 483 -~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~~e~~ 527 (612)
.+...|+|||+|.+.++|++||+ +||..|+||.|.|.......+.
T Consensus 459 ~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~~~ 505 (509)
T TIGR01642 459 NSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGEDCYK 505 (509)
T ss_pred CcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHHHhh
Confidence 35678999999999999999996 8999999999999998876653
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.73 E-value=2.5e-17 Score=180.43 Aligned_cols=131 Identities=15% Similarity=0.105 Sum_probs=104.5
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~ 515 (612)
...+|||+|||+++++++|++||+.+| .+..|+|+.|. +|+++|||||+|.+.++|.+||.+++..+.|+.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G--------~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~ 159 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVG--------KVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRP 159 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--------CeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCee
Confidence 457899999999999999999999999 45679999986 789999999999999999999999999999999
Q ss_pred EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116 516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM 595 (612)
Q Consensus 516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL 595 (612)
|.|..+..+..... . .. .. .+ .......+|||+|||+++|+++|
T Consensus 160 i~v~~~~~~~~~~~-~-~~---------~~----------------~~---------~~~p~~~~l~v~nl~~~~te~~l 203 (457)
T TIGR01622 160 IIVQSSQAEKNRAA-K-AA---------TH----------------QP---------GDIPNFLKLYVGNLHFNITEQEL 203 (457)
T ss_pred eEEeecchhhhhhh-h-cc---------cc----------------cC---------CCCCCCCEEEEcCCCCCCCHHHH
Confidence 99986543211100 0 00 00 00 00123578999999999999999
Q ss_pred HHhhccCCcEeEeeCC
Q psy16116 596 DIFFVGQQDSFVHKVP 611 (612)
Q Consensus 596 kefFs~~gdI~~~kip 611 (612)
+++|+.||.|..++++
T Consensus 204 ~~~f~~~G~i~~v~~~ 219 (457)
T TIGR01622 204 RQIFEPFGDIEDVQLH 219 (457)
T ss_pred HHHHHhcCCeEEEEEE
Confidence 9999999988777654
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.73 E-value=9.1e-18 Score=189.05 Aligned_cols=129 Identities=16% Similarity=0.201 Sum_probs=102.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
.++|||+|||+++++++|+++|+.|| .+.+|+|+.|+ +|+++|||||+|.+.++|++||+ +|+..|+||.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG--------~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~ 178 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFG--------PIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRN 178 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccC--------CEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecce
Confidence 46799999999999999999999999 45779999986 79999999999999999999996 7999999999
Q ss_pred EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116 516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM 595 (612)
Q Consensus 516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL 595 (612)
|+|...... +. ..+.. + .... .....++|||+|||+++++++|
T Consensus 179 IkV~rp~~~------------p~--a~~~~-~------------------~~~~----~~~~~~rLfVgnLp~~vteedL 221 (612)
T TIGR01645 179 IKVGRPSNM------------PQ--AQPII-D------------------MVQE----EAKKFNRIYVASVHPDLSETDI 221 (612)
T ss_pred eeecccccc------------cc--ccccc-c------------------cccc----cccccceEEeecCCCCCCHHHH
Confidence 999732110 00 00000 0 0000 0123468999999999999999
Q ss_pred HHhhccCCcEeEeeCC
Q psy16116 596 DIFFVGQQDSFVHKVP 611 (612)
Q Consensus 596 kefFs~~gdI~~~kip 611 (612)
+++|+.||+|..++|+
T Consensus 222 k~lFs~FG~I~svrl~ 237 (612)
T TIGR01645 222 KSVFEAFGEIVKCQLA 237 (612)
T ss_pred HHHHhhcCCeeEEEEE
Confidence 9999999999888775
No 33
>KOG0117|consensus
Probab=99.72 E-value=3.6e-17 Score=173.61 Aligned_cols=170 Identities=18% Similarity=0.117 Sum_probs=129.8
Q ss_pred CCCCCCcccceecCCCHHHHHhhHhhcccc--cCeeeEEEeeCCC--CCCcceEEEEeCCHHHHHHHHHh--CC-CccCc
Q psy16116 333 TPGNPVALCPLVQNIWLSLLLNTIPGYEQV--LGLGGVALCLSAF--GRRNGEAIVRFIDQEHRDMALKR--HK-HHIDK 405 (612)
Q Consensus 333 l~~~~~~l~vlV~nLp~~~~e~~fkeff~~--~~v~~V~ii~d~~--GrsrG~AFVeF~S~EdA~kAL~~--ng-~~Igg 405 (612)
+--..+++++||+|+|...+++.|.+-++. -++.+|.+....+ +|+||||||+|.|...|..|-.+ ++ -.+.|
T Consensus 158 vc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwg 237 (506)
T KOG0117|consen 158 VCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWG 237 (506)
T ss_pred EEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecC
Confidence 334567789999999998887777654443 3477777776653 78999999999999999988863 33 34667
Q ss_pred eEEEEeccCccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCC
Q psy16116 406 RYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485 (612)
Q Consensus 406 R~IeV~~s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~Gr 485 (612)
..|.|.++..++-.. .. . ...-..||||||+-++||+.|++.|+.|| .+++|+.++|
T Consensus 238 n~~tVdWAep~~e~d---ed--~------ms~VKvLYVRNL~~~tTeE~lk~~F~~~G--------~veRVkk~rD---- 294 (506)
T KOG0117|consen 238 NAITVDWAEPEEEPD---ED--T------MSKVKVLYVRNLMESTTEETLKKLFNEFG--------KVERVKKPRD---- 294 (506)
T ss_pred CcceeeccCcccCCC---hh--h------hhheeeeeeeccchhhhHHHHHHHHHhcc--------ceEEeecccc----
Confidence 778887765432100 00 0 01224699999999999999999999999 5577776644
Q ss_pred ceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecchHHHHH
Q psy16116 486 ATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTTAEVQQ 528 (612)
Q Consensus 486 skG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~~e~~~ 528 (612)
||||.|.+.++|.+||+ +|+..|+|..|+|..+.+.+-++
T Consensus 295 ---YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 295 ---YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred ---eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 99999999999999996 89999999999999997665443
No 34
>KOG0124|consensus
Probab=99.68 E-value=4.9e-17 Score=168.66 Aligned_cols=168 Identities=17% Similarity=0.215 Sum_probs=133.9
Q ss_pred ccceecCCCHHHHHhhHhhccc-ccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQ-VLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~-~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
++|+|+.++|+.-|+-++..|. ++.+++|.|.-|+ +|+++|||||+|+-+|.|+.||+ +|+..+|||.|+|-+-++-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 3566888888888888886554 4679999998776 68999999999999999999997 8999999999999644331
Q ss_pred -chhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCC-CceeEEEEEe
Q psy16116 417 -DFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDG-KATGDAFVLF 494 (612)
Q Consensus 417 -e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~G-rskG~AFV~F 494 (612)
+-.........+.+ .-++|||..+..+.+|+||+..|+.|| +| ..+.+..+.+| ..|||||++|
T Consensus 194 pQAQpiID~vqeeAk------~fnRiYVaSvHpDLSe~DiKSVFEAFG----~I----~~C~LAr~pt~~~HkGyGfiEy 259 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAK------KFNRIYVASVHPDLSETDIKSVFEAFG----EI----VKCQLARAPTGRGHKGYGFIEY 259 (544)
T ss_pred cccchHHHHHHHHHH------hhheEEeeecCCCccHHHHHHHHHhhc----ce----eeEEeeccCCCCCccceeeEEe
Confidence 10000000001112 235699999999999999999999999 44 56899999865 5899999999
Q ss_pred CCHHHHHHHHH-hCCcccCCEEEEEEec
Q psy16116 495 EKEEEADKALS-KHKESIGIRYIELFRS 521 (612)
Q Consensus 495 ~s~edA~kAL~-~~~~~iggR~IeV~~a 521 (612)
.+......|+. +|-..+||.+++|-++
T Consensus 260 ~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 260 NNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred ccccchHHHhhhcchhhcccceEecccc
Confidence 99999999995 8999999999999886
No 35
>KOG0147|consensus
Probab=99.66 E-value=2.2e-16 Score=171.52 Aligned_cols=166 Identities=19% Similarity=0.181 Sum_probs=132.0
Q ss_pred ecCCCHHHHHhhHhhcccccCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchhhcc
Q psy16116 344 VQNIWLSLLLNTIPGYEQVLGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVA 422 (612)
Q Consensus 344 V~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~~~~ 422 (612)
...++..++++||+.++. +.+|++|.|+. ++++|.|||+|.+.+.+-.||.+.|+.+.|-+|.|..+..+.-....
T Consensus 188 a~r~~pRdL~efFs~~gk---VrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr~a~ 264 (549)
T KOG0147|consen 188 ARRNPPRDLEEFFSIVGK---VRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNRAAN 264 (549)
T ss_pred hhcCCchhHHHHHHhhcC---cceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHHHHHh
Confidence 345566777888877665 88999999975 78999999999999999999999999999999999776544322111
Q ss_pred CCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHH
Q psy16116 423 GGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEAD 501 (612)
Q Consensus 423 g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~ 501 (612)
.+.....+.+. ..-..++|+||.++.++++|+..|+.|| .++.|.+.+|. +|+++|||||+|.+.++|+
T Consensus 265 ~s~a~~~k~~~--~p~~rl~vgnLHfNite~~lr~ifepfg--------~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 265 ASPALQGKGFT--GPMRRLYVGNLHFNITEDMLRGIFEPFG--------KIENVQLTKDSETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred ccccccccccc--cchhhhhhcccccCchHHHHhhhccCcc--------cceeeeeccccccccccCcceEEEecHHHHH
Confidence 11110111111 1112299999999999999999999999 56889999987 9999999999999999999
Q ss_pred HHHH-hCCcccCCEEEEEEecc
Q psy16116 502 KALS-KHKESIGIRYIELFRST 522 (612)
Q Consensus 502 kAL~-~~~~~iggR~IeV~~as 522 (612)
+|++ +|+-+|-||.|.|...+
T Consensus 335 ~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 335 KALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred HHHHHhccceecCceEEEEEee
Confidence 9986 79999999999998764
No 36
>KOG0110|consensus
Probab=99.64 E-value=8.1e-16 Score=170.92 Aligned_cols=172 Identities=20% Similarity=0.210 Sum_probs=134.8
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCC----CcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGR----RNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~Gr----srG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+|+.||.|+++.+.+...|.. +.+.++.|.+.++++ |.|||||+|.+.++|++|++ ++++.|+|+.|+|..+..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 779999999998888876665 558888887777664 56999999999999999997 678999999999987762
Q ss_pred cchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeC-CCCCceeEEEEEe
Q psy16116 416 EDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKK-PDGKATGDAFVLF 494 (612)
Q Consensus 416 ~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d-~~GrskG~AFV~F 494 (612)
..-... + .+ .........|.||||||.++..+|+++|..|| .+.+|+|+.. ..+-.+|||||+|
T Consensus 598 k~~~~~-g---K~---~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFG--------qlksvRlPKK~~k~a~rGF~Fv~f 662 (725)
T KOG0110|consen 598 KPASTV-G---KK---KSKKKKGTKILVRNIPFEATKREVRKLFTAFG--------QLKSVRLPKKIGKGAHRGFGFVDF 662 (725)
T ss_pred cccccc-c---cc---cccccccceeeeeccchHHHHHHHHHHHhccc--------ceeeeccchhhcchhhccceeeec
Confidence 211110 0 00 01112346799999999999999999999999 4567999977 3556799999999
Q ss_pred CCHHHHHHHHH-hCCcccCCEEEEEEecchHHHHH
Q psy16116 495 EKEEEADKALS-KHKESIGIRYIELFRSTTAEVQQ 528 (612)
Q Consensus 495 ~s~edA~kAL~-~~~~~iggR~IeV~~as~~e~~~ 528 (612)
-++.+|.+|+. +....+-||.+-+.++.......
T Consensus 663 ~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~~e 697 (725)
T KOG0110|consen 663 LTPREAKNAFDALGSTHLYGRRLVLEWAKSDNTME 697 (725)
T ss_pred cCcHHHHHHHHhhcccceechhhheehhccchHHH
Confidence 99999999995 67778888988888886554433
No 37
>KOG0110|consensus
Probab=99.63 E-value=1.6e-15 Score=168.60 Aligned_cols=223 Identities=20% Similarity=0.198 Sum_probs=150.7
Q ss_pred CcccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 338 VALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 338 ~~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
.+..++++|||..++.+++.+.|.. +.+..| ++++.|. -++|+|....+|++|++ +....+..-.+.+.++..
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rv--llp~~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~ 458 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRV--LLPPGGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPE 458 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhccccccee--ecCcccc---eeeeeecCccchHHHHHHhchhhhccCccccccChh
Confidence 3446789999999988888865543 444444 3343331 38999999999999997 444444444443333322
Q ss_pred cchh--------h-----ccCCCCcch-----------hh------h---ccCCcc-cEEEEeCCCCCCCHHHHHHHHhc
Q psy16116 416 EDFI--------N-----VAGGNNNEA-----------QA------F---LTRGAQ-VIIRMRGLPYECTAKQVIDFFEA 461 (612)
Q Consensus 416 ~e~~--------~-----~~g~~~~e~-----------~~------~---~~~~~~-~~VfV~nLP~s~te~dLrefF~~ 461 (612)
+-+. . .......+. ++ . .+.... .+|||+||+|+++.+++...|+.
T Consensus 459 dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k 538 (725)
T KOG0110|consen 459 DVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSK 538 (725)
T ss_pred hhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHh
Confidence 1111 0 000000000 00 0 001122 33999999999999999999999
Q ss_pred CCCCccccccCceeEEEeeCCCCC----ceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecchHHHHHHhhhhcCC
Q psy16116 462 GTENSCNVMDGEEGVLFVKKPDGK----ATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTTAEVQQVLNKTMEL 536 (612)
Q Consensus 462 ~Gi~~~~Ivd~v~~I~i~~d~~Gr----skG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~~e~~~~~~~~~~~ 536 (612)
.| .+.+|.|.+.++++ |.|||||+|++.++|+.|++ ++|..++|+.|+|..+..+. ..
T Consensus 539 ~G--------~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~-------~~-- 601 (725)
T KOG0110|consen 539 QG--------TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKP-------AS-- 601 (725)
T ss_pred cC--------eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcc-------cc--
Confidence 99 34568887766654 55999999999999999997 68999999999999875110 00
Q ss_pred CCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHHHHhhccCCcEeEeeCCC
Q psy16116 537 PKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDIFFVGQQDSFVHKVPK 612 (612)
Q Consensus 537 ~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDLkefFs~~gdI~~~kip~ 612 (612)
. .+ . ..+ .....+.|.||||||.++..+|+++|..||.+..+.|||
T Consensus 602 ~------~g-K-------------~~~----------~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPK 647 (725)
T KOG0110|consen 602 T------VG-K-------------KKS----------KKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPK 647 (725)
T ss_pred c------cc-c-------------ccc----------cccccceeeeeccchHHHHHHHHHHHhcccceeeeccch
Confidence 0 00 0 000 011346899999999999999999999999999999997
No 38
>KOG0145|consensus
Probab=99.53 E-value=1.1e-13 Score=138.91 Aligned_cols=170 Identities=18% Similarity=0.184 Sum_probs=123.1
Q ss_pred ceecCCCH----HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCc--eEEEEeccC
Q psy16116 342 PLVQNIWL----SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDK--RYIEVTKAN 414 (612)
Q Consensus 342 vlV~nLp~----~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Igg--R~IeV~~s~ 414 (612)
++|.+||. .++|+.|+.|+.+ +.+-.++..-+|-+||.|||.|...++|+.|++ +|++.=-| ..|.|..++
T Consensus 130 LYvSGlPktMtqkelE~iFs~fGrI--ItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 130 LYVSGLPKTMTQKELEQIFSPFGRI--ITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred eEEecCCccchHHHHHHHHHHhhhh--hhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecC
Confidence 44555555 5667777777653 233333334479999999999999999999997 77765444 348886664
Q ss_pred ccchh--------------hccCC-CCcch---------------hhhc-----------------cCCcccEEEEeCCC
Q psy16116 415 GEDFI--------------NVAGG-NNNEA---------------QAFL-----------------TRGAQVIIRMRGLP 447 (612)
Q Consensus 415 ~~e~~--------------~~~g~-~~~e~---------------~~~~-----------------~~~~~~~VfV~nLP 447 (612)
...-. +..++ ..... ..|. ..+.+.||||-||.
T Consensus 208 nPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLs 287 (360)
T KOG0145|consen 208 NPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLS 287 (360)
T ss_pred CcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecC
Confidence 42100 00000 00000 0010 12468999999999
Q ss_pred CCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCC-CCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEec
Q psy16116 448 YECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPD-GKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRS 521 (612)
Q Consensus 448 ~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~-GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~a 521 (612)
.+++|.-|-++|..|| .+..|+|++|.+ .++||||||.+.+.++|..||. +||..+++|.+.|.--
T Consensus 288 pd~de~~LWQlFgpFG--------Av~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 288 PDADESILWQLFGPFG--------AVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCchHhHHHHHhCccc--------ceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 9999999999999999 456799999984 8999999999999999999995 8999999999998653
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.52 E-value=6.6e-14 Score=132.18 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=72.2
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||++++|+||+++|++|| .+..++|+.|. +|+++|||||+|++.++|++||+ +|+..|+||
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G--------~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr 104 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFG--------DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGR 104 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCC--------CeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 456799999999999999999999999 45679999887 79999999999999999999996 799999999
Q ss_pred EEEEEecch
Q psy16116 515 YIELFRSTT 523 (612)
Q Consensus 515 ~IeV~~as~ 523 (612)
.|.|..+..
T Consensus 105 ~l~V~~a~~ 113 (144)
T PLN03134 105 HIRVNPAND 113 (144)
T ss_pred EEEEEeCCc
Confidence 999998753
No 40
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.48 E-value=1.7e-13 Score=110.59 Aligned_cols=69 Identities=35% Similarity=0.504 Sum_probs=64.5
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEE
Q psy16116 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIE 517 (612)
Q Consensus 441 VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~Ie 517 (612)
|||+|||+++++++|+++|+.+| .+..+.+..+.+|+++|+|||+|.+.++|++|++ +++..++||.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g--------~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFG--------KIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTS--------TEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhh--------hcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999 4567899888889999999999999999999997 899999999875
No 41
>KOG0109|consensus
Probab=99.47 E-value=8.3e-14 Score=141.79 Aligned_cols=143 Identities=16% Similarity=0.151 Sum_probs=119.4
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccch
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDF 418 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~ 418 (612)
.+||+|||.+..+..++.+|+. +.+.++.|+++ ||||..++...++.|+. +|+..|+|..|.|..+..+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK-- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK-- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEecccc--
Confidence 3567888887777777776665 55888999875 99999999999999998 8999999999999877543
Q ss_pred hhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHH
Q psy16116 419 INVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEE 498 (612)
Q Consensus 419 ~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~e 498 (612)
...+.+++|+||.+.|+.++|+..|+++| .| .+..|+ ++|+||.|+-.+
T Consensus 75 ----------------sk~stkl~vgNis~tctn~ElRa~fe~yg----pv----iecdiv-------kdy~fvh~d~~e 123 (346)
T KOG0109|consen 75 ----------------SKASTKLHVGNISPTCTNQELRAKFEKYG----PV----IECDIV-------KDYAFVHFDRAE 123 (346)
T ss_pred ----------------CCCccccccCCCCccccCHHHhhhhcccC----Cc----eeeeee-------cceeEEEEeecc
Confidence 01234699999999999999999999999 23 346665 469999999999
Q ss_pred HHHHHHH-hCCcccCCEEEEEEecch
Q psy16116 499 EADKALS-KHKESIGIRYIELFRSTT 523 (612)
Q Consensus 499 dA~kAL~-~~~~~iggR~IeV~~as~ 523 (612)
||..|++ +|+.++.|+.+.|..++.
T Consensus 124 da~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 124 DAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred chHHHHhcccccccccceeeeeeecc
Confidence 9999995 899999999999998753
No 42
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.45 E-value=4.2e-13 Score=109.67 Aligned_cols=69 Identities=32% Similarity=0.457 Sum_probs=61.8
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh-CCcccCCEEEE
Q psy16116 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSK-HKESIGIRYIE 517 (612)
Q Consensus 441 VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~-~~~~iggR~Ie 517 (612)
|+|+|||++++++||+++|+.+| .+..+++..+++|+++|+|||+|.+.++|.+|++. ++..++||.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g--------~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFG--------PVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSS--------BEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcC--------CcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999 45789999988899999999999999999999985 67999999885
No 43
>KOG4205|consensus
Probab=99.42 E-value=1.7e-13 Score=143.87 Aligned_cols=122 Identities=21% Similarity=0.287 Sum_probs=99.6
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~ 515 (612)
+...+||++|+|+++++.|+++|+.+| +| ..+.+++|+ +||++||+||+|++.+.+.++|....+.|+||.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~G----ev----~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ 76 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFG----EV----TDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRS 76 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccC----ce----eeEEEeccCCCCCcccccceecCCCcchheeecccccccCCcc
Confidence 346799999999999999999999999 44 458888887 799999999999999999999999999999999
Q ss_pred EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116 516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM 595 (612)
Q Consensus 516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL 595 (612)
|++.++...+... .. .+ .....+|||++||.+++++++
T Consensus 77 ve~k~av~r~~~~--------------~~---------------~~-------------~~~tkkiFvGG~~~~~~e~~~ 114 (311)
T KOG4205|consen 77 VEPKRAVSREDQT--------------KV---------------GR-------------HLRTKKIFVGGLPPDTTEEDF 114 (311)
T ss_pred ccceeccCccccc--------------cc---------------cc-------------ccceeEEEecCcCCCCchHHH
Confidence 9998775433110 00 00 013458999999999999999
Q ss_pred HHhhccCCcEeEe
Q psy16116 596 DIFFVGQQDSFVH 608 (612)
Q Consensus 596 kefFs~~gdI~~~ 608 (612)
+++|..|+.|.-.
T Consensus 115 r~yfe~~g~v~~~ 127 (311)
T KOG4205|consen 115 KDYFEQFGKVADV 127 (311)
T ss_pred hhhhhccceeEee
Confidence 9999999855433
No 44
>KOG4307|consensus
Probab=99.37 E-value=2.2e-12 Score=142.98 Aligned_cols=154 Identities=14% Similarity=0.163 Sum_probs=109.5
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCc-eeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKA-TGDAFVLFEKEEEADKALSKHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~Grs-kG~AFV~F~s~edA~kAL~~~~~~iggR~ 515 (612)
+.+++.+++.+|++++.|+++||.... +..+.|..+.-+++ +|-++|+|....++.+|+..+...+-.|+
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~~---------~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~ 380 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGRN---------AQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRP 380 (944)
T ss_pred hhheeeecccccccccchhhhhcCccc---------ccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcc
Confidence 468899999999999999999998765 24567777775554 99999999999999999999999999999
Q ss_pred EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCC----CCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCC
Q psy16116 516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGL----SAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEAL 591 (612)
Q Consensus 516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~----s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vT 591 (612)
|+|.+....++..+-++....+.. ...+.. ...+++.. + .+.......-..||||..||+.++
T Consensus 381 ~q~~P~g~~~~~~a~~~~~~~~~~----~~~~~hg~p~~~pr~~~~-----~----gq~vp~P~~ag~~lyv~~lP~~t~ 447 (944)
T KOG4307|consen 381 FQTGPPGNLGRNGAPPFQAGVPPP----VIQNNHGRPIAPPRAMVR-----P----GQNVPFPGGAGGALYVFQLPVMTP 447 (944)
T ss_pred eeecCCCccccccCccccccCCCC----cccccCCCCCCCcccccC-----C----CCCCCCCCCccceEEeccCCcccc
Confidence 999999877765444433222210 111110 11111110 0 011112245678999999999999
Q ss_pred HHHHHHhhccC---Cc-EeEeeCCC
Q psy16116 592 CILMDIFFVGQ---QD-SFVHKVPK 612 (612)
Q Consensus 592 eeDLkefFs~~---gd-I~~~kip~ 612 (612)
+.++.++|++. .| |.+...|+
T Consensus 448 ~~~~v~~f~~~~~Ved~I~lt~~P~ 472 (944)
T KOG4307|consen 448 IVPPVNKFMGAAAVEDFIELTRLPT 472 (944)
T ss_pred ccchhhhhhhhhhhhheeEeccCCc
Confidence 99999999985 45 77776664
No 45
>KOG0149|consensus
Probab=99.36 E-value=8.6e-13 Score=131.31 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=68.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYI 516 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I 516 (612)
-.+|||+||+|.+..++|+++|+.|| +|+ ++.|+.|+ +||+||||||+|++.|.|.+|++--+-.|+||+.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfG----eI~----eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~a 83 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFG----EIV----EAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKA 83 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhC----ceE----EEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCccccccc
Confidence 35699999999999999999999999 554 47777776 8999999999999999999999988999999998
Q ss_pred EEEecc
Q psy16116 517 ELFRST 522 (612)
Q Consensus 517 eV~~as 522 (612)
.+..++
T Consensus 84 NcnlA~ 89 (247)
T KOG0149|consen 84 NCNLAS 89 (247)
T ss_pred ccchhh
Confidence 887665
No 46
>KOG4212|consensus
Probab=99.36 E-value=8e-12 Score=132.82 Aligned_cols=172 Identities=20% Similarity=0.271 Sum_probs=136.3
Q ss_pred cceecCCCHHHHHhhHhhcccc--cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV--LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED 417 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~--~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e 417 (612)
.+||.|+||+.-..+|++++.. +.+.-|.++.|..|++||+|.|||+++|.++||++ ++++.+.||.+.|+....++
T Consensus 46 ~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q 125 (608)
T KOG4212|consen 46 SVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQ 125 (608)
T ss_pred eEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchh
Confidence 4899999999999999987753 66888999999999999999999999999999997 78889999999997765432
Q ss_pred hhh---c--cC------------------------CC-----Ccch--------------------h---------hhc-
Q psy16116 418 FIN---V--AG------------------------GN-----NNEA--------------------Q---------AFL- 433 (612)
Q Consensus 418 ~~~---~--~g------------------------~~-----~~e~--------------------~---------~~~- 433 (612)
-.+ . .+ +. +.+. + .|.
T Consensus 126 ~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr 205 (608)
T KOG4212|consen 126 RDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLR 205 (608)
T ss_pred hhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhh
Confidence 111 0 00 00 0000 0 000
Q ss_pred -----cCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh-C
Q psy16116 434 -----TRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSK-H 507 (612)
Q Consensus 434 -----~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~-~ 507 (612)
.......+||.||.|.+....|++.|.-.| .+++|.+-.|+.|.++|||.+++..+-++-.||.+ +
T Consensus 206 ~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAG--------kv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~ 277 (608)
T KOG4212|consen 206 SLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAG--------KVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLD 277 (608)
T ss_pred hccCCCCCccceeeeeccccccchHHHHHHhccce--------eeeeeceeeccccccCCeeEEEecchHHHHHHHHhhc
Confidence 012456799999999999999999999888 56889999999999999999999999999999975 7
Q ss_pred CcccCCEEEEEEe
Q psy16116 508 KESIGIRYIELFR 520 (612)
Q Consensus 508 ~~~iggR~IeV~~ 520 (612)
+.-++.|...+..
T Consensus 278 ~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 278 RQGLFDRRMTVRL 290 (608)
T ss_pred cCCCccccceeec
Confidence 7777777766655
No 47
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.36 E-value=2.3e-12 Score=131.52 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=68.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIE 517 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~Ie 517 (612)
.++|||+|||++++|+||++||+.|| .++.|+|+.|.. .+|||||+|.++++|++||.+++..|+||.|+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G--------~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~ 73 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSG--------DIEYVEMQSENE--RSQIAYVTFKDPQGAETALLLSGATIVDQSVT 73 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEE
Confidence 36799999999999999999999999 557799987753 57999999999999999999999999999999
Q ss_pred EEecc
Q psy16116 518 LFRST 522 (612)
Q Consensus 518 V~~as 522 (612)
|..+.
T Consensus 74 Vt~a~ 78 (260)
T PLN03120 74 ITPAE 78 (260)
T ss_pred EEecc
Confidence 99864
No 48
>KOG0131|consensus
Probab=99.35 E-value=1.1e-12 Score=126.16 Aligned_cols=118 Identities=17% Similarity=0.134 Sum_probs=100.0
Q ss_pred CCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccC
Q psy16116 435 RGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIG 512 (612)
Q Consensus 435 ~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~ig 512 (612)
+..+.+|||+||+..++++-|.++|-..| .|+ .+++++|+ +...+|||||+|.++|||+-|++ ++.-.+-
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqag----pVv----~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY 77 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAG----PVV----NLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY 77 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcC----cee----eeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc
Confidence 34567899999999999999999999999 454 59999998 77899999999999999999998 6888999
Q ss_pred CEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCH
Q psy16116 513 IRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALC 592 (612)
Q Consensus 513 gR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTe 592 (612)
||.|+|.+++... . +...+..+||+||.+.++|
T Consensus 78 grpIrv~kas~~~--------~---------------------------------------nl~vganlfvgNLd~~vDe 110 (203)
T KOG0131|consen 78 GRPIRVNKASAHQ--------K---------------------------------------NLDVGANLFVGNLDPEVDE 110 (203)
T ss_pred CceeEEEeccccc--------c---------------------------------------cccccccccccccCcchhH
Confidence 9999998876100 0 0113367999999999999
Q ss_pred HHHHHhhccCCcEeE
Q psy16116 593 ILMDIFFVGQQDSFV 607 (612)
Q Consensus 593 eDLkefFs~~gdI~~ 607 (612)
.-|...|+.||.+..
T Consensus 111 ~~L~dtFsafG~l~~ 125 (203)
T KOG0131|consen 111 KLLYDTFSAFGVLIS 125 (203)
T ss_pred HHHHHHHHhcccccc
Confidence 999999999987654
No 49
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.35 E-value=7.8e-12 Score=122.47 Aligned_cols=141 Identities=20% Similarity=0.241 Sum_probs=103.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
..+|||+|||+++++++|+++|+.+| .+..|++..|+ +|+++|||||+|.+.+++.+|++ +++..+.||.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g--------~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~ 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFG--------PVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRP 186 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcC--------ceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCce
Confidence 47899999999999999999999999 45679999996 89999999999999999999997 6889999999
Q ss_pred EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116 516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM 595 (612)
Q Consensus 516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL 595 (612)
|.|..... ....+...... ... .... ...............+++.|+++.++++++
T Consensus 187 ~~v~~~~~----~~~~~~~~~~~---~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (306)
T COG0724 187 LRVQKAQP----ASQPRSELSNN---LDA--SFAK---------------KLSRGKALLLEKSDNLYVGNLPLKTAEEEL 242 (306)
T ss_pred eEeecccc----ccccccccccc---cch--hhhc---------------cccccccccccccceeeccccccccchhHH
Confidence 99998653 00000000000 000 0000 000000011235678999999999999999
Q ss_pred HHhhccCCcEeEeeC
Q psy16116 596 DIFFVGQQDSFVHKV 610 (612)
Q Consensus 596 kefFs~~gdI~~~ki 610 (612)
...|..++++....+
T Consensus 243 ~~~~~~~~~~~~~~~ 257 (306)
T COG0724 243 ADLFKSRGDIVRASL 257 (306)
T ss_pred HHhccccccceeeec
Confidence 999999988855443
No 50
>KOG0125|consensus
Probab=99.34 E-value=1.9e-12 Score=133.84 Aligned_cols=79 Identities=24% Similarity=0.350 Sum_probs=71.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI 516 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I 516 (612)
..+|+|.|+||...|.||+..|++|| .|+| |+|+.++.| |||||||+|++.+||++|-+ +|+..+.||+|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG----~Vld----VEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFG----KVLD----VEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhC----ceee----EEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 35699999999999999999999999 5665 999998877 89999999999999999995 79999999999
Q ss_pred EEEecchHH
Q psy16116 517 ELFRSTTAE 525 (612)
Q Consensus 517 eV~~as~~e 525 (612)
||..++..-
T Consensus 167 EVn~ATarV 175 (376)
T KOG0125|consen 167 EVNNATARV 175 (376)
T ss_pred EEeccchhh
Confidence 999987653
No 51
>KOG0144|consensus
Probab=99.31 E-value=3.2e-12 Score=135.81 Aligned_cols=115 Identities=14% Similarity=0.176 Sum_probs=92.8
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-h-CCcccCC
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-K-HKESIGI 513 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~-~~~~igg 513 (612)
+...+||+-+|..++|.|||++|++|| .+.+|.|++|+ +|.++|+|||.|.+.+||.+|+. + |...|-|
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg--------~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG 104 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYG--------NVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG 104 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhC--------ceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCC
Confidence 446699999999999999999999999 45789999998 79999999999999999999995 5 4455543
Q ss_pred --EEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCC
Q psy16116 514 --RYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEAL 591 (612)
Q Consensus 514 --R~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vT 591 (612)
..|.|+.++.+.. +. ...++|||+-|+-.+|
T Consensus 105 ~~~pvqvk~Ad~E~e----------------------------------r~-------------~~e~KLFvg~lsK~~t 137 (510)
T KOG0144|consen 105 MHHPVQVKYADGERE----------------------------------RI-------------VEERKLFVGMLSKQCT 137 (510)
T ss_pred CCcceeecccchhhh----------------------------------cc-------------ccchhhhhhhcccccc
Confidence 4577765542210 00 1345799999999999
Q ss_pred HHHHHHhhccCCcEe
Q psy16116 592 CILMDIFFVGQQDSF 606 (612)
Q Consensus 592 eeDLkefFs~~gdI~ 606 (612)
|.||+++|+.||.|.
T Consensus 138 e~evr~iFs~fG~Ie 152 (510)
T KOG0144|consen 138 ENEVREIFSRFGHIE 152 (510)
T ss_pred HHHHHHHHHhhCccc
Confidence 999999999998554
No 52
>KOG0124|consensus
Probab=99.29 E-value=2.2e-12 Score=134.43 Aligned_cols=126 Identities=17% Similarity=0.214 Sum_probs=102.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI 516 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I 516 (612)
++|||+.+.|...|+.||..|..|| .+++|.+..|+ +|+.||||||+|+-+|.|..|++ +|+..+|||.|
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFG--------PIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNi 185 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFG--------PIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNI 185 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCC--------CcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccc
Confidence 4699999999999999999999999 56889999998 89999999999999999999997 79999999999
Q ss_pred EEEecch-HHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116 517 ELFRSTT-AEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM 595 (612)
Q Consensus 517 eV~~as~-~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL 595 (612)
.|..-+. ......+.... + .......|||..+..+.+++||
T Consensus 186 KVgrPsNmpQAQpiID~vq----------------------------------e----eAk~fnRiYVaSvHpDLSe~Di 227 (544)
T KOG0124|consen 186 KVGRPSNMPQAQPIIDMVQ----------------------------------E----EAKKFNRIYVASVHPDLSETDI 227 (544)
T ss_pred cccCCCCCcccchHHHHHH----------------------------------H----HHHhhheEEeeecCCCccHHHH
Confidence 9964321 00000111000 0 0113457999999999999999
Q ss_pred HHhhccCCcEeEeeC
Q psy16116 596 DIFFVGQQDSFVHKV 610 (612)
Q Consensus 596 kefFs~~gdI~~~ki 610 (612)
+..|+.||+|..|+.
T Consensus 228 KSVFEAFG~I~~C~L 242 (544)
T KOG0124|consen 228 KSVFEAFGEIVKCQL 242 (544)
T ss_pred HHHHHhhcceeeEEe
Confidence 999999999999975
No 53
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.29 E-value=9.5e-12 Score=125.44 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=69.4
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI 516 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I 516 (612)
.+++|||+||++++|++||++||+.|| .++.|+|+.| ++.+|||||+|.++++++.||.++|..|.++.|
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G--------~I~~V~I~~D--~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I 73 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCG--------AIEHVEIIRS--GEYACTAYVTFKDAYALETAVLLSGATIVDQRV 73 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcC--------CeEEEEEecC--CCcceEEEEEECCHHHHHHHHhcCCCeeCCceE
Confidence 457899999999999999999999999 4577998876 567799999999999999999999999999999
Q ss_pred EEEecc
Q psy16116 517 ELFRST 522 (612)
Q Consensus 517 eV~~as 522 (612)
.|....
T Consensus 74 ~It~~~ 79 (243)
T PLN03121 74 CITRWG 79 (243)
T ss_pred EEEeCc
Confidence 998865
No 54
>KOG0105|consensus
Probab=99.25 E-value=8.3e-11 Score=113.57 Aligned_cols=157 Identities=16% Similarity=0.118 Sum_probs=104.3
Q ss_pred cccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 339 ALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 339 ~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+.+++|+|||-+.-+.++.++|.. +.+.+|.+. ++.| .-+||||+|++..||+.|+. +++..++|-.++|.....-
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK-~r~g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELK-NRPG-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEec-cCCC-CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 345566777766555555554443 347777763 3222 45799999999999999997 8999999999999665432
Q ss_pred chhh-ccCC--------CCc-chhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCc
Q psy16116 417 DFIN-VAGG--------NNN-EAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKA 486 (612)
Q Consensus 417 e~~~-~~g~--------~~~-e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~Grs 486 (612)
.... ..++ ... ......++...+.|.|+|||.+.+|+||++...+.| .|. -..+.+
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaG----dvC----fadv~r------ 149 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAG----DVC----FADVQR------ 149 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhC----Cee----eeeeec------
Confidence 1100 0000 000 000111234678899999999999999999999999 221 122222
Q ss_pred eeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116 487 TGDAFVLFEKEEEADKALS-KHKESI 511 (612)
Q Consensus 487 kG~AFV~F~s~edA~kAL~-~~~~~i 511 (612)
-|.+.|+|.+.||.+-|+. ++.+.+
T Consensus 150 Dg~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 150 DGVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred ccceeeeeeehhhHHHHHHhhccccc
Confidence 2589999999999999996 454444
No 55
>KOG0146|consensus
Probab=99.25 E-value=2.2e-11 Score=122.97 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=67.7
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI 513 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg 513 (612)
.+++.|||-.||.+..+.||.+.|-.|| .|+ +.++..|+ ++.+|.||||.|++..+++.||. +||-.||-
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFG----hiv----SaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM 354 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFG----HIV----SAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM 354 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhcccc----cee----eeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhh
Confidence 3678999999999999999999999999 453 57777787 88999999999999999999995 89999997
Q ss_pred EEEEEEe
Q psy16116 514 RYIELFR 520 (612)
Q Consensus 514 R~IeV~~ 520 (612)
++++|..
T Consensus 355 KRLKVQL 361 (371)
T KOG0146|consen 355 KRLKVQL 361 (371)
T ss_pred hhhhhhh
Confidence 7776654
No 56
>smart00362 RRM_2 RNA recognition motif.
Probab=99.23 E-value=4.8e-11 Score=94.60 Aligned_cols=70 Identities=31% Similarity=0.437 Sum_probs=63.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEE
Q psy16116 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIEL 518 (612)
Q Consensus 440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV 518 (612)
+|+|+|||..+++++|+++|+.+| .+..+.+..+. |.++|+|||+|.+.++|++|++ +++..++|+.|+|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g--------~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFG--------PIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcC--------CEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 389999999999999999999999 44568888776 8899999999999999999997 5889999999887
No 57
>KOG4212|consensus
Probab=99.19 E-value=2.3e-10 Score=121.89 Aligned_cols=84 Identities=23% Similarity=0.276 Sum_probs=74.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI 516 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I 516 (612)
.+.+||.|+||++.|+|||++|++.. .+++-|.+..|.+||+||.|.|+|+++|.++||++ ++++.+.||.|
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekv-------Gev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l 116 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKV-------GEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGREL 116 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhc-------CceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceE
Confidence 35599999999999999999998533 26788999999999999999999999999999998 69999999999
Q ss_pred EEEecchHHHHH
Q psy16116 517 ELFRSTTAEVQQ 528 (612)
Q Consensus 517 eV~~as~~e~~~ 528 (612)
.|+....++..+
T Consensus 117 ~vKEd~d~q~~~ 128 (608)
T KOG4212|consen 117 VVKEDHDEQRDQ 128 (608)
T ss_pred EEeccCchhhhh
Confidence 999887665444
No 58
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.16 E-value=2.3e-10 Score=91.14 Aligned_cols=72 Identities=32% Similarity=0.430 Sum_probs=65.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEE
Q psy16116 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIEL 518 (612)
Q Consensus 440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV 518 (612)
+|+|+|||+.+++++|+++|+.+| .+..+.+..+..++.+|+|||+|.+.++|..|++ +++..++|+.+.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g--------~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v 72 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFG--------KVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRV 72 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcC--------CEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 389999999999999999999999 4567899888877889999999999999999997 5888899999988
Q ss_pred E
Q psy16116 519 F 519 (612)
Q Consensus 519 ~ 519 (612)
.
T Consensus 73 ~ 73 (74)
T cd00590 73 E 73 (74)
T ss_pred e
Confidence 5
No 59
>KOG0109|consensus
Probab=99.15 E-value=5.2e-11 Score=121.65 Aligned_cols=107 Identities=16% Similarity=0.131 Sum_probs=92.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEE
Q psy16116 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIEL 518 (612)
Q Consensus 440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV 518 (612)
.|||+|||-.+++.+|+.+|+.|| + +.++.|++ -||||..+++..++.||. +|+..|+|..|.|
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~yg----k----VlECDIvK-------NYgFVHiEdktaaedairNLhgYtLhg~nInV 68 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYG----K----VLECDIVK-------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINV 68 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhC----c----eEeeeeec-------ccceEEeecccccHHHHhhcccceecceEEEE
Confidence 499999999999999999999999 3 44577774 399999999999999997 8999999999999
Q ss_pred EecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHHHHh
Q psy16116 519 FRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDIF 598 (612)
Q Consensus 519 ~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDLkef 598 (612)
..++.+ ++..++|+|.||.+.||.++|++.
T Consensus 69 eaSksK--------------------------------------------------sk~stkl~vgNis~tctn~ElRa~ 98 (346)
T KOG0109|consen 69 EASKSK--------------------------------------------------SKASTKLHVGNISPTCTNQELRAK 98 (346)
T ss_pred Eecccc--------------------------------------------------CCCccccccCCCCccccCHHHhhh
Confidence 764321 013467999999999999999999
Q ss_pred hccCCcEeEeeCC
Q psy16116 599 FVGQQDSFVHKVP 611 (612)
Q Consensus 599 Fs~~gdI~~~kip 611 (612)
|..||.+.-|+|=
T Consensus 99 fe~ygpviecdiv 111 (346)
T KOG0109|consen 99 FEKYGPVIECDIV 111 (346)
T ss_pred hcccCCceeeeee
Confidence 9999998888773
No 60
>smart00360 RRM RNA recognition motif.
Probab=99.14 E-value=1.9e-10 Score=90.68 Aligned_cols=68 Identities=32% Similarity=0.469 Sum_probs=61.1
Q ss_pred EeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEE
Q psy16116 443 MRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIEL 518 (612)
Q Consensus 443 V~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV 518 (612)
|+|||+++++++|+++|+.+| .+..+.+..+. +++++|+|||+|.+.++|.+|++ +++..++|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g--------~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFG--------KIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhC--------CEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 579999999999999999999 44668888876 58999999999999999999996 6889999999887
No 61
>KOG0122|consensus
Probab=99.12 E-value=1.7e-10 Score=115.55 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=72.8
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI 513 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg 513 (612)
.+..+|+|.||+.+++|+||+++|..|| .+.+|.|.+|+ +|.+||||||.|.+.+||.+||+ +||.=+++
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg--------~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~ 258 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFG--------PITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN 258 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccC--------ccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce
Confidence 4668899999999999999999999999 56789999997 89999999999999999999996 79998888
Q ss_pred EEEEEEecch
Q psy16116 514 RYIELFRSTT 523 (612)
Q Consensus 514 R~IeV~~as~ 523 (612)
--++|..+.+
T Consensus 259 LILrvEwskP 268 (270)
T KOG0122|consen 259 LILRVEWSKP 268 (270)
T ss_pred EEEEEEecCC
Confidence 8889987754
No 62
>KOG0105|consensus
Probab=99.12 E-value=6.4e-10 Score=107.52 Aligned_cols=140 Identities=15% Similarity=0.102 Sum_probs=95.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI 516 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I 516 (612)
.+.|+|+|||-++.+.||.++|.+|| .|+ .|.+- ..-..-.||||+|++..||+.||. .|+..++|..+
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg----~i~----~ieLK--~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rL 75 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYG----RIR----EIELK--NRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRL 75 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhc----ceE----EEEec--cCCCCCCeeEEEecCccchhhhhhcccccccCcceE
Confidence 46799999999999999999999999 453 35542 222356899999999999999997 79999999999
Q ss_pred EEEecchHHHHHHhhhhc-CCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116 517 ELFRSTTAEVQQVLNKTM-ELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM 595 (612)
Q Consensus 517 eV~~as~~e~~~~~~~~~-~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL 595 (612)
+|....-- +.. .+...+ ...+++ +. +.. ..+.| . +......|.|.+||.+.+.+||
T Consensus 76 RVEfprgg-------r~s~~~~G~y--~gggrg--Gg-g~g--g~rgp-----p----srrSe~RVvVsGLp~SgSWQDL 132 (241)
T KOG0105|consen 76 RVEFPRGG-------RSSSDRRGSY--SGGGRG--GG-GGG--GRRGP-----P----SRRSEYRVVVSGLPPSGSWQDL 132 (241)
T ss_pred EEEeccCC-------Cccccccccc--CCCCCC--CC-CCC--cccCC-----c----ccccceeEEEecCCCCCchHHH
Confidence 99865311 110 000000 000010 00 000 01111 0 1124467999999999999999
Q ss_pred HHhhccCCcEeEeeC
Q psy16116 596 DIFFVGQQDSFVHKV 610 (612)
Q Consensus 596 kefFs~~gdI~~~ki 610 (612)
+.+...-+|+.+..+
T Consensus 133 KDHmReaGdvCfadv 147 (241)
T KOG0105|consen 133 KDHMREAGDVCFADV 147 (241)
T ss_pred HHHHHhhCCeeeeee
Confidence 999999999887665
No 63
>KOG0106|consensus
Probab=99.11 E-value=1.6e-10 Score=115.35 Aligned_cols=162 Identities=21% Similarity=0.263 Sum_probs=111.7
Q ss_pred cEeecCCCCCCCcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCc
Q psy16116 327 TVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDK 405 (612)
Q Consensus 327 tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Igg 405 (612)
.+||++++...++ .++|.||++++. +.+|.|. .||+||+|.+.-||+.|+- .++..|++
T Consensus 3 rv~vg~~~~~~~~----------~d~E~~f~~yg~---~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~ 62 (216)
T KOG0106|consen 3 RVYIGRLPYRARE----------RDVERFFKGYGK---IPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCG 62 (216)
T ss_pred ceeecccCCccch----------hHHHHHHhhccc---cccceee-------cccceeccCchhhhhcccchhcCceecc
Confidence 4565555555444 777777777775 5566662 4799999999999999995 88888877
Q ss_pred eEEEEeccCccchhh--ccCCCCcc-hhhhc-cCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeC
Q psy16116 406 RYIEVTKANGEDFIN--VAGGNNNE-AQAFL-TRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKK 481 (612)
Q Consensus 406 R~IeV~~s~~~e~~~--~~g~~~~e-~~~~~-~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d 481 (612)
-.+.|.......-.. ..++.... ..... ..-..+.++|.+++-.+.++||.+.|..+|. + ....+
T Consensus 63 e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~----~----~~~~~--- 131 (216)
T KOG0106|consen 63 ERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGE----V----TYVDA--- 131 (216)
T ss_pred eeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCC----C----chhhh---
Confidence 665554443221111 01110000 11111 1235688999999999999999999999992 1 11111
Q ss_pred CCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecch
Q psy16116 482 PDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTT 523 (612)
Q Consensus 482 ~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~ 523 (612)
.++++||+|++++++.+|++ +++..+.++.|.+.....
T Consensus 132 ----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~~ 170 (216)
T KOG0106|consen 132 ----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNSR 170 (216)
T ss_pred ----hccccceeehhhhhhhhcchhccchhhcCceeeecccCc
Confidence 67899999999999999997 699999999999955543
No 64
>PLN03213 repressor of silencing 3; Provisional
Probab=99.08 E-value=4.4e-10 Score=121.17 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=70.0
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCH--HHHHHHHH-hCCcccCC
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKE--EEADKALS-KHKESIGI 513 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~--edA~kAL~-~~~~~igg 513 (612)
...+|||+||+|+++++||++.|..|| .+.+|.|+ ..+| ||||||+|.+. +++.+||+ +||..+.|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFG--------sVkdVEIp-RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKG 77 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMG--------TVDAVEFV-RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKG 77 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcC--------CeeEEEEe-cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecC
Confidence 346799999999999999999999999 56789998 4467 89999999987 78999996 89999999
Q ss_pred EEEEEEecchHHHH
Q psy16116 514 RYIELFRSTTAEVQ 527 (612)
Q Consensus 514 R~IeV~~as~~e~~ 527 (612)
|.|+|..+.+.=+.
T Consensus 78 R~LKVNKAKP~YLe 91 (759)
T PLN03213 78 GRLRLEKAKEHYLA 91 (759)
T ss_pred ceeEEeeccHHHHH
Confidence 99999999765433
No 65
>KOG0125|consensus
Probab=99.04 E-value=1.1e-09 Score=113.70 Aligned_cols=75 Identities=21% Similarity=0.216 Sum_probs=63.4
Q ss_pred cceecCCCHHHHHhhHhh-cccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPG-YEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fke-ff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
++.|.||||.-=+-||+. |++.+.|.+|.||.+.+| |||||||+|++.+||++|-+ +|+..+.||.|||..++.+
T Consensus 98 RLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 98 RLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred eeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 677899999866666664 333356899999999887 99999999999999999996 8999999999999888764
No 66
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.02 E-value=5.8e-10 Score=105.44 Aligned_cols=76 Identities=16% Similarity=0.134 Sum_probs=60.6
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+||+++.++++|+++|.. +.+.+|+|+.++ +|+++|||||+|++.|+|++||+ +++..|+||.|+|..+..+
T Consensus 36 ~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~ 114 (144)
T PLN03134 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114 (144)
T ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcC
Confidence 3446666666666666665544 458899998886 58999999999999999999997 7999999999999877543
No 67
>KOG0113|consensus
Probab=99.01 E-value=8.5e-10 Score=113.23 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=72.8
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
.-.||||.-|+++++|.+|+..|+.|| .|+.|+|+.|. +|+++|||||+|+++-+...|.+ -++..|+||
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG--------~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr 171 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYG--------PIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR 171 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcC--------cceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc
Confidence 346899999999999999999999999 56899999996 99999999999999999999997 599999999
Q ss_pred EEEEEecchH
Q psy16116 515 YIELFRSTTA 524 (612)
Q Consensus 515 ~IeV~~as~~ 524 (612)
.|-|..-.-.
T Consensus 172 ri~VDvERgR 181 (335)
T KOG0113|consen 172 RILVDVERGR 181 (335)
T ss_pred EEEEEecccc
Confidence 9999875433
No 68
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.01 E-value=5.9e-10 Score=90.99 Aligned_cols=68 Identities=22% Similarity=0.189 Sum_probs=56.5
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhC-CCccCceEEE
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRH-KHHIDKRYIE 409 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~n-g~~IggR~Ie 409 (612)
|+|+|||.+..+++|+++|.. +.+..|++..+++|+++|+|||+|.|.++|++|++.+ +..++||.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 457888888888888877765 4588999999988999999999999999999999854 4899999875
No 69
>KOG4207|consensus
Probab=98.97 E-value=6.6e-10 Score=109.02 Aligned_cols=77 Identities=19% Similarity=0.290 Sum_probs=70.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
-..|.|-||-|.++-+||+.+|++|| .|. .|.|+.|+ ++.++|||||.|....||+.||+ +||..++||.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG----~vg----DVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRe 84 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYG----RVG----DVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRE 84 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhC----ccc----ceecccccccccccceeEEEeeecchHHHHHHhhcceeeccce
Confidence 35699999999999999999999999 554 49999998 78899999999999999999996 8999999999
Q ss_pred EEEEecc
Q psy16116 516 IELFRST 522 (612)
Q Consensus 516 IeV~~as 522 (612)
|.|..+.
T Consensus 85 lrVq~ar 91 (256)
T KOG4207|consen 85 LRVQMAR 91 (256)
T ss_pred eeehhhh
Confidence 9998664
No 70
>KOG0108|consensus
Probab=98.97 E-value=1.3e-09 Score=119.41 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=71.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI 516 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I 516 (612)
+.|||+|+||+++|++|.++|++.| .+.+++++.|+ +|++|||||++|.+.+++.+|++ +|+.+++||.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g--------~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVG--------PVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKL 90 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccC--------ccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceE
Confidence 6799999999999999999999999 44569999998 79999999999999999999997 79999999999
Q ss_pred EEEecch
Q psy16116 517 ELFRSTT 523 (612)
Q Consensus 517 eV~~as~ 523 (612)
+|..+..
T Consensus 91 ~v~~~~~ 97 (435)
T KOG0108|consen 91 RVNYASN 97 (435)
T ss_pred Eeecccc
Confidence 9998853
No 71
>KOG0121|consensus
Probab=98.96 E-value=1.2e-09 Score=100.14 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=68.1
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
.+.+|||+||+|.++|+.|.++|+.+| .+..|.+-.|+ +-.+-|||||+|-+.+||+.||+ .++..|+.|
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG--------~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr 106 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCG--------DIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDR 106 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhcc--------chheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccc
Confidence 357899999999999999999999999 45667776777 45689999999999999999997 699999999
Q ss_pred EEEEEec
Q psy16116 515 YIELFRS 521 (612)
Q Consensus 515 ~IeV~~a 521 (612)
.|.|...
T Consensus 107 ~ir~D~D 113 (153)
T KOG0121|consen 107 PIRIDWD 113 (153)
T ss_pred ceeeecc
Confidence 9999764
No 72
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.96 E-value=8.1e-10 Score=89.01 Aligned_cols=67 Identities=19% Similarity=0.256 Sum_probs=53.7
Q ss_pred eecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEE
Q psy16116 343 LVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIE 409 (612)
Q Consensus 343 lV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~Ie 409 (612)
+|+|||.+.++++|+++|.. +.+..+.+..+..|+++|+|||+|++.++|++|++ +++..++|+.|+
T Consensus 2 ~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 2 YVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred EEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 45666666555555555544 44788899888788999999999999999999998 899999999874
No 73
>KOG0226|consensus
Probab=98.92 E-value=1.9e-08 Score=101.50 Aligned_cols=139 Identities=18% Similarity=0.160 Sum_probs=106.5
Q ss_pred EEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhhccCCCCcchhhhccCCcccEEEEeCCC
Q psy16116 369 ALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLP 447 (612)
Q Consensus 369 ~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP 447 (612)
.++++..+.-++++|+.|.......++-. .++++++.+.|+....+. |....-.. -...++.||.+.|.
T Consensus 130 k~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts--wedPsl~e--------w~~~DfRIfcgdlg 199 (290)
T KOG0226|consen 130 KLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS--WEDPSLAE--------WDEDDFRIFCGDLG 199 (290)
T ss_pred hhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc--cCCccccc--------Cccccceeeccccc
Confidence 34556667788999999988877777774 677888888766644332 21110000 12345789999999
Q ss_pred CCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCcccCCEEEEEEecchHH
Q psy16116 448 YECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKAL-SKHKESIGIRYIELFRSTTAE 525 (612)
Q Consensus 448 ~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL-~~~~~~iggR~IeV~~as~~e 525 (612)
-+++++.|-..|++|- .-...++++|. +|+++|||||.|.+.+|+.+|+ ++++.++|.|.|.++.+.-++
T Consensus 200 Nevnd~vl~raf~Kfp--------sf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 200 NEVNDDVLARAFKKFP--------SFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred ccccHHHHHHHHHhcc--------chhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 9999999999999986 33457777775 8999999999999999999999 589999999999988776555
No 74
>KOG0114|consensus
Probab=98.90 E-value=8.8e-09 Score=91.49 Aligned_cols=83 Identities=20% Similarity=0.342 Sum_probs=69.9
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
..+.|||+||||++|.++..++|.+|| . +..|+|- .+..-+|-|||.+++-.||++|++ +++..+.+|+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg----~----IrQIRiG--~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ry 86 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYG----T----IRQIRIG--NTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRY 86 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhccc----c----eEEEEec--CccCcCceEEEEehHhhhHHHHHHHhcccccCCce
Confidence 457899999999999999999999999 3 4557764 344568999999999999999997 7999999999
Q ss_pred EEEEecchHHHHHH
Q psy16116 516 IELFRSTTAEVQQV 529 (612)
Q Consensus 516 IeV~~as~~e~~~~ 529 (612)
+.|..-...+..+.
T Consensus 87 l~vlyyq~~~~~~~ 100 (124)
T KOG0114|consen 87 LVVLYYQPEDAFKL 100 (124)
T ss_pred EEEEecCHHHHHHH
Confidence 99988866655443
No 75
>smart00361 RRM_1 RNA recognition motif.
Probab=98.89 E-value=6.3e-09 Score=86.13 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=50.9
Q ss_pred CHHHHHHHHh----cCCCCccccccCceeEE-EeeCC-C--CCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEE
Q psy16116 451 TAKQVIDFFE----AGTENSCNVMDGEEGVL-FVKKP-D--GKATGDAFVLFEKEEEADKALS-KHKESIGIRYIEL 518 (612)
Q Consensus 451 te~dLrefF~----~~Gi~~~~Ivd~v~~I~-i~~d~-~--GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV 518 (612)
.++||+++|+ .|| .+.+|. |+.++ + |+++|||||+|.+.++|.+|++ +|+..++||.|.+
T Consensus 1 ~~~~l~~~~~~~~~~fG--------~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 1 KDEDFEREFSEEEEYFG--------EVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred CchhHHHHHHHHHHhcC--------CeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 3689999999 999 345564 55554 4 8999999999999999999996 7999999999876
No 76
>KOG0126|consensus
Probab=98.87 E-value=2.9e-10 Score=109.61 Aligned_cols=77 Identities=25% Similarity=0.367 Sum_probs=70.4
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
.+..|||+||||..||.||.-.|++|| +||| |.+++|. +|+|+||||..|++...--.|+. +||-.|.||
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyG----e~vd----inLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR 105 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYG----EIVD----INLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR 105 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccC----ceEE----EEEEecCCCCcccceEEEEecCccceEEEEeccCCceecce
Confidence 346799999999999999999999999 5655 9999997 89999999999999999999995 899999999
Q ss_pred EEEEEec
Q psy16116 515 YIELFRS 521 (612)
Q Consensus 515 ~IeV~~a 521 (612)
.|+|.-.
T Consensus 106 tirVDHv 112 (219)
T KOG0126|consen 106 TIRVDHV 112 (219)
T ss_pred eEEeeec
Confidence 9999876
No 77
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.87 E-value=1.1e-08 Score=100.33 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=101.7
Q ss_pred ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc-
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG- 415 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~- 415 (612)
.+++|+||+++.++++|+++|.. +.+..|++..++ .|+++|||||+|.+.++|..|++ +++..+.||.|.|.....
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~ 195 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPA 195 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccc
Confidence 45667777776666666665554 447789998885 79999999999999999999998 667999999999987542
Q ss_pred -cchhhccC--CCC--cc-hh-hhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCC-Cce
Q psy16116 416 -EDFINVAG--GNN--NE-AQ-AFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDG-KAT 487 (612)
Q Consensus 416 -~e~~~~~g--~~~--~e-~~-~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~G-rsk 487 (612)
........ ... .. .. ..........+++++++..++..++...|..+| .+ ..+.+.....+ ...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~ 267 (306)
T COG0724 196 SQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRG----DI----VRASLPPSKDGKIPK 267 (306)
T ss_pred cccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccc----cc----eeeeccCCCCCcccc
Confidence 11100000 000 00 00 001123567799999999999999999999998 22 23444433333 244
Q ss_pred eEEEEEeCCHHHHHHHH
Q psy16116 488 GDAFVLFEKEEEADKAL 504 (612)
Q Consensus 488 G~AFV~F~s~edA~kAL 504 (612)
++.++.+....+.....
T Consensus 268 ~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 268 SRSFVGNEASKDALESN 284 (306)
T ss_pred cccccchhHHHhhhhhh
Confidence 44444444444444443
No 78
>KOG0149|consensus
Probab=98.83 E-value=3.2e-09 Score=106.18 Aligned_cols=74 Identities=22% Similarity=0.157 Sum_probs=59.1
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccC
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~ 414 (612)
+|||+||++++..+.+++||+. +.|.+.+++.|+ .|||+|||||+|++.|.|.+|++.-+-.|+||...+..+.
T Consensus 14 KifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 14 KIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 4567777777666666665554 457788888887 5999999999999999999999988889999988776554
No 79
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.81 E-value=6.7e-09 Score=106.39 Aligned_cols=73 Identities=21% Similarity=0.129 Sum_probs=60.7
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~ 415 (612)
+|+|+||+++.++++|++||.. |.+.+|.|+.+.. ++|||||+|+++++|+.||.+++..|+||.|+|..+..
T Consensus 6 tVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 6 TVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 4567777777777777777765 4589999987753 67999999999999999999999999999999987753
No 80
>KOG0111|consensus
Probab=98.72 E-value=7.6e-09 Score=102.41 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=73.8
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
..++|||+||...++|.-|...|-.|| .| ..|.++.|. ++|.||||||+|.-.|||..||. ||..++.||
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFG----DI----~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Gr 80 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFG----DI----KDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGR 80 (298)
T ss_pred cceeEEeccchHHHHHHHHHhcccccc----ch----hhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcce
Confidence 347899999999999999999999999 45 459999996 79999999999999999999995 899999999
Q ss_pred EEEEEecchHHH
Q psy16116 515 YIELFRSTTAEV 526 (612)
Q Consensus 515 ~IeV~~as~~e~ 526 (612)
.|+|..+.+...
T Consensus 81 tirVN~AkP~ki 92 (298)
T KOG0111|consen 81 TIRVNLAKPEKI 92 (298)
T ss_pred eEEEeecCCccc
Confidence 999999876543
No 81
>KOG0107|consensus
Probab=98.70 E-value=3.8e-08 Score=94.75 Aligned_cols=75 Identities=21% Similarity=0.198 Sum_probs=64.4
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
....|||+||+..+++.||...|..|| ...+|-|.. ++-|||||+|++..||+.|+. +|+..|.|..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG--------~lrsvWvAr----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r 76 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYG--------PLRSVWVAR----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSR 76 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcC--------cceeEEEee----cCCCceEEeccCcccHHHHHhhcCCccccCce
Confidence 346799999999999999999999999 234455543 467899999999999999995 8999999999
Q ss_pred EEEEecch
Q psy16116 516 IELFRSTT 523 (612)
Q Consensus 516 IeV~~as~ 523 (612)
|.|..++-
T Consensus 77 ~rVE~S~G 84 (195)
T KOG0107|consen 77 IRVELSTG 84 (195)
T ss_pred EEEEeecC
Confidence 99988753
No 82
>KOG1548|consensus
Probab=98.70 E-value=3e-07 Score=96.35 Aligned_cols=170 Identities=15% Similarity=0.199 Sum_probs=114.6
Q ss_pred ceecCCCHHH----HHhhHhhccccc-----CeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEe
Q psy16116 342 PLVQNIWLSL----LLNTIPGYEQVL-----GLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVT 411 (612)
Q Consensus 342 vlV~nLp~~~----~e~~fkeff~~~-----~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~ 411 (612)
|+|.|||.+. ..++|+.|+.+. +.--|+|-++.+|.-+|-|.+.|--.|+++.|++ ++...+.|+.|+|.
T Consensus 137 VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVe 216 (382)
T KOG1548|consen 137 VYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVE 216 (382)
T ss_pred EEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEe
Confidence 4455555554 455555555431 1224778888899999999999999999999998 78899999999998
Q ss_pred ccCcc---chhhcc--C-CCCcchh----------------hhccCCcccEEEEeCCC----CCCC-------HHHHHHH
Q psy16116 412 KANGE---DFINVA--G-GNNNEAQ----------------AFLTRGAQVIIRMRGLP----YECT-------AKQVIDF 458 (612)
Q Consensus 412 ~s~~~---e~~~~~--g-~~~~e~~----------------~~~~~~~~~~VfV~nLP----~s~t-------e~dLref 458 (612)
++.-+ ++.-.. . .....++ .........+|.++|+= +..+ .+||++=
T Consensus 217 rAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~ee 296 (382)
T KOG1548|consen 217 RAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEE 296 (382)
T ss_pred hhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHH
Confidence 77421 111000 0 0000000 00011346889999973 3344 3455566
Q ss_pred HhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecc
Q psy16116 459 FEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRST 522 (612)
Q Consensus 459 F~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as 522 (612)
-++|| .+.+|.|. | .-+.|.+-|.|.+.++|+.+++ |+|.+++||.|.-+...
T Consensus 297 c~K~G--------~v~~vvv~-d--~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 297 CEKFG--------QVRKVVVY-D--RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHhC--------CcceEEEe-c--cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 78888 23456554 3 3467899999999999999997 79999999999877653
No 83
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.70 E-value=2.3e-08 Score=101.22 Aligned_cols=73 Identities=16% Similarity=0.070 Sum_probs=62.5
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~ 415 (612)
+|+|+||+++.++++|++||.. |.|.+|+|+++ ++.+|||||+|+++++|+.||.++|..|.++.|.|.....
T Consensus 7 TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 7 TAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 5668888888888888887776 56899999876 5677999999999999999999999999999999977653
No 84
>KOG0128|consensus
Probab=98.69 E-value=4.6e-09 Score=119.72 Aligned_cols=146 Identities=17% Similarity=0.174 Sum_probs=117.8
Q ss_pred CCcccceecCCCHHHHHhhHhhcccc-cCeeeEEEe-eCCCCCCcceEEEEeCCHHHHHHHHHhC-CCccCceEEEEecc
Q psy16116 337 PVALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALC-LSAFGRRNGEAIVRFIDQEHRDMALKRH-KHHIDKRYIEVTKA 413 (612)
Q Consensus 337 ~~~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii-~d~~GrsrG~AFVeF~S~EdA~kAL~~n-g~~IggR~IeV~~s 413 (612)
.+.+.+|+.||+....+.+++..|.. +.+..+.+. ...+|+.+|+|||+|.+++++.+|+..+ ++.++.
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK-------- 736 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK-------- 736 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh--------
Confidence 45677889999999988888876654 333333333 2336899999999999999999999854 444331
Q ss_pred CccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEE
Q psy16116 414 NGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVL 493 (612)
Q Consensus 414 ~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~ 493 (612)
..|+|+|.||.+|+++++.+|++.| .+.+.+++..+.|+.+|-|||.
T Consensus 737 -------------------------~~v~i~g~pf~gt~e~~k~l~~~~g--------n~~~~~~vt~r~gkpkg~a~v~ 783 (881)
T KOG0128|consen 737 -------------------------ISVAISGPPFQGTKEELKSLASKTG--------NVTSLRLVTVRAGKPKGKARVD 783 (881)
T ss_pred -------------------------hhhheeCCCCCCchHHHHhhccccC--------Cccccchhhhhccccccceecc
Confidence 2399999999999999999999999 3456888888999999999999
Q ss_pred eCCHHHHHHHHH-hCCcccCCEEEEEEecch
Q psy16116 494 FEKEEEADKALS-KHKESIGIRYIELFRSTT 523 (612)
Q Consensus 494 F~s~edA~kAL~-~~~~~iggR~IeV~~as~ 523 (612)
|.++.++.+++. .+...+..+.++|..+++
T Consensus 784 y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 784 YNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred CCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 999999999995 588888888888887765
No 85
>KOG0130|consensus
Probab=98.68 E-value=3.3e-08 Score=91.55 Aligned_cols=78 Identities=19% Similarity=0.166 Sum_probs=72.1
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
++..|||.|+...++|+||.+.|.+|| +++.|++-.|+ +|-.||||.|+|++.++|++|+. +|+..|-|.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyG--------eiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q 142 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYG--------EIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ 142 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcc--------cccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence 568899999999999999999999999 56789998886 89999999999999999999996 799999999
Q ss_pred EEEEEecc
Q psy16116 515 YIELFRST 522 (612)
Q Consensus 515 ~IeV~~as 522 (612)
.|+|..+-
T Consensus 143 ~v~VDw~F 150 (170)
T KOG0130|consen 143 NVSVDWCF 150 (170)
T ss_pred ceeEEEEE
Confidence 99999874
No 86
>KOG4206|consensus
Probab=98.68 E-value=2.5e-07 Score=92.37 Aligned_cols=156 Identities=12% Similarity=0.100 Sum_probs=98.0
Q ss_pred cEEEEeCCCCCCCHHHHHH----HHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116 439 VIIRMRGLPYECTAKQVID----FFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGI 513 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLre----fF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~igg 513 (612)
.+|||+||...+..++|+. +|+.|| +|+ .|..-++.+.||-|||.|++.+.|-.|+. ++|-.+-|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG----~il------dI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg 79 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFG----KIL------DISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYG 79 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhC----CeE------EEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccC
Confidence 4899999999999999999 999999 563 45555678999999999999999999996 79999999
Q ss_pred EEEEEEecchH-HHHHH-hhhh-cCCCCCCCCCCCCCC-CCCccccccc--ccCCCCCCCCcccccCCCcccEEEEcCCC
Q psy16116 514 RYIELFRSTTA-EVQQV-LNKT-MELPKNNSLTSSNNG-LSAQQPMLSH--LAQVPVPYLPQHIITSGTRKDCIRLRGLP 587 (612)
Q Consensus 514 R~IeV~~as~~-e~~~~-~~~~-~~~~~~~~~~~e~~~-~s~~~~~~~~--~s~~p~~~~~~~~~~~~~~~~~VfVrNLP 587 (612)
++++|..+..+ +.... .+.. ...++.........+ .....+.... ....|. .+ ..........+|+.|||
T Consensus 80 K~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~-p~---~~~~~ppn~ilf~~niP 155 (221)
T KOG4206|consen 80 KPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPP-PF---LAQMAPPNNILFLTNIP 155 (221)
T ss_pred chhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCC-Cc---cccCCCCceEEEEecCC
Confidence 99999988432 32211 1100 000000000000000 0000000000 001110 01 01224567789999999
Q ss_pred ccCCHHHHHHhhccC---CcEeEe
Q psy16116 588 YEALCILMDIFFVGQ---QDSFVH 608 (612)
Q Consensus 588 f~vTeeDLkefFs~~---gdI~~~ 608 (612)
-+++.+.|..+|..| .+|+++
T Consensus 156 ~es~~e~l~~lf~qf~g~keir~i 179 (221)
T KOG4206|consen 156 SESESEMLSDLFEQFPGFKEIRLI 179 (221)
T ss_pred cchhHHHHHHHHhhCcccceeEec
Confidence 999999888887765 566654
No 87
>KOG4206|consensus
Probab=98.68 E-value=5e-07 Score=90.18 Aligned_cols=172 Identities=18% Similarity=0.190 Sum_probs=114.3
Q ss_pred CCcEeecCCCCCCCcccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCc
Q psy16116 325 TPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHH 402 (612)
Q Consensus 325 ~~tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~ 402 (612)
..|+||.++..- +..++++.-|...|.. +.+.+|...+ ..+.||-|||.|.+.+.|-.|+. ++|-.
T Consensus 9 n~TlYInnLnek----------I~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfp 76 (221)
T KOG4206|consen 9 NGTLYINNLNEK----------IKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFP 76 (221)
T ss_pred CceEeehhcccc----------ccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCc
Confidence 347775553332 3336666644445544 3477777654 56899999999999999999996 78888
Q ss_pred cCceEEEEeccCccc-h-hhccC-------CCCcc------------hh-----------hh--ccCCcccEEEEeCCCC
Q psy16116 403 IDKRYIEVTKANGED-F-INVAG-------GNNNE------------AQ-----------AF--LTRGAQVIIRMRGLPY 448 (612)
Q Consensus 403 IggR~IeV~~s~~~e-~-~~~~g-------~~~~e------------~~-----------~~--~~~~~~~~VfV~nLP~ 448 (612)
+=|+.++|..+..+. . .+..+ ....+ .. .+ .......++|+.|||.
T Consensus 77 FygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~ 156 (221)
T KOG4206|consen 77 FYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPS 156 (221)
T ss_pred ccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCc
Confidence 889999887665431 1 11010 00000 00 00 0123567899999999
Q ss_pred CCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccC-CEEEEEEe
Q psy16116 449 ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIG-IRYIELFR 520 (612)
Q Consensus 449 s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~ig-gR~IeV~~ 520 (612)
+++.+.+..+|+.|. +-++|+++.. .+|.|||+|.+...+..|.. +.+-.|- ...+.|..
T Consensus 157 es~~e~l~~lf~qf~--------g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 157 ESESEMLSDLFEQFP--------GFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred chhHHHHHHHHhhCc--------ccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 999999999999998 5678888743 35799999999999888875 4554443 44555543
No 88
>KOG0147|consensus
Probab=98.65 E-value=1.8e-08 Score=110.56 Aligned_cols=134 Identities=13% Similarity=0.070 Sum_probs=102.5
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~ 515 (612)
..++||+--|+-.++..||.+||+..| .+..|+|+.|+ +++++|.|||+|-+.+.+-.||.+.|+.+.|-+
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~g--------kVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~p 249 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVG--------KVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVP 249 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhc--------CcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCce
Confidence 357788888999999999999999999 34559999998 789999999999999999999999999999999
Q ss_pred EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116 516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM 595 (612)
Q Consensus 516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL 595 (612)
|-|.....+... +...+. .-+..+ ... ....|||+||.|+.|+++|
T Consensus 250 v~vq~sEaeknr-~a~~s~--------a~~~k~-----------~~~--------------p~~rl~vgnLHfNite~~l 295 (549)
T KOG0147|consen 250 VIVQLSEAEKNR-AANASP--------ALQGKG-----------FTG--------------PMRRLYVGNLHFNITEDML 295 (549)
T ss_pred eEecccHHHHHH-HHhccc--------cccccc-----------ccc--------------chhhhhhcccccCchHHHH
Confidence 998765433221 111110 000000 000 1112999999999999999
Q ss_pred HHhhccCCcEeEeeCCC
Q psy16116 596 DIFFVGQQDSFVHKVPK 612 (612)
Q Consensus 596 kefFs~~gdI~~~kip~ 612 (612)
+..|+.||+|-.+..++
T Consensus 296 r~ifepfg~Ie~v~l~~ 312 (549)
T KOG0147|consen 296 RGIFEPFGKIENVQLTK 312 (549)
T ss_pred hhhccCcccceeeeecc
Confidence 99999999998876654
No 89
>smart00362 RRM_2 RNA recognition motif.
Probab=98.65 E-value=6.9e-08 Score=76.28 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=49.4
Q ss_pred eecCCCH----HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEE
Q psy16116 343 LVQNIWL----SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEV 410 (612)
Q Consensus 343 lV~nLp~----~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV 410 (612)
+++||+. ++++++|+.|+ .+..+.+..++ |.++|+|||+|.+.++|++|++ +++..++|+.|.|
T Consensus 3 ~i~~l~~~~~~~~l~~~~~~~g---~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 3 FVGNLPPDVTEEDLKELFSKFG---PIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred EEcCCCCcCCHHHHHHHHHhcC---CEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 3445544 45555555544 47788888776 8889999999999999999997 6778899998876
No 90
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.63 E-value=1.2e-07 Score=74.64 Aligned_cols=55 Identities=24% Similarity=0.269 Sum_probs=46.7
Q ss_pred HHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEec
Q psy16116 455 VIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRS 521 (612)
Q Consensus 455 LrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~a 521 (612)
|+++|+.|| .+.+|.+..+. +|+|||+|.+.++|++|++ +|+..++||.|+|..|
T Consensus 1 L~~~f~~fG--------~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFG--------EVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS---------EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcc--------cEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 689999999 45667776433 6999999999999999997 7999999999999764
No 91
>smart00360 RRM RNA recognition motif.
Probab=98.58 E-value=1.5e-07 Score=73.90 Aligned_cols=63 Identities=22% Similarity=0.301 Sum_probs=49.6
Q ss_pred cCCCHHHHHhhHhhcccccCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEE
Q psy16116 345 QNIWLSLLLNTIPGYEQVLGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEV 410 (612)
Q Consensus 345 ~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV 410 (612)
..++.+++.++|+.|+ .+..+.+..++. ++++|+|||+|.+.++|.+|++ +++..++|+.|.|
T Consensus 6 ~~~~~~~l~~~f~~~g---~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 6 PDVTEEELRELFSKFG---KIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred cccCHHHHHHHHHhhC---CEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 3344556666666555 377888888764 8899999999999999999997 6778889998876
No 92
>KOG0122|consensus
Probab=98.56 E-value=1.2e-07 Score=95.46 Aligned_cols=78 Identities=15% Similarity=0.065 Sum_probs=64.8
Q ss_pred CcccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116 338 VALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 338 ~~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~ 414 (612)
++.++-|.||+.+..|++|.++|.. +.+..|.+.+|+ +|.++|||||.|.+.+||.+||. +||.-+++=.++|.++.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 4555668888888888888876654 668899999998 59999999999999999999997 78888888888887665
Q ss_pred c
Q psy16116 415 G 415 (612)
Q Consensus 415 ~ 415 (612)
.
T Consensus 268 P 268 (270)
T KOG0122|consen 268 P 268 (270)
T ss_pred C
Confidence 3
No 93
>KOG1457|consensus
Probab=98.56 E-value=1.2e-06 Score=87.39 Aligned_cols=55 Identities=24% Similarity=0.327 Sum_probs=41.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEee--CCCCCceeEEEEEeCCHHHHHHHHH
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVK--KPDGKATGDAFVLFEKEEEADKALS 505 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~--d~~GrskG~AFV~F~s~edA~kAL~ 505 (612)
..+|||-||..+|+|++|+.+|+.|- + .++++ .+.|. -.|||+|++-+.|..|+.
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~--------g---f~~l~~~~~~g~--~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYP--------G---FHILKIRARGGM--PVAFADFEEIEQATDAMN 266 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCC--------C---ceEEEEecCCCc--ceEeecHHHHHHHHHHHH
Confidence 56799999999999999999999986 1 23332 33443 368888888888888774
No 94
>KOG4210|consensus
Probab=98.54 E-value=8.1e-08 Score=100.55 Aligned_cols=166 Identities=16% Similarity=0.109 Sum_probs=110.7
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEee-CCCCCCcceEEEEeCCHHHHHHHHHhCCC-ccCceEEEEeccCccch
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCL-SAFGRRNGEAIVRFIDQEHRDMALKRHKH-HIDKRYIEVTKANGEDF 418 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~-d~~GrsrG~AFVeF~S~EdA~kAL~~ng~-~IggR~IeV~~s~~~e~ 418 (612)
.+++++.+..-+.....++.. +...+..+.. .....++|+++|.|+..+.+..||...+. .+.++.++.-.......
T Consensus 91 ~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~ 170 (285)
T KOG4210|consen 91 FFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGL 170 (285)
T ss_pred ccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccccccc
Confidence 345555544444433333322 2233334433 33578999999999999999999998774 55555444422222110
Q ss_pred hhccCCCCcchhhhccCCcccEEE-EeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCC
Q psy16116 419 INVAGGNNNEAQAFLTRGAQVIIR-MRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEK 496 (612)
Q Consensus 419 ~~~~g~~~~e~~~~~~~~~~~~Vf-V~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s 496 (612)
. .. ........+...+++ |+||++++++++|+++|..+| .+..|+++.++ .|.++|||||.|.+
T Consensus 171 -~-~~----n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~--------~i~~~r~~~~~~s~~~kg~a~~~~~~ 236 (285)
T KOG4210|consen 171 -R-PK----NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSG--------EITSVRLPTDEESGDSKGFAYVDFSA 236 (285)
T ss_pred -c-cc----chhcccccCccccceeecccccccchHHHhhhccCcC--------cceeeccCCCCCccchhhhhhhhhhh
Confidence 0 00 000001122334455 999999999999999999998 45678888776 78999999999999
Q ss_pred HHHHHHHHHhCCcccCCEEEEEEec
Q psy16116 497 EEEADKALSKHKESIGIRYIELFRS 521 (612)
Q Consensus 497 ~edA~kAL~~~~~~iggR~IeV~~a 521 (612)
..+..+++......+++|.+.+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 237 GNSKKLALNDQTRSIGGRPLRLEED 261 (285)
T ss_pred chhHHHHhhcccCcccCcccccccC
Confidence 9999999976778899998887654
No 95
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.52 E-value=3.1e-07 Score=72.90 Aligned_cols=69 Identities=19% Similarity=0.182 Sum_probs=51.7
Q ss_pred eecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEe
Q psy16116 343 LVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVT 411 (612)
Q Consensus 343 lV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~ 411 (612)
+++|||....++++++++.. +.+..+.+..++.++.+|+|||+|.+.++|+.|++ .++..++|+.+.|.
T Consensus 3 ~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 3 FVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred EEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 35555554444444444333 45888999888878889999999999999999997 56777999988874
No 96
>smart00361 RRM_1 RNA recognition motif.
Probab=98.52 E-value=3.1e-07 Score=76.03 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=47.6
Q ss_pred HHHHhhHh-hcccccCeeeEE-EeeCC-C--CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEE
Q psy16116 350 SLLLNTIP-GYEQVLGLGGVA-LCLSA-F--GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEV 410 (612)
Q Consensus 350 ~~~e~~fk-eff~~~~v~~V~-ii~d~-~--GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV 410 (612)
++++++|+ +|...+.+..|. ++.++ + |+++|||||+|.+.+||.+|++ +|+..++||.|.+
T Consensus 3 ~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred hhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 56778887 222334577774 44443 4 8899999999999999999997 8999999999876
No 97
>KOG0128|consensus
Probab=98.47 E-value=2.2e-08 Score=114.38 Aligned_cols=178 Identities=16% Similarity=0.112 Sum_probs=124.8
Q ss_pred HHHhhHhhcccccCeeeEEEeeCCCCCCcc-eEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchhhccCCCCcch
Q psy16116 351 LLLNTIPGYEQVLGLGGVALCLSAFGRRNG-EAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNNEA 429 (612)
Q Consensus 351 ~~e~~fkeff~~~~v~~V~ii~d~~GrsrG-~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~~~~g~~~~e~ 429 (612)
..+..++.+.. +..|++-........+ ++++.++...+++.|+.-.+.-++++.+.|-.+..++......-.+.+.
T Consensus 588 ~~~~~~k~~~~---vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~ 664 (881)
T KOG0128|consen 588 IQRRQFKGEGN---VEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADAEEKEENFKVSPNEI 664 (881)
T ss_pred hhHHHhhcccc---cccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCchhhhhccCcCchHH
Confidence 33455555443 5555553322222334 8899999999999999988888999988776665544322211111111
Q ss_pred hhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEe-eCCCCCceeEEEEEeCCHHHHHHHHHhCC
Q psy16116 430 QAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFV-KKPDGKATGDAFVLFEKEEEADKALSKHK 508 (612)
Q Consensus 430 ~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~-~d~~GrskG~AFV~F~s~edA~kAL~~~~ 508 (612)
+ ...++||+||+..+.+.||..+|..+|. | +.+++. ...+|+.||.|||+|.+++++.+|+.++.
T Consensus 665 R------~~~~~fvsnl~~~~~~~dl~~~~~~~~~--~------e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d 730 (881)
T KOG0128|consen 665 R------DLIKIFVSNLSPKMSEEDLSERFSPSGT--I------EVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD 730 (881)
T ss_pred H------HHHHHHHhhcchhhcCchhhhhcCccch--h------hhHHHHHHhhccccccceeeEeecCCchhhhhhhhh
Confidence 1 2356999999999999999999999982 2 223333 33478999999999999999999998643
Q ss_pred cccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCc
Q psy16116 509 ESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPY 588 (612)
Q Consensus 509 ~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf 588 (612)
..+-| +..|+|+|+||
T Consensus 731 ~~~~g----------------------------------------------------------------K~~v~i~g~pf 746 (881)
T KOG0128|consen 731 SCFFG----------------------------------------------------------------KISVAISGPPF 746 (881)
T ss_pred hhhhh----------------------------------------------------------------hhhhheeCCCC
Confidence 32222 12489999999
Q ss_pred cCCHHHHHHhhccCCcEeEee
Q psy16116 589 EALCILMDIFFVGQQDSFVHK 609 (612)
Q Consensus 589 ~vTeeDLkefFs~~gdI~~~k 609 (612)
..|+++++.+|++.+.+..+.
T Consensus 747 ~gt~e~~k~l~~~~gn~~~~~ 767 (881)
T KOG0128|consen 747 QGTKEELKSLASKTGNVTSLR 767 (881)
T ss_pred CCchHHHHhhccccCCccccc
Confidence 999999999999998766553
No 98
>KOG1457|consensus
Probab=98.43 E-value=1.2e-06 Score=87.31 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=60.0
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CC-CceeEEEEEeCCHHHHHHHHH-hCCcccC
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DG-KATGDAFVLFEKEEEADKALS-KHKESIG 512 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~G-rskG~AFV~F~s~edA~kAL~-~~~~~ig 512 (612)
+.-++|||.|||-+++-.+|..+|+.|- +-++..|-+.. .+ -.+=+|||+|.+..+|..|+. +||-.++
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~--------GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFD 103 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFH--------GYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFD 103 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCC--------CccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeec
Confidence 4568999999999999999999999886 44556664433 22 256899999999999999995 6887776
Q ss_pred ---CEEEEEEec
Q psy16116 513 ---IRYIELFRS 521 (612)
Q Consensus 513 ---gR~IeV~~a 521 (612)
+..++|..+
T Consensus 104 pE~~stLhiElA 115 (284)
T KOG1457|consen 104 PETGSTLHIELA 115 (284)
T ss_pred cccCceeEeeeh
Confidence 344555444
No 99
>KOG0108|consensus
Probab=98.39 E-value=3.8e-07 Score=100.15 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=68.3
Q ss_pred ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+.|+|+|++|+..++.|.+.|.. +.+.+++++.|++ |+++||||++|.+.+++.+|++ +++..++||.++|.....
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 57889999999999999987765 6799999999985 8999999999999999999997 788999999999976654
No 100
>PLN03213 repressor of silencing 3; Provisional
Probab=98.37 E-value=4.2e-07 Score=98.65 Aligned_cols=73 Identities=11% Similarity=-0.015 Sum_probs=61.6
Q ss_pred ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCH--HHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQ--EHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~--EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
.++||+||+++.++++|+..|.. |.|.+|.|++. +| ||||||+|.+. +++++||+ +|+..++||.|+|..+..
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 46778888888888888876654 56999999843 56 89999999988 78999997 899999999999988865
No 101
>KOG4208|consensus
Probab=98.36 E-value=9e-07 Score=87.35 Aligned_cols=81 Identities=17% Similarity=0.230 Sum_probs=70.1
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
....++++.+|+-..+..|..+|..+| . .+..+++.+++ +|.++|||||+|+++|.|+-|-+ ||+..|++|
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~----g---~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFG----G---TVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcC----C---eeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 456799999999999999999999996 1 23556665654 89999999999999999999997 899999999
Q ss_pred EEEEEecchH
Q psy16116 515 YIELFRSTTA 524 (612)
Q Consensus 515 ~IeV~~as~~ 524 (612)
.+++....++
T Consensus 121 lL~c~vmppe 130 (214)
T KOG4208|consen 121 LLECHVMPPE 130 (214)
T ss_pred eeeeEEeCch
Confidence 9999888766
No 102
>KOG1190|consensus
Probab=98.34 E-value=1e-05 Score=86.63 Aligned_cols=229 Identities=15% Similarity=0.182 Sum_probs=136.3
Q ss_pred cccceecCCCH----HHHHhhHhhcccccCeeeEEEeeCCCCCCcce-EEEEeCCHHHHHHHHH-hCCCccCc--eEEEE
Q psy16116 339 ALCPLVQNIWL----SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGE-AIVRFIDQEHRDMALK-RHKHHIDK--RYIEV 410 (612)
Q Consensus 339 ~l~vlV~nLp~----~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~-AFVeF~S~EdA~kAL~-~ng~~Igg--R~IeV 410 (612)
=+++++.++-+ +.+-..|+.|+.. .+-|.+ .++.|| |.|.|.+.+.|+.|-. ++|+.|-+ ..++|
T Consensus 150 vLr~iie~m~ypVslDVLHqvFS~fG~V--lKIiTF-----~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrI 222 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDVLHQVFSKFGFV--LKIITF-----TKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRI 222 (492)
T ss_pred eEEEEeccceeeeEHHHHHHHHhhccee--EEEEEE-----ecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEe
Confidence 34566666655 5556666666541 222333 234565 8999999999999985 67766543 23454
Q ss_pred eccCc------------cchhhc---cC---------------CC------Ccc----h-----h--hhccCCcccEEEE
Q psy16116 411 TKANG------------EDFINV---AG---------------GN------NNE----A-----Q--AFLTRGAQVIIRM 443 (612)
Q Consensus 411 ~~s~~------------~e~~~~---~g---------------~~------~~e----~-----~--~~~~~~~~~~VfV 443 (612)
..+.- +++.+. .| +. ... . . .........+|.|
T Consensus 223 d~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllv 302 (492)
T KOG1190|consen 223 DFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLV 302 (492)
T ss_pred ehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEE
Confidence 33321 111110 01 00 000 0 0 0000012467888
Q ss_pred eCCC-CCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEec
Q psy16116 444 RGLP-YECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRS 521 (612)
Q Consensus 444 ~nLP-~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~a 521 (612)
.||- +.+|.+-|-.+|.-|| .+.+|+|.+++. --|.|.+.+...|+.|++ ++|+.+.|+.|+|..+
T Consensus 303 snln~~~VT~d~LftlFgvYG--------dVqRVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 303 SNLNEEAVTPDVLFTLFGVYG--------DVQRVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLS 370 (492)
T ss_pred ecCchhccchhHHHHHHhhhc--------ceEEEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeec
Confidence 8875 5589999999999999 457899986542 469999999999999997 7999999999999988
Q ss_pred chHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCC--CCCCCccccc-C-CCcccEEEEcCCCccCCHHHHHH
Q psy16116 522 TTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVP--VPYLPQHIIT-S-GTRKDCIRLRGLPYEALCILMDI 597 (612)
Q Consensus 522 s~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p--~~~~~~~~~~-~-~~~~~~VfVrNLPf~vTeeDLke 597 (612)
....+.- .+.+ ++ .+|.. ......| +.+++..+.. . -....++++.|+|.+++||||++
T Consensus 371 KH~~vql--p~eg------q~---d~glT------~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~ 433 (492)
T KOG1190|consen 371 KHTNVQL--PREG------QE---DQGLT------KDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKN 433 (492)
T ss_pred cCccccC--CCCC------Cc---ccccc------ccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHH
Confidence 7655431 1100 00 00000 0001111 1111111110 1 13456899999999999999999
Q ss_pred hhccCC
Q psy16116 598 FFVGQQ 603 (612)
Q Consensus 598 fFs~~g 603 (612)
.|..-|
T Consensus 434 ~f~~~g 439 (492)
T KOG1190|consen 434 LFQEPG 439 (492)
T ss_pred hhhcCC
Confidence 998753
No 103
>KOG1190|consensus
Probab=98.34 E-value=7.5e-06 Score=87.63 Aligned_cols=168 Identities=15% Similarity=0.184 Sum_probs=116.1
Q ss_pred cccceecCCCHHHH-HhhHhhccc-ccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 339 ALCPLVQNIWLSLL-LNTIPGYEQ-VLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 339 ~l~vlV~nLp~~~~-e~~fkeff~-~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
.+.++|.||-.+.+ .+-+--.|. -|.+..|+|++++. --|.|.+.+...|+-|+. ++++.|-|+.|+|..+..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 44667777766543 333333333 35688899987643 479999999999999997 899999999999988765
Q ss_pred cchhhccCCCCc-----c-----hhhhcc---------CCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeE
Q psy16116 416 EDFINVAGGNNN-----E-----AQAFLT---------RGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGV 476 (612)
Q Consensus 416 ~e~~~~~g~~~~-----e-----~~~~~~---------~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I 476 (612)
....-...+... . -..|.+ -....++++.|+|.+++|+|+++.|.+.|- . ++.-
T Consensus 373 ~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~----~---vkaf 445 (492)
T KOG1190|consen 373 TNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGG----Q---VKAF 445 (492)
T ss_pred ccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCc----e---EEee
Confidence 433211111000 0 001110 134568999999999999999999999881 1 1111
Q ss_pred EEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCcccCCE-EEEEEec
Q psy16116 477 LFVKKPDGKATGDAFVLFEKEEEADKAL-SKHKESIGIR-YIELFRS 521 (612)
Q Consensus 477 ~i~~d~~GrskG~AFV~F~s~edA~kAL-~~~~~~iggR-~IeV~~a 521 (612)
.+ -++.+-+|++.+.+.|+|-.|| .+|.+.+|+- .++|.-+
T Consensus 446 kf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 446 KF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred ee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 11 3456679999999999999999 4788888865 6777654
No 104
>KOG0121|consensus
Probab=98.33 E-value=4.8e-07 Score=83.31 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=66.0
Q ss_pred CCCcccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCC-CCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEec
Q psy16116 336 NPVALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFG-RRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTK 412 (612)
Q Consensus 336 ~~~~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~G-rsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~ 412 (612)
+..+++|+|+||++-++|+.|-++|.. +.+..|.|-.|+.. ..-|||||+|-+.+||+.||+ .++..|+.|.|.+-+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 345678889999999999888887776 56888888888764 568999999999999999998 799999999999954
Q ss_pred c
Q psy16116 413 A 413 (612)
Q Consensus 413 s 413 (612)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 3
No 105
>KOG0113|consensus
Probab=98.33 E-value=8.4e-07 Score=91.57 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=60.2
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEec
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTK 412 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~ 412 (612)
++||.-|++++.|..|+..|.. +.|..|+|+.|+ +|+++|||||+|+++-|...|-+ .++..|+||.|-|-.
T Consensus 103 TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 103 TLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred eeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 6667777777777777766655 569999999996 79999999999999999999997 789999999887743
No 106
>KOG4207|consensus
Probab=98.33 E-value=3.7e-07 Score=90.02 Aligned_cols=74 Identities=22% Similarity=0.175 Sum_probs=63.4
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~ 414 (612)
.+.|-||++.++-++|+..|+. +.+.+|.|..|. ++.++|||||.|....||+.||+ +++..++||.|.|..+.
T Consensus 15 SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 15 SLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred eEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4557899998888888777766 558999999987 47789999999999999999997 89999999999997664
No 107
>KOG4454|consensus
Probab=98.29 E-value=2.8e-07 Score=91.58 Aligned_cols=131 Identities=18% Similarity=0.140 Sum_probs=103.5
Q ss_pred CCcccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116 337 PVALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 337 ~~~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~ 414 (612)
+.+.++||.|+.....|+.|.+.|.. +.|..|.|..++++..+ ||||.|+++-.+.-|++ +|+-.+-++.+.|..
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~-- 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL-- 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc--
Confidence 34456779999999999999999986 66888888888899888 99999999999999998 577777776655532
Q ss_pred ccchhhccCCCCcchhhhccCCcccEEEEeC----CCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEE
Q psy16116 415 GEDFINVAGGNNNEAQAFLTRGAQVIIRMRG----LPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDA 490 (612)
Q Consensus 415 ~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~n----LP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~A 490 (612)
+-++ |...++++.+.+.|+..+ .++.+++..+.+||.+-++
T Consensus 84 ---------------------------r~G~shapld~r~~~ei~~~v~s~a~--------p~~~~R~~~~~d~rnrn~~ 128 (267)
T KOG4454|consen 84 ---------------------------RCGNSHAPLDERVTEEILYEVFSQAG--------PIEGVRIPTDNDGRNRNFG 128 (267)
T ss_pred ---------------------------ccCCCcchhhhhcchhhheeeecccC--------CCCCccccccccCCccCcc
Confidence 2222 445677888888898888 4577999999999999999
Q ss_pred EEEeCCHHHHHHHHH
Q psy16116 491 FVLFEKEEEADKALS 505 (612)
Q Consensus 491 FV~F~s~edA~kAL~ 505 (612)
||.+--....=.|+.
T Consensus 129 ~~~~qr~~~~P~~~~ 143 (267)
T KOG4454|consen 129 FVTYQRLCAVPFALD 143 (267)
T ss_pred chhhhhhhcCcHHhh
Confidence 998766655555553
No 108
>KOG0533|consensus
Probab=98.28 E-value=2e-06 Score=87.85 Aligned_cols=82 Identities=16% Similarity=0.253 Sum_probs=73.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI 516 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I 516 (612)
...|.|.|||+.++++||+++|.++| ..+.+-+-+|+.|++.|.|-|.|...+||.+|++ +++-.++|+.|
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~--------~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~m 154 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFG--------ELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPM 154 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhc--------cceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCcee
Confidence 36799999999999999999999998 4567888899999999999999999999999997 58899999999
Q ss_pred EEEecchHHHH
Q psy16116 517 ELFRSTTAEVQ 527 (612)
Q Consensus 517 eV~~as~~e~~ 527 (612)
.+..+...-+.
T Consensus 155 k~~~i~~~~~~ 165 (243)
T KOG0533|consen 155 KIEIISSPSQS 165 (243)
T ss_pred eeEEecCcccc
Confidence 99888655443
No 109
>KOG0106|consensus
Probab=98.26 E-value=1.5e-06 Score=87.27 Aligned_cols=126 Identities=15% Similarity=0.142 Sum_probs=85.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCcccCCEEEEE
Q psy16116 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL-SKHKESIGIRYIEL 518 (612)
Q Consensus 440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL-~~~~~~iggR~IeV 518 (612)
.+||++||+.+.+.||..||.++| .| ..|.+ ..||+||+|.+.-||+.|+ .+|+..|+|-.+.|
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg----~~----~d~~m-------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vv 67 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYG----KI----PDADM-------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVV 67 (216)
T ss_pred ceeecccCCccchhHHHHHHhhcc----cc----cccee-------ecccceeccCchhhhhcccchhcCceecceeeee
Confidence 499999999999999999999999 33 22443 2479999999999999999 47888887766555
Q ss_pred EecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHHHHh
Q psy16116 519 FRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDIF 598 (612)
Q Consensus 519 ~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDLkef 598 (612)
..+...... .+.+...++.+ + ..... ......+.+.|.||+-.+...||+..
T Consensus 68 e~~r~~~~~------~g~~~~g~r~~-----------~-~~~~~----------~p~~s~~r~~~~~~~~r~~~qdl~d~ 119 (216)
T KOG0106|consen 68 EHARGKRRG------RGRPRGGDRRS-----------D-SRRYR----------PPSRTHFRLIVRNLSLRVSWQDLKDH 119 (216)
T ss_pred ecccccccc------cCCCCCCCccc-----------h-hhccC----------CcccccceeeeccchhhhhHHHHhhh
Confidence 443211100 00010000000 0 00000 01235678999999999999999999
Q ss_pred hccCCcEeEe
Q psy16116 599 FVGQQDSFVH 608 (612)
Q Consensus 599 Fs~~gdI~~~ 608 (612)
|..+|.+..+
T Consensus 120 ~~~~g~~~~~ 129 (216)
T KOG0106|consen 120 FRPAGEVTYV 129 (216)
T ss_pred hcccCCCchh
Confidence 9999988554
No 110
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.25 E-value=3.2e-06 Score=66.52 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=43.8
Q ss_pred HhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEec
Q psy16116 353 LNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTK 412 (612)
Q Consensus 353 e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~ 412 (612)
.+.|+.||. +.+|.+..+. +|+|||+|.+.++|++|++ +|+..++|+.|+|..
T Consensus 2 ~~~f~~fG~---V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 2 YKLFSKFGE---VKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHTTTS----EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred hHHhCCccc---EEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456667664 7888886543 6899999999999999997 899999999999964
No 111
>KOG0120|consensus
Probab=98.25 E-value=2.3e-06 Score=95.02 Aligned_cols=139 Identities=15% Similarity=0.152 Sum_probs=104.7
Q ss_pred CCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchhhc----cC---CCCcchhhhccCCcccEEEEeCCCCC
Q psy16116 377 RRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINV----AG---GNNNEAQAFLTRGAQVIIRMRGLPYE 449 (612)
Q Consensus 377 rsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~~~----~g---~~~~e~~~~~~~~~~~~VfV~nLP~s 449 (612)
..+.|||++|.+.++|..|+.+++..+.|+.+.+..-........ .+ .................++|+|||..
T Consensus 221 ~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~ 300 (500)
T KOG0120|consen 221 LEKNFAFIEFRSISEATEAMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLY 300 (500)
T ss_pred ccccceeEEecCCCchhhhhcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCc
Confidence 456799999999999999999999989998887755433221100 00 00000000000123466999999999
Q ss_pred CCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecch
Q psy16116 450 CTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTT 523 (612)
Q Consensus 450 ~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~ 523 (612)
.++..++|+...|| ....-+++.|. +|.++||||.+|-+....+.|++ +||..++++.+.|..+..
T Consensus 301 l~~~q~~Ell~~fg--------~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 301 LTEDQVKELLDSFG--------PLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cCHHHHHHHHHhcc--------cchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 99999999999999 34567788886 69999999999999999999997 899999999999887643
No 112
>KOG0129|consensus
Probab=98.21 E-value=1.4e-05 Score=87.75 Aligned_cols=132 Identities=18% Similarity=0.172 Sum_probs=86.8
Q ss_pred ceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccc-------hhhccCCCCcchhhhccCCcccEEEEeCCCCCCCH
Q psy16116 380 GEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGED-------FINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTA 452 (612)
Q Consensus 380 G~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e-------~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te 452 (612)
||.|..|+++..++.-|..=-..-++-++.|...+-.. |.-.......+.. ..-...+||||++||--.+-
T Consensus 307 ~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~s--q~lDprrTVFVGgvprpl~A 384 (520)
T KOG0129|consen 307 GYVFLVFEDERSVQSLLSACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHN--QPIDPRRTVFVGGLPRPLTA 384 (520)
T ss_pred cEEEEEecchHHHHHHHHHHhhcccceEEEEecCcccccceeEEeeEeccchhhhccC--cccCccceEEecCCCCcchH
Confidence 39999999999998887521113333444443222111 1110000000000 01125689999999999999
Q ss_pred HHHHHHHh-cCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHh-----CCcccCCEEEEEEecc
Q psy16116 453 KQVIDFFE-AGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSK-----HKESIGIRYIELFRST 522 (612)
Q Consensus 453 ~dLrefF~-~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~-----~~~~iggR~IeV~~as 522 (612)
++|-.+|+ .|| ++.-+-|-+|+ -+-++|-|=|+|.+....-+||+. +...+. +.|||++--
T Consensus 385 ~eLA~imd~lyG--------gV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~-KRVEIkPYv 452 (520)
T KOG0129|consen 385 EELAMIMEDLFG--------GVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDID-KRVEIKPYV 452 (520)
T ss_pred HHHHHHHHHhcC--------ceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccc-eeeeeccee
Confidence 99999999 577 45667888884 577999999999999999999974 334444 467887754
No 113
>KOG0116|consensus
Probab=98.16 E-value=4e-06 Score=91.83 Aligned_cols=76 Identities=24% Similarity=0.339 Sum_probs=63.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEE
Q psy16116 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIEL 518 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV 518 (612)
..|||+|||++++.++|+++|+.|| .| ...+|.+.. +.++...||||+|.+.++++.||+.+...+|+|.+.|
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG----~I--k~~~I~vr~-~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~V 361 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFG----PI--KEGGIQVRS-PGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNV 361 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcc----cc--cccceEEec-cCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEE
Confidence 4499999999999999999999999 45 334444433 4555559999999999999999999999999999999
Q ss_pred Eec
Q psy16116 519 FRS 521 (612)
Q Consensus 519 ~~a 521 (612)
..-
T Consensus 362 eek 364 (419)
T KOG0116|consen 362 EEK 364 (419)
T ss_pred Eec
Confidence 753
No 114
>KOG4209|consensus
Probab=98.15 E-value=2.8e-06 Score=86.53 Aligned_cols=78 Identities=21% Similarity=0.188 Sum_probs=70.5
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~ 515 (612)
....+||+|+.+.++.+++...|+.|| .+..|.++.|. .|.+||||||+|.+.+.+.+||.+|+..|.|+.
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg--------~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~ 171 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCG--------GINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPA 171 (231)
T ss_pred CCceEEEeccccccccchhhheeeccC--------CccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCccccccc
Confidence 345699999999999999999999999 55778999998 567999999999999999999999999999999
Q ss_pred EEEEecc
Q psy16116 516 IELFRST 522 (612)
Q Consensus 516 IeV~~as 522 (612)
|+|....
T Consensus 172 i~vt~~r 178 (231)
T KOG4209|consen 172 IEVTLKR 178 (231)
T ss_pred ceeeeee
Confidence 9997643
No 115
>KOG0146|consensus
Probab=98.13 E-value=7.9e-05 Score=76.24 Aligned_cols=78 Identities=8% Similarity=0.018 Sum_probs=59.0
Q ss_pred CCCcccceecCCCHHHHHhhHhhccc-ccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEec
Q psy16116 336 NPVALCPLVQNIWLSLLLNTIPGYEQ-VLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTK 412 (612)
Q Consensus 336 ~~~~l~vlV~nLp~~~~e~~fkeff~-~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~ 412 (612)
.|+.+-+||.-||.+-.+..+-..|. ++.+.+.++..|+ +..|+.||||.|.+..+++.||+ +||-.||-+.++|..
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 35555566888887766555554443 3567777777776 56899999999999999999997 899889988777754
Q ss_pred c
Q psy16116 413 A 413 (612)
Q Consensus 413 s 413 (612)
-
T Consensus 362 K 362 (371)
T KOG0146|consen 362 K 362 (371)
T ss_pred c
Confidence 3
No 116
>KOG0120|consensus
Probab=98.10 E-value=1.9e-05 Score=87.78 Aligned_cols=170 Identities=14% Similarity=0.126 Sum_probs=108.2
Q ss_pred CCCHHHHHhhHhhcccccCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhhccC
Q psy16116 346 NIWLSLLLNTIPGYEQVLGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFINVAG 423 (612)
Q Consensus 346 nLp~~~~e~~fkeff~~~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~~~g 423 (612)
++..+.+.+.+..|+. .....++.|.. |.++||||-+|.+....+.|+. +||..++++.+-|..+..........
T Consensus 300 ~l~~~q~~Ell~~fg~---lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~ 376 (500)
T KOG0120|consen 300 YLTEDQVKELLDSFGP---LKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVN 376 (500)
T ss_pred ccCHHHHHHHHHhccc---chhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhcccc
Confidence 3444667777776664 55666666654 8999999999999999999997 89999999998886664322111000
Q ss_pred CC-Cc-ch---hh---hccCCcccEEEEeC------CCCCCCH----HHHHHHHhcCCCCccccccCceeEEEeeC-CC-
Q psy16116 424 GN-NN-EA---QA---FLTRGAQVIIRMRG------LPYECTA----KQVIDFFEAGTENSCNVMDGEEGVLFVKK-PD- 483 (612)
Q Consensus 424 ~~-~~-e~---~~---~~~~~~~~~VfV~n------LP~s~te----~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d-~~- 483 (612)
.. +. .. .. ........+|.+.| |-++..- +|++.=+.+|| .+..|.|+.+ .+
T Consensus 377 ~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g--------~v~~v~ipr~~~~~ 448 (500)
T KOG0120|consen 377 FNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG--------AVRSVEIPRPYPDE 448 (500)
T ss_pred CCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC--------ceeEEecCCCCCCC
Confidence 00 00 00 00 00001122233322 2233322 23344456777 3456788766 32
Q ss_pred --CCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecchHHH
Q psy16116 484 --GKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTTAEV 526 (612)
Q Consensus 484 --GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~~e~ 526 (612)
.-..|--||+|++.+++++|++ ++|.++++|.|-........+
T Consensus 449 ~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY 494 (500)
T KOG0120|consen 449 NPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKY 494 (500)
T ss_pred CcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHh
Confidence 4568999999999999999995 899999999987777665443
No 117
>KOG0107|consensus
Probab=98.08 E-value=8.2e-06 Score=78.89 Aligned_cols=72 Identities=19% Similarity=0.092 Sum_probs=51.8
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
.|+|+||+..+++.+|+..|.. +.+.+|-|-.+ .-|||||||++..||+.|+. +|+..|.|..|.|..++..
T Consensus 12 kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 12 KVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred eEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 3445555555544444433332 34677777553 56899999999999999997 8999999999999877653
No 118
>KOG0415|consensus
Probab=98.07 E-value=5.6e-06 Score=87.15 Aligned_cols=77 Identities=18% Similarity=0.144 Sum_probs=70.8
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKAL-SKHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL-~~~~~~iggR 514 (612)
...+|||.-|..-++++||.-.|+.|| .+.++.|+.|. +|-+--||||+|++.++.++|. +|++-.|+.|
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG--------~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr 309 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFG--------KIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR 309 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcc--------cceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc
Confidence 457899999999999999999999999 44678999887 8999999999999999999999 7899999999
Q ss_pred EEEEEec
Q psy16116 515 YIELFRS 521 (612)
Q Consensus 515 ~IeV~~a 521 (612)
.|.|.-+
T Consensus 310 RIHVDFS 316 (479)
T KOG0415|consen 310 RIHVDFS 316 (479)
T ss_pred eEEeehh
Confidence 9999876
No 119
>KOG0111|consensus
Probab=98.06 E-value=4.4e-06 Score=83.16 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=63.6
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|++|..+.++..|..-|.. +.+.+|.+..|. ++++||||||+|.-.|||.+|+. +|...+-||.|+|..+...
T Consensus 12 tlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 12 TLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPE 90 (298)
T ss_pred eEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCc
Confidence 4447788888888888866654 668999998885 58999999999999999999997 8889999999999877543
No 120
>KOG0126|consensus
Probab=98.05 E-value=1e-06 Score=85.42 Aligned_cols=79 Identities=16% Similarity=0.080 Sum_probs=68.1
Q ss_pred CCCcccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEec
Q psy16116 336 NPVALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTK 412 (612)
Q Consensus 336 ~~~~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~ 412 (612)
..++.+++|+|||++-+|.++--.|.. +.+.+|.+++|+ +|+|+||||..|++...--.|+. +||-.|.||.|+|-.
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 456789999999999999887766655 558999999997 59999999999999999999996 899999999999955
Q ss_pred cC
Q psy16116 413 AN 414 (612)
Q Consensus 413 s~ 414 (612)
..
T Consensus 112 v~ 113 (219)
T KOG0126|consen 112 VS 113 (219)
T ss_pred cc
Confidence 43
No 121
>KOG4661|consensus
Probab=98.02 E-value=9.8e-06 Score=89.38 Aligned_cols=80 Identities=20% Similarity=0.246 Sum_probs=69.6
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
.++.|+|.||...+--.||+++|++|| .| .+.+|+.+. +-..+.||||++.+.++|.++|+ +|+..|.||
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyG----KV----vGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr 475 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYG----KV----VGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR 475 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhc----ce----eceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce
Confidence 467799999999999999999999999 34 468888775 43468899999999999999997 799999999
Q ss_pred EEEEEecchH
Q psy16116 515 YIELFRSTTA 524 (612)
Q Consensus 515 ~IeV~~as~~ 524 (612)
.|.|.++..+
T Consensus 476 mISVEkaKNE 485 (940)
T KOG4661|consen 476 MISVEKAKNE 485 (940)
T ss_pred eeeeeecccC
Confidence 9999987543
No 122
>KOG0153|consensus
Probab=98.01 E-value=1.2e-05 Score=84.64 Aligned_cols=74 Identities=23% Similarity=0.235 Sum_probs=65.1
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh--CCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSK--HKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~--~~~~iggR 514 (612)
.-.+|||+||-..++|.||+++|..|| ++++|++.. .+|.|||+|.+.+.|++|.++ ++-.|+|+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyG--------eirsi~~~~-----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYG--------EIRSIRILP-----RKGCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcC--------CeeeEEeec-----ccccceeeehhhHHHHHHHHhhcceeeecce
Confidence 457899999999999999999999999 567788863 346999999999999999974 88899999
Q ss_pred EEEEEecch
Q psy16116 515 YIELFRSTT 523 (612)
Q Consensus 515 ~IeV~~as~ 523 (612)
.|.|.....
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999998765
No 123
>KOG0132|consensus
Probab=97.98 E-value=1.3e-05 Score=91.25 Aligned_cols=75 Identities=17% Similarity=0.340 Sum_probs=66.5
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
-++||||++|+..++|.||+++|+.|| ++++|.+. -++|.|||.+.+-.||.+||. +++..+.++.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefG--------eiqSi~li-----~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~ 486 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFG--------EIQSIILI-----PPRGCAFIKMVRRQDAEKALQKLSNVKVADKT 486 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcc--------cceeEeec-----cCCceeEEEEeehhHHHHHHHHHhccccccee
Confidence 468999999999999999999999999 45677775 478999999999999999996 6889999999
Q ss_pred EEEEecchH
Q psy16116 516 IELFRSTTA 524 (612)
Q Consensus 516 IeV~~as~~ 524 (612)
|+|.++..+
T Consensus 487 Iki~Wa~g~ 495 (894)
T KOG0132|consen 487 IKIAWAVGK 495 (894)
T ss_pred eEEeeeccC
Confidence 999988543
No 124
>KOG0129|consensus
Probab=97.94 E-value=3.8e-05 Score=84.57 Aligned_cols=136 Identities=18% Similarity=0.233 Sum_probs=82.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC--CCC--cee---EEEEEeCCHHHHHHHHHh-CCc
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP--DGK--ATG---DAFVLFEKEEEADKALSK-HKE 509 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~--~Gr--skG---~AFV~F~s~edA~kAL~~-~~~ 509 (612)
.+.|||+||||+++|+.|...|..|| .+ .|..+... .++ .+| |.|..|+++..+..-|.- ..
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FG----s~-----~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~- 328 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFG----SV-----KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE- 328 (520)
T ss_pred ccceeecCCCccccHHHHHhhccccc----ce-----EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-
Confidence 46799999999999999999999999 22 13444221 232 567 999999999999887742 21
Q ss_pred ccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCcc
Q psy16116 510 SIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYE 589 (612)
Q Consensus 510 ~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~ 589 (612)
.-++-++.|..-+-+++ .++ ..+...... + +-.... ..-...+||||++||--
T Consensus 329 ~~~~~yf~vss~~~k~k--~VQ-----IrPW~laDs-~--------fv~d~s-----------q~lDprrTVFVGgvprp 381 (520)
T KOG0129|consen 329 GEGNYYFKVSSPTIKDK--EVQ-----IRPWVLADS-D--------FVLDHN-----------QPIDPRRTVFVGGLPRP 381 (520)
T ss_pred cccceEEEEecCccccc--cee-----EEeeEeccc-h--------hhhccC-----------cccCccceEEecCCCCc
Confidence 22223343332221111 000 000000000 0 000000 01235679999999999
Q ss_pred CCHHHHHHhhcc-CCcEeEeeC
Q psy16116 590 ALCILMDIFFVG-QQDSFVHKV 610 (612)
Q Consensus 590 vTeeDLkefFs~-~gdI~~~ki 610 (612)
+|.++|-.+|++ ||-|.++-|
T Consensus 382 l~A~eLA~imd~lyGgV~yaGI 403 (520)
T KOG0129|consen 382 LTAEELAMIMEDLFGGVLYVGI 403 (520)
T ss_pred chHHHHHHHHHHhcCceEEEEe
Confidence 999999999996 677766543
No 125
>KOG1548|consensus
Probab=97.87 E-value=3.7e-05 Score=81.02 Aligned_cols=84 Identities=19% Similarity=0.304 Sum_probs=70.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEE
Q psy16116 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIE 517 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~Ie 517 (612)
..|||.|||-++|.+++.++|++||+=--.+-.+.-.|+|..+..|+.+|.|.+.|-..|+++.|++ +++..++|+.|+
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~r 214 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLR 214 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEE
Confidence 4599999999999999999999999400011112335788888899999999999999999999998 699999999999
Q ss_pred EEecc
Q psy16116 518 LFRST 522 (612)
Q Consensus 518 V~~as 522 (612)
|..+.
T Consensus 215 VerAk 219 (382)
T KOG1548|consen 215 VERAK 219 (382)
T ss_pred Eehhh
Confidence 98875
No 126
>KOG0114|consensus
Probab=97.87 E-value=2.8e-05 Score=69.50 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=55.7
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
-++|+|||++.+.+...+.|.. +.+..|++-..+ .-+|.|||.+++..||++|+. +++..+.+|++.|-.-+..
T Consensus 20 iLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 20 ILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred eEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 3457777777666665554433 558888885543 358999999999999999997 8999999999998655443
No 127
>KOG4208|consensus
Probab=97.87 E-value=2.7e-05 Score=77.10 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=54.1
Q ss_pred CCHHHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 347 IWLSLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 347 Lp~~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+-...+..+|+.|+ +.+..+++.+++ +|.|+|||||+|+++|.|+-|-+ +|+..|+++.+++.....+
T Consensus 61 ~~e~~~~~~~~q~~--g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 61 FFETEILNYFRQFG--GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred hhHHHHhhhhhhcC--CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 33466777777775 357778887775 69999999999999999999996 8999999998888665443
No 128
>KOG0130|consensus
Probab=97.72 E-value=3.4e-05 Score=71.91 Aligned_cols=73 Identities=14% Similarity=0.083 Sum_probs=57.2
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEecc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKA 413 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s 413 (612)
.+||.++-.+++++++.+.|.. +.+++|++-.|. +|-.+|||.|+|++.++|++|+. +|+..|.|..|.|-++
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 3456666666666666654433 458999998876 58889999999999999999996 8889999999999655
No 129
>KOG1456|consensus
Probab=97.57 E-value=0.0088 Score=64.08 Aligned_cols=167 Identities=14% Similarity=0.111 Sum_probs=110.9
Q ss_pred CCCCCcccceecCCCHHHH--HhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEE
Q psy16116 334 PGNPVALCPLVQNIWLSLL--LNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEV 410 (612)
Q Consensus 334 ~~~~~~l~vlV~nLp~~~~--e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV 410 (612)
.+......++|.+|.-... ...|.-|-.-+.+..|++++.+. |.|.|++.+.+++++|++ +++..+-|..|+|
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----ceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 3455565677888865443 22222222224588999988765 699999999999999998 7887777777888
Q ss_pred eccCccchh------hccCCCC------cchhhhcc---------CCcccEEEEeCCCCCCCHHHHHHHHhcCCCCcccc
Q psy16116 411 TKANGEDFI------NVAGGNN------NEAQAFLT---------RGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNV 469 (612)
Q Consensus 411 ~~s~~~e~~------~~~g~~~------~e~~~~~~---------~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~I 469 (612)
..+...-.. -..++.+ .+...|.+ ...+.+|+.-|.|..+||+.|.++|.+.++
T Consensus 358 ~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v----- 432 (494)
T KOG1456|consen 358 CVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDV----- 432 (494)
T ss_pred eeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCC-----
Confidence 666442111 1111110 01111211 135788999999999999999999998874
Q ss_pred ccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh-CCcccC
Q psy16116 470 MDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSK-HKESIG 512 (612)
Q Consensus 470 vd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~-~~~~ig 512 (612)
...+|+|...++-|+ --|.++|++.++|..||.+ |...|.
T Consensus 433 --~~~svkvFp~kserS-ssGllEfe~~s~Aveal~~~NH~pi~ 473 (494)
T KOG1456|consen 433 --PPTSVKVFPLKSERS-SSGLLEFENKSDAVEALMKLNHYPIE 473 (494)
T ss_pred --CcceEEeeccccccc-ccceeeeehHHHHHHHHHHhcccccc
Confidence 234677765544443 4589999999999999964 555554
No 130
>KOG0226|consensus
Probab=97.55 E-value=3.9e-05 Score=78.06 Aligned_cols=80 Identities=11% Similarity=0.108 Sum_probs=56.4
Q ss_pred CcccceecCCCHHHHHhhHhhcccccC-eeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116 338 VALCPLVQNIWLSLLLNTIPGYEQVLG-LGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 338 ~~l~vlV~nLp~~~~e~~fkeff~~~~-v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~ 414 (612)
++.++|.+.|.-+...+.+..-|..+. -...++++++ +|+++|||||.|.+.+|+..|++ ++++++|.|.|...++.
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 355666666654444444433332211 2234556665 69999999999999999999996 89999999999998877
Q ss_pred ccc
Q psy16116 415 GED 417 (612)
Q Consensus 415 ~~e 417 (612)
+++
T Consensus 269 wke 271 (290)
T KOG0226|consen 269 WKE 271 (290)
T ss_pred HHh
Confidence 654
No 131
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.55 E-value=0.0007 Score=60.27 Aligned_cols=82 Identities=13% Similarity=0.122 Sum_probs=63.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccC----
Q psy16116 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIG---- 512 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~ig---- 512 (612)
.+|.|||+|-..|.++|.+.+.+..- +.-+-+-++.|. ++.+.|||||-|.+++++.+-.+ .+|....
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~------g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s 75 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFK------GKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNS 75 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhcc------CcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCC
Confidence 57999999999999999999976431 134557778886 67799999999999999998886 4776554
Q ss_pred CEEEEEEecchHHH
Q psy16116 513 IRYIELFRSTTAEV 526 (612)
Q Consensus 513 gR~IeV~~as~~e~ 526 (612)
.+.++|..|.-+..
T Consensus 76 ~Kvc~i~yAriQG~ 89 (97)
T PF04059_consen 76 KKVCEISYARIQGK 89 (97)
T ss_pred CcEEEEehhHhhCH
Confidence 45577777654433
No 132
>KOG1456|consensus
Probab=97.52 E-value=0.0078 Score=64.45 Aligned_cols=141 Identities=15% Similarity=0.143 Sum_probs=92.1
Q ss_pred cccEEEEeCCCCC-CCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYE-CTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s-~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
.+.++.|-||.-. ..-+.|-++|--|| .+++|++++.+ .|-|.|++.+..++++|+. +++..+-|.
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYG--------NV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~ 353 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYG--------NVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGG 353 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcC--------ceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccc
Confidence 5788999999887 45678999999999 45789999764 4689999999999999996 688888888
Q ss_pred EEEEEecchHHHHHHhhhhc---CCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCC
Q psy16116 515 YIELFRSTTAEVQQVLNKTM---ELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEAL 591 (612)
Q Consensus 515 ~IeV~~as~~e~~~~~~~~~---~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vT 591 (612)
+|+|..+...-+... +... ..+.-.+-..+.+ -.+.+ |.+....+.+ ....+|+.-|-|-.+|
T Consensus 354 kl~v~~SkQ~~v~~~-~pflLpDgSpSfKdys~SkN------nRFss----p~qAsKNrIq---~Ps~vLHffNaP~~vt 419 (494)
T KOG1456|consen 354 KLNVCVSKQNFVSPV-QPFLLPDGSPSFKDYSGSKN------NRFSS----PEQASKNRIQ---PPSNVLHFFNAPLGVT 419 (494)
T ss_pred eEEEeeccccccccC-CceecCCCCcchhhcccccc------cccCC----hhHhhccccc---CCcceeEEecCCCccC
Confidence 899877654322211 1100 0000000000000 01111 1111112221 3467899999999999
Q ss_pred HHHHHHhhccCC
Q psy16116 592 CILMDIFFVGQQ 603 (612)
Q Consensus 592 eeDLkefFs~~g 603 (612)
||.|.++|....
T Consensus 420 Ee~l~~i~nek~ 431 (494)
T KOG1456|consen 420 EEQLIGICNEKD 431 (494)
T ss_pred HHHHHHHhhhcC
Confidence 999999997753
No 133
>KOG4454|consensus
Probab=97.44 E-value=4.9e-05 Score=75.87 Aligned_cols=76 Identities=11% Similarity=0.059 Sum_probs=67.2
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
.+++|||.|+-..++|+-|.++|-..| .+-.|.|+.+++++.+ ||||.|.++-.+.-|++ +|+-.+.++.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaG--------PV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e 78 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAG--------PVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDE 78 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccC--------ceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccch
Confidence 347899999999999999999999999 3456888989999998 99999999999999998 5999999998
Q ss_pred EEEEec
Q psy16116 516 IELFRS 521 (612)
Q Consensus 516 IeV~~a 521 (612)
+.|..-
T Consensus 79 ~q~~~r 84 (267)
T KOG4454|consen 79 EQRTLR 84 (267)
T ss_pred hhcccc
Confidence 877653
No 134
>KOG4210|consensus
Probab=97.38 E-value=0.00011 Score=77.08 Aligned_cols=129 Identities=13% Similarity=0.036 Sum_probs=89.6
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEee-CCCCCceeEEEEEeCCHHHHHHHHHhCCc-ccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVK-KPDGKATGDAFVLFEKEEEADKALSKHKE-SIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~-d~~GrskG~AFV~F~s~edA~kAL~~~~~-~iggR 514 (612)
...+.|++++.+.+.+.++..+|...|. .++ ..+.. .....++|+++|.|+..+.+..||++.+. .+.++
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~----~~~----~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~ 158 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGL----RVD----ARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGN 158 (285)
T ss_pred ccccccccccccchhhccccccchhhcC----ccc----chhhhhccccccccceeeccccHHHHHHHHHhhhccccccc
Confidence 3567999999999999999999999983 222 33333 34678999999999999999999998764 55555
Q ss_pred EEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEE-EcCCCccCCHH
Q psy16116 515 YIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIR-LRGLPYEALCI 593 (612)
Q Consensus 515 ~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~Vf-VrNLPf~vTee 593 (612)
.++.......-. +.. + .. . ........++| |.||+|++|++
T Consensus 159 ~~~~dl~~~~~~-----~~~---n----~~--~------------------------~~~~~~s~~~~~~~~~~f~~~~d 200 (285)
T KOG4210|consen 159 KGEKDLNTRRGL-----RPK---N----KL--S------------------------RLSSGPSDTIFFVGELDFSLTRD 200 (285)
T ss_pred cccCcccccccc-----ccc---c----hh--c------------------------ccccCccccceeecccccccchH
Confidence 544333221110 000 0 00 0 00011223454 99999999999
Q ss_pred HHHHhhccCCcEeEeeCC
Q psy16116 594 LMDIFFVGQQDSFVHKVP 611 (612)
Q Consensus 594 DLkefFs~~gdI~~~kip 611 (612)
||+++|..+++|..+++|
T Consensus 201 ~~~~~~~~~~~i~~~r~~ 218 (285)
T KOG4210|consen 201 DLKEHFVSSGEITSVRLP 218 (285)
T ss_pred HHhhhccCcCcceeeccC
Confidence 999999999999988876
No 135
>KOG4209|consensus
Probab=97.12 E-value=0.00051 Score=70.15 Aligned_cols=73 Identities=27% Similarity=0.208 Sum_probs=55.8
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA 413 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s 413 (612)
.++++|+++..+.+.+...|+. +.+..|.|..+++ |.++|||||+|.+.+.+.+||++++..|.++.|+|...
T Consensus 103 sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 103 SVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred eEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 4556667666554444433333 2367788888876 57899999999999999999999999999999998543
No 136
>KOG0533|consensus
Probab=96.97 E-value=0.0012 Score=67.84 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=63.3
Q ss_pred ccceecCCCHHHHHhhHhhccccc-CeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQVL-GLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~~-~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
..+.|.||++..+.++++++|... .+.-+-+-+++.|++.|.|-|.|...+||..|++ +++--++|+.+.+.....
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 457788888888888888777653 5677778889999999999999999999999997 788889999988865543
No 137
>KOG0116|consensus
Probab=96.95 E-value=0.0064 Score=67.08 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=47.8
Q ss_pred ceecCCCHHH----HHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEec
Q psy16116 342 PLVQNIWLSL----LLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTK 412 (612)
Q Consensus 342 vlV~nLp~~~----~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~ 412 (612)
++|+|||.++ ++++|+.|+.+ ....|.+. ...+++..||||+|.+.++++.||..+...||+|.+.|..
T Consensus 291 i~V~nlP~da~~~~l~~~Fk~FG~I-k~~~I~vr-~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 291 IFVKNLPPDATPAELEEVFKQFGPI-KEGGIQVR-SPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEE 363 (419)
T ss_pred eEeecCCCCCCHHHHHHHHhhcccc-cccceEEe-ccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEe
Confidence 4455555554 55566665542 22333332 2345555999999999999999999999999999988843
No 138
>KOG4849|consensus
Probab=96.91 E-value=0.00093 Score=70.65 Aligned_cols=84 Identities=10% Similarity=0.209 Sum_probs=70.4
Q ss_pred CCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccC
Q psy16116 435 RGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIG 512 (612)
Q Consensus 435 ~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~ig 512 (612)
.+..+++||+||-|.+|++||.+.....|+. .+ ..+++..++ +|.+||||.|...+...+++-++ +-.+.|.
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~--~~----~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH 150 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLA--QF----ADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH 150 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHH--HH----hhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceec
Confidence 3567899999999999999999999999952 23 347787776 79999999999999999999998 5888888
Q ss_pred CEEEEEEecchH
Q psy16116 513 IRYIELFRSTTA 524 (612)
Q Consensus 513 gR~IeV~~as~~ 524 (612)
|..-.|..+++.
T Consensus 151 GQ~P~V~~~NK~ 162 (498)
T KOG4849|consen 151 GQSPTVLSYNKT 162 (498)
T ss_pred CCCCeeeccchh
Confidence 887777776544
No 139
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.90 E-value=0.0036 Score=56.41 Aligned_cols=77 Identities=25% Similarity=0.278 Sum_probs=43.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh---C---CcccC
Q psy16116 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSK---H---KESIG 512 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~---~---~~~ig 512 (612)
..|++.|+...++.++|++.|+.+| .+.-|.+. .|. -.|||.|.+.++|++|++. . +-.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g--------~V~yVD~~---~G~--~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~ 68 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFG--------EVAYVDFS---RGD--TEGYVRFKTPEAAQKALEKLKEANDGKLKIK 68 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS----------EEEEE-----TT---SEEEEEESS---HHHHHHHHHHTTTS-B-TT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcC--------CcceEEec---CCC--CEEEEEECCcchHHHHHHHHHhccCCceEEc
Confidence 4799999999999999999999998 23334443 333 3799999999999999963 3 45577
Q ss_pred CEEEEEEecchHHHHH
Q psy16116 513 IRYIELFRSTTAEVQQ 528 (612)
Q Consensus 513 gR~IeV~~as~~e~~~ 528 (612)
+..+.+....-++-..
T Consensus 69 ~~~~~~~vLeGeeE~~ 84 (105)
T PF08777_consen 69 GKEVTLEVLEGEEEEE 84 (105)
T ss_dssp SSSEEEE---HHHHHH
T ss_pred CceEEEEECCCHHHHH
Confidence 7777777665444433
No 140
>KOG4661|consensus
Probab=96.82 E-value=0.0068 Score=67.69 Aligned_cols=69 Identities=19% Similarity=0.219 Sum_probs=53.3
Q ss_pred ecCCCH----HHHHhhHhhcccccCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 344 VQNIWL----SLLLNTIPGYEQVLGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 344 V~nLp~----~~~e~~fkeff~~~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
|.+|+. .++.+.|+.|+. |.+.+++.+.. -..+.||||++.+.++|-++|. ++...|.||.|.|.++.+
T Consensus 410 VSGLSstTRAtDLKnlFSKyGK---VvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 410 VSGLSSTTRATDLKNLFSKYGK---VVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred eeccccchhhhHHHHHHHHhcc---eeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 445544 456666766665 66777777643 2357899999999999999997 899999999999988754
No 141
>KOG0415|consensus
Probab=96.79 E-value=0.0026 Score=67.57 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=60.2
Q ss_pred cEeecCCCCCCCcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHH-HhCCCccC
Q psy16116 327 TVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMAL-KRHKHHID 404 (612)
Q Consensus 327 tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL-~~ng~~Ig 404 (612)
-|||-.|-+...+ ++++-.|+.|+. +.++.+++|. +|-+--||||+|++.+++++|. ++++..|+
T Consensus 241 VLFVCKLNPVTtD----------eDLeiIFSrFG~---i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID 307 (479)
T KOG0415|consen 241 VLFVCKLNPVTTD----------EDLEIIFSRFGK---IVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID 307 (479)
T ss_pred eEEEEecCCcccc----------cchhhHHhhccc---ceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec
Confidence 3666555554444 677777888775 7788888886 5889999999999999999999 68999999
Q ss_pred ceEEEEeccC
Q psy16116 405 KRYIEVTKAN 414 (612)
Q Consensus 405 gR~IeV~~s~ 414 (612)
.|.|-|-.+.
T Consensus 308 DrRIHVDFSQ 317 (479)
T KOG0415|consen 308 DRRIHVDFSQ 317 (479)
T ss_pred cceEEeehhh
Confidence 9999996554
No 142
>KOG0153|consensus
Probab=96.70 E-value=0.0047 Score=65.60 Aligned_cols=59 Identities=17% Similarity=0.185 Sum_probs=45.0
Q ss_pred HHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH--hCCCccCceEEEEeccCc
Q psy16116 349 LSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK--RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 349 ~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~--~ng~~IggR~IeV~~s~~ 415 (612)
..++++.|..|+ ++.+|+++. .+|+|||+|.+.+.|+.|.. .+...|+|+.|.|.++..
T Consensus 242 e~dIrdhFyqyG---eirsi~~~~-----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 242 EQDIRDHFYQYG---EIRSIRILP-----RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred HHHHHHHHhhcC---CeeeEEeec-----ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 355555555555 477888753 35699999999999999997 466788999999987665
No 143
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.60 E-value=0.0074 Score=52.42 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=44.5
Q ss_pred cEEEEeCCCCCCCHHH----HHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116 439 VIIRMRGLPYECTAKQ----VIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGI 513 (612)
Q Consensus 439 ~~VfV~nLP~s~te~d----LrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~igg 513 (612)
..|+|.|||-+.+-.. |+.++..||- .| +.| +.|-|+|.|.++|.|++|++ ++++.+.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGG---kV------l~v-------~~~tAilrF~~~~~A~RA~KRmegEdVfG 66 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGG---KV------LSV-------SGGTAILRFPNQEFAERAQKRMEGEDVFG 66 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT-----E------EE---------TT-EEEEESSHHHHHHHHHHHTT--SSS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCC---EE------EEE-------eCCEEEEEeCCHHHHHHHHHhhccccccc
Confidence 3599999999998665 4566678882 11 223 23789999999999999996 79999999
Q ss_pred EEEEEEecc
Q psy16116 514 RYIELFRST 522 (612)
Q Consensus 514 R~IeV~~as 522 (612)
+.|.|....
T Consensus 67 ~kI~v~~~~ 75 (90)
T PF11608_consen 67 NKISVSFSP 75 (90)
T ss_dssp S--EEESS-
T ss_pred ceEEEEEcC
Confidence 999998653
No 144
>KOG0132|consensus
Probab=96.59 E-value=0.0034 Score=72.25 Aligned_cols=107 Identities=14% Similarity=0.191 Sum_probs=76.6
Q ss_pred cccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 339 ALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 339 ~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+.+++|++|+...++.+|+..|+. +.+.+|.++- ++|+|||.+....||.+||+ +++..+.++.|+|.++...
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 346789999998888888876554 5588888853 68999999999999999996 6788899999999877543
Q ss_pred chhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhc
Q psy16116 417 DFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEA 461 (612)
Q Consensus 417 e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~ 461 (612)
... + +-+.+.+ ..+=|.-+||+--.+|++.|-+.
T Consensus 496 G~k------s-e~k~~wD----~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 496 GPK------S-EYKDYWD----VELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred Ccc------h-hhhhhhh----cccCeeEeehHhcCHHHHHhhhh
Confidence 211 1 1122222 22455667898666667777664
No 145
>KOG4660|consensus
Probab=96.49 E-value=0.0022 Score=71.51 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=58.4
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
..++|+|-|||.++++++|++.|+.|| + +.+|+.- -..+|..||+|-|--+|++||+ +++..|.|+.
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yG----e----ir~ir~t----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYG----E----IREIRET----PNKRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhc----c----hhhhhcc----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 457899999999999999999999999 3 3455542 3457899999999999999995 7999999887
Q ss_pred EE
Q psy16116 516 IE 517 (612)
Q Consensus 516 Ie 517 (612)
|.
T Consensus 142 ~k 143 (549)
T KOG4660|consen 142 IK 143 (549)
T ss_pred hc
Confidence 66
No 146
>KOG1995|consensus
Probab=96.46 E-value=0.0023 Score=68.13 Aligned_cols=85 Identities=16% Similarity=0.164 Sum_probs=68.0
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCc---eeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGE---EGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESI 511 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v---~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~i 511 (612)
...+|||.+||-++++++|.+||..|++ |.- ++. -.|.|-+|. +++.||.|-|.|.+.-.|+.|+. +++..+
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~--ikr-nK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGV--IKR-NKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcce--ecc-CCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 3467999999999999999999999983 111 001 135566665 79999999999999999999998 588888
Q ss_pred CCEEEEEEecchH
Q psy16116 512 GIRYIELFRSTTA 524 (612)
Q Consensus 512 ggR~IeV~~as~~ 524 (612)
.+-.|+|..+.+.
T Consensus 142 ~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 142 CGNTIKVSLAERR 154 (351)
T ss_pred cCCCchhhhhhhc
Confidence 8888999887544
No 147
>KOG1924|consensus
Probab=96.31 E-value=0.0075 Score=69.59 Aligned_cols=15 Identities=20% Similarity=-0.077 Sum_probs=6.5
Q ss_pred ccCCCCCCccccCCC
Q psy16116 292 LLQPMNTPFFFNMPR 306 (612)
Q Consensus 292 ~~~~~~~p~~~~~P~ 306 (612)
.-....+|+.+.|++
T Consensus 591 ~~Gg~ppPP~~gm~p 605 (1102)
T KOG1924|consen 591 FLGGPPPPPPPGMFP 605 (1102)
T ss_pred CCCCCCCCCCCCccc
Confidence 334444444444433
No 148
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.71 E-value=0.022 Score=51.06 Aligned_cols=76 Identities=13% Similarity=0.224 Sum_probs=50.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeC-------CCCCceeEEEEEeCCHHHHHHHHHhCCcc
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKK-------PDGKATGDAFVLFEKEEEADKALSKHKES 510 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d-------~~GrskG~AFV~F~s~edA~kAL~~~~~~ 510 (612)
+..|.|=|.|.+ ....|.+.|+.|| +|++ ...+..+ +.-.....-.|+|+++.+|.+||.+||..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G----~Ile---~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i 77 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFG----TILE---HFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTI 77 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-----EEC---EEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcc----eEEE---eecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeE
Confidence 356889999988 6678888999999 6653 1111111 11123468899999999999999999999
Q ss_pred cCCEEE-EEEec
Q psy16116 511 IGIRYI-ELFRS 521 (612)
Q Consensus 511 iggR~I-eV~~a 521 (612)
++|..| -|.++
T Consensus 78 ~~g~~mvGV~~~ 89 (100)
T PF05172_consen 78 FSGSLMVGVKPC 89 (100)
T ss_dssp ETTCEEEEEEE-
T ss_pred EcCcEEEEEEEc
Confidence 998664 46655
No 149
>KOG0112|consensus
Probab=95.62 E-value=0.011 Score=69.11 Aligned_cols=152 Identities=12% Similarity=0.071 Sum_probs=106.0
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccch
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDF 418 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~ 418 (612)
+++++||.....+..++.-|.. +.+.+|.|...+-++-.-||||.|.+-..+-.|.. ..+..|+...+.+-....
T Consensus 374 TLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~--- 450 (975)
T KOG0112|consen 374 TLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP--- 450 (975)
T ss_pred hhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc---
Confidence 5567777766666666643332 45778888666566666799999999998888884 555555544333321110
Q ss_pred hhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHH
Q psy16116 419 INVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEE 498 (612)
Q Consensus 419 ~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~e 498 (612)
. ......++++||..++....+...|..||. |+++.-+.|.+ ||||.+.+..
T Consensus 451 ------k---------st~ttr~~sgglg~w~p~~~l~r~fd~fGp-----------ir~Idy~hgq~--yayi~yes~~ 502 (975)
T KOG0112|consen 451 ------K---------STPTTRLQSGGLGPWSPVSRLNREFDRFGP-----------IRIIDYRHGQP--YAYIQYESPP 502 (975)
T ss_pred ------c---------cccceeeccCCCCCCChHHHHHHHhhccCc-----------ceeeecccCCc--ceeeecccCc
Confidence 0 012345999999999999999999999992 33333334443 9999999999
Q ss_pred HHHHHHH-hCCcccCC--EEEEEEecch
Q psy16116 499 EADKALS-KHKESIGI--RYIELFRSTT 523 (612)
Q Consensus 499 dA~kAL~-~~~~~igg--R~IeV~~as~ 523 (612)
.++.|+. +.+..||+ |.+.|..+..
T Consensus 503 ~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 503 AAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred cchhhHHHHhcCcCCCCCcccccccccC
Confidence 9999996 78888886 6677777643
No 150
>KOG0115|consensus
Probab=95.61 E-value=0.024 Score=58.23 Aligned_cols=99 Identities=18% Similarity=0.115 Sum_probs=77.1
Q ss_pred HHHHH-HhCCCccCceEEEEeccCccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccc
Q psy16116 392 RDMAL-KRHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVM 470 (612)
Q Consensus 392 A~kAL-~~ng~~IggR~IeV~~s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Iv 470 (612)
|+.|- ++++....+|.++|..+... .|+|.||+.-++.+.+.+-|+.||
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~a-----------------------~l~V~nl~~~~sndll~~~f~~fg------- 56 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMHA-----------------------ELYVVNLMQGASNDLLEQAFRRFG------- 56 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeeccc-----------------------eEEEEecchhhhhHHHHHhhhhcC-------
Confidence 33443 35788889999998665431 399999999999999999999999
Q ss_pred cCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh--CC---cccCCEEEEEEec
Q psy16116 471 DGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSK--HK---ESIGIRYIELFRS 521 (612)
Q Consensus 471 d~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~--~~---~~iggR~IeV~~a 521 (612)
.++...+..|..|+.+|.++|.|.+.-.+.+|+.. ++ ....+|.+-|.+.
T Consensus 57 -~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 57 -PIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred -ccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 45666677788999999999999999999999963 33 3345666666553
No 151
>KOG0151|consensus
Probab=95.54 E-value=0.024 Score=65.03 Aligned_cols=77 Identities=13% Similarity=0.059 Sum_probs=63.5
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC----CCCceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP----DGKATGDAFVLFEKEEEADKALS-KHKESI 511 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~----~GrskG~AFV~F~s~edA~kAL~-~~~~~i 511 (612)
....+||+||+.+++|+.|..-|..|| .+.+|+|+.-+ .-+-+-+|||.|-+-.|+++|++ +++..+
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfg--------PlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFG--------PLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccC--------cccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 456799999999999999999999999 34567776432 34567899999999999999996 788888
Q ss_pred CCEEEEEEec
Q psy16116 512 GIRYIELFRS 521 (612)
Q Consensus 512 ggR~IeV~~a 521 (612)
.++.+.+-.+
T Consensus 245 ~~~e~K~gWg 254 (877)
T KOG0151|consen 245 MEYEMKLGWG 254 (877)
T ss_pred eeeeeeeccc
Confidence 8888777654
No 152
>KOG1924|consensus
Probab=95.05 E-value=0.088 Score=61.23 Aligned_cols=7 Identities=14% Similarity=0.107 Sum_probs=3.1
Q ss_pred HHHHHhc
Q psy16116 220 QQMAALN 226 (612)
Q Consensus 220 ~~~~~~~ 226 (612)
+.+|+.+
T Consensus 510 e~~al~s 516 (1102)
T KOG1924|consen 510 EKQALSS 516 (1102)
T ss_pred hhhhccC
Confidence 4455443
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.93 E-value=0.056 Score=57.41 Aligned_cols=80 Identities=15% Similarity=0.309 Sum_probs=58.6
Q ss_pred ccEEEEeCCCCCCCHHHH------HHHHhcCCCCccccccCceeEEEeeCC-CCCc-eeEE--EEEeCCHHHHHHHHH-h
Q psy16116 438 QVIIRMRGLPYECTAKQV------IDFFEAGTENSCNVMDGEEGVLFVKKP-DGKA-TGDA--FVLFEKEEEADKALS-K 506 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dL------refF~~~Gi~~~~Ivd~v~~I~i~~d~-~Grs-kG~A--FV~F~s~edA~kAL~-~ 506 (612)
...+||-|||..+..+++ .+||..|| .| ..|.|-+.. .-.+ .|-+ ||+|.+.|||.+||. .
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyG----kI----~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~v 185 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYG----KI----KKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEV 185 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhcc----ce----eEEEecccccccccccccceEEEEecchHHHHHHHHHh
Confidence 356999999999888773 47999999 34 344443222 1112 2323 999999999999996 6
Q ss_pred CCcccCCEEEEEEecchHH
Q psy16116 507 HKESIGIRYIELFRSTTAE 525 (612)
Q Consensus 507 ~~~~iggR~IeV~~as~~e 525 (612)
||..++||.|+-...+.+-
T Consensus 186 Dgs~~DGr~lkatYGTTKY 204 (480)
T COG5175 186 DGSLLDGRVLKATYGTTKY 204 (480)
T ss_pred ccccccCceEeeecCchHH
Confidence 9999999999887766543
No 154
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=94.79 E-value=0.059 Score=42.67 Aligned_cols=52 Identities=19% Similarity=0.409 Sum_probs=38.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHH
Q psy16116 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL 504 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL 504 (612)
..|-|.|.+.+..+ ++..+|..|| +| ..+.+. ..+-..||.|++..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fG----eI----~~~~~~-----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFG----EI----VDIYVP-----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcC----CE----EEEEcC-----CCCcEEEEEECCHHHHHhhC
Confidence 35888898877664 4555888999 55 335543 33458999999999999996
No 155
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=94.48 E-value=0.092 Score=46.89 Aligned_cols=63 Identities=14% Similarity=0.006 Sum_probs=41.8
Q ss_pred cceecCCCH----HHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccC
Q psy16116 341 CPLVQNIWL----SLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHID 404 (612)
Q Consensus 341 ~vlV~nLp~----~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Ig 404 (612)
+|+++|+|- +.+.+.|.+.+. +.-+=+.+..|. ++.+.|||||.|.+.++|.+-.+ .+|..+.
T Consensus 3 TvMirNIPn~~t~~~L~~~l~~~~~-g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 3 TVMIRNIPNKYTQEMLIQILDEHFK-GKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcc-CcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 455666655 455555555443 334455565564 56789999999999999998876 5665553
No 156
>KOG2314|consensus
Probab=94.43 E-value=0.052 Score=61.02 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=57.9
Q ss_pred cccEEEEeCCCCCCC------HHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCc
Q psy16116 437 AQVIIRMRGLPYECT------AKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKE 509 (612)
Q Consensus 437 ~~~~VfV~nLP~s~t------e~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~ 509 (612)
-..+|+|-|.|---. ..-|.++|+++| . +....++.+..|+.+||.|++|++..+|++|++ +||+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~g----k----~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~ 128 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAG----K----IVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGK 128 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhc----c----ccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccc
Confidence 456788888886432 234667899999 3 445888889989999999999999999999996 6888
Q ss_pred ccCC-EEEEEE
Q psy16116 510 SIGI-RYIELF 519 (612)
Q Consensus 510 ~igg-R~IeV~ 519 (612)
.|+. +...|.
T Consensus 129 ~ldknHtf~v~ 139 (698)
T KOG2314|consen 129 RLDKNHTFFVR 139 (698)
T ss_pred eecccceEEee
Confidence 7764 344444
No 157
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=94.32 E-value=0.17 Score=44.10 Aligned_cols=36 Identities=31% Similarity=0.345 Sum_probs=26.7
Q ss_pred cceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116 379 NGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 379 rG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~ 414 (612)
.|.|+|.|.+.|.|++|++ ++++..-|+.|.|....
T Consensus 39 ~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 39 GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 3799999999999999998 78888889999996653
No 158
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.92 E-value=0.26 Score=40.58 Aligned_cols=55 Identities=22% Similarity=0.428 Sum_probs=42.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH
Q psy16116 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS 505 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~ 505 (612)
..|+|+|+. +.+.+||+.||..|.- . . ....|..+.|. -|-|.|.+.+.|.+||.
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~-~-~---~~~~IEWIdDt------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFD-E-E---GPFRIEWIDDT------SCNVVFKDEETAARALV 60 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcc-c-C---CCceEEEecCC------cEEEEECCHHHHHHHHH
Confidence 359999994 5899999999999920 0 0 23567887553 38999999999999995
No 159
>KOG1995|consensus
Probab=93.62 E-value=0.068 Score=57.25 Aligned_cols=80 Identities=18% Similarity=0.099 Sum_probs=56.5
Q ss_pred CCcccceecCCCHHHHHhhHhhcccccCe---------eeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCc
Q psy16116 337 PVALCPLVQNIWLSLLLNTIPGYEQVLGL---------GGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDK 405 (612)
Q Consensus 337 ~~~l~vlV~nLp~~~~e~~fkeff~~~~v---------~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Igg 405 (612)
....+++||+|+..++++++.+||..+.+ -.|.+-+++ +++.+|.|.|.|++.-.|+.|+. .+++.+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 33445667777766666655555543211 123444444 57899999999999999999998 78888888
Q ss_pred eEEEEeccCcc
Q psy16116 406 RYIEVTKANGE 416 (612)
Q Consensus 406 R~IeV~~s~~~ 416 (612)
..|+|..+...
T Consensus 144 n~ikvs~a~~r 154 (351)
T KOG1995|consen 144 NTIKVSLAERR 154 (351)
T ss_pred CCchhhhhhhc
Confidence 99999877653
No 160
>KOG2314|consensus
Probab=93.48 E-value=0.13 Score=57.84 Aligned_cols=69 Identities=13% Similarity=0.094 Sum_probs=51.1
Q ss_pred CcccceecCCCH------HHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCce
Q psy16116 338 VALCPLVQNIWL------SLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKR 406 (612)
Q Consensus 338 ~~l~vlV~nLp~------~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR 406 (612)
.+.||+|-|+|. +.++.-+...|.. +.+.+..+..+..|+.+||.|++|++..+|+.|++ +||+.|+.+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 344777777764 3344444444443 44777888878888899999999999999999997 788887754
No 161
>KOG3152|consensus
Probab=93.17 E-value=0.065 Score=55.19 Aligned_cols=71 Identities=11% Similarity=0.158 Sum_probs=56.7
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-C--------CCce----eEEEEEeCCHHHHHHH
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-D--------GKAT----GDAFVLFEKEEEADKA 503 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~--------Grsk----G~AFV~F~s~edA~kA 503 (612)
...+||++++|....-..||++|+.|| .+.+|.|-... . |+++ -.|+|+|.+...|.+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yG--------eVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~i 144 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYG--------EVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRI 144 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhcc--------ccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHH
Confidence 346899999999999999999999999 45677775332 2 2333 3589999999999988
Q ss_pred HH-hCCcccCCEE
Q psy16116 504 LS-KHKESIGIRY 515 (612)
Q Consensus 504 L~-~~~~~iggR~ 515 (612)
.+ +|+..|||+.
T Consensus 145 Ae~Lnn~~Iggkk 157 (278)
T KOG3152|consen 145 AELLNNTPIGGKK 157 (278)
T ss_pred HHHhCCCccCCCC
Confidence 76 6999999974
No 162
>KOG1855|consensus
Probab=93.08 E-value=0.11 Score=57.00 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=54.1
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeC---C---CCCce--------eEEEEEeCCHHHHHH
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKK---P---DGKAT--------GDAFVLFEKEEEADK 502 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d---~---~Grsk--------G~AFV~F~s~edA~k 502 (612)
..++|.+-|||-+-.-+.|.++|+.+| .++.|+|+.- + .|.++ -.|+|+|..-+.|+|
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G--------~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~K 301 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVG--------SIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARK 301 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhccc--------ceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHH
Confidence 568999999999999999999999999 5678998754 2 33333 459999999999999
Q ss_pred HHHhCCcc
Q psy16116 503 ALSKHKES 510 (612)
Q Consensus 503 AL~~~~~~ 510 (612)
|.++.+..
T Consensus 302 A~e~~~~e 309 (484)
T KOG1855|consen 302 ARELLNPE 309 (484)
T ss_pred HHHhhchh
Confidence 99875443
No 163
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=92.85 E-value=0.19 Score=45.13 Aligned_cols=74 Identities=8% Similarity=-0.058 Sum_probs=43.1
Q ss_pred ccceecCCCHHHHHhhHhhcccccCeeeEE-EeeC-------CCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEE-E
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQVLGLGGVA-LCLS-------AFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIE-V 410 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~~~v~~V~-ii~d-------~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~Ie-V 410 (612)
..|.|.|.|.+....-++.|...+.+.+.. +.++ +.-.....-.|+|+++.+|++||++||..++|..+- |
T Consensus 7 ~wVtVFGfp~~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mvGV 86 (100)
T PF05172_consen 7 TWVTVFGFPPSASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMVGV 86 (100)
T ss_dssp CEEEEE---GGGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEEEE
T ss_pred eEEEEEccCHHHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEEEE
Confidence 356677777776655555544444343332 1111 111223478999999999999999999999987653 5
Q ss_pred ecc
Q psy16116 411 TKA 413 (612)
Q Consensus 411 ~~s 413 (612)
..+
T Consensus 87 ~~~ 89 (100)
T PF05172_consen 87 KPC 89 (100)
T ss_dssp EE-
T ss_pred EEc
Confidence 444
No 164
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.77 E-value=0.35 Score=46.21 Aligned_cols=58 Identities=22% Similarity=0.189 Sum_probs=43.5
Q ss_pred HHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEEEecchHHH
Q psy16116 454 QVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEV 526 (612)
Q Consensus 454 dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV~~as~~e~ 526 (612)
+|.+.|+.|| ++ .-||+.- |.-+|+|.+-+.|-+||.+++..++|+.|.|+.-++.-+
T Consensus 52 ~ll~~~~~~G----ev----vLvRfv~-------~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFAQYG----EV----VLVRFVG-------DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHCCS-----E----CEEEEET-------TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE------
T ss_pred HHHHHHHhCC----ce----EEEEEeC-------CeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccHH
Confidence 7788899999 22 2355542 468999999999999999999999999999998776543
No 165
>KOG2202|consensus
Probab=91.40 E-value=0.12 Score=53.38 Aligned_cols=67 Identities=21% Similarity=0.209 Sum_probs=49.1
Q ss_pred HHHHHHHh-cCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecchHHHH
Q psy16116 453 KQVIDFFE-AGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTTAEVQ 527 (612)
Q Consensus 453 ~dLrefF~-~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~~e~~ 527 (612)
+||-..|+ +|| +++.+.|..+-.---+|-.||.|..+|+|++|++ +|+-.++||.|....+.-.++.
T Consensus 83 Ed~f~E~~~kyg--------Eiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~r 151 (260)
T KOG2202|consen 83 EDVFTELEDKYG--------EIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFR 151 (260)
T ss_pred HHHHHHHHHHhh--------hhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchh
Confidence 44444555 778 3455666544333578999999999999999996 7999999999887776544443
No 166
>KOG2202|consensus
Probab=91.02 E-value=0.12 Score=53.19 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=46.7
Q ss_pred HhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccch
Q psy16116 353 LNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDF 418 (612)
Q Consensus 353 e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~ 418 (612)
+++|.++... +.+.++.+..+-.-.-.|..||.|.++|+|++|++ +|+.+++|+.|-...+.-..|
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~ 150 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDF 150 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCch
Confidence 4444444422 44667766655433558999999999999999997 899999999887655544333
No 167
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=90.80 E-value=0.97 Score=37.24 Aligned_cols=48 Identities=19% Similarity=0.083 Sum_probs=39.3
Q ss_pred ecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH
Q psy16116 344 VQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK 397 (612)
Q Consensus 344 V~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~ 397 (612)
|.+|+.+++..||.+||.......|.-+.|. -|=|.|.|.+.|.+||.
T Consensus 13 vd~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 13 VDELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALV 60 (62)
T ss_pred CCCCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHH
Confidence 6789999999999999765456677776652 46899999999999996
No 168
>KOG4660|consensus
Probab=90.74 E-value=0.3 Score=55.09 Aligned_cols=68 Identities=21% Similarity=0.320 Sum_probs=50.3
Q ss_pred CCcEeecCCCCCCCcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCcc
Q psy16116 325 TPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHI 403 (612)
Q Consensus 325 ~~tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~I 403 (612)
..+|+|.+++ ..++.+++..+|..|++ |.+|+.... .+|..||+|-+..+|+.||+ +++..|
T Consensus 75 ~~~L~v~nl~----------~~Vsn~~L~~~f~~yGe---ir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~ 137 (549)
T KOG4660|consen 75 QGTLVVFNLP----------RSVSNDTLLRIFGAYGE---IREIRETPN----KRGIVFVEFYDVRDAERALKALNRREI 137 (549)
T ss_pred cceEEEEecC----------CcCCHHHHHHHHHhhcc---hhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHh
Confidence 4567655533 33445777777777765 667776443 46799999999999999997 788888
Q ss_pred CceEEE
Q psy16116 404 DKRYIE 409 (612)
Q Consensus 404 ggR~Ie 409 (612)
.|+.|.
T Consensus 138 ~~~~~k 143 (549)
T KOG4660|consen 138 AGKRIK 143 (549)
T ss_pred hhhhhc
Confidence 888776
No 169
>KOG0112|consensus
Probab=90.59 E-value=0.15 Score=60.28 Aligned_cols=114 Identities=16% Similarity=0.031 Sum_probs=81.5
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL-SKHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL-~~~~~~iggR~ 515 (612)
...+||++||+..+++.+|+..|..+| .++.|.|-.-.-+.-.-||||.|-+-+.+-+|. ++.+..|+.-.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~g--------kve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~ 442 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESG--------KVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGT 442 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhc--------cccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCc
Confidence 468899999999999999999999999 345666654445566679999999888777776 34444433211
Q ss_pred EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116 516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM 595 (612)
Q Consensus 516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL 595 (612)
+.+. +.+. .+...+.+++++|..-+....|
T Consensus 443 ~r~g-----------------------------------------------lG~~---kst~ttr~~sgglg~w~p~~~l 472 (975)
T KOG0112|consen 443 HRIG-----------------------------------------------LGQP---KSTPTTRLQSGGLGPWSPVSRL 472 (975)
T ss_pred cccc-----------------------------------------------cccc---ccccceeeccCCCCCCChHHHH
Confidence 1100 0000 0124567999999999999999
Q ss_pred HHhhccCCcEeEe
Q psy16116 596 DIFFVGQQDSFVH 608 (612)
Q Consensus 596 kefFs~~gdI~~~ 608 (612)
...|..||.|...
T Consensus 473 ~r~fd~fGpir~I 485 (975)
T KOG0112|consen 473 NREFDRFGPIRII 485 (975)
T ss_pred HHHhhccCcceee
Confidence 9999999977653
No 170
>KOG4849|consensus
Probab=90.49 E-value=13 Score=40.38 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=22.2
Q ss_pred CCCCcccceEEecCHHHHHHHHHHHhhcc
Q psy16116 88 QGQPSGEAFIQMDSEHSAYLAAQLRHNRN 116 (612)
Q Consensus 88 qg~~sg~~f~~~~~~~~~~~~~~~~~~~~ 116 (612)
.|+--|=|.+.+.|+.+.++.-..--+|.
T Consensus 120 NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~ 148 (498)
T KOG4849|consen 120 NGQSKGYALLVLNSDAAVKQTMEILPTKT 148 (498)
T ss_pred CCcccceEEEEecchHHHHHHHHhcccce
Confidence 48888999999999998887765544443
No 171
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=90.26 E-value=0.77 Score=49.11 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=49.6
Q ss_pred EeecCCCCCCCcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCC-CCCC-cceE--EEEeCCHHHHHHHHH-hCCCc
Q psy16116 328 VYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSA-FGRR-NGEA--IVRFIDQEHRDMALK-RHKHH 402 (612)
Q Consensus 328 vfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~-~Grs-rG~A--FVeF~S~EdA~kAL~-~ng~~ 402 (612)
+||+.++.-..+ =.+++.=.-.+||..|+. +..|.+-+.. .-.+ .|.+ ||+|.+.|||.+||. -++..
T Consensus 117 vYVigi~pkva~----Ee~~~vLk~~eyFGQyGk---I~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 117 VYVIGIPPKVAD----EEVAPVLKRHEYFGQYGK---IKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred eEEecCCCCCCc----ccccccccchhhhhhccc---eeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 666665543332 122222334677777765 5555542221 1111 2323 999999999999996 79999
Q ss_pred cCceEEEEeccC
Q psy16116 403 IDKRYIEVTKAN 414 (612)
Q Consensus 403 IggR~IeV~~s~ 414 (612)
++||.|+....+
T Consensus 190 ~DGr~lkatYGT 201 (480)
T COG5175 190 LDGRVLKATYGT 201 (480)
T ss_pred ccCceEeeecCc
Confidence 999999876554
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=90.08 E-value=0.84 Score=43.68 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=39.9
Q ss_pred HHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116 352 LLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 352 ~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~ 415 (612)
..+.+..|...|.+.-|+++. |.-.|+|.+-+.|.+||++++..++|+.|.|+.-+.
T Consensus 50 ~~~ll~~~~~~GevvLvRfv~-------~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 50 MDELLQKFAQYGEVVLVRFVG-------DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHHCCS-ECEEEEET-------TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred HHHHHHHHHhCCceEEEEEeC-------CeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 344444444433355555542 466999999999999999999999999999976654
No 173
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=90.07 E-value=0.28 Score=44.23 Aligned_cols=66 Identities=21% Similarity=0.168 Sum_probs=30.4
Q ss_pred ecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHh---C---CCccCceEEEEecc
Q psy16116 344 VQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKR---H---KHHIDKRYIEVTKA 413 (612)
Q Consensus 344 V~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~---n---g~~IggR~IeV~~s 413 (612)
+.|+..+.++++|++.|...+ .|..+.-..|.. .|||.|.+.++|++|++. . +..|.+..+.+...
T Consensus 6 ~~g~~~~~~re~iK~~f~~~g--~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 6 FSGLGEPTSREDIKEAFSQFG--EVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp EEE--SS--HHHHHHHT-SS----EEEEE--TT-S--EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred EecCCCCcCHHHHHHHHHhcC--CcceEEecCCCC--EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 444444555666665554322 444544444533 789999999999999973 2 33455555555443
No 174
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=89.71 E-value=0.6 Score=36.92 Aligned_cols=49 Identities=8% Similarity=0.076 Sum_probs=29.9
Q ss_pred eecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHH
Q psy16116 343 LVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMAL 396 (612)
Q Consensus 343 lV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL 396 (612)
.|.|.+.+..+.-++.|...|.+..+.+- ...-..||+|+++.+|++||
T Consensus 5 ~V~Gf~~~~~~~vl~~F~~fGeI~~~~~~-----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 5 SVSGFPPDLAEEVLEHFASFGEIVDIYVP-----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEeECchHHHHHHHHHHhcCCEEEEEcC-----CCCcEEEEEECCHHHHHhhC
Confidence 34555555444333333333346666552 23348999999999999996
No 175
>KOG4676|consensus
Probab=88.79 E-value=0.66 Score=50.50 Aligned_cols=159 Identities=11% Similarity=0.074 Sum_probs=94.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCC----CCceeEEEEEeCCHHHHHHHHHhCCcccCCE
Q psy16116 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPD----GKATGDAFVLFEKEEEADKALSKHKESIGIR 514 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~----GrskG~AFV~F~s~edA~kAL~~~~~~iggR 514 (612)
..|.|-||..+++.+.++.+|..+| ++..+.|.-..+ .-....|||.|.+...+..|-.+-+..+=+|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lG--------kI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdr 79 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLG--------KIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDR 79 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhcc--------ccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeee
Confidence 4799999999999999999999999 456677754321 2356789999999999999988866666678
Q ss_pred EEEEEecchH--HHHHHhhhhcCCC-CCCCCCCCCCCCCCcccccccccCCCCC-----CCCcccccC--CCcccEEEEc
Q psy16116 515 YIELFRSTTA--EVQQVLNKTMELP-KNNSLTSSNNGLSAQQPMLSHLAQVPVP-----YLPQHIITS--GTRKDCIRLR 584 (612)
Q Consensus 515 ~IeV~~as~~--e~~~~~~~~~~~~-~~~~~~~e~~~~s~~~~~~~~~s~~p~~-----~~~~~~~~~--~~~~~~VfVr 584 (612)
-+-|.+.... ....+........ .+...++++ ..-+.+.+ ..-.+.|.. .++.....- .....+++|.
T Consensus 80 aliv~p~~~~~~p~r~af~~l~~~navprll~pdg-~Lp~~~~l-t~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~ 157 (479)
T KOG4676|consen 80 ALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDG-VLPGDRPL-TKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQ 157 (479)
T ss_pred eEEEEecCCCCCccHHHHHhcCcccccccccCCCC-ccCCCCcc-ccccCCccceecCCCCChHhhhhhhHHHHhhhhhh
Confidence 8877776321 1111222111000 000111110 00000000 000111110 111100000 1134689999
Q ss_pred CCCccCCHHHHHHhhccCCcEeE
Q psy16116 585 GLPYEALCILMDIFFVGQQDSFV 607 (612)
Q Consensus 585 NLPf~vTeeDLkefFs~~gdI~~ 607 (612)
+|+-.+...++-+.|..+|++.+
T Consensus 158 sl~~~~~l~e~~e~f~r~Gev~y 180 (479)
T KOG4676|consen 158 SLISAAILPESGESFERKGEVSY 180 (479)
T ss_pred cchhhhcchhhhhhhhhcchhhh
Confidence 99999999999999999887654
No 176
>KOG4676|consensus
Probab=88.19 E-value=0.33 Score=52.76 Aligned_cols=161 Identities=16% Similarity=0.093 Sum_probs=106.1
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCC----CCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFG----RRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~G----rsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~ 415 (612)
.+-|.||..+++.+.+..+|.. |.|.++.|.-+.+- -..-.|||.|.+...+..|.-+.+..+-++.+-|...-.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~ 88 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGD 88 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCC
Confidence 3458899999998888875554 55788887543321 235689999999999999998777666666655544322
Q ss_pred ----cch--hhccCCCC----------------c--chh---hhc-----c--------CCcccEEEEeCCCCCCCHHHH
Q psy16116 416 ----EDF--INVAGGNN----------------N--EAQ---AFL-----T--------RGAQVIIRMRGLPYECTAKQV 455 (612)
Q Consensus 416 ----~e~--~~~~g~~~----------------~--e~~---~~~-----~--------~~~~~~VfV~nLP~s~te~dL 455 (612)
.++ ......+. . ... ..+ + .+-..+++|.+|+..+...++
T Consensus 89 ~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~ 168 (479)
T KOG4676|consen 89 EVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPES 168 (479)
T ss_pred CCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhh
Confidence 111 11000000 0 000 000 0 112477999999999999999
Q ss_pred HHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccC
Q psy16116 456 IDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIG 512 (612)
Q Consensus 456 refF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~ig 512 (612)
.+.|..+| +| .-.++ ..|-..-+|-|.|........||..+|..+.
T Consensus 169 ~e~f~r~G----ev----~ya~~---ask~~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 169 GESFERKG----EV----SYAHT---ASKSRSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred hhhhhhcc----hh----hhhhh---hccCCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 99999999 22 22333 3455566888999999999999998876654
No 177
>KOG4285|consensus
Probab=87.59 E-value=1.3 Score=46.92 Aligned_cols=76 Identities=22% Similarity=0.264 Sum_probs=57.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE-EE
Q psy16116 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRY-IE 517 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~-Ie 517 (612)
.-|-|-|+|..... -|...|+.|| +|| +.+...+| -+-+|.|.+.-+|+|||.+|+..|+|-. |-
T Consensus 198 ~WVTVfGFppg~~s-~vL~~F~~cG----~Vv------khv~~~ng---NwMhirYssr~~A~KALskng~ii~g~vmiG 263 (350)
T KOG4285|consen 198 TWVTVFGFPPGQVS-IVLNLFSRCG----EVV------KHVTPSNG---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIG 263 (350)
T ss_pred ceEEEeccCccchh-HHHHHHHhhC----eee------eeecCCCC---ceEEEEecchhHHHHhhhhcCeeeccceEEe
Confidence 44778888876554 5666889999 563 33333344 5899999999999999999999999865 88
Q ss_pred EEecchHHHHH
Q psy16116 518 LFRSTTAEVQQ 528 (612)
Q Consensus 518 V~~as~~e~~~ 528 (612)
|..+..+....
T Consensus 264 VkpCtDksvi~ 274 (350)
T KOG4285|consen 264 VKPCTDKSVIN 274 (350)
T ss_pred eeecCCHHHhc
Confidence 99987766544
No 178
>KOG1996|consensus
Probab=86.82 E-value=1.3 Score=46.63 Aligned_cols=63 Identities=14% Similarity=0.041 Sum_probs=42.7
Q ss_pred HHHHhhHh-hcccccCeeeEEEeeCCCC--CCcceEEEEeCCHHHHHHHH-HhCCCccCceEEEEec
Q psy16116 350 SLLLNTIP-GYEQVLGLGGVALCLSAFG--RRNGEAIVRFIDQEHRDMAL-KRHKHHIDKRYIEVTK 412 (612)
Q Consensus 350 ~~~e~~fk-eff~~~~v~~V~ii~d~~G--rsrG~AFVeF~S~EdA~kAL-~~ng~~IggR~IeV~~ 412 (612)
+++++..+ +|.+-+.+..|.|...+.- ...---||+|+..++|-+|+ .+||.|+|||.|.-..
T Consensus 297 ~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 297 EELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 44555555 4555455666665554321 11224699999999999999 5899999999876543
No 179
>KOG0151|consensus
Probab=86.50 E-value=0.93 Score=52.60 Aligned_cols=71 Identities=17% Similarity=0.140 Sum_probs=52.9
Q ss_pred eecCCCHHHHHhhHh-hcccccCeeeEEEeeCCC----CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEecc
Q psy16116 343 LVQNIWLSLLLNTIP-GYEQVLGLGGVALCLSAF----GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKA 413 (612)
Q Consensus 343 lV~nLp~~~~e~~fk-eff~~~~v~~V~ii~d~~----GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s 413 (612)
+++||+.+.+++++- .|+..+.+.+|+|+-... -|.+-+|||-|-+..||++|++ +++..+.++.+++-++
T Consensus 178 yv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg 254 (877)
T KOG0151|consen 178 YVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG 254 (877)
T ss_pred eeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence 366777777766665 566667788999876542 2456799999999999999997 7777777777766444
No 180
>KOG1996|consensus
Probab=86.23 E-value=1.7 Score=45.84 Aligned_cols=61 Identities=21% Similarity=0.177 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCCCccccccCceeEEEeeCCCC--CceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEe
Q psy16116 452 AKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDG--KATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFR 520 (612)
Q Consensus 452 e~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~G--rskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~ 520 (612)
++++++-.++|| .+..|.|..+++- ---=--||+|...++|.+|+- +||.++|||.+.-.-
T Consensus 300 ede~keEceKyg--------~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYG--------KVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhc--------ceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 567888889999 3344555444321 111237999999999999995 799999999876543
No 181
>KOG2193|consensus
Probab=84.84 E-value=1.2 Score=48.96 Aligned_cols=69 Identities=22% Similarity=0.237 Sum_probs=53.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh-C-CcccCCEEEE
Q psy16116 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSK-H-KESIGIRYIE 517 (612)
Q Consensus 440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~-~-~~~iggR~Ie 517 (612)
.+|++||...++-.|+...|.+..+ ...+-.++ ..||+||...+..-+.+|++. + +..+.|+.++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~-------~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e 69 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKI-------PGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQE 69 (584)
T ss_pred cccccccCCCCChHHHHHHhccccC-------CCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceee
Confidence 4899999999999999999987652 12222222 468999999999999999984 3 3567788887
Q ss_pred EEec
Q psy16116 518 LFRS 521 (612)
Q Consensus 518 V~~a 521 (612)
|..+
T Consensus 70 ~~~s 73 (584)
T KOG2193|consen 70 VEHS 73 (584)
T ss_pred ccch
Confidence 7644
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=84.65 E-value=2.8 Score=36.70 Aligned_cols=53 Identities=15% Similarity=0.364 Sum_probs=38.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSK 506 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~ 506 (612)
+++.+|. .|......||.++|+.|| .| .|..+.| .-|||...+.+.+..|+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG----~I-----~VsWi~d------TSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFG----QI-----YVSWIND------TSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCC----CE-----EEEEECT------TEEEEEECCCHHHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCC----cE-----EEEEEcC------CcEEEEeecHHHHHHHHHH
Confidence 4566666 999999999999999999 33 3555533 2599999999999998863
No 183
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=84.55 E-value=1.7 Score=38.26 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=45.5
Q ss_pred EEEEeCCHHHHHHHHHh--CCCccCceEEEEecc--CccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHH
Q psy16116 382 AIVRFIDQEHRDMALKR--HKHHIDKRYIEVTKA--NGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVID 457 (612)
Q Consensus 382 AFVeF~S~EdA~kAL~~--ng~~IggR~IeV~~s--~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLre 457 (612)
|.|+|..++=|++-+++ +.-.+++..++|..+ ......+. + ....-..++|.|.|||...++++|++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~--------q-v~~~vs~rtVlvsgip~~l~ee~l~D 71 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKF--------Q-VFSGVSKRTVLVSGIPDVLDEEELRD 71 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEE--------E-EEEcccCCEEEEeCCCCCCChhhhee
Confidence 68999999999999975 344577777666432 21110000 0 00112346799999999999999998
Q ss_pred HHh
Q psy16116 458 FFE 460 (612)
Q Consensus 458 fF~ 460 (612)
..+
T Consensus 72 ~Le 74 (88)
T PF07292_consen 72 KLE 74 (88)
T ss_pred eEE
Confidence 643
No 184
>KOG4285|consensus
Probab=83.23 E-value=5.3 Score=42.48 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=48.2
Q ss_pred cceecCCCHH---HHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceE-EEEeccCcc
Q psy16116 341 CPLVQNIWLS---LLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRY-IEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~---~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~-IeV~~s~~~ 416 (612)
-|-|.+.+.. .+...|..|+. |.+.+ .++.--+-+|.|.+.-+|++||.+++..|+|.. |-|..|..+
T Consensus 199 WVTVfGFppg~~s~vL~~F~~cG~---Vvkhv-----~~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 199 WVTVFGFPPGQVSIVLNLFSRCGE---VVKHV-----TPSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred eEEEeccCccchhHHHHHHHhhCe---eeeee-----cCCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCH
Confidence 4445555554 45666777775 33322 232224789999999999999999999999865 677887765
Q ss_pred ch
Q psy16116 417 DF 418 (612)
Q Consensus 417 e~ 418 (612)
..
T Consensus 271 sv 272 (350)
T KOG4285|consen 271 SV 272 (350)
T ss_pred HH
Confidence 43
No 185
>KOG2591|consensus
Probab=81.28 E-value=4.8 Score=45.87 Aligned_cols=69 Identities=17% Similarity=0.330 Sum_probs=50.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH---hCCcccCCE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS---KHKESIGIR 514 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~---~~~~~iggR 514 (612)
.+.|.||-||.++-.++|+.+|+.-. |. ...++.+-.+. --||+|++.+||++|.+ ...+.|.|+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~en---cP---k~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgK 242 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGEN---CP---KVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGK 242 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCC---CC---CceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCc
Confidence 46789999999999999999998633 21 22335554332 28999999999999985 245667777
Q ss_pred EEEE
Q psy16116 515 YIEL 518 (612)
Q Consensus 515 ~IeV 518 (612)
.|--
T Consensus 243 pImA 246 (684)
T KOG2591|consen 243 PIMA 246 (684)
T ss_pred chhh
Confidence 7643
No 186
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=79.10 E-value=2.4 Score=39.50 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=69.2
Q ss_pred CCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchhhccCCC
Q psy16116 346 NIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425 (612)
Q Consensus 346 nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~~~~g~~ 425 (612)
+++.+.+.+.++..... ..++.+..- ..|+..+.|.+.+|++++++.....+++..+.+..-+...-..
T Consensus 28 ~~~~~~l~~~l~~~W~~--~~~~~i~~l----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~----- 96 (153)
T PF14111_consen 28 PISLSALEQELAKIWKL--KGGVKIRDL----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPS----- 96 (153)
T ss_pred CCCHHHHHHHHHHHhCC--CCcEEEEEe----CCCeEEEEEEeccceeEEEecccccccccchhhhhhccccccc-----
Confidence 46678899999876542 223444322 3479999999999999999988888888888776554321000
Q ss_pred CcchhhhccCCcccEEEEeCCCCC-CCHHHHHHHHhcCC
Q psy16116 426 NNEAQAFLTRGAQVIIRMRGLPYE-CTAKQVIDFFEAGT 463 (612)
Q Consensus 426 ~~e~~~~~~~~~~~~VfV~nLP~s-~te~dLrefF~~~G 463 (612)
.... .....=|.|.|||.. .+++-++++-+.+|
T Consensus 97 ~~~~-----~~~~vWVri~glP~~~~~~~~~~~i~~~iG 130 (153)
T PF14111_consen 97 EVKF-----EHIPVWVRIYGLPLHLWSEEILKAIGSKIG 130 (153)
T ss_pred ccce-----eccchhhhhccCCHHHhhhHHHHHHHHhcC
Confidence 0000 001234899999999 57788889999999
No 187
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=77.75 E-value=10 Score=31.66 Aligned_cols=53 Identities=9% Similarity=0.119 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEE
Q psy16116 449 ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIE 517 (612)
Q Consensus 449 s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~Ie 517 (612)
.++-+|++.-++.|+. .+|..|++| =||.|.+.++|+++.. .|+..+.+..+.
T Consensus 11 ~~~v~d~K~~Lr~y~~-----------~~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-----------DRIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc-----------ceEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 4678999999999982 456667666 5999999999999997 477777665543
No 188
>KOG1855|consensus
Probab=77.45 E-value=2.3 Score=47.03 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=46.4
Q ss_pred ccceecCCCHHHHHhhHhhccc-ccCeeeEEEeeC---C-C--CCCc--------ceEEEEeCCHHHHHHHHHhCCC
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQ-VLGLGGVALCLS---A-F--GRRN--------GEAIVRFIDQEHRDMALKRHKH 401 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~-~~~v~~V~ii~d---~-~--Grsr--------G~AFVeF~S~EdA~kAL~~ng~ 401 (612)
.+|++.|||.+-..+-+.+.|. .+.|..|+|++. + + |..+ -+|+|+|+..+.|++|-++.+.
T Consensus 232 rtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 232 RTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 4788999999877666665544 467999999876 2 2 3333 3589999999999999986543
No 189
>KOG2193|consensus
Probab=77.26 E-value=0.53 Score=51.61 Aligned_cols=122 Identities=14% Similarity=0.130 Sum_probs=88.5
Q ss_pred CcceEEEEeCCHHHHHHHHH-hCC-CccCceEEEEeccCccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHH
Q psy16116 378 RNGEAIVRFIDQEHRDMALK-RHK-HHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQV 455 (612)
Q Consensus 378 srG~AFVeF~S~EdA~kAL~-~ng-~~IggR~IeV~~s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dL 455 (612)
..||+||...+..-|.+|++ .++ ..+.|..++|..+-... ...+.+-|+|+|....++-+
T Consensus 36 k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk------------------qrsrk~Qirnippql~wevl 97 (584)
T KOG2193|consen 36 KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK------------------QRSRKIQIRNIPPQLQWEVL 97 (584)
T ss_pred ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH------------------HHhhhhhHhcCCHHHHHHHH
Confidence 35899999999999999998 444 35667777775443221 11234889999999999999
Q ss_pred HHHHhcCCCCccccccCceeEEEe-eCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecchHHHHH
Q psy16116 456 IDFFEAGTENSCNVMDGEEGVLFV-KKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTTAEVQQ 528 (612)
Q Consensus 456 refF~~~Gi~~~~Ivd~v~~I~i~-~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~~e~~~ 528 (612)
-.+...|| .++.+..+ +|. -+-.--|++.+.+.++.||. +++..|.+..+.|.....++...
T Consensus 98 d~Ll~qyg--------~ve~~eqvnt~~---etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq~~q 161 (584)
T KOG2193|consen 98 DSLLAQYG--------TVENCEQVNTDS---ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQNAQ 161 (584)
T ss_pred HHHHhccC--------CHhHhhhhccch---HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhhhhc
Confidence 99999999 23444433 232 12234477899999999996 58888888888888876665443
No 190
>KOG3671|consensus
Probab=72.42 E-value=1.2e+02 Score=34.58 Aligned_cols=13 Identities=15% Similarity=-0.010 Sum_probs=7.7
Q ss_pred cCCCHHHHHhhHh
Q psy16116 345 QNIWLSLLLNTIP 357 (612)
Q Consensus 345 ~nLp~~~~e~~fk 357 (612)
++--.+++-+.||
T Consensus 491 ~~dgR~~LmaqIR 503 (569)
T KOG3671|consen 491 SGDGRDALMAQIR 503 (569)
T ss_pred CcccHHHHHHHHH
Confidence 3334466777776
No 191
>KOG3895|consensus
Probab=72.07 E-value=47 Score=36.42 Aligned_cols=92 Identities=24% Similarity=0.252 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcc
Q psy16116 211 LMLMNQIAAQQMAALNKPHNMALNGHTPTLIPAPSPNALMPPPLNSKSTTIPTNLPALPAVPTSGGYFPQFQLPINMNTA 290 (612)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~p~~~~~~~~~~~~~~~p~~p~~~~~~p~~~~~~~~~~~ 290 (612)
.+++.-.---.||-+-.+...+.+|+.|++.+-+++... |.|++ ..++ +-.||.+|+.+|-.|.-.-...--+.
T Consensus 379 rql~~~Lvvskmaq~l~~~~~a~sP~rp~t~q~~~~~~~-~g~a~-~~pt----~~~PprPppqggppP~g~~~~p~~~~ 452 (488)
T KOG3895|consen 379 RQLISELVVSKMAQLLTRPIAAESPARPTTSQVPSGGGL-PGPAQ-ASPT----RRLPPRPPPQGGPPPRGHMSDPVGSR 452 (488)
T ss_pred HHHHHHHHHHHhhhccCCCCCCCCCCCCcccccCCCCCC-CCCCC-CCCC----CCCCCCCCCCCCCCCccccCCccccc
Confidence 333333334456666666566677777766544444322 21211 1111 11124444555544432222223344
Q ss_pred cccCCCCCCccccCCCCCC
Q psy16116 291 HLLQPMNTPFFFNMPRMPV 309 (612)
Q Consensus 291 ~~~~~~~~p~~~~~P~~p~ 309 (612)
|+.+ +++|..++.+..+.
T Consensus 453 hl~~-~gppq~prt~sr~s 470 (488)
T KOG3895|consen 453 HLDH-DGPPQIPRTGSRES 470 (488)
T ss_pred cCCC-CCCCCCCCCCCCCC
Confidence 5555 55555554444333
No 192
>PHA03378 EBNA-3B; Provisional
Probab=70.62 E-value=27 Score=41.00 Aligned_cols=12 Identities=33% Similarity=0.326 Sum_probs=5.1
Q ss_pred CCCCCCCCCCCC
Q psy16116 260 TIPTNLPALPAV 271 (612)
Q Consensus 260 ~~~~~~~~~p~~ 271 (612)
..+|.+|+|+.+
T Consensus 772 gaptP~~pPq~~ 783 (991)
T PHA03378 772 GAPTPQPPPQAP 783 (991)
T ss_pred CCCCCCCCCCCC
Confidence 344444444433
No 193
>KOG1985|consensus
Probab=69.92 E-value=46 Score=40.04 Aligned_cols=20 Identities=5% Similarity=0.129 Sum_probs=10.6
Q ss_pred ccEEEEeCCCCCCCHHHHHH
Q psy16116 438 QVIIRMRGLPYECTAKQVID 457 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLre 457 (612)
-..+||-.++.++.+.-..+
T Consensus 295 avy~FliDVS~~a~ksG~L~ 314 (887)
T KOG1985|consen 295 AVYVFLIDVSISAIKSGYLE 314 (887)
T ss_pred ceEEEEEEeehHhhhhhHHH
Confidence 34566666666555553333
No 194
>KOG0115|consensus
Probab=67.23 E-value=4.9 Score=41.81 Aligned_cols=46 Identities=20% Similarity=0.300 Sum_probs=36.2
Q ss_pred HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHh
Q psy16116 350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKR 398 (612)
Q Consensus 350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ 398 (612)
+.++..|+.|+. +...+++.|..|+..|.++|+|...-.+.+|+.+
T Consensus 46 dll~~~f~~fg~---~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr 91 (275)
T KOG0115|consen 46 DLLEQAFRRFGP---IERAVAKVDDRGKPTREGIVEFAKKPNARKAARR 91 (275)
T ss_pred HHHHHhhhhcCc---cchheeeecccccccccchhhhhcchhHHHHHHH
Confidence 555666666654 5555666777899999999999999999999974
No 195
>KOG2068|consensus
Probab=66.90 E-value=2.1 Score=45.97 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=54.8
Q ss_pred cEEEEeCCCCCCCHHHHH---HHHhcCCCCccccccCceeEEEeeCCC--CC--ceeEEEEEeCCHHHHHHHHH-hCCcc
Q psy16116 439 VIIRMRGLPYECTAKQVI---DFFEAGTENSCNVMDGEEGVLFVKKPD--GK--ATGDAFVLFEKEEEADKALS-KHKES 510 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLr---efF~~~Gi~~~~Ivd~v~~I~i~~d~~--Gr--skG~AFV~F~s~edA~kAL~-~~~~~ 510 (612)
..+||-||+....++++. ++|..|| ++..|.+-.+.. .. ..--+||+|...|||..||. .++..
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqyg--------ki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~ 149 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYG--------KINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFV 149 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccc--------cceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHH
Confidence 558899999887766654 4888888 345566555441 11 12228999999999999996 69999
Q ss_pred cCCEEEEEEecch
Q psy16116 511 IGIRYIELFRSTT 523 (612)
Q Consensus 511 iggR~IeV~~as~ 523 (612)
++||.++....+.
T Consensus 150 ~dg~~lka~~gtt 162 (327)
T KOG2068|consen 150 DDGRALKASLGTT 162 (327)
T ss_pred hhhhhhHHhhCCC
Confidence 9998866555543
No 196
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=64.98 E-value=6.9 Score=38.50 Aligned_cols=70 Identities=10% Similarity=-0.032 Sum_probs=39.3
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhc-CCCCccccccCceeEEEeeCC--CCC-ceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKP--DGK-ATGDAFVLFEKEEEADKALS-KHKESI 511 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~-~Gi~~~~Ivd~v~~I~i~~d~--~Gr-skG~AFV~F~s~edA~kAL~-~~~~~i 511 (612)
....|.||+||++.||+++.+.++. ++ ... ....+.-..+. .+. .-.-|||.|.+.+++..-.. .+|+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~----~~~-~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLP----DEW-DWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--S----SE----EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcc----ccc-ceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 3457999999999999998885554 43 000 01223322222 121 34569999999999877775 466543
No 197
>KOG0260|consensus
Probab=63.74 E-value=1.3e+02 Score=37.96 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=4.1
Q ss_pred cHHHHHHHhh
Q psy16116 61 LVEHILEFLG 70 (612)
Q Consensus 61 ~~~~il~f~~ 70 (612)
++|.+.+-|=
T Consensus 1374 SfEetv~il~ 1383 (1605)
T KOG0260|consen 1374 SFEETVDILM 1383 (1605)
T ss_pred cHHHHHHHHH
Confidence 4444444443
No 198
>KOG2135|consensus
Probab=63.60 E-value=4.2 Score=45.49 Aligned_cols=72 Identities=21% Similarity=0.304 Sum_probs=56.5
Q ss_pred cEEEEeCCCCCC-CHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEE
Q psy16116 439 VIIRMRGLPYEC-TAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIE 517 (612)
Q Consensus 439 ~~VfV~nLP~s~-te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~Ie 517 (612)
..+-+.-.|+.. +-.+|...|..|| +| +.|.+-+. .--|.|+|.+..+|-+|-.-++..|++|.|.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG----~i----~n~qv~~~-----~~~a~vTF~t~aeag~a~~s~~avlnnr~iK 439 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFG----EI----ENIQVDYS-----SLHAVVTFKTRAEAGEAYASHGAVLNNRFIK 439 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcC----cc----ccccccCc-----hhhheeeeeccccccchhccccceecCceeE
Confidence 345566667775 4689999999999 44 44665433 2358999999999999988899999999999
Q ss_pred EEecch
Q psy16116 518 LFRSTT 523 (612)
Q Consensus 518 V~~as~ 523 (612)
|+....
T Consensus 440 l~whnp 445 (526)
T KOG2135|consen 440 LFWHNP 445 (526)
T ss_pred EEEecC
Confidence 998765
No 199
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=61.66 E-value=12 Score=32.95 Aligned_cols=70 Identities=23% Similarity=0.192 Sum_probs=45.9
Q ss_pred EEEEeCCHHHHHHHHHh--CCcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCC
Q psy16116 490 AFVLFEKEEEADKALSK--HKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYL 567 (612)
Q Consensus 490 AFV~F~s~edA~kAL~~--~~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~ 567 (612)
|.|+|.+++-|++.+++ +.-.+++..++|..+.-... ...+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~--~~~k----------------------------------- 43 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLG--HLQK----------------------------------- 43 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecC--CceE-----------------------------------
Confidence 68999999999999986 44567777776654321100 0000
Q ss_pred CcccccCCCcccEEEEcCCCccCCHHHHHHh
Q psy16116 568 PQHIITSGTRKDCIRLRGLPYEALCILMDIF 598 (612)
Q Consensus 568 ~~~~~~~~~~~~~VfVrNLPf~vTeeDLkef 598 (612)
........+++|-|.|||....+|+|++.
T Consensus 44 --~qv~~~vs~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 44 --FQVFSGVSKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred --EEEEEcccCCEEEEeCCCCCCChhhheee
Confidence 00111235578999999998999998864
No 200
>KOG2253|consensus
Probab=61.49 E-value=2.8 Score=48.48 Aligned_cols=115 Identities=10% Similarity=0.071 Sum_probs=61.0
Q ss_pred eEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhhccCC---CCcchhhhccCCcccEEEEeCCCCCCCHHHHH
Q psy16116 381 EAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFINVAGG---NNNEAQAFLTRGAQVIIRMRGLPYECTAKQVI 456 (612)
Q Consensus 381 ~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~~~g~---~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLr 456 (612)
|||-+|........|+. .+...++|..+.+..- .......... .......|......+..++.++|-+..+...+
T Consensus 75 fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d-~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~ 153 (668)
T KOG2253|consen 75 FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD-EQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHK 153 (668)
T ss_pred hcccchhhHHHHHHHHHHhcccCCCcchhhccch-hhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHH
Confidence 99999999999999997 4455676665433221 1111110000 01111223222234567888888888888777
Q ss_pred HHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHH
Q psy16116 457 DFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL 504 (612)
Q Consensus 457 efF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL 504 (612)
+.|.-.+ ......-..+.++..+-++|-+|.+.....+++
T Consensus 154 ~~~~is~--------s~~s~~~~~e~d~h~~e~~~~~~~s~~~~~~~~ 193 (668)
T KOG2253|consen 154 KSLQISS--------SAASRRQIAEADDHCLELEKTETESNSALSKEA 193 (668)
T ss_pred HHHhccc--------hhhhhhhhHHHHHHHHHHHHhhcccccccCccc
Confidence 7776443 111122222233444455566666555555554
No 201
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=60.88 E-value=9.6 Score=35.10 Aligned_cols=50 Identities=22% Similarity=0.156 Sum_probs=33.0
Q ss_pred CHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCC-HHHHHHHHHhCCcc
Q psy16116 451 TAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEK-EEEADKALSKHKES 510 (612)
Q Consensus 451 te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s-~edA~kAL~~~~~~ 510 (612)
+.++|++.|+.|.. ..|+.+.+..| .+|++.|.|.+ -.-...|+++++++
T Consensus 30 ~~~~l~~~l~~f~p---------~kv~~l~~~~g-h~g~aiv~F~~~w~Gf~~A~~l~~~F 80 (116)
T PF03468_consen 30 SNEELLDKLAEFNP---------LKVKPLYGKQG-HTGFAIVEFNKDWSGFKNAMRLEKHF 80 (116)
T ss_dssp -SHHHHHHHHH------------SEEEEEEETTE-EEEEEEEE--SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCC---------ceeEECcCCCC-CcEEEEEEECCChHHHHHHHHHHHHH
Confidence 45889999999872 34777777664 78999999984 55677888765543
No 202
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=59.46 E-value=33 Score=28.64 Aligned_cols=55 Identities=9% Similarity=0.077 Sum_probs=39.4
Q ss_pred cceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCce
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKR 406 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR 406 (612)
+|-+.+++.++++.-|+.|.- .. |+.++ +|| ||.|.+.+||+++.. .++..+.+-
T Consensus 6 ~vp~~~~~v~d~K~~Lr~y~~----~~--I~~d~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y 61 (66)
T PF11767_consen 6 FVPVHGVTVEDFKKRLRKYRW----DR--IRDDR----TGF-YIVFNDSKEAERCFRAEDGTLFFTY 61 (66)
T ss_pred cCCCCCccHHHHHHHHhcCCc----ce--EEecC----CEE-EEEECChHHHHHHHHhcCCCEEEEE
Confidence 445667778899999998763 23 44443 467 999999999999997 456555443
No 203
>KOG2416|consensus
Probab=58.99 E-value=19 Score=41.60 Aligned_cols=85 Identities=15% Similarity=0.115 Sum_probs=64.4
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcc---c
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKES---I 511 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~---i 511 (612)
..+++|+|.||=--.|.-.|++++..-|- .|. .. -+| +.|--|||.|.+.++|..-.. +|+-. -
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg---~Ve----e~--WmD---kIKShCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGG---NVE----EF--WMD---KIKSHCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccC---chH----HH--HHH---HhhcceeEecccHHHHHHHHHHHhccccCCC
Confidence 35789999999999999999999984440 231 11 223 566679999999999988774 67654 4
Q ss_pred CCEEEEEEecchHHHHHHhhh
Q psy16116 512 GIRYIELFRSTTAEVQQVLNK 532 (612)
Q Consensus 512 ggR~IeV~~as~~e~~~~~~~ 532 (612)
+.+.+.+...+..++.++...
T Consensus 510 NPK~L~adf~~~deld~hr~~ 530 (718)
T KOG2416|consen 510 NPKHLIADFVRADELDKHRNG 530 (718)
T ss_pred CCceeEeeecchhHHHHHhcc
Confidence 678899999999998876543
No 204
>KOG1923|consensus
Probab=58.40 E-value=22 Score=42.28 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=9.8
Q ss_pred cCCCHHHHHhhHhhccc
Q psy16116 345 QNIWLSLLLNTIPGYEQ 361 (612)
Q Consensus 345 ~nLp~~~~e~~fkeff~ 361 (612)
..++++..++-|+.|+.
T Consensus 399 ~~lD~~~~ee~Fk~~~s 415 (830)
T KOG1923|consen 399 EALDFSRFEEQFKILKS 415 (830)
T ss_pred HhhhHHHHHHHHHhhhc
Confidence 44555666666666554
No 205
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=57.05 E-value=30 Score=34.46 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=40.0
Q ss_pred CHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hC--CcccCCEEEEEEecc
Q psy16116 451 TAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KH--KESIGIRYIELFRST 522 (612)
Q Consensus 451 te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~--~~~iggR~IeV~~as 522 (612)
..+.|+++|..++ .+ ....++ ++=+-..|.|.+.++|.+|.. ++ +..+.|..++|+.+.
T Consensus 8 ~~~~l~~l~~~~~----~~----~~~~~L-----~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYD----PP----VQFSPL-----KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-----SS-----EEEEE-----TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcC----Cc----eEEEEc-----CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 4588999999998 22 223333 344568999999999999997 47 888999999998773
No 206
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=56.80 E-value=38 Score=28.27 Aligned_cols=61 Identities=15% Similarity=0.111 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHhcC-CCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEec
Q psy16116 449 ECTAKQVIDFFEAG-TENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRS 521 (612)
Q Consensus 449 s~te~dLrefF~~~-Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~a 521 (612)
.++..+|..++.+. |+..- .+..|+|.. -|+||+-... .++++++ +++..+.||.+.|..+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~----~IG~I~I~~-------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGR----DIGRIDIFD-------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GG----GEEEEEE-S-------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHH----hEEEEEEee-------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 56788999999766 54332 245677642 3899998776 6777775 6999999999998764
No 207
>KOG2591|consensus
Probab=56.79 E-value=6.8 Score=44.69 Aligned_cols=67 Identities=9% Similarity=0.046 Sum_probs=41.7
Q ss_pred CCCcccceecCCCHHHHHhhHhhcccc---cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHh---CCCccCceEE
Q psy16116 336 NPVALCPLVQNIWLSLLLNTIPGYEQV---LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKR---HKHHIDKRYI 408 (612)
Q Consensus 336 ~~~~l~vlV~nLp~~~~e~~fkeff~~---~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~---ng~~IggR~I 408 (612)
+...+.|+++.|+...=.+.++.+|.. -.+.++.+- .+.+. ||+|++.+||+.|.+. .-+.|-|+.|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa-----~N~nW-yITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFA-----HNDNW-YITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee-----ecCce-EEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 334445677888777767777766653 113344443 23333 9999999999999873 2245666665
No 208
>KOG1923|consensus
Probab=54.55 E-value=50 Score=39.38 Aligned_cols=12 Identities=42% Similarity=0.623 Sum_probs=5.9
Q ss_pred HHHHhhhhhcCc
Q psy16116 65 ILEFLGEFASNI 76 (612)
Q Consensus 65 il~f~~~~~~~~ 76 (612)
||+|-++-+..|
T Consensus 164 ~le~v~~~~~~i 175 (830)
T KOG1923|consen 164 VLEFVETPADQI 175 (830)
T ss_pred HHHhhcchhhhh
Confidence 455555444443
No 209
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=53.26 E-value=89 Score=28.60 Aligned_cols=68 Identities=12% Similarity=0.128 Sum_probs=48.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGI 513 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~igg 513 (612)
...+.+-..|+.++-++|..|.+.+- +.++.++|++|... ++=-+.+.|++.++|+.=.+ .||+.++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~-------~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFR-------EDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhccc-------ccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34566677777777788876665543 24567888876542 55678899999999998885 58877664
No 210
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=52.26 E-value=62 Score=28.58 Aligned_cols=62 Identities=10% Similarity=0.114 Sum_probs=44.2
Q ss_pred CCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEe
Q psy16116 346 NIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVT 411 (612)
Q Consensus 346 nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~ 411 (612)
+++++.+++-+++.|......++.+....+ .| -+|.+.+.+|...|+..+...-+.+.+++.
T Consensus 24 d~~~~~L~~kI~~~f~l~~~~~~~l~Y~De---dg-d~V~l~~D~DL~~a~~~~~~~~~~~~lrl~ 85 (91)
T cd06398 24 DLNMDGLREKVEELFSLSPDADLSLTYTDE---DG-DVVTLVDDNDLTDAIQYFCSGSRLNPLRID 85 (91)
T ss_pred CCCHHHHHHHHHHHhCCCCCCcEEEEEECC---CC-CEEEEccHHHHHHHHHHHhccCCCceEEEE
Confidence 688999999999999753335666644322 12 299999999999999976545555665553
No 211
>KOG2391|consensus
Probab=51.78 E-value=58 Score=35.43 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
Q psy16116 216 QIAAQQMAALNKPHNMALNGHTPTLIPAPSP-NALMPPPLNSKSTT 260 (612)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~p~p~~~~~~~ 260 (612)
...++.+|+++-.++...++.+++ ++|-| +-|.+||+.+.++.
T Consensus 126 ~Liq~l~a~f~~~pP~ys~~~~~~--p~p~p~~~~~~~p~~p~~~~ 169 (365)
T KOG2391|consen 126 GLIQELIAAFSEDPPVYSRSLPSP--PPPYPQTEYNTPPLKPKGSA 169 (365)
T ss_pred HHHHHHHHHhcCCCccccCCCCCC--CCCCCcccCCCCCCCCCCcC
Confidence 345678888888777666554432 12222 33445555444444
No 212
>KOG3837|consensus
Probab=50.98 E-value=2.7e+02 Score=31.44 Aligned_cols=9 Identities=11% Similarity=-0.204 Sum_probs=5.5
Q ss_pred ccccceeec
Q psy16116 133 GEDMNLVLN 141 (612)
Q Consensus 133 ~~~m~~~~~ 141 (612)
|..||+.-+
T Consensus 39 g~~vd~~d~ 47 (523)
T KOG3837|consen 39 GFIVDGIDL 47 (523)
T ss_pred ccccccccC
Confidence 667776543
No 213
>PHA03378 EBNA-3B; Provisional
Probab=47.35 E-value=2e+02 Score=34.23 Aligned_cols=7 Identities=14% Similarity=0.003 Sum_probs=3.6
Q ss_pred ceeecCC
Q psy16116 137 NLVLNGV 143 (612)
Q Consensus 137 ~~~~~~~ 143 (612)
||+--|-
T Consensus 665 ~w~~~~h 671 (991)
T PHA03378 665 TWTQIGH 671 (991)
T ss_pred cccccCC
Confidence 5664443
No 214
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=44.79 E-value=1.8e+02 Score=30.46 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16116 192 VHLTQALAQAQYAKSQQDNLMLMNQIAA 219 (612)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (612)
+.||-.|+.+.+.++++.-..|-.++.+
T Consensus 46 laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 46 LAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455666666666555555555433
No 215
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=41.91 E-value=33 Score=30.18 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=22.5
Q ss_pred cccEEEEcCCCccCCHHHHHHhhccCCcEeEe
Q psy16116 577 RKDCIRLRGLPYEALCILMDIFFVGQQDSFVH 608 (612)
Q Consensus 577 ~~~~VfVrNLPf~vTeeDLkefFs~~gdI~~~ 608 (612)
+.++.||. +|-.=...||.++|+.||.|.+-
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~Vs 38 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVS 38 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEEEE
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEEEE
Confidence 45667777 99999999999999999988764
No 216
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=40.00 E-value=75 Score=30.78 Aligned_cols=68 Identities=22% Similarity=0.172 Sum_probs=45.4
Q ss_pred cccEEEEeCCCCCCC----HHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccC
Q psy16116 437 AQVIIRMRGLPYECT----AKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIG 512 (612)
Q Consensus 437 ~~~~VfV~nLP~s~t----e~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~ig 512 (612)
.-.+|.||=|..+.. -..|....+.|| .+++|.+. || --|.|.|++-..|-+|+.--....-
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fG--------pI~SVT~c----Gr--qsavVvF~d~~SAC~Av~Af~s~~p 150 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFG--------PIQSVTLC----GR--QSAVVVFKDITSACKAVSAFQSRAP 150 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcC--------Ccceeeec----CC--ceEEEEehhhHHHHHHHHhhcCCCC
Confidence 345677776665543 345556678888 45677775 43 4599999999999999975433444
Q ss_pred CEEEEE
Q psy16116 513 IRYIEL 518 (612)
Q Consensus 513 gR~IeV 518 (612)
|+.+..
T Consensus 151 gtm~qC 156 (166)
T PF15023_consen 151 GTMFQC 156 (166)
T ss_pred CceEEe
Confidence 554443
No 217
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=39.18 E-value=1.5e+02 Score=34.24 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=12.6
Q ss_pred hcHHHHHHHhhhhhcC
Q psy16116 60 VLVEHILEFLGEFASN 75 (612)
Q Consensus 60 ~~~~~il~f~~~~~~~ 75 (612)
..+||+|+|.|+-...
T Consensus 136 ~el~~~L~~~~~i~~~ 151 (582)
T PF03276_consen 136 DELEDVLNFQGQILEQ 151 (582)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3789999999986543
No 218
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=37.93 E-value=73 Score=27.83 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH
Q psy16116 446 LPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS 505 (612)
Q Consensus 446 LP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~ 505 (612)
.+..++..+|++.++.+. .| .+.+|+.+.-..|.. -|||+|...++|.....
T Consensus 28 V~~~anK~eIK~AvE~lf----~V--kV~~VnT~~~~~~~K--KA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 28 VDRRATKPDIKRAVEELF----DV--KVEKVNTLITPKGEK--KAYVKLAEEYDAEEIAS 79 (84)
T ss_pred ECCCCCHHHHHHHHHHHh----CC--ceEEEEeEEcCCCcE--EEEEEeCCCCcHHHHHH
Confidence 457899999999999853 23 566787776654433 49999998888877653
No 219
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=37.38 E-value=1.3e+02 Score=27.48 Aligned_cols=58 Identities=9% Similarity=-0.014 Sum_probs=37.0
Q ss_pred CCCHHHHHhhHhhcccc--cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccC
Q psy16116 346 NIWLSLLLNTIPGYEQV--LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHID 404 (612)
Q Consensus 346 nLp~~~~e~~fkeff~~--~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Ig 404 (612)
..++-..-++|..|+.. ..+..++|++|... ++=.+.++|.+.++|+.=.+ .||+.+.
T Consensus 20 vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 20 VPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 33333344444444433 23667888876442 45578999999999999886 6776654
No 220
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=37.26 E-value=79 Score=31.52 Aligned_cols=59 Identities=15% Similarity=0.093 Sum_probs=37.0
Q ss_pred HHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hC--CCccCceEEEEeccCc
Q psy16116 349 LSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RH--KHHIDKRYIEVTKANG 415 (612)
Q Consensus 349 ~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~n--g~~IggR~IeV~~s~~ 415 (612)
.+.++++|..+.. ......+ ++-+-..|.|.+.++|.+|.. ++ +..+.|..++++.+..
T Consensus 9 ~~~l~~l~~~~~~---~~~~~~L-----~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 9 LAELEELFSTYDP---PVQFSPL-----KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHHHHHHTT-S---S-EEEEE-----TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHHHHHHhcCC---ceEEEEc-----CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 3566666666543 3344443 345678999999999999997 56 7788998899987743
No 221
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=35.46 E-value=81 Score=27.09 Aligned_cols=55 Identities=20% Similarity=0.141 Sum_probs=38.0
Q ss_pred EEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHH
Q psy16116 442 RMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL 504 (612)
Q Consensus 442 fV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL 504 (612)
++-..+..++..+|++.++.+- +| .+.+|+.+.-+.+.. -|||++...++|...-
T Consensus 17 y~F~V~~~anK~eIK~avE~lf----~V--kV~~Vnt~~~~~~~K--KA~VtL~~g~~a~~va 71 (77)
T TIGR03636 17 LTFIVDRKATKGDIKRAVEKLF----DV--KVEKVNTLITPRGEK--KAYVKLAEEYAAEEIA 71 (77)
T ss_pred EEEEECCCCCHHHHHHHHHHHh----CC--ceEEEEeEEcCCCce--EEEEEECCCCcHHHHH
Confidence 3444567999999999999853 23 456677765554433 4999998877776543
No 222
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=34.43 E-value=1.2e+02 Score=29.50 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=39.2
Q ss_pred HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEe
Q psy16116 350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVT 411 (612)
Q Consensus 350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~ 411 (612)
+|++.-+..+-..|.+.+|.+ -||. -|.|.|++...|-+|+........|+.+...
T Consensus 102 edl~sV~~~Ls~fGpI~SVT~----cGrq--savVvF~d~~SAC~Av~Af~s~~pgtm~qCs 157 (166)
T PF15023_consen 102 EDLKSVIQRLSVFGPIQSVTL----CGRQ--SAVVVFKDITSACKAVSAFQSRAPGTMFQCS 157 (166)
T ss_pred HHHHHHHHHHHhcCCcceeee----cCCc--eEEEEehhhHHHHHHHHhhcCCCCCceEEee
Confidence 455555554444456888887 3544 7899999999999999866666666666554
No 223
>KOG2135|consensus
Probab=34.31 E-value=23 Score=39.96 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=44.8
Q ss_pred HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116 350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~ 415 (612)
.++...|..|++ +.+|.+-+. .--|.|+|.+..+|-+|-..++..|++|.|+|++.+.
T Consensus 388 a~ln~hfA~fG~---i~n~qv~~~-----~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 388 ADLNPHFAQFGE---IENIQVDYS-----SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhhhhhcCc---cccccccCc-----hhhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 445666666664 667776332 3468999999999999999999999999999987764
No 224
>KOG0804|consensus
Probab=33.93 E-value=1.1e+02 Score=34.47 Aligned_cols=68 Identities=10% Similarity=0.145 Sum_probs=54.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGI 513 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~igg 513 (612)
+..|+|-.+|-..+-.||..|...+- . .+..|+|++|..+ .+=...|.|++.++|..--+ .||..++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~----~---~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFI----K---QISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHh----h---hhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 56799999999999999999998654 1 4567999986543 34468999999999999885 68887764
No 225
>KOG2068|consensus
Probab=33.18 E-value=21 Score=38.51 Aligned_cols=63 Identities=10% Similarity=0.094 Sum_probs=41.3
Q ss_pred HHhhHh--hcccc-cCeeeEEEeeCC--CCCCcc--eEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116 352 LLNTIP--GYEQV-LGLGGVALCLSA--FGRRNG--EAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 352 ~e~~fk--eff~~-~~v~~V~ii~d~--~GrsrG--~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~ 414 (612)
-+.+|+ ++|.. +.+..|.+-.+. ....-| -+||+|+..|||..||. -++..++||.++....+
T Consensus 91 de~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gt 161 (327)
T KOG2068|consen 91 DESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLGT 161 (327)
T ss_pred chhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhCC
Confidence 344555 34433 457777776654 222222 27999999999999997 68888888876655443
No 226
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=31.99 E-value=33 Score=28.36 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=14.6
Q ss_pred HHHHHHhhccCCcEeEe
Q psy16116 592 CILMDIFFVGQQDSFVH 608 (612)
Q Consensus 592 eeDLkefFs~~gdI~~~ 608 (612)
..+||+||+.+|+|-+.
T Consensus 8 ~~~iR~~fs~lG~I~vL 24 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVL 24 (62)
T ss_pred HHHHHHHHHhcCcEEEE
Confidence 36899999999999765
No 227
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=30.85 E-value=35 Score=31.47 Aligned_cols=51 Identities=24% Similarity=0.239 Sum_probs=33.0
Q ss_pred CCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCH-HHHHHHHHhCCCc
Q psy16116 347 IWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQ-EHRDMALKRHKHH 402 (612)
Q Consensus 347 Lp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~-EdA~kAL~~ng~~ 402 (612)
++-+.+++.|++|. ...|+.+.++.| ++|++.|+|.+. .....|+.+++++
T Consensus 29 ~~~~~l~~~l~~f~----p~kv~~l~~~~g-h~g~aiv~F~~~w~Gf~~A~~l~~~F 80 (116)
T PF03468_consen 29 MSNEELLDKLAEFN----PLKVKPLYGKQG-HTGFAIVEFNKDWSGFKNAMRLEKHF 80 (116)
T ss_dssp --SHHHHHHHHH-------SEEEEEEETTE-EEEEEEEE--SSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcC----CceeEECcCCCC-CcEEEEEEECCChHHHHHHHHHHHHH
Confidence 34477888888854 345777777765 789999999765 4578888776554
No 228
>PF02464 CinA: Competence-damaged protein; InterPro: IPR008136 CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation []. This is a C-terminal region of putative competence-damaged proteins from the cin operon.; PDB: 2A9S_A.
Probab=30.09 E-value=78 Score=30.39 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=34.0
Q ss_pred EEEeecCcCCCCCCCCcceeeeeeeeeeecccccEEEEeeecCccccchhhcHHHHHHHhhhh
Q psy16116 10 FFVATAGLQGNLLGSDEQEIILLIYVIIDSYVNKVLITSQYKEPIQGFKKVLVEHILEFLGEF 72 (612)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~t~~~~~~~~~~~~~~~~~il~f~~~~ 72 (612)
+-||+.|.-|+. |.+++.-+-.+|+-|.-...-......+..+.+..|...+...|++|.++
T Consensus 92 i~lA~TG~aGP~-~~~~~~~~G~v~iai~~~~~~~~~~~~~~g~R~~ir~~~~~~al~~L~~~ 153 (154)
T PF02464_consen 92 IGLAITGVAGPG-GGTEGKPVGTVYIAIAYRGGVWVREVQFPGDREEIRQRAVNQALDLLRRY 153 (154)
T ss_dssp EEEEEEE--SSS-S--SSS-TTEEEEEEEETTSEEEEEEE--S-HHHHHHHHHHHHHHHHH--
T ss_pred EEEEEEeccCCC-CcccCCcCceEEEEEEeCCceEEEEEECCCCHHHHHHHHHHHHHHHHHhh
Confidence 457899999998 44566667778888874443222233333333444677888888888653
No 229
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=28.48 E-value=2.6e+02 Score=22.24 Aligned_cols=49 Identities=12% Similarity=0.143 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcc
Q psy16116 452 AKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKES 510 (612)
Q Consensus 452 e~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~ 510 (612)
=.+|-+.|.+.|+ + ++++..... +. ++.--+.+.+.+.+.++|+.+|..
T Consensus 15 La~v~~~l~~~~i---n----I~~i~~~~~--~~-~~~~rl~~~~~~~~~~~L~~~G~~ 63 (66)
T cd04908 15 LAAVTEILSEAGI---N----IRALSIADT--SE-FGILRLIVSDPDKAKEALKEAGFA 63 (66)
T ss_pred HHHHHHHHHHCCC---C----EEEEEEEec--CC-CCEEEEEECCHHHHHHHHHHCCCE
Confidence 4678899999885 3 345554332 22 477777788888888888776643
No 230
>KOG4483|consensus
Probab=27.82 E-value=1.2e+02 Score=33.89 Aligned_cols=67 Identities=15% Similarity=0.320 Sum_probs=51.4
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI 516 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I 516 (612)
-.++|-|-|+|....-+||...|+.|+-+.|. |.++.|. -||-.|.+..-|..||-+. .-|+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfd-------IkWvDdt------halaVFss~~~AaeaLt~k-----h~~l 451 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFD-------IKWVDDT------HALAVFSSVNRAAEALTLK-----HDWL 451 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCce-------eEEeecc------eeEEeecchHHHHHHhhcc-----CceE
Confidence 35889999999999999999999999854443 4565442 5899999999999999762 2355
Q ss_pred EEEec
Q psy16116 517 ELFRS 521 (612)
Q Consensus 517 eV~~a 521 (612)
+++.-
T Consensus 452 KiRpL 456 (528)
T KOG4483|consen 452 KIRPL 456 (528)
T ss_pred Eeeeh
Confidence 55554
No 231
>KOG1830|consensus
Probab=27.52 E-value=3.8e+02 Score=30.31 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q psy16116 251 PPPLNSKSTTIPTNLPALPAV 271 (612)
Q Consensus 251 p~p~~~~~~~~~~~~~~~p~~ 271 (612)
||||+...++.+-++|++..+
T Consensus 335 ppPpp~~~~~sp~~pppp~pp 355 (518)
T KOG1830|consen 335 PPPPPPLLMNSPIVPPPPSPP 355 (518)
T ss_pred CCCCCcccccCCCCCCCCCCC
Confidence 555566666666665544433
No 232
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=27.42 E-value=92 Score=32.84 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=15.9
Q ss_pred EEEEeCCHHHHHHHHHh
Q psy16116 382 AIVRFIDQEHRDMALKR 398 (612)
Q Consensus 382 AFVeF~S~EdA~kAL~~ 398 (612)
|||+|++.++|+.|++.
T Consensus 1 aFVtF~~~~~a~~~~q~ 17 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQL 17 (325)
T ss_pred CEEEECCHHHHHHHHHH
Confidence 79999999999999984
No 233
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=26.97 E-value=2.1e+02 Score=23.72 Aligned_cols=59 Identities=10% Similarity=0.130 Sum_probs=31.5
Q ss_pred CCCHHHHHhhHhhccc-c-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEec
Q psy16116 346 NIWLSLLLNTIPGYEQ-V-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTK 412 (612)
Q Consensus 346 nLp~~~~e~~fkeff~-~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~ 412 (612)
++...++-.+|.+... . ..+..|.+.. -|.||+-... .|+.+++ +++..++|+.|.|..
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~-------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD-------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S-------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee-------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 5566677777765432 2 3366777732 3889998766 6777786 688899999998864
No 234
>KOG2253|consensus
Probab=26.47 E-value=43 Score=39.20 Aligned_cols=68 Identities=10% Similarity=-0.002 Sum_probs=52.2
Q ss_pred CCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116 435 RGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGI 513 (612)
Q Consensus 435 ~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~igg 513 (612)
.+...+|||+|+.+.+..+-++.....|| .| .....+. |||..|..+....+|+. ++...++|
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g----~v------~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~ 100 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSG----FV------PSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDD 100 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCC----cc------hhhhhhh------hcccchhhHHHHHHHHHHhcccCCCc
Confidence 34567899999999999999999999999 22 1111111 99999999999999997 46677777
Q ss_pred EEEEE
Q psy16116 514 RYIEL 518 (612)
Q Consensus 514 R~IeV 518 (612)
..+.+
T Consensus 101 ~kl~~ 105 (668)
T KOG2253|consen 101 QKLIE 105 (668)
T ss_pred chhhc
Confidence 66444
No 235
>KOG1925|consensus
Probab=24.51 E-value=7.8e+02 Score=28.62 Aligned_cols=19 Identities=16% Similarity=0.008 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCCcCccccc
Q psy16116 275 GGYFPQFQLPINMNTAHLL 293 (612)
Q Consensus 275 ~~~~p~~~~~~~~~~~~~~ 293 (612)
-|++|+++++.++-..+++
T Consensus 255 ~G~~PPPPP~~~~L~~~v~ 273 (817)
T KOG1925|consen 255 KGPFPPPPPLAAPLPHSVP 273 (817)
T ss_pred CCCCCCCCCCcccCcCCCC
Confidence 4666665555554444444
No 236
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=24.33 E-value=15 Score=34.14 Aligned_cols=80 Identities=18% Similarity=0.144 Sum_probs=54.1
Q ss_pred eeEEEEEeCCHHHHHHHHHhCCcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCC
Q psy16116 487 TGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPY 566 (612)
Q Consensus 487 kG~AFV~F~s~edA~kAL~~~~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~ 566 (612)
.|+..+.|.+++|++++++...-.+++..+.+..-++..- + .+ .
T Consensus 55 ~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~----------~------~~----------------~---- 98 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFN----------P------SE----------------V---- 98 (153)
T ss_pred CCeEEEEEEeccceeEEEecccccccccchhhhhhccccc----------c------cc----------------c----
Confidence 4799999999999999998777778887776654331100 0 00 0
Q ss_pred CCcccccCCCcccEEEEcCCCccC-CHHHHHHhhccCCcEeEe
Q psy16116 567 LPQHIITSGTRKDCIRLRGLPYEA-LCILMDIFFVGQQDSFVH 608 (612)
Q Consensus 567 ~~~~~~~~~~~~~~VfVrNLPf~v-TeeDLkefFs~~gdI~~~ 608 (612)
.......=|.|.|||... +++-++++-+.+|.+.-+
T Consensus 99 ------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~v 135 (153)
T PF14111_consen 99 ------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEV 135 (153)
T ss_pred ------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEE
Confidence 000123458999999997 778888888888765443
No 237
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=24.30 E-value=4e+02 Score=22.61 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=47.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC--CCCceeEEEEEeCCHHHHHHHHHhCCcccC
Q psy16116 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP--DGKATGDAFVLFEKEEEADKALSKHKESIG 512 (612)
Q Consensus 440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~--~GrskG~AFV~F~s~edA~kAL~~~~~~ig 512 (612)
.+-.++||..+|.++|.+.-.... .+.+...+|+++..- ..+.|=||+.+=.|+|.++++-++.|--.+
T Consensus 2 ymver~~p~~it~e~l~~~~~~~~----~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~aG~p~d 72 (77)
T PF14026_consen 2 YMVERDFPGGITAEDLAAAHAKSC----AVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRAGLPAD 72 (77)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhH----HHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHcCCCcc
Confidence 367789999999999999987543 343322256665432 123467888888899999998877654433
No 238
>KOG0905|consensus
Probab=23.98 E-value=1.1e+02 Score=38.47 Aligned_cols=53 Identities=25% Similarity=0.328 Sum_probs=26.0
Q ss_pred HHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-C--CCCCCCCCCCCCCCCCCCCCCCCC
Q psy16116 223 AALNKPHNMALNGHTPTLIPAPSPNALMPPPLNSK-S--TTIPTNLPALPAVPTSGGYFPQFQ 282 (612)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~p~~~~-~--~~~~~~~~~~p~~p~~~~~~p~~~ 282 (612)
|.+.+|.....++ .+.++.+..+|+-|| + ....++|||+|.--+.+|..|.++
T Consensus 119 ~s~sgp~~~~~~~-------~~~~~~~sk~p~~~~v~~~~~~~~~P~p~Ppy~s~pg~pP~~s 174 (1639)
T KOG0905|consen 119 ASLSGPSLYPAPG-------SPGGPEYSKQPAAQSVSLLPDMYFVPPPLPPYTSVPGVPPQHS 174 (1639)
T ss_pred CCCCCCcCCCCCC-------CCCCcccCCCccccccccCcccCcCCCCCCccccCCCCCCCCC
Confidence 5555665544332 334455555666666 2 233444555553334555555544
No 239
>KOG3671|consensus
Probab=23.37 E-value=5.3e+02 Score=29.81 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=9.8
Q ss_pred ccchhhcHHHHHHHhh
Q psy16116 55 QGFKKVLVEHILEFLG 70 (612)
Q Consensus 55 ~~~~~~~~~~il~f~~ 70 (612)
-||-=+++++--+|+.
T Consensus 118 aGLnF~~E~EA~~F~k 133 (569)
T KOG3671|consen 118 AGLNFASEEEAQKFRK 133 (569)
T ss_pred eeecccCHHHHHHHHH
Confidence 3455566666666665
No 240
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=22.34 E-value=2.6e+02 Score=24.49 Aligned_cols=31 Identities=26% Similarity=0.134 Sum_probs=26.3
Q ss_pred EEEEEeCCHHHHHHHHHhCCcccCCEEEEEE
Q psy16116 489 DAFVLFEKEEEADKALSKHKESIGIRYIELF 519 (612)
Q Consensus 489 ~AFV~F~s~edA~kAL~~~~~~iggR~IeV~ 519 (612)
-..|.|.+.++.+..|+.++..|..-+||..
T Consensus 42 ~~~vvfGd~~~i~~~Le~~~~~I~~y~iE~d 72 (83)
T PF08503_consen 42 NFGVVFGDWDEIKPFLEANKDKIEDYRIEND 72 (83)
T ss_dssp SEEEEEEEHHHHHHHHHHTTTTEEEEEEEE-
T ss_pred CcEEEEecHHHHHHHHHhchhhCcEEEEEec
Confidence 3459999999999999999999988888764
No 241
>KOG0307|consensus
Probab=22.29 E-value=1.3e+03 Score=29.25 Aligned_cols=7 Identities=0% Similarity=-0.007 Sum_probs=3.3
Q ss_pred HHhhHhh
Q psy16116 352 LLNTIPG 358 (612)
Q Consensus 352 ~e~~fke 358 (612)
++.++++
T Consensus 951 i~~~~e~ 957 (1049)
T KOG0307|consen 951 IETFLEE 957 (1049)
T ss_pred HHHHHHH
Confidence 4444444
No 242
>PHA01732 proline-rich protein
Probab=22.16 E-value=1.2e+02 Score=26.84 Aligned_cols=31 Identities=39% Similarity=0.664 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy16116 232 ALNGHTPTLIPAPSPNALMPPPLNSKSTTIPTNLPALPAVPTS 274 (612)
Q Consensus 232 ~~~~~~~~~~~~~~p~~~~p~p~~~~~~~~~~~~~~~p~~p~~ 274 (612)
++.+..| +.|+|....|+|++ +|++|.+++.
T Consensus 6 AP~~p~p---pPpPpP~P~PpPpP---------ppppP~p~p~ 36 (94)
T PHA01732 6 APKPPEP---PAPLPPAPVPPPPP---------APPAPVPEPT 36 (94)
T ss_pred CCCCCCC---CCCCCCCCCCCCCC---------CCCCCCCCcc
No 243
>KOG3424|consensus
Probab=22.10 E-value=1.4e+02 Score=27.92 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=29.4
Q ss_pred cCCCHHHHHhhHhhcccccCeeeEEEee---CC--CCCCcceEEEEeCCHHHHH
Q psy16116 345 QNIWLSLLLNTIPGYEQVLGLGGVALCL---SA--FGRRNGEAIVRFIDQEHRD 393 (612)
Q Consensus 345 ~nLp~~~~e~~fkeff~~~~v~~V~ii~---d~--~GrsrG~AFVeF~S~EdA~ 393 (612)
.++|.+++++-|.+.... ..++.++. +. .|++.|||.| |.|.|.|.
T Consensus 33 a~vsK~EirEKla~mYkt--~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKT--TPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCCHHHHHHHHHHHhcC--CcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 367889999999987763 22333332 22 3688999987 45555443
No 244
>PRK10263 DNA translocase FtsK; Provisional
Probab=21.69 E-value=5.7e+02 Score=33.07 Aligned_cols=17 Identities=0% Similarity=0.008 Sum_probs=9.8
Q ss_pred HHhhHhhcccccCeeeE
Q psy16116 352 LLNTIPGYEQVLGLGGV 368 (612)
Q Consensus 352 ~e~~fkeff~~~~v~~V 368 (612)
+++-|++|+....+.+|
T Consensus 894 l~~~L~~F~i~~~v~~v 910 (1355)
T PRK10263 894 VEARLADFRIKADVVNY 910 (1355)
T ss_pred HHHHHHHCCcceEEEEE
Confidence 56677777764433333
No 245
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=21.09 E-value=68 Score=33.87 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=21.5
Q ss_pred EEEEeCCHHHHHHHHHhCCcccCCEEEEEEec
Q psy16116 490 AFVLFEKEEEADKALSKHKESIGIRYIELFRS 521 (612)
Q Consensus 490 AFV~F~s~edA~kAL~~~~~~iggR~IeV~~a 521 (612)
|||+|++..+|..|++.-...-. +.+.|..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~-~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP-NSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC-CCceEeeC
Confidence 79999999999999984222222 33466666
No 246
>KOG4410|consensus
Probab=21.02 E-value=1.1e+02 Score=32.76 Aligned_cols=48 Identities=17% Similarity=0.371 Sum_probs=35.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCH
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKE 497 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~ 497 (612)
..-|+|.|||-++.-.||+.-+++.+ |. .-+|.. .| ..|-||..|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~---~~----pm~isw----kg-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRE---CT----PMSISW----KG-HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcC---CC----ceeEee----ec-CCcceeEecCCc
Confidence 34599999999999999999999887 21 112222 33 567899999864
No 247
>KOG0917|consensus
Probab=20.27 E-value=5.2e+02 Score=27.66 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=5.4
Q ss_pred CccccCCCCCCCC
Q psy16116 299 PFFFNMPRMPVTP 311 (612)
Q Consensus 299 p~~~~~P~~p~~~ 311 (612)
++....|+++...
T Consensus 266 ~f~~~~P~~qP~~ 278 (338)
T KOG0917|consen 266 TFFTIQPTPQPIP 278 (338)
T ss_pred CCCCCCCCCCCCC
Confidence 3444444444333
Done!