Query psy16116
Match_columns 612
No_of_seqs 394 out of 2064
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 21:17:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 1.2E-30 4.2E-35 265.6 18.1 201 340-612 42-245 (292)
2 3smz_A Protein raver-1, ribonu 100.0 7.5E-30 2.6E-34 258.8 19.3 192 340-611 23-218 (284)
3 1l3k_A Heterogeneous nuclear r 100.0 9.5E-28 3.2E-32 228.8 17.8 168 341-526 15-185 (196)
4 3md3_A Nuclear and cytoplasmic 99.9 4.1E-27 1.4E-31 217.5 17.3 159 342-522 3-165 (166)
5 4f02_A Polyadenylate-binding p 99.9 8.8E-27 3E-31 228.4 17.8 161 343-526 19-183 (213)
6 2cjk_A Nuclear polyadenylated 99.9 1.8E-27 6.1E-32 221.3 11.3 158 341-523 5-165 (167)
7 3smz_A Protein raver-1, ribonu 99.9 2.4E-25 8.1E-30 225.7 25.3 152 350-525 110-265 (284)
8 2qfj_A FBP-interacting repress 99.9 1.8E-26 6.2E-31 223.2 16.2 169 341-522 30-203 (216)
9 1fxl_A Paraneoplastic encephal 99.9 6.5E-26 2.2E-30 209.6 17.0 156 341-520 4-166 (167)
10 2ghp_A U4/U6 snRNA-associated 99.9 1.7E-25 5.7E-30 227.7 21.7 155 350-523 132-290 (292)
11 1b7f_A Protein (SXL-lethal pro 99.9 6.4E-26 2.2E-30 210.6 15.2 157 341-521 5-168 (168)
12 3nmr_A Cugbp ELAV-like family 99.9 1.4E-25 4.7E-30 209.3 15.5 159 340-521 4-174 (175)
13 1fje_B Nucleolin RBD12, protei 99.9 3.3E-26 1.1E-30 215.0 11.2 145 350-523 28-173 (175)
14 2g4b_A Splicing factor U2AF 65 99.9 1.6E-25 5.6E-30 209.0 15.4 144 350-522 19-172 (172)
15 2yh0_A Splicing factor U2AF 65 99.9 3.8E-25 1.3E-29 211.0 14.4 161 350-523 19-193 (198)
16 3pgw_A U1-A; protein-RNA compl 99.9 7.1E-23 2.4E-27 207.3 18.2 168 341-522 11-281 (282)
17 3sde_A Paraspeckle component 1 99.9 5.1E-23 1.7E-27 207.9 15.3 149 340-523 23-178 (261)
18 3tyt_A Heterogeneous nuclear r 99.9 5.9E-23 2E-27 201.7 14.0 163 341-514 6-193 (205)
19 2adc_A Polypyrimidine tract-bi 99.9 1E-21 3.5E-26 194.4 15.8 156 350-523 50-227 (229)
20 1qm9_A Polypyrimidine tract-bi 99.9 5.2E-22 1.8E-26 190.5 11.4 167 341-522 5-195 (198)
21 1l3k_A Heterogeneous nuclear r 99.9 2.5E-21 8.6E-26 184.3 14.9 125 437-611 12-137 (196)
22 2kn4_A Immunoglobulin G-bindin 99.8 1E-20 3.5E-25 176.5 13.6 143 367-522 2-148 (158)
23 4f02_A Polyadenylate-binding p 99.8 1.4E-20 4.7E-25 184.3 14.0 121 437-611 14-136 (213)
24 2cjk_A Nuclear polyadenylated 99.8 1.4E-20 4.8E-25 174.7 11.1 117 438-611 3-120 (167)
25 3md3_A Nuclear and cytoplasmic 99.8 3.9E-20 1.3E-24 170.6 13.9 119 439-611 1-120 (166)
26 1fxl_A Paraneoplastic encephal 99.8 3.5E-20 1.2E-24 171.1 12.9 118 438-611 2-121 (167)
27 1b7f_A Protein (SXL-lethal pro 99.8 3.9E-20 1.3E-24 171.5 12.4 118 438-611 3-122 (168)
28 2dha_A FLJ20171 protein; RRM d 99.8 4.1E-20 1.4E-24 168.4 11.1 101 431-535 16-116 (123)
29 2qfj_A FBP-interacting repress 99.8 2.5E-20 8.4E-25 180.1 9.8 129 437-611 27-158 (216)
30 3nmr_A Cugbp ELAV-like family 99.8 1.9E-19 6.7E-24 167.6 12.4 119 438-611 3-128 (175)
31 1fje_B Nucleolin RBD12, protei 99.8 1.4E-19 4.6E-24 169.8 9.2 118 437-608 12-129 (175)
32 4f25_A Polyadenylate-binding p 99.8 3.6E-19 1.2E-23 158.8 8.5 75 439-522 6-81 (115)
33 2yh0_A Splicing factor U2AF 65 99.8 1.1E-19 3.8E-24 173.2 5.2 142 438-611 4-147 (198)
34 2g4b_A Splicing factor U2AF 65 99.8 2.9E-19 9.7E-24 166.6 6.7 117 438-611 4-127 (172)
35 2i2y_A Fusion protein consists 99.8 1.4E-18 4.9E-23 161.2 11.3 134 377-523 11-147 (150)
36 2db1_A Heterogeneous nuclear r 99.8 3.1E-18 1E-22 153.7 12.9 94 436-534 15-108 (118)
37 3pgw_A U1-A; protein-RNA compl 99.8 6.1E-18 2.1E-22 171.0 16.7 77 437-523 8-89 (282)
38 2dnn_A RNA-binding protein 12; 99.8 2.6E-18 9E-23 153.1 11.2 86 437-531 15-100 (109)
39 2adc_A Polypyrimidine tract-bi 99.7 1.4E-17 4.9E-22 164.6 16.4 149 436-610 32-184 (229)
40 2hgl_A HNRPF protein, heteroge 99.7 3.3E-18 1.1E-22 158.4 10.5 92 437-533 43-134 (136)
41 3tyt_A Heterogeneous nuclear r 99.7 5.1E-18 1.8E-22 166.5 11.6 147 437-610 3-157 (205)
42 1qm9_A Polypyrimidine tract-bi 99.7 1.4E-17 4.7E-22 159.7 14.2 147 438-610 3-153 (198)
43 2lmi_A GRSF-1, G-rich sequence 99.7 2.7E-18 9.1E-23 151.1 7.8 93 437-534 10-102 (107)
44 3sde_A Paraspeckle component 1 99.7 1.5E-17 5.3E-22 167.7 12.5 108 437-611 21-129 (261)
45 1wg5_A Heterogeneous nuclear r 99.7 4.8E-18 1.7E-22 148.7 5.1 83 437-526 14-96 (104)
46 2cpy_A RNA-binding protein 12; 99.7 4.5E-17 1.5E-21 144.8 11.3 87 437-531 14-101 (114)
47 2hgm_A HNRPF protein, heteroge 99.7 1.5E-17 5.2E-22 152.2 6.6 84 437-527 41-124 (126)
48 4fxv_A ELAV-like protein 1; RN 99.7 9.1E-17 3.1E-21 140.0 11.2 79 437-523 18-98 (99)
49 1wez_A HnRNP H', FTP-3, hetero 99.7 1.6E-17 5.5E-22 145.6 6.0 78 437-523 14-91 (102)
50 1wel_A RNA-binding protein 12; 99.7 1E-16 3.6E-21 144.3 8.5 91 436-533 23-113 (124)
51 3s8s_A Histone-lysine N-methyl 99.7 6.3E-16 2.2E-20 137.4 12.1 81 437-525 5-87 (110)
52 3s7r_A Heterogeneous nuclear r 99.6 7E-16 2.4E-20 129.6 11.3 77 437-521 10-87 (87)
53 2lxi_A RNA-binding protein 10; 99.6 1.5E-16 5.2E-21 136.3 6.7 77 439-522 2-81 (91)
54 2dgw_A Probable RNA-binding pr 99.6 7E-16 2.4E-20 130.9 10.6 78 437-523 9-86 (91)
55 2lkz_A RNA-binding protein 5; 99.6 2.7E-16 9.1E-21 136.7 8.1 79 438-522 9-93 (95)
56 1s79_A Lupus LA protein; RRM, 99.6 4.8E-16 1.6E-20 136.8 8.6 79 437-523 10-88 (103)
57 2hgn_A Heterogeneous nuclear r 99.6 4.8E-17 1.6E-21 151.1 2.3 80 437-525 45-124 (139)
58 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.5E-15 5.1E-20 127.2 11.1 79 437-523 5-85 (87)
59 3md1_A Nuclear and cytoplasmic 99.6 1.2E-15 3.9E-20 126.8 10.2 77 439-523 2-80 (83)
60 2ywk_A Putative RNA-binding pr 99.6 1.8E-15 6.1E-20 129.0 10.8 78 437-522 15-93 (95)
61 3p5t_L Cleavage and polyadenyl 99.6 4.5E-16 1.5E-20 132.3 7.0 79 439-523 2-82 (90)
62 2mss_A Protein (musashi1); RNA 99.6 5.1E-16 1.8E-20 126.9 6.7 73 441-521 2-75 (75)
63 3ucg_A Polyadenylate-binding p 99.6 1.2E-15 4.3E-20 128.2 9.2 77 438-522 6-83 (89)
64 2dgs_A DAZ-associated protein 99.6 1.5E-15 5.1E-20 130.8 9.3 79 437-523 9-88 (99)
65 2do4_A Squamous cell carcinoma 99.6 2.2E-15 7.5E-20 130.0 10.1 78 437-522 16-94 (100)
66 3n9u_C Cleavage and polyadenyl 99.6 4.2E-15 1.4E-19 140.2 12.6 86 437-528 54-141 (156)
67 1whw_A Hypothetical protein ri 99.6 2.6E-15 9E-20 129.1 9.7 79 437-523 7-87 (99)
68 3ulh_A THO complex subunit 4; 99.6 4.9E-15 1.7E-19 129.1 11.3 79 436-522 27-106 (107)
69 2la6_A RNA-binding protein FUS 99.6 3.5E-15 1.2E-19 128.6 10.3 77 437-521 12-98 (99)
70 2cqc_A Arginine/serine-rich sp 99.6 5.8E-15 2E-19 125.6 11.5 78 437-522 14-93 (95)
71 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.1E-15 1.1E-19 124.7 9.5 77 437-521 6-84 (85)
72 3ns6_A Eukaryotic translation 99.6 1.1E-15 3.9E-20 132.8 7.0 81 437-525 5-94 (100)
73 2x1f_A MRNA 3'-END-processing 99.6 3.5E-15 1.2E-19 127.9 9.9 79 438-524 2-82 (96)
74 1x5t_A Splicing factor 3B subu 99.6 3.1E-15 1.1E-19 127.7 9.4 79 437-523 4-85 (96)
75 2ek1_A RNA-binding protein 12; 99.6 2.5E-15 8.7E-20 128.0 8.5 78 437-522 14-93 (95)
76 2dng_A Eukaryotic translation 99.6 5E-15 1.7E-19 128.6 10.2 78 436-522 13-91 (103)
77 2cq4_A RNA binding motif prote 99.6 3.8E-15 1.3E-19 131.6 9.5 81 437-525 24-105 (114)
78 2dnz_A Probable RNA-binding pr 99.6 4.2E-15 1.4E-19 126.6 9.5 78 437-522 4-83 (95)
79 1iqt_A AUF1, heterogeneous nuc 99.6 8.1E-16 2.8E-20 125.5 4.7 74 440-521 1-75 (75)
80 2dh8_A DAZ-associated protein 99.6 2.5E-15 8.5E-20 130.8 7.9 79 436-522 14-93 (105)
81 2do0_A HnRNP M, heterogeneous 99.6 7.1E-15 2.4E-19 129.5 10.8 79 437-523 14-93 (114)
82 2dgo_A Cytotoxic granule-assoc 99.6 8.3E-15 2.8E-19 129.5 11.1 80 436-523 13-94 (115)
83 2cq0_A Eukaryotic translation 99.6 5E-15 1.7E-19 128.4 9.5 79 436-522 13-93 (103)
84 1x5u_A Splicing factor 3B subu 99.6 5.6E-15 1.9E-19 128.4 9.6 80 436-523 13-94 (105)
85 2cqp_A RNA-binding protein 12; 99.6 4.3E-15 1.5E-19 127.5 8.7 78 437-522 14-93 (98)
86 2dnh_A Bruno-like 5, RNA bindi 99.6 6.3E-15 2.2E-19 128.0 9.8 79 437-523 14-96 (105)
87 2cpz_A CUG triplet repeat RNA- 99.6 5.6E-15 1.9E-19 130.8 9.6 78 437-522 24-103 (115)
88 2rs2_A Musashi-1, RNA-binding 99.6 5E-15 1.7E-19 130.8 9.2 78 437-522 24-102 (109)
89 2fy1_A RNA-binding motif prote 99.6 5.7E-15 2E-19 132.0 9.5 79 437-523 6-85 (116)
90 3lqv_A PRE-mRNA branch site pr 99.6 5.6E-15 1.9E-19 130.6 9.4 77 437-523 7-84 (115)
91 2e5h_A Zinc finger CCHC-type a 99.6 6.8E-15 2.3E-19 125.1 9.5 77 437-521 15-93 (94)
92 1p27_B RNA-binding protein 8A; 99.6 7E-15 2.4E-19 127.9 9.7 79 437-523 22-102 (106)
93 2cqb_A Peptidyl-prolyl CIS-tra 99.6 4.8E-15 1.6E-19 128.1 8.5 79 437-523 11-91 (102)
94 2cqg_A TDP-43, TAR DNA-binding 99.6 9.1E-15 3.1E-19 126.7 10.2 78 437-523 14-92 (103)
95 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1E-14 3.6E-19 137.6 11.3 132 384-523 11-151 (165)
96 2d9p_A Polyadenylate-binding p 99.6 6.3E-15 2.2E-19 127.8 9.0 78 437-523 14-92 (103)
97 1p1t_A Cleavage stimulation fa 99.6 6.2E-15 2.1E-19 127.7 8.9 83 438-528 8-92 (104)
98 2dnn_A RNA-binding protein 12; 99.6 1.8E-15 6.3E-20 134.7 5.6 87 338-424 15-101 (109)
99 1x4b_A Heterogeneous nuclear r 99.6 7.4E-15 2.5E-19 130.2 9.5 79 437-523 26-105 (116)
100 2cpf_A RNA binding motif prote 99.6 6.5E-15 2.2E-19 126.4 8.8 78 437-522 4-86 (98)
101 2kt5_A RNA and export factor-b 99.6 1E-14 3.4E-19 131.0 10.4 79 437-523 34-113 (124)
102 1wi8_A EIF-4B, eukaryotic tran 99.6 6.7E-15 2.3E-19 128.0 9.0 79 436-523 13-93 (104)
103 2dhg_A TRNA selenocysteine ass 99.6 4.2E-15 1.4E-19 128.9 7.6 78 437-522 8-88 (104)
104 1x5s_A Cold-inducible RNA-bind 99.6 5.9E-15 2E-19 127.5 8.1 78 437-522 11-90 (102)
105 2dgv_A HnRNP M, heterogeneous 99.6 9.9E-15 3.4E-19 123.6 9.3 77 437-522 7-84 (92)
106 2cq3_A RNA-binding protein 9; 99.6 1.9E-14 6.6E-19 124.7 11.3 79 436-523 13-92 (103)
107 2dnm_A SRP46 splicing factor; 99.6 5.1E-15 1.8E-19 128.3 7.6 78 437-522 12-91 (103)
108 1uaw_A Mouse-musashi-1; RNP-ty 99.6 3.7E-15 1.3E-19 122.0 6.3 74 440-521 2-76 (77)
109 2cpe_A RNA-binding protein EWS 99.6 1E-14 3.5E-19 128.5 9.6 78 437-522 14-101 (113)
110 2jwn_A Embryonic polyadenylate 99.6 8.6E-15 2.9E-19 131.1 9.3 78 437-522 35-113 (124)
111 2wbr_A GW182, gawky, LD47780P; 99.6 1.1E-14 3.8E-19 125.4 9.4 79 439-530 8-87 (89)
112 1x4h_A RNA-binding protein 28; 99.6 1.1E-14 3.9E-19 127.4 9.7 79 437-523 14-100 (111)
113 1oo0_B CG8781-PA, drosophila Y 99.5 1.1E-14 3.7E-19 127.7 9.5 79 437-523 25-105 (110)
114 2jrs_A RNA-binding protein 39; 99.5 8.9E-15 3E-19 129.1 9.0 80 436-523 24-105 (108)
115 2fc9_A NCL protein; structure 99.5 1E-14 3.6E-19 125.9 9.2 76 437-523 14-90 (101)
116 2khc_A Testis-specific RNP-typ 99.5 7.4E-15 2.5E-19 130.4 8.4 78 436-521 38-117 (118)
117 2cph_A RNA binding motif prote 99.5 1.1E-14 3.6E-19 126.8 9.0 79 437-523 14-96 (107)
118 2lea_A Serine/arginine-rich sp 99.5 2.4E-15 8.4E-20 138.1 5.2 117 381-522 6-125 (135)
119 2xs2_A Deleted in azoospermia- 99.5 6.3E-15 2.1E-19 127.6 7.5 78 437-523 8-85 (102)
120 4a8x_A RNA-binding protein wit 99.5 1E-14 3.5E-19 122.2 8.3 77 438-522 4-83 (88)
121 2j76_E EIF-4B, EIF4B, eukaryot 99.5 2.8E-15 9.7E-20 129.9 4.9 78 437-523 18-97 (100)
122 2div_A TRNA selenocysteine ass 99.5 1.3E-14 4.4E-19 124.7 8.9 78 437-522 8-92 (99)
123 2cqi_A Nucleolysin TIAR; RNA r 99.5 2.4E-14 8.2E-19 124.1 10.5 78 437-523 14-92 (103)
124 1u6f_A Tcubp1, RNA-binding pro 99.5 1.8E-14 6.1E-19 131.5 9.4 79 437-523 41-121 (139)
125 2dgx_A KIAA0430 protein; RRM d 99.5 2.2E-14 7.6E-19 123.4 9.4 76 437-522 8-88 (96)
126 2dgp_A Bruno-like 4, RNA bindi 99.5 1.3E-14 4.3E-19 126.3 7.9 79 437-523 12-95 (106)
127 2cqd_A RNA-binding region cont 99.5 2.8E-14 9.7E-19 126.4 10.2 78 436-522 15-94 (116)
128 2err_A Ataxin-2-binding protei 99.5 1.7E-14 6E-19 127.2 8.7 78 437-523 28-106 (109)
129 1x4e_A RNA binding motif, sing 99.5 4.5E-15 1.5E-19 124.1 4.2 76 437-520 4-81 (85)
130 4f25_A Polyadenylate-binding p 99.5 7.5E-15 2.6E-19 130.7 5.8 104 342-454 8-113 (115)
131 2hvz_A Splicing factor, argini 99.5 2E-14 7E-19 124.1 8.2 72 440-523 2-74 (101)
132 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2.9E-14 9.9E-19 129.5 9.5 78 436-521 61-140 (140)
133 2krb_A Eukaryotic translation 99.5 8.4E-15 2.9E-19 121.9 5.3 71 439-518 2-80 (81)
134 2m2b_A RNA-binding protein 10; 99.5 6.3E-15 2.2E-19 134.0 5.0 81 436-523 21-107 (131)
135 2ki2_A SS-DNA binding protein 99.5 6.6E-15 2.3E-19 124.4 4.1 77 439-524 2-80 (90)
136 3ex7_B RNA-binding protein 8A; 99.5 2.9E-14 1E-18 127.9 8.2 79 437-523 21-101 (126)
137 2kxn_B Transformer-2 protein h 99.5 2E-14 6.8E-19 131.1 7.1 79 436-522 44-124 (129)
138 3q2s_C Cleavage and polyadenyl 99.5 5E-14 1.7E-18 140.6 10.5 87 437-529 67-155 (229)
139 1fj7_A Nucleolin RBD1, protein 99.5 4.6E-15 1.6E-19 128.2 2.5 77 437-522 16-93 (101)
140 2cpi_A CCR4-NOT transcription 99.5 2.2E-14 7.5E-19 126.8 6.8 78 438-523 15-100 (111)
141 2fc8_A NCL protein; structure 99.5 4.8E-14 1.6E-18 121.8 8.8 76 437-523 14-91 (102)
142 1h2v_Z 20 kDa nuclear CAP bind 99.5 8.9E-14 3E-18 129.6 11.2 79 437-523 38-118 (156)
143 2dis_A Unnamed protein product 99.5 3.3E-14 1.1E-18 124.3 7.7 80 437-523 7-91 (109)
144 2nlw_A Eukaryotic translation 99.5 2.5E-14 8.5E-19 125.2 6.6 77 437-522 14-98 (105)
145 1x5o_A RNA binding motif, sing 99.5 7E-14 2.4E-18 123.3 9.1 78 437-522 24-110 (114)
146 1x4a_A Splicing factor, argini 99.5 1E-13 3.6E-18 121.4 9.9 77 436-522 20-97 (109)
147 2jvr_A Nucleolar protein 3; RN 99.5 6.9E-14 2.3E-18 125.0 8.8 76 437-522 27-103 (111)
148 1sjq_A Polypyrimidine tract-bi 99.5 3.6E-14 1.2E-18 126.0 6.6 74 437-523 15-91 (105)
149 1fjc_A Nucleolin RBD2, protein 99.5 5E-14 1.7E-18 120.4 7.2 74 437-522 15-89 (96)
150 3r27_A HnRNP L, heterogeneous 99.5 9.6E-14 3.3E-18 122.2 8.5 76 437-525 20-98 (100)
151 2hgm_A HNRPF protein, heteroge 99.5 2.1E-14 7E-19 131.4 3.7 80 340-419 43-124 (126)
152 1x4c_A Splicing factor, argini 99.5 2.2E-13 7.5E-18 119.6 9.9 73 437-523 14-92 (108)
153 2voo_A Lupus LA protein; RNA-b 99.4 2.4E-13 8.1E-18 132.3 11.0 77 438-522 109-185 (193)
154 2cq1_A PTB-like protein L; RRM 99.4 1.4E-13 4.9E-18 120.8 8.2 74 437-523 14-90 (101)
155 2la4_A Nuclear and cytoplasmic 99.4 1.4E-13 4.7E-18 118.9 7.6 73 437-522 26-99 (101)
156 1wez_A HnRNP H', FTP-3, hetero 99.4 6.9E-14 2.4E-18 122.4 5.6 77 340-416 16-92 (102)
157 2dha_A FLJ20171 protein; RRM d 99.4 3E-14 1E-18 129.6 3.4 82 340-421 24-110 (123)
158 1nu4_A U1A RNA binding domain; 99.4 8.6E-14 3E-18 118.9 6.0 77 437-523 7-88 (97)
159 2f3j_A RNA and export factor b 99.4 2E-13 7E-18 131.1 9.1 79 437-523 87-166 (177)
160 2ad9_A Polypyrimidine tract-bi 99.4 1.4E-13 4.8E-18 124.8 7.4 75 437-524 30-107 (119)
161 3d2w_A TAR DNA-binding protein 99.4 2E-13 7E-18 116.4 8.0 76 437-525 10-85 (89)
162 2e5j_A Methenyltetrahydrofolat 99.4 1.8E-13 6.2E-18 117.6 7.6 75 437-523 18-93 (97)
163 2dnq_A RNA-binding protein 4B; 99.4 3.5E-13 1.2E-17 114.1 8.9 71 437-522 7-78 (90)
164 2lcw_A RNA-binding protein FUS 99.1 1.3E-14 4.5E-19 128.7 0.0 80 437-524 6-95 (116)
165 1wg5_A Heterogeneous nuclear r 99.4 1.2E-13 4.1E-18 120.7 6.0 80 341-420 17-98 (104)
166 2j8a_A Histone-lysine N-methyl 99.4 4.7E-13 1.6E-17 122.9 9.9 80 439-526 3-98 (136)
167 2a3j_A U1 small nuclear ribonu 99.4 2.7E-13 9.1E-18 123.9 8.2 78 437-524 28-110 (127)
168 1wex_A Hypothetical protein (r 99.4 2.7E-13 9.1E-18 119.6 7.9 74 437-523 14-90 (104)
169 2cpx_A Hypothetical protein FL 99.4 2.5E-13 8.5E-18 119.8 7.5 80 437-523 24-104 (115)
170 2ytc_A PRE-mRNA-splicing facto 99.4 5.4E-13 1.9E-17 111.2 9.1 72 437-521 11-84 (85)
171 2hzc_A Splicing factor U2AF 65 99.4 2.9E-13 9.9E-18 113.2 7.4 78 437-520 5-86 (87)
172 1x4g_A Nucleolysin TIAR; struc 99.4 3.9E-13 1.3E-17 117.9 8.5 74 436-522 23-97 (109)
173 2xnq_A Nuclear polyadenylated 99.4 6.2E-13 2.1E-17 114.9 9.6 71 437-522 21-93 (97)
174 2hgl_A HNRPF protein, heteroge 99.4 1.1E-13 3.6E-18 128.1 5.0 81 341-421 46-130 (136)
175 1why_A Hypothetical protein ri 99.4 5E-13 1.7E-17 114.7 8.8 73 437-522 16-91 (97)
176 2db1_A Heterogeneous nuclear r 99.4 1.3E-13 4.6E-18 123.4 5.2 80 341-420 19-102 (118)
177 2cpj_A Non-POU domain-containi 99.4 3E-13 1E-17 116.4 7.2 74 437-523 14-88 (99)
178 2jvo_A Nucleolar protein 3; nu 99.4 6.4E-13 2.2E-17 117.3 8.8 73 436-523 29-102 (108)
179 2cpd_A Apobec-1 stimulating pr 99.4 1.2E-12 4.2E-17 112.6 10.2 71 437-522 14-87 (99)
180 2dnp_A RNA-binding protein 14; 99.4 6.5E-13 2.2E-17 112.4 8.2 71 437-522 8-79 (90)
181 2e5g_A U6 snRNA-specific termi 99.4 5.5E-13 1.9E-17 113.9 7.7 72 438-522 8-80 (94)
182 2cqh_A IGF-II mRNA-binding pro 99.4 4.1E-13 1.4E-17 114.1 6.9 73 437-522 7-81 (93)
183 1whx_A Hypothetical protein ri 99.4 5.2E-13 1.8E-17 118.3 7.8 74 437-523 9-83 (111)
184 1x4d_A Matrin 3; structural ge 99.4 3.1E-13 1.1E-17 119.1 6.0 73 437-522 14-90 (102)
185 2dgt_A RNA-binding protein 30; 99.4 1.6E-12 5.4E-17 110.4 10.2 71 437-522 9-80 (92)
186 3egn_A RNA-binding protein 40; 99.4 4.8E-13 1.6E-17 122.9 7.4 80 437-522 44-128 (143)
187 2dgu_A Heterogeneous nuclear r 99.4 7.7E-13 2.6E-17 114.8 8.3 72 437-523 10-82 (103)
188 1wg1_A KIAA1579 protein, homol 99.4 7.3E-13 2.5E-17 111.9 7.8 71 438-522 5-76 (88)
189 2dnl_A Cytoplasmic polyadenyla 99.4 6.9E-13 2.4E-17 117.7 7.7 75 437-521 7-85 (114)
190 1x4f_A Matrin 3; structural ge 99.4 5.1E-13 1.7E-17 119.8 6.3 74 436-522 23-100 (112)
191 2kvi_A Nuclear polyadenylated 99.3 9.1E-13 3.1E-17 113.1 6.7 71 437-522 9-81 (96)
192 3beg_B Splicing factor, argini 99.3 6.8E-13 2.3E-17 118.1 6.1 73 437-523 15-93 (115)
193 2dgw_A Probable RNA-binding pr 99.3 9.8E-13 3.4E-17 111.4 6.7 76 341-416 12-87 (91)
194 2lmi_A GRSF-1, G-rich sequence 99.3 6.6E-13 2.2E-17 116.5 5.8 80 341-420 13-96 (107)
195 1wf1_A RNA-binding protein RAL 99.3 1.5E-12 5.2E-17 114.3 8.0 71 437-522 26-98 (110)
196 1wf0_A TDP-43, TAR DNA-binding 99.3 6.3E-13 2.1E-17 112.0 5.2 73 437-522 4-76 (88)
197 2cpy_A RNA-binding protein 12; 99.3 5.9E-13 2E-17 118.1 5.3 81 340-420 16-98 (114)
198 2pe8_A Splicing factor 45; RRM 99.3 5.4E-12 1.9E-16 111.4 11.2 83 437-527 7-97 (105)
199 2hgn_A Heterogeneous nuclear r 99.3 2.6E-13 8.9E-18 126.0 2.0 78 341-418 48-125 (139)
200 2e44_A Insulin-like growth fac 99.3 1.4E-12 4.9E-17 111.2 6.4 77 437-524 14-92 (96)
201 1x5p_A Negative elongation fac 99.3 4.8E-12 1.6E-16 108.7 9.0 71 437-522 14-85 (97)
202 3pgw_S U1-70K; protein-RNA com 99.3 6.2E-12 2.1E-16 136.9 10.2 79 438-524 102-182 (437)
203 4fxv_A ELAV-like protein 1; RN 99.3 3.3E-12 1.1E-16 111.1 6.5 74 341-414 21-97 (99)
204 1sjr_A Polypyrimidine tract-bi 99.3 7.7E-12 2.6E-16 119.3 9.0 76 438-524 46-124 (164)
205 2cq2_A Hypothetical protein LO 99.3 5E-12 1.7E-16 113.8 7.1 73 437-522 24-104 (114)
206 1wel_A RNA-binding protein 12; 99.3 1.5E-12 5E-17 117.1 3.6 80 340-419 26-107 (124)
207 3s8s_A Histone-lysine N-methyl 99.3 5.9E-12 2E-16 111.7 7.3 76 341-416 8-86 (110)
208 1s79_A Lupus LA protein; RRM, 99.3 4E-12 1.4E-16 111.6 5.8 74 341-414 13-87 (103)
209 3s7r_A Heterogeneous nuclear r 99.3 7.1E-12 2.4E-16 105.0 6.8 73 341-413 13-87 (87)
210 3p5t_L Cleavage and polyadenyl 99.2 3E-12 1E-16 108.6 4.4 75 341-415 3-82 (90)
211 3lqv_A PRE-mRNA branch site pr 99.2 5.2E-12 1.8E-16 111.4 6.0 98 341-464 10-109 (115)
212 2lxi_A RNA-binding protein 10; 99.2 2.2E-12 7.7E-17 110.2 3.3 75 341-415 3-82 (91)
213 3ns6_A Eukaryotic translation 99.2 5.5E-12 1.9E-16 109.4 5.5 77 339-415 6-92 (100)
214 2mss_A Protein (musashi1); RNA 99.2 3.1E-12 1E-16 104.3 3.6 72 342-413 2-75 (75)
215 2lkz_A RNA-binding protein 5; 99.2 9.4E-12 3.2E-16 108.0 6.8 71 344-414 14-93 (95)
216 3zzy_A Polypyrimidine tract-bi 99.2 2.8E-11 9.4E-16 111.3 9.9 75 438-524 28-106 (130)
217 2dng_A Eukaryotic translation 99.2 1.1E-11 3.8E-16 107.3 6.8 77 340-416 16-93 (103)
218 2do4_A Squamous cell carcinoma 99.2 1.8E-11 6.2E-16 105.3 8.0 75 341-415 19-95 (100)
219 3bs9_A Nucleolysin TIA-1 isofo 99.2 1.1E-11 3.8E-16 103.5 6.5 76 340-415 7-85 (87)
220 2ywk_A Putative RNA-binding pr 99.2 1.3E-11 4.5E-16 104.9 6.9 74 341-414 18-93 (95)
221 1whw_A Hypothetical protein ri 99.2 1.9E-11 6.6E-16 104.8 8.0 77 341-417 10-89 (99)
222 2dgs_A DAZ-associated protein 99.2 2.4E-11 8.1E-16 104.3 8.3 76 341-416 12-89 (99)
223 1wi8_A EIF-4B, eukaryotic tran 99.2 1.4E-11 4.9E-16 106.8 6.8 77 340-416 16-94 (104)
224 2j76_E EIF-4B, EIF4B, eukaryot 99.2 5.7E-12 1.9E-16 109.0 4.2 75 341-415 21-97 (100)
225 2e5i_A Heterogeneous nuclear r 99.2 3.5E-11 1.2E-15 109.7 9.5 72 439-523 26-101 (124)
226 1jmt_A Splicing factor U2AF 35 99.2 6E-12 2.1E-16 110.8 4.2 71 443-521 20-103 (104)
227 3md1_A Nuclear and cytoplasmic 99.2 1.8E-11 6.2E-16 101.3 6.7 76 341-416 3-81 (83)
228 2dnz_A Probable RNA-binding pr 99.2 3.1E-11 1.1E-15 102.6 7.7 76 341-416 7-85 (95)
229 1x5t_A Splicing factor 3B subu 99.2 2.3E-11 7.7E-16 103.6 6.8 76 341-416 7-86 (96)
230 3ucg_A Polyadenylate-binding p 99.2 1.8E-11 6.3E-16 102.6 6.1 75 341-415 8-84 (89)
231 2bz2_A Negative elongation fac 99.2 3.6E-11 1.2E-15 108.4 8.2 72 437-523 38-110 (121)
232 2do0_A HnRNP M, heterogeneous 99.2 3.4E-11 1.1E-15 105.9 7.8 75 341-415 17-93 (114)
233 3ulh_A THO complex subunit 4; 99.2 2.6E-11 8.8E-16 105.4 6.9 74 341-414 31-106 (107)
234 3v4m_A Splicing factor U2AF 65 99.2 4.8E-11 1.7E-15 105.2 8.7 83 437-527 4-100 (105)
235 2la6_A RNA-binding protein FUS 99.2 2.8E-11 9.5E-16 104.1 6.5 72 342-413 16-98 (99)
236 1u6f_A Tcubp1, RNA-binding pro 99.2 2.7E-10 9.2E-15 103.7 13.4 64 350-416 57-122 (139)
237 1x5u_A Splicing factor 3B subu 99.2 3.4E-11 1.2E-15 104.3 7.1 73 344-416 20-95 (105)
238 1iqt_A AUF1, heterogeneous nuc 99.2 7E-12 2.4E-16 102.0 2.5 71 342-412 2-74 (75)
239 2e5h_A Zinc finger CCHC-type a 99.2 4.8E-11 1.6E-15 101.2 7.7 73 341-413 18-93 (94)
240 3n9u_C Cleavage and polyadenyl 99.2 5.3E-11 1.8E-15 112.1 8.8 76 341-416 57-137 (156)
241 2hvz_A Splicing factor, argini 99.2 1.2E-11 4.1E-16 106.6 4.0 96 342-447 3-100 (101)
242 2dh8_A DAZ-associated protein 99.2 3.2E-11 1.1E-15 104.6 6.8 76 341-416 18-95 (105)
243 2dhg_A TRNA selenocysteine ass 99.2 2.7E-11 9.2E-16 104.8 6.2 76 341-416 11-90 (104)
244 2dnh_A Bruno-like 5, RNA bindi 99.2 4.4E-11 1.5E-15 103.6 7.5 75 342-416 18-97 (105)
245 2rs2_A Musashi-1, RNA-binding 99.2 3.5E-11 1.2E-15 106.0 7.0 74 343-416 29-104 (109)
246 2cqc_A Arginine/serine-rich sp 99.2 4.4E-11 1.5E-15 101.4 7.4 74 341-414 17-93 (95)
247 3mdf_A Peptidyl-prolyl CIS-tra 99.2 2.8E-11 9.5E-16 100.6 5.8 73 341-413 9-84 (85)
248 2cpz_A CUG triplet repeat RNA- 99.2 1.6E-10 5.4E-15 102.0 11.0 64 350-416 40-105 (115)
249 2diu_A KIAA0430 protein; struc 99.2 4.3E-11 1.5E-15 104.2 7.1 67 439-522 10-82 (96)
250 2d9p_A Polyadenylate-binding p 99.1 7.4E-11 2.5E-15 102.0 8.3 75 341-416 17-93 (103)
251 2cq0_A Eukaryotic translation 99.1 7.3E-11 2.5E-15 102.0 8.1 76 341-416 17-95 (103)
252 2dgo_A Cytotoxic granule-assoc 99.1 5.3E-11 1.8E-15 104.9 7.3 76 341-416 17-95 (115)
253 2dnm_A SRP46 splicing factor; 99.1 3.2E-11 1.1E-15 104.3 5.8 75 341-415 15-92 (103)
254 2fy1_A RNA-binding motif prote 99.1 5.3E-11 1.8E-15 106.1 7.4 77 341-417 9-87 (116)
255 2x1f_A MRNA 3'-END-processing 99.1 4.3E-11 1.5E-15 102.3 6.1 76 341-416 4-82 (96)
256 2kt5_A RNA and export factor-b 99.1 6.5E-11 2.2E-15 106.0 7.5 74 342-415 38-113 (124)
257 2cq4_A RNA binding motif prote 99.1 3.8E-11 1.3E-15 105.8 5.8 76 341-416 27-104 (114)
258 2cpf_A RNA binding motif prote 99.1 4.1E-11 1.4E-15 102.5 5.7 76 341-416 7-88 (98)
259 2cph_A RNA binding motif prote 99.1 8.3E-11 2.8E-15 102.0 7.6 75 342-416 18-97 (107)
260 2ek1_A RNA-binding protein 12; 99.1 2.5E-11 8.5E-16 103.1 4.1 75 340-414 16-93 (95)
261 2wbr_A GW182, gawky, LD47780P; 99.1 3.5E-11 1.2E-15 103.5 4.9 74 341-419 9-84 (89)
262 2dgx_A KIAA0430 protein; RRM d 99.1 9.4E-11 3.2E-15 100.6 7.5 74 340-415 10-89 (96)
263 2err_A Ataxin-2-binding protei 99.1 1.3E-10 4.6E-15 102.2 8.6 71 344-415 34-106 (109)
264 1x4b_A Heterogeneous nuclear r 99.1 6.4E-11 2.2E-15 104.7 6.5 76 341-416 29-106 (116)
265 2cq3_A RNA-binding protein 9; 99.1 1.4E-10 4.6E-15 100.3 8.4 75 341-416 17-93 (103)
266 2cqg_A TDP-43, TAR DNA-binding 99.1 1E-10 3.4E-15 101.1 7.5 63 350-416 30-93 (103)
267 2dit_A HIV TAT specific factor 99.1 1.9E-10 6.4E-15 101.7 9.4 76 437-523 14-101 (112)
268 1x5s_A Cold-inducible RNA-bind 99.1 8E-11 2.7E-15 101.4 6.8 76 341-416 14-92 (102)
269 2fc9_A NCL protein; structure 99.1 7.8E-11 2.7E-15 101.5 6.7 75 340-416 16-91 (101)
270 2dgv_A HnRNP M, heterogeneous 99.1 7.1E-11 2.4E-15 99.7 6.3 74 341-415 10-85 (92)
271 1uaw_A Mouse-musashi-1; RNP-ty 99.1 2.9E-11 1E-15 98.6 3.7 72 342-413 3-76 (77)
272 1x4e_A RNA binding motif, sing 99.1 4.4E-11 1.5E-15 99.7 4.9 73 341-413 7-82 (85)
273 2cqb_A Peptidyl-prolyl CIS-tra 99.1 6.5E-11 2.2E-15 102.0 6.0 76 341-416 14-92 (102)
274 2jrs_A RNA-binding protein 39; 99.1 6.5E-11 2.2E-15 104.2 6.0 74 342-415 29-105 (108)
275 2cqi_A Nucleolysin TIAR; RNA r 99.1 1.8E-10 6.1E-15 99.6 8.6 74 342-416 18-93 (103)
276 2cqp_A RNA-binding protein 12; 99.1 4.3E-11 1.5E-15 102.4 4.7 75 341-415 17-94 (98)
277 2cpe_A RNA-binding protein EWS 99.1 8.5E-11 2.9E-15 103.3 6.6 76 341-416 17-103 (113)
278 2kxn_B Transformer-2 protein h 99.1 1.2E-10 4.2E-15 106.0 7.8 75 341-415 48-125 (129)
279 1p27_B RNA-binding protein 8A; 99.1 8.3E-11 2.8E-15 102.0 6.4 75 341-415 25-102 (106)
280 3ue2_A Poly(U)-binding-splicin 99.1 2.3E-10 7.8E-15 103.3 9.3 83 437-527 19-112 (118)
281 2khc_A Testis-specific RNP-typ 99.1 3.8E-10 1.3E-14 99.8 10.4 73 341-413 42-117 (118)
282 1x4h_A RNA-binding protein 28; 99.1 1.4E-10 4.7E-15 101.3 7.4 75 342-416 18-101 (111)
283 2krb_A Eukaryotic translation 99.1 3.8E-11 1.3E-15 99.6 3.6 69 341-410 3-80 (81)
284 2fc8_A NCL protein; structure 99.1 1.3E-10 4.5E-15 100.1 7.0 74 341-416 17-92 (102)
285 2dgp_A Bruno-like 4, RNA bindi 99.1 9.9E-11 3.4E-15 101.6 6.2 76 341-416 15-96 (106)
286 2jwn_A Embryonic polyadenylate 99.1 6.4E-11 2.2E-15 105.8 5.1 73 343-415 40-114 (124)
287 1p1t_A Cleavage stimulation fa 99.1 6.5E-11 2.2E-15 102.2 4.8 76 341-416 10-88 (104)
288 2xs2_A Deleted in azoospermia- 99.1 4.3E-11 1.5E-15 103.3 3.3 74 341-415 11-85 (102)
289 2nlw_A Eukaryotic translation 99.1 1.1E-10 3.8E-15 101.9 6.0 73 342-415 18-99 (105)
290 1oo0_B CG8781-PA, drosophila Y 99.1 1.3E-10 4.4E-15 101.6 6.1 75 341-415 28-105 (110)
291 2m2b_A RNA-binding protein 10; 99.1 2.5E-10 8.6E-15 103.5 8.2 71 344-415 28-107 (131)
292 2div_A TRNA selenocysteine ass 99.1 1.2E-10 4.1E-15 99.8 5.6 75 341-415 11-93 (99)
293 2ki2_A SS-DNA binding protein 99.1 6.2E-11 2.1E-15 99.8 3.5 75 341-416 3-80 (90)
294 2cpi_A CCR4-NOT transcription 99.1 1.6E-10 5.6E-15 101.8 6.4 76 341-416 17-101 (111)
295 3u1l_A PRE-mRNA-splicing facto 99.1 1.7E-10 5.9E-15 116.3 7.4 74 437-523 133-228 (240)
296 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.0 2.1E-10 7.1E-15 103.9 6.8 71 342-412 66-139 (140)
297 2kn4_A Immunoglobulin G-bindin 99.0 1.8E-10 6.3E-15 106.9 6.4 73 343-415 74-149 (158)
298 2cqd_A RNA-binding region cont 99.0 2.1E-10 7.2E-15 101.4 6.4 74 342-415 20-95 (116)
299 1fj7_A Nucleolin RBD1, protein 99.0 3.9E-11 1.3E-15 103.4 1.4 64 350-416 32-95 (101)
300 3ex7_B RNA-binding protein 8A; 99.0 2.1E-10 7.2E-15 102.7 6.1 75 341-415 24-101 (126)
301 4a8x_A RNA-binding protein wit 99.0 1.3E-10 4.5E-15 96.9 4.3 75 341-415 6-84 (88)
302 2dis_A Unnamed protein product 99.0 3.1E-10 1.1E-14 98.9 6.3 78 339-416 8-92 (109)
303 1x5o_A RNA binding motif, sing 99.0 4.7E-10 1.6E-14 98.6 7.5 74 340-413 26-109 (114)
304 3q2s_C Cleavage and polyadenyl 99.0 1.5E-10 5.3E-15 115.4 4.7 76 341-416 70-150 (229)
305 1x4a_A Splicing factor, argini 99.0 6.2E-10 2.1E-14 97.2 8.1 74 341-416 24-99 (109)
306 2jvr_A Nucleolar protein 3; RN 99.0 2.5E-10 8.4E-15 101.9 5.1 73 340-415 29-104 (111)
307 1h2v_Z 20 kDa nuclear CAP bind 99.0 5.1E-10 1.7E-14 104.1 7.2 75 341-415 41-118 (156)
308 2lea_A Serine/arginine-rich sp 99.0 3.1E-10 1E-14 104.0 4.9 75 341-415 49-126 (135)
309 2voo_A Lupus LA protein; RNA-b 99.0 4.4E-10 1.5E-14 109.2 6.2 74 341-414 111-185 (193)
310 2pe8_A Splicing factor 45; RRM 99.0 9.1E-10 3.1E-14 97.1 7.7 69 351-419 25-97 (105)
311 2a3j_A U1 small nuclear ribonu 99.0 1.4E-09 4.9E-14 99.2 9.0 66 349-416 43-110 (127)
312 2lcw_A RNA-binding protein FUS 98.5 6.4E-11 2.2E-15 104.8 0.0 78 340-417 8-96 (116)
313 1sjq_A Polypyrimidine tract-bi 99.0 5.3E-10 1.8E-14 99.1 5.8 71 341-416 18-92 (105)
314 1wg1_A KIAA1579 protein, homol 98.9 6.4E-10 2.2E-14 93.7 5.6 71 341-416 7-78 (88)
315 1fjc_A Nucleolin RBD2, protein 98.9 3.2E-10 1.1E-14 96.5 3.8 72 341-415 18-90 (96)
316 3r27_A HnRNP L, heterogeneous 98.9 1.1E-09 3.7E-14 96.3 7.2 71 341-416 23-97 (100)
317 2la4_A Nuclear and cytoplasmic 98.9 8.7E-10 3E-14 94.8 6.0 68 342-414 30-99 (101)
318 3s6e_A RNA-binding protein 39; 98.9 5.9E-09 2E-13 93.5 11.6 83 438-531 7-100 (114)
319 1x4c_A Splicing factor, argini 98.9 1.3E-09 4.4E-14 95.4 6.9 70 341-416 17-93 (108)
320 1nu4_A U1A RNA binding domain; 98.9 3.4E-10 1.2E-14 96.4 3.1 74 341-416 10-89 (97)
321 2d9o_A DNAJ (HSP40) homolog, s 98.9 2.9E-09 1E-13 93.3 9.1 62 448-522 27-88 (100)
322 2f3j_A RNA and export factor b 98.9 9.2E-10 3.2E-14 105.6 6.1 64 350-416 103-167 (177)
323 2cq1_A PTB-like protein L; RRM 98.9 2E-09 6.9E-14 94.3 7.6 72 341-417 17-92 (101)
324 2hzc_A Splicing factor U2AF 65 98.9 1.1E-09 3.9E-14 91.1 4.9 66 342-412 9-86 (87)
325 2ad9_A Polypyrimidine tract-bi 98.9 1.7E-09 5.7E-14 97.9 6.3 72 341-417 33-108 (119)
326 2cpx_A Hypothetical protein FL 98.9 1.5E-09 5.1E-14 95.4 5.8 73 341-416 27-105 (115)
327 2dnq_A RNA-binding protein 4B; 98.9 2.8E-09 9.6E-14 89.9 7.2 69 341-416 10-80 (90)
328 2e5j_A Methenyltetrahydrofolat 98.9 1.3E-09 4.4E-14 93.4 5.2 60 349-415 33-93 (97)
329 2jvo_A Nucleolar protein 3; nu 98.9 2.2E-09 7.6E-14 94.5 6.8 67 342-415 34-102 (108)
330 1rk8_A CG8781-PA, CG8781-PA pr 98.9 2.2E-09 7.4E-14 101.1 7.0 75 341-415 74-151 (165)
331 1jmt_A Splicing factor U2AF 35 98.9 1.3E-09 4.6E-14 95.7 5.2 51 363-413 52-103 (104)
332 2cpj_A Non-POU domain-containi 98.9 2.9E-09 1E-13 91.3 6.8 71 341-416 17-89 (99)
333 1wex_A Hypothetical protein (r 98.9 2.6E-09 9E-14 94.0 6.6 72 341-417 17-92 (104)
334 1x4g_A Nucleolysin TIAR; struc 98.9 2.6E-09 8.8E-14 93.4 6.4 71 341-416 27-99 (109)
335 2ytc_A PRE-mRNA-splicing facto 98.9 3E-09 1E-13 88.4 6.3 68 341-413 14-84 (85)
336 2xnq_A Nuclear polyadenylated 98.9 3.3E-09 1.1E-13 91.4 6.7 56 350-415 38-94 (97)
337 1why_A Hypothetical protein ri 98.8 3.1E-09 1.1E-13 90.8 6.4 70 341-415 19-92 (97)
338 2e5g_A U6 snRNA-specific termi 98.8 2.7E-09 9.3E-14 90.8 6.0 71 342-416 11-82 (94)
339 3v4m_A Splicing factor U2AF 65 98.8 4.1E-09 1.4E-13 92.8 7.0 73 347-419 23-100 (105)
340 2dnp_A RNA-binding protein 14; 98.8 4.1E-09 1.4E-13 88.8 6.7 69 341-416 11-81 (90)
341 2dnl_A Cytoplasmic polyadenyla 98.8 3E-09 1E-13 94.1 6.1 71 341-413 10-85 (114)
342 1x4d_A Matrin 3; structural ge 98.8 3.5E-09 1.2E-13 93.1 6.5 70 341-415 17-91 (102)
343 3tht_A Alkylated DNA repair pr 98.8 4.6E-09 1.6E-13 111.1 8.1 62 437-511 17-81 (345)
344 2dgu_A Heterogeneous nuclear r 98.8 6.3E-09 2.1E-13 90.0 6.8 68 342-416 14-83 (103)
345 2i2y_A Fusion protein consists 98.8 3.4E-09 1.2E-13 97.8 5.5 74 325-415 73-147 (150)
346 3egn_A RNA-binding protein 40; 98.8 2.4E-09 8.3E-14 98.0 4.3 73 341-415 47-129 (143)
347 2cpd_A Apobec-1 stimulating pr 98.8 3.1E-08 1.1E-12 84.9 10.9 59 350-416 30-89 (99)
348 2cqh_A IGF-II mRNA-binding pro 98.8 3E-09 1E-13 90.1 4.1 66 343-416 12-83 (93)
349 1whx_A Hypothetical protein ri 98.8 3.7E-09 1.3E-13 93.4 4.7 71 341-416 12-84 (111)
350 2dgt_A RNA-binding protein 30; 98.8 1.2E-08 4E-13 86.4 7.5 69 341-416 12-82 (92)
351 3d2w_A TAR DNA-binding protein 98.8 3.4E-09 1.2E-13 90.1 4.1 70 341-415 13-83 (89)
352 3beg_B Splicing factor, argini 98.8 3.9E-09 1.3E-13 93.7 4.1 69 341-415 18-93 (115)
353 1x5p_A Negative elongation fac 98.8 2.6E-08 8.8E-13 85.2 9.1 73 324-416 14-87 (97)
354 1wf1_A RNA-binding protein RAL 98.7 7.4E-09 2.5E-13 90.6 5.6 67 342-415 30-99 (110)
355 2kvi_A Nuclear polyadenylated 98.7 5.3E-09 1.8E-13 89.4 4.4 68 341-415 12-82 (96)
356 2e44_A Insulin-like growth fac 98.7 7.9E-09 2.7E-13 87.8 5.4 72 342-416 18-92 (96)
357 1x4f_A Matrin 3; structural ge 98.7 4.3E-08 1.5E-12 87.7 10.2 71 341-416 27-102 (112)
358 2j8a_A Histone-lysine N-methyl 98.7 5.5E-09 1.9E-13 96.0 3.5 68 345-415 16-95 (136)
359 2cq2_A Hypothetical protein LO 98.7 1.3E-08 4.4E-13 91.5 5.7 72 342-418 28-108 (114)
360 1sjr_A Polypyrimidine tract-bi 98.7 1.5E-08 5E-13 96.7 6.4 73 341-416 48-124 (164)
361 3ue2_A Poly(U)-binding-splicin 98.7 9.6E-09 3.3E-13 92.6 4.6 70 350-419 36-112 (118)
362 3pgw_S U1-70K; protein-RNA com 98.7 1.3E-08 4.4E-13 110.8 6.4 75 341-415 104-181 (437)
363 1wf0_A TDP-43, TAR DNA-binding 98.7 6.3E-09 2.2E-13 87.3 3.1 71 341-416 7-78 (88)
364 2bz2_A Negative elongation fac 98.6 6.3E-08 2.1E-12 87.1 8.5 73 324-416 38-111 (121)
365 3zzy_A Polypyrimidine tract-bi 98.6 3.3E-08 1.1E-12 90.8 6.2 73 340-416 29-106 (130)
366 2dit_A HIV TAT specific factor 98.6 1E-07 3.4E-12 84.1 8.7 63 350-415 37-101 (112)
367 2e5i_A Heterogeneous nuclear r 98.6 5.6E-08 1.9E-12 88.5 7.1 72 340-416 26-102 (124)
368 1owx_A Lupus LA protein, SS-B, 98.6 1.3E-07 4.3E-12 85.9 9.1 82 437-531 17-103 (121)
369 3s6e_A RNA-binding protein 39; 98.6 6.2E-08 2.1E-12 86.8 6.9 70 348-420 26-97 (114)
370 2d9o_A DNAJ (HSP40) homolog, s 98.5 3.5E-07 1.2E-11 80.0 7.8 63 346-416 28-90 (100)
371 3dxb_A Thioredoxin N-terminall 98.4 3E-07 1E-11 90.0 8.0 70 450-527 141-216 (222)
372 2dnr_A Synaptojanin-1; RRM dom 98.4 4.5E-07 1.5E-11 78.3 7.6 71 438-523 7-85 (91)
373 3u1l_A PRE-mRNA-splicing facto 98.4 2.9E-07 1E-11 92.7 7.1 83 324-416 133-229 (240)
374 2diu_A KIAA0430 protein; struc 98.4 3.3E-07 1.1E-11 79.8 5.7 36 380-415 47-83 (96)
375 1ufw_A Synaptojanin 2; RNP dom 98.2 1.1E-06 3.7E-11 76.4 5.7 70 437-521 14-92 (95)
376 3dxb_A Thioredoxin N-terminall 98.1 3.4E-06 1.2E-10 82.4 6.0 67 350-419 144-216 (222)
377 3tht_A Alkylated DNA repair pr 97.9 1.2E-05 4E-10 85.1 7.6 50 346-403 31-81 (345)
378 1ufw_A Synaptojanin 2; RNP dom 97.9 1.5E-05 5.3E-10 69.1 6.8 53 351-413 40-92 (95)
379 2dnr_A Synaptojanin-1; RRM dom 97.8 2.4E-05 8.3E-10 67.4 6.4 56 350-415 30-85 (91)
380 2l9w_A U4/U6 snRNA-associated- 97.5 0.0003 1E-08 62.6 8.1 78 437-529 20-103 (117)
381 1owx_A Lupus LA protein, SS-B, 97.3 0.00018 6.3E-09 65.1 5.2 74 337-415 16-95 (121)
382 2dhx_A Poly (ADP-ribose) polym 97.1 0.0015 5.2E-08 57.4 8.2 71 438-521 8-81 (104)
383 2dhx_A Poly (ADP-ribose) polym 97.1 0.00071 2.4E-08 59.5 5.7 90 335-451 4-99 (104)
384 3p3d_A Nucleoporin 53; structu 96.1 0.014 4.7E-07 53.5 7.5 89 439-532 8-107 (132)
385 1wwh_A Nucleoporin 35, nucleop 96.0 0.029 9.9E-07 50.5 9.3 77 437-527 23-100 (119)
386 1whv_A Poly(A)-specific ribonu 95.1 0.054 1.9E-06 47.2 7.2 54 437-506 15-68 (100)
387 1wwh_A Nucleoporin 35, nucleop 94.8 0.051 1.7E-06 48.9 6.5 74 338-416 23-97 (119)
388 2l9w_A U4/U6 snRNA-associated- 93.6 0.21 7.1E-06 44.5 7.8 61 347-412 33-96 (117)
389 1uw4_A UPF3X; nonsense mediate 93.2 0.28 9.5E-06 42.1 7.9 64 440-511 3-70 (91)
390 3ctr_A Poly(A)-specific ribonu 93.2 0.071 2.4E-06 46.5 4.1 53 438-506 6-58 (101)
391 1wey_A Calcipressin 1; structu 90.6 0.44 1.5E-05 41.9 6.1 71 439-522 6-82 (104)
392 3p3d_A Nucleoporin 53; structu 90.5 0.16 5.4E-06 46.5 3.3 40 380-419 63-102 (132)
393 3pq1_A Poly(A) RNA polymerase; 84.5 0.66 2.3E-05 50.7 4.3 62 437-511 52-113 (464)
394 2l08_A Regulator of nonsense t 80.9 1.3 4.3E-05 38.5 3.8 65 439-511 10-78 (97)
395 1whv_A Poly(A)-specific ribonu 55.6 9 0.00031 33.3 3.6 29 577-606 15-43 (100)
396 1wey_A Calcipressin 1; structu 54.5 26 0.00088 30.6 6.3 57 351-415 26-83 (104)
397 3ctr_A Poly(A)-specific ribonu 53.2 7.6 0.00026 33.8 2.7 30 577-607 5-34 (101)
398 3d45_A Poly(A)-specific ribonu 51.9 28 0.00095 38.2 7.7 53 437-505 439-491 (507)
399 1uw4_A UPF3X; nonsense mediate 49.8 9.1 0.00031 32.5 2.7 27 579-605 2-28 (91)
400 4e8u_A Putative uncharacterize 39.6 48 0.0017 31.4 6.2 57 441-507 15-83 (172)
401 3h0g_A DNA-directed RNA polyme 38.9 6.4 0.00022 49.5 0.0 22 60-81 1336-1367(1752)
402 2l08_A Regulator of nonsense t 33.0 21 0.00072 30.8 2.3 26 579-604 10-35 (97)
403 3pq1_A Poly(A) RNA polymerase; 31.3 29 0.00097 37.9 3.5 49 345-400 62-110 (464)
404 1twf_A B220, DNA-directed RNA 29.6 11 0.00038 47.4 0.0 11 80-90 1379-1389(1733)
405 1twf_A B220, DNA-directed RNA 26.3 14 0.00048 46.5 0.0 6 160-165 1574-1579(1733)
406 3j21_T 50S ribosomal protein L 24.1 1.1E+02 0.0037 25.7 5.1 51 446-504 30-80 (86)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.2e-30 Score=265.60 Aligned_cols=201 Identities=16% Similarity=0.062 Sum_probs=156.8
Q ss_pred ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccch
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDF 418 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~ 418 (612)
.+|+|+|||.+.++++|+++|.. +.+.+|+|+.+.+| ++|||||+|.+.++|++||++++..++|+.|.|..+.
T Consensus 42 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~---- 116 (292)
T 2ghp_A 42 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT---- 116 (292)
T ss_dssp CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC----
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC----
Confidence 34556666666555555555544 45889999998876 5899999999999999999999999999999996542
Q ss_pred hhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHH
Q psy16116 419 INVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEE 498 (612)
Q Consensus 419 ~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~e 498 (612)
..+|||+|||+++++++|+++|+.||+ .+..|+++.+..|+++|||||+|.+.+
T Consensus 117 -------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~-------~i~~v~i~~~~~~~~~g~afV~f~~~~ 170 (292)
T 2ghp_A 117 -------------------ECTLWMTNFPPSYTQRNIRDLLQDINV-------VALSIRLPSLRFNTSRRFAYIDVTSKE 170 (292)
T ss_dssp -------------------SCEEEEECCCTTCCHHHHHHHHHHTTC-------CCCEEECC-------CCEEEEECSSHH
T ss_pred -------------------CCEEEEECCCCCCCHHHHHHHHHHhCC-------CeEEEEEEeCCCCCcceEEEEEECCHH
Confidence 246999999999999999999999993 346799998888999999999999999
Q ss_pred HHHHHHH-hCCcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCc
Q psy16116 499 EADKALS-KHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTR 577 (612)
Q Consensus 499 dA~kAL~-~~~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~ 577 (612)
+|.+|++ +++..++||.|.|..+....... +.. .....
T Consensus 171 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~-------------~~~----------------------------~~~~~ 209 (292)
T 2ghp_A 171 DARYCVEKLNGLKIEGYTLVTKVSNPLEKSK-------------RTD----------------------------SATLE 209 (292)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCC--------------------------------------------------CCT
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCCcccc-------------ccc----------------------------ccCCC
Confidence 9999998 89999999999998876332110 000 00124
Q ss_pred ccEEEEcCCCcc-CCHHHHHHhhccCCcEeEeeCCC
Q psy16116 578 KDCIRLRGLPYE-ALCILMDIFFVGQQDSFVHKVPK 612 (612)
Q Consensus 578 ~~~VfVrNLPf~-vTeeDLkefFs~~gdI~~~kip~ 612 (612)
.++|||+|||++ +|+++|+++|+.||.|..+++++
T Consensus 210 ~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~ 245 (292)
T 2ghp_A 210 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPA 245 (292)
T ss_dssp TTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCS
T ss_pred CceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEe
Confidence 578999999999 99999999999999999888864
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=7.5e-30 Score=258.82 Aligned_cols=192 Identities=14% Similarity=0.184 Sum_probs=159.0
Q ss_pred ccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccch
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDF 418 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~ 418 (612)
.+|+|+|||.+.++++|+++|...++.++.+ |+++|||||+|.+.++|++|++ +++..++|+.|.|..+.
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~Gi~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 23 RKILIRGLPGDVTNQEVHDLLSDYELKYCFV-----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTSCEEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCEEEEE-----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 3556777777777777777777655767766 6789999999999999999996 79999999999996532
Q ss_pred hhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCH
Q psy16116 419 INVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKE 497 (612)
Q Consensus 419 ~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~ 497 (612)
...+|||+|||+++++++|+++|+.|| .+..++++.+. +|+++|||||+|.+.
T Consensus 94 ------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G--------~i~~~~i~~~~~~g~~~g~afV~f~~~ 147 (284)
T 3smz_A 94 ------------------TDALLCVANLPPSLTQQQFEELVRPFG--------SLERCFLVYSERTGQSKGYGFAEYMKK 147 (284)
T ss_dssp ------------------CSCEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ------------------CCCEEEEcCCCCcCCHHHHHHHHHhcC--------CeeEEEEEeeCCCCccceEEEEEECCH
Confidence 124699999999999999999999999 45679998886 899999999999999
Q ss_pred HHHHHHH-HhCCcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCC
Q psy16116 498 EEADKAL-SKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGT 576 (612)
Q Consensus 498 edA~kAL-~~~~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~ 576 (612)
++|.+|+ .+++..++||.|.|..+..... . . ...
T Consensus 148 ~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~----------~------~-----------------------------~~~ 182 (284)
T 3smz_A 148 DSAARAKSDLLGKPLGPRTLYVHWTDAGQL----------T------P-----------------------------ALL 182 (284)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCGGGC----------C------T-----------------------------TTT
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEECCCCCC----------C------c-----------------------------ccC
Confidence 9999999 5899999999999988754210 0 0 012
Q ss_pred cccEEEEcCCCccC-CHHHHHHhhccCCcEeEeeCC
Q psy16116 577 RKDCIRLRGLPYEA-LCILMDIFFVGQQDSFVHKVP 611 (612)
Q Consensus 577 ~~~~VfVrNLPf~v-TeeDLkefFs~~gdI~~~kip 611 (612)
...+|||+|||+++ |++||+++|+.||.|..++|+
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~ 218 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLA 218 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEE
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEE
Confidence 34689999999995 999999999999988776653
No 3
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=9.5e-28 Score=228.78 Aligned_cols=168 Identities=17% Similarity=0.214 Sum_probs=132.2
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccch
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDF 418 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~ 418 (612)
+|+|+|||++.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++||+.++..++|+.|.|..+.....
T Consensus 15 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~ 94 (196)
T 1l3k_A 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRED 94 (196)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC---
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCccc
Confidence 4445566655555555555544 458899999986 48899999999999999999999999999999999987754322
Q ss_pred hhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCH
Q psy16116 419 INVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKE 497 (612)
Q Consensus 419 ~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~ 497 (612)
....+ ......+|||+|||+++++++|+++|+.|| .+..|+|+.|. +|+++|||||+|.+.
T Consensus 95 ~~~~~----------~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 95 SQRPG----------AHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--------KIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp ------------------CCSEEEEECCTTTCCHHHHHHHHTTTS--------CEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ccccc----------cCCCcceEEEeCCCCCCCHHHHHHHHhcCC--------CeEEEEEeecCCCCCccceEEEEECCH
Confidence 11000 112346899999999999999999999999 45779999986 799999999999999
Q ss_pred HHHHHHHHhCCcccCCEEEEEEecchHHH
Q psy16116 498 EEADKALSKHKESIGIRYIELFRSTTAEV 526 (612)
Q Consensus 498 edA~kAL~~~~~~iggR~IeV~~as~~e~ 526 (612)
++|.+||+.++..++||.|+|..+..++.
T Consensus 157 ~~A~~A~~~~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 157 DSVDKIVIQKYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp HHHHHHHHCSCCEETTEECEEEECC----
T ss_pred HHHHHHHHhCCcEECCEEEEEEecCChhH
Confidence 99999999899999999999999876553
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.1e-27 Score=217.47 Aligned_cols=159 Identities=13% Similarity=0.172 Sum_probs=131.3
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHH-HhCCCccCceEEEEeccCccchh
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMAL-KRHKHHIDKRYIEVTKANGEDFI 419 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL-~~ng~~IggR~IeV~~s~~~e~~ 419 (612)
++|+|||.+.++++|+++|.. +.+.+|+++.+++|+++|||||+|.+.++|++|+ .+++..++|+.|.|..+......
T Consensus 3 l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~ 82 (166)
T 3md3_A 3 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQS 82 (166)
T ss_dssp EEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCC
T ss_pred EEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCC
Confidence 445555555555555554443 3588999999999999999999999999999999 58999999999999776543110
Q ss_pred hccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHH
Q psy16116 420 NVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEE 498 (612)
Q Consensus 420 ~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~e 498 (612)
......+|||+|||+++++++|+++|+.|| .+..++++.+. +|+++|||||+|.+.+
T Consensus 83 --------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G--------~i~~~~i~~~~~~~~~~g~afV~f~~~~ 140 (166)
T 3md3_A 83 --------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFP--------SYLSGHVMWDMQTGSSRGYGFVSFTSQD 140 (166)
T ss_dssp --------------CCTTCEEEEEESCCTTCCHHHHHHHHTTST--------TEEEEEEEECTTTCCEEEEEEEEESCHH
T ss_pred --------------CCCCCceEEECCCCCCCCHHHHHHHHhccC--------CeeEEEEEecCCCCCcceEEEEEeCCHH
Confidence 112356899999999999999999999999 45679999885 7999999999999999
Q ss_pred HHHHHHH-hCCcccCCEEEEEEecc
Q psy16116 499 EADKALS-KHKESIGIRYIELFRST 522 (612)
Q Consensus 499 dA~kAL~-~~~~~iggR~IeV~~as 522 (612)
+|.+|++ +|+..++||.|.|..+.
T Consensus 141 ~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 141 DAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHHHhCCCccCCcEEEEEecC
Confidence 9999997 79999999999999875
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.94 E-value=8.8e-27 Score=228.38 Aligned_cols=161 Identities=17% Similarity=0.131 Sum_probs=130.2
Q ss_pred eecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchh
Q psy16116 343 LVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFI 419 (612)
Q Consensus 343 lV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~ 419 (612)
+|+|||++.++++|+++|.. +.+.+|+|++++ +|+++|||||+|.+.++|++||+ +++..++||.|++..+......
T Consensus 19 fVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~ 98 (213)
T 4f02_A 19 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSL 98 (213)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHH
T ss_pred EEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccc
Confidence 35555555555555554443 458899999986 48999999999999999999996 7899999999999766543211
Q ss_pred hccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHH
Q psy16116 420 NVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499 (612)
Q Consensus 420 ~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~ed 499 (612)
.. ....+|||+|||+++++++|+++|+.|| .+..|+|+.|. ++++|||||+|.+.++
T Consensus 99 ~~--------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G--------~i~~~~i~~d~-~~~~g~~fV~f~~~~~ 155 (213)
T 4f02_A 99 RK--------------SGVGNIFIKNLDKSIDNKALYDTFSAFG--------NILSCKVVCDE-NGSKGYGFVHFETQEA 155 (213)
T ss_dssp HH--------------HCTTEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEEET-TEEEEEEEEEESSHHH
T ss_pred cc--------------cccccceECCcccccHHHHHHHHHhhcC--------CeEEEEeeccC-CCCceEEEEEeCCHHH
Confidence 11 1235699999999999999999999999 45679999885 4589999999999999
Q ss_pred HHHHHH-hCCcccCCEEEEEEecchHHH
Q psy16116 500 ADKALS-KHKESIGIRYIELFRSTTAEV 526 (612)
Q Consensus 500 A~kAL~-~~~~~iggR~IeV~~as~~e~ 526 (612)
|++||+ +|+..|+||.|.|..+..++.
T Consensus 156 a~~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 156 AERAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred HHHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 999996 799999999999999976543
No 6
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.94 E-value=1.8e-27 Score=221.29 Aligned_cols=158 Identities=16% Similarity=0.201 Sum_probs=132.5
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccch
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDF 418 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~ 418 (612)
+++|+|||.+.++++|+++|.. +.+.+|++++++ +|+++|||||+|.+.++|++|++. ++.++|+.|.|..+.....
T Consensus 5 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~~~~ 83 (167)
T 2cjk_A 5 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIPRDE 83 (167)
T ss_dssp EEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCCHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccchhh
Confidence 4557777777666666666654 458899999885 699999999999999999999984 6789999998876654321
Q ss_pred hhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCH
Q psy16116 419 INVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKE 497 (612)
Q Consensus 419 ~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~ 497 (612)
. ....+|||+|||+++++++|+++|+.|| .+..++++.+. +|+++|||||+|.+.
T Consensus 84 ~----------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~~~i~~~~~~g~~~g~afV~f~~~ 139 (167)
T 2cjk_A 84 Q----------------DKTGKIFVGGIGPDVRPKEFEEFFSQWG--------TIIDAQLMLDKDTGQSRGFGFVTYDSA 139 (167)
T ss_dssp H----------------HHCEEEEEEEECTTCCHHHHHHHHHTTS--------CCSEEECCCSSSSSTTSEEEEEEESSH
T ss_pred c----------------cCCCeEEECCCCCCCCHHHHHHHHHhCc--------cEEEEEEEEcCCCCccceEEEEEECCH
Confidence 1 1235799999999999999999999999 45679999886 799999999999999
Q ss_pred HHHHHHHHhCCcccCCEEEEEEecch
Q psy16116 498 EEADKALSKHKESIGIRYIELFRSTT 523 (612)
Q Consensus 498 edA~kAL~~~~~~iggR~IeV~~as~ 523 (612)
++|.+|+++++..++||.|.|..+.+
T Consensus 140 ~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 140 DAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred HHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 99999999999999999999998764
No 7
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=2.4e-25 Score=225.71 Aligned_cols=152 Identities=14% Similarity=0.124 Sum_probs=127.9
Q ss_pred HHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHH-HhCCCccCceEEEEeccCccchhhccCCCCc
Q psy16116 350 SLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMAL-KRHKHHIDKRYIEVTKANGEDFINVAGGNNN 427 (612)
Q Consensus 350 ~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL-~~ng~~IggR~IeV~~s~~~e~~~~~g~~~~ 427 (612)
++++++|+.|+ .+.+|+++.++ +|+++|||||+|.+.++|.+|+ .+++..++|+.|.|..+.......
T Consensus 110 ~~l~~~f~~~G---~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~------- 179 (284)
T 3smz_A 110 QQFEELVRPFG---SLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP------- 179 (284)
T ss_dssp HHHHHHHGGGS---CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCT-------
T ss_pred HHHHHHHHhcC---CeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCc-------
Confidence 55555555554 48889988876 6999999999999999999999 589999999999998776532110
Q ss_pred chhhhccCCcccEEEEeCCCCC-CCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-
Q psy16116 428 EAQAFLTRGAQVIIRMRGLPYE-CTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS- 505 (612)
Q Consensus 428 e~~~~~~~~~~~~VfV~nLP~s-~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~- 505 (612)
......+|||+|||++ +++++|+++|+.|| .+..|+|+.+.+|+++|||||+|.+.++|.+|++
T Consensus 180 ------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G--------~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~ 245 (284)
T 3smz_A 180 ------ALLHSRCLCVDRLPPGFNDVDALCRALSAVH--------SPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQ 245 (284)
T ss_dssp ------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSS--------CCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHH
T ss_pred ------ccCCccEEEEecCCcccCCHHHHHHHhhCCC--------CeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHH
Confidence 1123468999999999 59999999999999 4567999999999999999999999999999997
Q ss_pred hCCcccCCEEEEEEecchHH
Q psy16116 506 KHKESIGIRYIELFRSTTAE 525 (612)
Q Consensus 506 ~~~~~iggR~IeV~~as~~e 525 (612)
+|+..++||.|.|..+..++
T Consensus 246 l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 246 ADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp HTTCEETTEECEEEECCSSS
T ss_pred hCCCccCCeEEEEEEecCCC
Confidence 79999999999999996544
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=1.8e-26 Score=223.16 Aligned_cols=169 Identities=18% Similarity=0.197 Sum_probs=131.4
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED 417 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e 417 (612)
+|+|+|||.+.++++|+++|.. +.+.+|++++++ +|+++|||||+|.+.++|++||+ +++..|+|+.|.|..+....
T Consensus 30 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~ 109 (216)
T 2qfj_A 30 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIG 109 (216)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCG
T ss_pred EEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCcc
Confidence 3445666665555555555544 458899998886 68999999999999999999998 89999999999997665432
Q ss_pred hhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCC
Q psy16116 418 FINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEK 496 (612)
Q Consensus 418 ~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s 496 (612)
..... ............+|||+|||++++++||+++|+.|| .+..|+|+.+. +|+++|||||+|.+
T Consensus 110 ~~~~~-----~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G--------~v~~v~i~~~~~~g~~~g~afV~F~~ 176 (216)
T 2qfj_A 110 QAQPI-----IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG--------KIKSATLARDPTTGKHKGYGFIEYEK 176 (216)
T ss_dssp GGHHH-----HHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSS--------CEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred ccchh-----hhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccC--------CeeEEEEEecCCCCCcCceEEEEecC
Confidence 21100 000000123457899999999999999999999999 45779999986 79999999999999
Q ss_pred HHHHHHHHH-hCCcccCCEEEEEEecc
Q psy16116 497 EEEADKALS-KHKESIGIRYIELFRST 522 (612)
Q Consensus 497 ~edA~kAL~-~~~~~iggR~IeV~~as 522 (612)
.++|.+|++ +|+..|+||.|.|..+.
T Consensus 177 ~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 177 AQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp HHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred HHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 999999997 79999999999998865
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.94 E-value=6.5e-26 Score=209.61 Aligned_cols=156 Identities=17% Similarity=0.174 Sum_probs=128.8
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED 417 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e 417 (612)
+++|+|||.+.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++|++ +++..++|+.|.|..+....
T Consensus 4 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 83 (167)
T 1fxl_A 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 83 (167)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Confidence 4456666666555555555544 458899999987 79999999999999999999997 89999999999997765421
Q ss_pred hhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCC
Q psy16116 418 FINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEK 496 (612)
Q Consensus 418 ~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s 496 (612)
. .....+|||+|||+++++++|+++|+.|| .+..++++.+. +|+++|||||+|.+
T Consensus 84 ~----------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G--------~i~~~~i~~~~~~g~~~g~afV~f~~ 139 (167)
T 1fxl_A 84 A----------------SIRDANLYVSGLPKTMTQKELEQLFSQYG--------RIITSRILVDQVTGVSRGVGFIRFDK 139 (167)
T ss_dssp G----------------GGTTCEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred c----------------cCCCCcEEECCCCCcCCHHHHHHHHHhcC--------CEeEEEEEecCCCCCccceEEEEeCC
Confidence 1 01235799999999999999999999999 45679999887 89999999999999
Q ss_pred HHHHHHHHH-hCCcccCCEE--EEEEe
Q psy16116 497 EEEADKALS-KHKESIGIRY--IELFR 520 (612)
Q Consensus 497 ~edA~kAL~-~~~~~iggR~--IeV~~ 520 (612)
.++|.+|++ +|+..++||. |.|..
T Consensus 140 ~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 140 RIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp HHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred HHHHHHHHHHhcCCccCCCccceEEEe
Confidence 999999997 7999999986 66654
No 10
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=1.7e-25 Score=227.73 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=120.7
Q ss_pred HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhhccCCCCcc
Q psy16116 350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFINVAGGNNNE 428 (612)
Q Consensus 350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~~~g~~~~e 428 (612)
+++.++|+.|+. .+.+|+++.++.|+++|||||+|.+.++|++|++ +++..++|+.|.|..+..........
T Consensus 132 ~~l~~~f~~~G~--~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~----- 204 (292)
T 2ghp_A 132 RNIRDLLQDINV--VALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTD----- 204 (292)
T ss_dssp HHHHHHHHHTTC--CCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC------------
T ss_pred HHHHHHHHHhCC--CeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccccccc-----
Confidence 555566655551 4789999999889999999999999999999998 89999999999998775432211100
Q ss_pred hhhhccCCcccEEEEeCCCCC-CCHHHHHHHHhcCCCCccccccCceeEEEeeCCC--CCceeEEEEEeCCHHHHHHHHH
Q psy16116 429 AQAFLTRGAQVIIRMRGLPYE-CTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPD--GKATGDAFVLFEKEEEADKALS 505 (612)
Q Consensus 429 ~~~~~~~~~~~~VfV~nLP~s-~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~--GrskG~AFV~F~s~edA~kAL~ 505 (612)
.......+|||+|||++ +++++|+++|+.|| .+..|+|+.+.+ |+++|||||+|.+.++|.+|+.
T Consensus 205 ----~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G--------~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~ 272 (292)
T 2ghp_A 205 ----SATLEGREIMIRNLSTELLDENLLRESFEGFG--------SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQ 272 (292)
T ss_dssp ------CCTTTEEEEEEECTTTCCHHHHHHHHGGGS--------CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGG
T ss_pred ----ccCCCCceEEEECCCcccCCHHHHHHHHhccC--------CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHH
Confidence 01124578999999999 99999999999999 456799998887 9999999999999999999997
Q ss_pred hCCcccCCEEEEEEecch
Q psy16116 506 KHKESIGIRYIELFRSTT 523 (612)
Q Consensus 506 ~~~~~iggR~IeV~~as~ 523 (612)
+|+..|+||.|.|..+.+
T Consensus 273 l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 273 MNRSLLGNREISVSLADK 290 (292)
T ss_dssp GTTEEETTEEEEEEECCC
T ss_pred hcCCEECCcEEEEEEecC
Confidence 799999999999998864
No 11
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.93 E-value=6.4e-26 Score=210.63 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=129.7
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED 417 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e 417 (612)
+++|+|||.+.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++|++ +++..++|+.|.|..+....
T Consensus 5 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 84 (168)
T 1b7f_A 5 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGG 84 (168)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCc
Confidence 4446666665555555555544 458899998885 68999999999999999999997 89999999999997765421
Q ss_pred hhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCC
Q psy16116 418 FINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEK 496 (612)
Q Consensus 418 ~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s 496 (612)
. .....+|||+|||+++++++|+++|+.|| .+..++++.+. +|+++|||||+|.+
T Consensus 85 ~----------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G--------~i~~~~i~~~~~~~~~~g~afV~f~~ 140 (168)
T 1b7f_A 85 E----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYG--------SIVQKNILRDKLTGRPRGVAFVRYNK 140 (168)
T ss_dssp S----------------TTTTCEEEEESCCTTCCHHHHHHHHTSSS--------CEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred c----------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCC--------cEEEEEEEEcCCCCCcceEEEEEECC
Confidence 1 11346799999999999999999999999 45779999987 89999999999999
Q ss_pred HHHHHHHHH-hCCcccCC--EEEEEEec
Q psy16116 497 EEEADKALS-KHKESIGI--RYIELFRS 521 (612)
Q Consensus 497 ~edA~kAL~-~~~~~igg--R~IeV~~a 521 (612)
.++|.+|++ +|+..++| |.|+|..+
T Consensus 141 ~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 141 REEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999997 79999977 99998764
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.93 E-value=1.4e-25 Score=209.34 Aligned_cols=159 Identities=15% Similarity=0.134 Sum_probs=125.1
Q ss_pred ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCC---CCcceEEEEeCCHHHHHHHHH-hCCCccC---ceEEEEe
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFG---RRNGEAIVRFIDQEHRDMALK-RHKHHID---KRYIEVT 411 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~G---rsrG~AFVeF~S~EdA~kAL~-~ng~~Ig---gR~IeV~ 411 (612)
.+++|+|||++.++++|+++|.. +.+.+|++++++.+ +++|||||+|.+.++|++|++ +++..+. ++.+.+.
T Consensus 4 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~ 83 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK 83 (175)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEc
Confidence 34556666666666666655554 45889999998876 799999999999999999997 7776654 4556664
Q ss_pred ccCccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEE
Q psy16116 412 KANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAF 491 (612)
Q Consensus 412 ~s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AF 491 (612)
.+..... ......+|||+|||+++++++|+++|+.|| .+..|+++.+.+|+++||||
T Consensus 84 ~~~~~~~---------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G--------~i~~v~~~~~~~g~~~g~af 140 (175)
T 3nmr_A 84 PADSEKN---------------NAVEDRKLFIGMISKKCTENDIRVMFSSFG--------QIEECRILRGPDGLSRGCAF 140 (175)
T ss_dssp ECGGGCC---------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTSCEEEEEE
T ss_pred ccccccc---------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCC--------CEEEEEEEECCCCCEEEEEE
Confidence 4432210 011346799999999999999999999999 45789999999999999999
Q ss_pred EEeCCHHHHHHHHH-hCCcccC---CEEEEEEec
Q psy16116 492 VLFEKEEEADKALS-KHKESIG---IRYIELFRS 521 (612)
Q Consensus 492 V~F~s~edA~kAL~-~~~~~ig---gR~IeV~~a 521 (612)
|+|.+.++|.+|++ +|+..+. +|.|.|..+
T Consensus 141 V~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 141 VTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp EEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred EEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 99999999999995 7887665 499999875
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=3.3e-26 Score=215.00 Aligned_cols=145 Identities=23% Similarity=0.292 Sum_probs=118.6
Q ss_pred HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchhhccCCCCcch
Q psy16116 350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNNEA 429 (612)
Q Consensus 350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~~~~g~~~~e~ 429 (612)
++++++|+.||.. .++.+....+|+++|||||+|.+.++|++||++++..++||.|.|..+...+..
T Consensus 28 ~~l~~~f~~~g~~---~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~---------- 94 (175)
T 1fje_B 28 AELKVAISELFAK---NDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSK---------- 94 (175)
T ss_dssp HHHHHHHHHHHHH---HTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCS----------
T ss_pred HHHHHHHHHhCCc---ceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCcccc----------
Confidence 5566666677653 233344445789999999999999999999999999999999999877643110
Q ss_pred hhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCC
Q psy16116 430 QAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHK 508 (612)
Q Consensus 430 ~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~ 508 (612)
......+|||+|||+++++++|+++|+.|| . |+++ +.+|+++|||||+|.+.++|.+|++ +|+
T Consensus 95 ----~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g----~-------v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 1fje_B 95 ----KVRAARTLLAKNLSFNITEDELKEVFEDAL----E-------IRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQG 158 (175)
T ss_dssp ----TTGGGGEEEEESCCSSCCHHHHHHHCTTCS----E-------EEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTE
T ss_pred ----ccccCCEEEEeCCCCCCCHHHHHHHHHhcC----e-------EEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 011346899999999999999999999999 2 4555 6789999999999999999999997 799
Q ss_pred cccCCEEEEEEecch
Q psy16116 509 ESIGIRYIELFRSTT 523 (612)
Q Consensus 509 ~~iggR~IeV~~as~ 523 (612)
..++||.|.|..+..
T Consensus 159 ~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 159 AEIDGRSVSLYYTGE 173 (175)
T ss_dssp EEETTEEEEEEECSS
T ss_pred CEECCeEEEEEecCC
Confidence 999999999998754
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.93 E-value=1.6e-25 Score=209.01 Aligned_cols=144 Identities=13% Similarity=0.163 Sum_probs=118.3
Q ss_pred HHHHhhHhhcccc-c-------CeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchhhc
Q psy16116 350 SLLLNTIPGYEQV-L-------GLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINV 421 (612)
Q Consensus 350 ~~~e~~fkeff~~-~-------~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~~~ 421 (612)
++++++|+.|+.. + .+.++.+ ++++|||||+|.+.++|++|+++++..++|+.|.|..+.....
T Consensus 19 ~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~--- 90 (172)
T 2g4b_A 19 EAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP--- 90 (172)
T ss_dssp HHHHHHHHHHHHHTTCCSSSSCSEEEEEE-----ETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCC---
T ss_pred HHHHHHHHHHhhhcccccCCCCceeeeEe-----cCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCC---
Confidence 5566666666432 1 3344443 5678999999999999999999899999999999976543211
Q ss_pred cCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHH
Q psy16116 422 AGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEA 500 (612)
Q Consensus 422 ~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA 500 (612)
.....+|||+|||+++++++|+++|+.|| .+..|+++.+. +|+++|||||+|.+.++|
T Consensus 91 -------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G--------~v~~v~i~~~~~~g~~~g~afV~f~~~~~A 149 (172)
T 2g4b_A 91 -------------LPGAHKLFIGGLPNYLNDDQVKELLTSFG--------PLKAFNLVKDSATGLSKGYAFCEYVDINVT 149 (172)
T ss_dssp -------------CTTTTCEEEECCCTTCCHHHHHHHHHTTS--------CEEEEEEEECTTTCSEEEEEEEEESSTTHH
T ss_pred -------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcC--------CceEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 11235699999999999999999999999 45779999996 899999999999999999
Q ss_pred HHHHH-hCCcccCCEEEEEEecc
Q psy16116 501 DKALS-KHKESIGIRYIELFRST 522 (612)
Q Consensus 501 ~kAL~-~~~~~iggR~IeV~~as 522 (612)
.+|++ +|+..++||.|.|..++
T Consensus 150 ~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 150 DQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHcCCCEECCeEEEEEeCC
Confidence 99997 79999999999998764
No 15
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.92 E-value=3.8e-25 Score=211.04 Aligned_cols=161 Identities=12% Similarity=0.145 Sum_probs=122.4
Q ss_pred HHHHhhHhhcccc-c-------CeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchhhc
Q psy16116 350 SLLLNTIPGYEQV-L-------GLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINV 421 (612)
Q Consensus 350 ~~~e~~fkeff~~-~-------~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~~~ 421 (612)
++++++|+.|+.. + .+.++. .|+++|||||+|.+.++|++||++++..|+|+.|.|..+........
T Consensus 19 ~~l~~~F~~~g~i~g~~~~~~~~v~~~~-----~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~ 93 (198)
T 2yh0_A 19 EAMMDFFNAQMRLGGLTQAPGNPVLAVQ-----INQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPG 93 (198)
T ss_dssp HHHHHHHHHHHHHHTCCSSSSCSEEEEE-----EETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCC
T ss_pred HHHHHHHHHHHhhcccccCCCCceEEeE-----ecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCC
Confidence 5666666666432 1 233333 36789999999999999999999899999999999987754321110
Q ss_pred cCCCCc-c---hhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCC
Q psy16116 422 AGGNNN-E---AQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEK 496 (612)
Q Consensus 422 ~g~~~~-e---~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s 496 (612)
...... . ...........+|||+|||+++++++|+++|+.|| .+..|+++.+. +|+++|||||+|.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G--------~v~~~~~~~~~~~~~~~g~afV~f~~ 165 (198)
T 2yh0_A 94 MSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFG--------PLKAFNLVKDSATGLSKGYAFCEYVD 165 (198)
T ss_dssp SSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBS--------CEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred CcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcC--------CccEEEEeecCCCCCcceEEEEEECC
Confidence 000000 0 00000123568899999999999999999999999 45779999986 89999999999999
Q ss_pred HHHHHHHHH-hCCcccCCEEEEEEecch
Q psy16116 497 EEEADKALS-KHKESIGIRYIELFRSTT 523 (612)
Q Consensus 497 ~edA~kAL~-~~~~~iggR~IeV~~as~ 523 (612)
.++|.+|++ +|+..++||.|.|..+..
T Consensus 166 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 166 INVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp SSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 999999997 799999999999998753
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.90 E-value=7.1e-23 Score=207.32 Aligned_cols=168 Identities=16% Similarity=0.123 Sum_probs=123.1
Q ss_pred cceecCCCHHHHHhhHh----hcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116 341 CPLVQNIWLSLLLNTIP----GYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fk----eff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~ 414 (612)
+|+|+||+++.++++|+ ++|.. +.+.+|++++ +|+++|||||+|.+.++|++||+ +|+..|+||.|.|..+.
T Consensus 11 ~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 88 (282)
T 3pgw_A 11 TIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 88 (282)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEec
Confidence 34455555555444433 55554 4578888765 78899999999999999999994 89999999999997664
Q ss_pred ccch--hhccCCCCc-------------c----------------------h----------------------------
Q psy16116 415 GEDF--INVAGGNNN-------------E----------------------A---------------------------- 429 (612)
Q Consensus 415 ~~e~--~~~~g~~~~-------------e----------------------~---------------------------- 429 (612)
.... .+..+.... + .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~ 168 (282)
T 3pgw_A 89 TDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPG 168 (282)
T ss_pred cCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCC
Confidence 3221 000000000 0 0
Q ss_pred ------------------------------hhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEe
Q psy16116 430 ------------------------------QAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFV 479 (612)
Q Consensus 430 ------------------------------~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~ 479 (612)
..........+|||+|||+++++++|+++|+.|| .+..|+|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G--------~i~~v~~~ 240 (282)
T 3pgw_A 169 MIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFP--------GFKEVRLV 240 (282)
T ss_pred CCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcC--------CeEEEEEe
Confidence 0000112457899999999999999999999999 45678888
Q ss_pred eCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccC-CEEEEEEecc
Q psy16116 480 KKPDGKATGDAFVLFEKEEEADKALS-KHKESIG-IRYIELFRST 522 (612)
Q Consensus 480 ~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~ig-gR~IeV~~as 522 (612)
.++ +|||||+|.+.++|.+|++ +|+..++ ||.|.|..+.
T Consensus 241 ~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 543 6899999999999999997 7999999 9999998764
No 17
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.89 E-value=5.1e-23 Score=207.87 Aligned_cols=149 Identities=17% Similarity=0.123 Sum_probs=125.2
Q ss_pred ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED 417 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e 417 (612)
.+|+|+|||++.++++|+++|.. +.+.+|++. +++|||||+|.+.++|++|+. +++..|+|+.|.|..+..
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~-- 95 (261)
T 3sde_A 23 CRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN-----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH-- 95 (261)
T ss_dssp GEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC--
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe-----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc--
Confidence 34556777776666666666654 457888884 468999999999999999997 899999999999976642
Q ss_pred hhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCH
Q psy16116 418 FINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKE 497 (612)
Q Consensus 418 ~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~ 497 (612)
..+|||+|||+++++++|+++|+.|| .+..|.|+.|.+|+++|||||+|.+.
T Consensus 96 --------------------~~~l~v~nl~~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~g~~~g~afV~f~~~ 147 (261)
T 3sde_A 96 --------------------GAALTVKNLSPVVSNELLEQAFSQFG--------PVEKAVVVVDDRGRATGKGFVEFAAK 147 (261)
T ss_dssp --------------------SSEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEEETTSCEEEEEEEEESSH
T ss_pred --------------------CCcccccCCCCCCCHHHHHHHHHhcC--------CeEEEEeeeCCCCCcCcEEEEEeCCH
Confidence 24699999999999999999999999 45779999999999999999999999
Q ss_pred HHHHHHHH-h-CCcccC---CEEEEEEecch
Q psy16116 498 EEADKALS-K-HKESIG---IRYIELFRSTT 523 (612)
Q Consensus 498 edA~kAL~-~-~~~~ig---gR~IeV~~as~ 523 (612)
++|.+||+ + ++..+. +|.|.|..+..
T Consensus 148 ~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 148 PPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp HHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred HHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 99999997 4 666665 89999998764
No 18
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.89 E-value=5.9e-23 Score=201.73 Aligned_cols=163 Identities=11% Similarity=0.122 Sum_probs=118.0
Q ss_pred cceecCCC-HHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116 341 CPLVQNIW-LSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED 417 (612)
Q Consensus 341 ~vlV~nLp-~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e 417 (612)
+++|+||+ ++.++++|+++|.. +.+.+|+++++ ++|||||+|.+.++|++|++ +|+..+.||.|.|..+....
T Consensus 6 ~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 6 VLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp EEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 44566666 55555555554443 45889998764 47999999999999999997 89999999999998775432
Q ss_pred hhhc-----cCCCC--c-----chhhhc---------cCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeE
Q psy16116 418 FINV-----AGGNN--N-----EAQAFL---------TRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGV 476 (612)
Q Consensus 418 ~~~~-----~g~~~--~-----e~~~~~---------~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I 476 (612)
.... ..+.. . ....+. ......+|||+|||++++|++|+++|+.|| .| ...+|
T Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G----~v--~~~~v 155 (205)
T 3tyt_A 82 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELG----VK--RPTSV 155 (205)
T ss_dssp CCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHT----CC--CCSEE
T ss_pred cCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcC----Cc--ceEEE
Confidence 1000 00000 0 000000 012456899999999999999999999999 33 12678
Q ss_pred EEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 477 LFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 477 ~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
++..+. |+++|||||+|.+.++|.+||. +|+..|+|+
T Consensus 156 ~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 156 KVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp EECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred EEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 887765 6677999999999999999996 799999887
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.87 E-value=1e-21 Score=194.41 Aligned_cols=156 Identities=17% Similarity=0.241 Sum_probs=116.5
Q ss_pred HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhhccCC----
Q psy16116 350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFINVAGG---- 424 (612)
Q Consensus 350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~~~g~---- 424 (612)
++++++|+.|+ .+.+|++++++ +|||||+|.+.++|++|++ +++..++|+.|.|..+...........
T Consensus 50 ~~L~~~F~~~G---~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~ 122 (229)
T 2adc_A 50 QSLFILFGVYG---DVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQ 122 (229)
T ss_dssp HHHHHHHHHHT---CEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTT
T ss_pred HHHHHHHHhCC---CeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCcccccccc
Confidence 55555555554 48899998764 7899999999999999997 899999999999987654311100000
Q ss_pred --------CCc------chhhh-ccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeE
Q psy16116 425 --------NNN------EAQAF-LTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGD 489 (612)
Q Consensus 425 --------~~~------e~~~~-~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~ 489 (612)
... ..... .......+|||+|||+++++++|+++|+.||. .+..|+++.+ ++||
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~-------~i~~v~i~~~----~~g~ 191 (229)
T 2adc_A 123 GLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG-------VVKGFKFFQK----DRKM 191 (229)
T ss_dssp TTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSC-------CEEEEEECSS----STTC
T ss_pred ccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCC-------CeeEEEEEEC----CCcE
Confidence 000 00000 00124688999999999999999999999993 2456777542 4789
Q ss_pred EEEEeCCHHHHHHHHH-hCCcccC-CEEEEEEecch
Q psy16116 490 AFVLFEKEEEADKALS-KHKESIG-IRYIELFRSTT 523 (612)
Q Consensus 490 AFV~F~s~edA~kAL~-~~~~~ig-gR~IeV~~as~ 523 (612)
|||+|.+.++|.+|++ +|+..++ ||.|.|..+..
T Consensus 192 afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 192 ALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp EEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred EEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 9999999999999997 7999999 99999988753
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.86 E-value=5.2e-22 Score=190.52 Aligned_cols=167 Identities=17% Similarity=0.212 Sum_probs=120.1
Q ss_pred cceecCCCH-HHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116 341 CPLVQNIWL-SLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED 417 (612)
Q Consensus 341 ~vlV~nLp~-~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e 417 (612)
+++|+|||. +.++++|+++|.. +.+.+|+++.++ +|||||+|.+.++|++|++ +++..++|+.|.|..+....
T Consensus 5 ~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 5 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp EEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 344555555 4444444444433 347888887764 7899999999999999997 89999999999997765431
Q ss_pred hhhccCC-C-Cc--------chhhhc---------cCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEE
Q psy16116 418 FINVAGG-N-NN--------EAQAFL---------TRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLF 478 (612)
Q Consensus 418 ~~~~~g~-~-~~--------e~~~~~---------~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i 478 (612)
....... . .. ....+. ......+|||+|||+++++++|+++|+.||. .+..|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-------~v~~v~i 153 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG-------VVKGFKF 153 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTS-------CCCEEEE
T ss_pred cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCC-------CceEEEE
Confidence 1100000 0 00 000000 0124688999999999999999999999993 2456787
Q ss_pred eeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccC-CEEEEEEecc
Q psy16116 479 VKKPDGKATGDAFVLFEKEEEADKALS-KHKESIG-IRYIELFRST 522 (612)
Q Consensus 479 ~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~ig-gR~IeV~~as 522 (612)
..+ .+|+|||+|.+.++|.+|++ +|+..++ ||.|.|..+.
T Consensus 154 ~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 154 FQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp SST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred EeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 543 37999999999999999997 7999999 9999998865
No 21
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.86 E-value=2.5e-21 Score=184.29 Aligned_cols=125 Identities=19% Similarity=0.233 Sum_probs=103.8
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~ 515 (612)
..++|||+|||+++++++|+++|+.|| .+..|.|+.+. +|+++|||||+|.+.++|++||+.++..++||.
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 83 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWG--------TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV 83 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC--------CEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEE
Confidence 457899999999999999999999999 45679999986 699999999999999999999999999999999
Q ss_pred EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116 516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM 595 (612)
Q Consensus 516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL 595 (612)
|.|..+...+... .+ . ......+|||+|||+++|+++|
T Consensus 84 l~v~~~~~~~~~~-------~~------~-----------------------------~~~~~~~l~V~nLp~~~t~~~l 121 (196)
T 1l3k_A 84 VEPKRAVSREDSQ-------RP------G-----------------------------AHLTVKKIFVGGIKEDTEEHHL 121 (196)
T ss_dssp CEEEECCC-----------------------------------------------------CCSEEEEECCTTTCCHHHH
T ss_pred eeeecccCccccc-------cc------c-----------------------------cCCCcceEEEeCCCCCCCHHHH
Confidence 9999875432110 00 0 0113468999999999999999
Q ss_pred HHhhccCCcEeEeeCC
Q psy16116 596 DIFFVGQQDSFVHKVP 611 (612)
Q Consensus 596 kefFs~~gdI~~~kip 611 (612)
+++|+.||+|..++++
T Consensus 122 ~~~F~~~G~i~~v~i~ 137 (196)
T 1l3k_A 122 RDYFEQYGKIEVIEIM 137 (196)
T ss_dssp HHHHTTTSCEEEEEEE
T ss_pred HHHHhcCCCeEEEEEe
Confidence 9999999998877664
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=1e-20 Score=176.50 Aligned_cols=143 Identities=15% Similarity=0.219 Sum_probs=104.7
Q ss_pred eEEEeeCCCCCCcceEEEEeCCHHHHHHHHHh-CCC-ccCceEEEEeccCccchhhccCCCCcchhhhccCCcccEEEEe
Q psy16116 367 GVALCLSAFGRRNGEAIVRFIDQEHRDMALKR-HKH-HIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMR 444 (612)
Q Consensus 367 ~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~-ng~-~IggR~IeV~~s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~ 444 (612)
.++|+++.. +++|||||+|.+.++|++|++. ++. .+++.. .+................ ..........+|||+
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~v~ 76 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEW-TYDDATKTFTVTEGSHHH---HHHMDVEGMTSLKVD 76 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEE-EEETTTTEEEEECCCCCS---SCCCCCCBCCEEEEE
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcc-cccCcccccccccccccc---ccccCCCCCCEEEEe
Confidence 456777654 7899999999999999999963 433 344433 332221111000000000 000011245789999
Q ss_pred CCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecc
Q psy16116 445 GLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRST 522 (612)
Q Consensus 445 nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as 522 (612)
|||+++++++|+++|+.|| .+..|+|+.|. +|+++|||||+|.+.++|++||+ +|+..++||.|.|..+.
T Consensus 77 nl~~~~~~~~l~~~F~~~G--------~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 77 NLTYRTSPDTLRRVFEKYG--------RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp SCCTTCCHHHHHHHHHHHS--------CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHhcC--------CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 9999999999999999999 45679999886 79999999999999999999996 79999999999999875
No 23
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.84 E-value=1.4e-20 Score=184.32 Aligned_cols=121 Identities=14% Similarity=0.124 Sum_probs=102.9
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+++||++|+++|+.|| .+.+|+|++|. +|+++|||||+|.+.++|++||+ +++..++||
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G--------~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~ 85 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAG--------PILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 85 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhC--------CEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCc
Confidence 346899999999999999999999999 45679999987 79999999999999999999996 699999999
Q ss_pred EEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHH
Q psy16116 515 YIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCIL 594 (612)
Q Consensus 515 ~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeD 594 (612)
.|.|..+....... .....+|||+|||+++|+++
T Consensus 86 ~i~~~~~~~~~~~~----------------------------------------------~~~~~~l~v~nl~~~~t~~~ 119 (213)
T 4f02_A 86 PVRIMWSQRDPSLR----------------------------------------------KSGVGNIFIKNLDKSIDNKA 119 (213)
T ss_dssp ECEEEECCCCTHHH----------------------------------------------HHCTTEEEEESCCTTCCHHH
T ss_pred cccccccccccccc----------------------------------------------ccccccceECCcccccHHHH
Confidence 99987754221110 00235799999999999999
Q ss_pred HHHhhccCCcEeEeeCC
Q psy16116 595 MDIFFVGQQDSFVHKVP 611 (612)
Q Consensus 595 LkefFs~~gdI~~~kip 611 (612)
|+++|+.||+|..++|+
T Consensus 120 l~~~F~~~G~i~~~~i~ 136 (213)
T 4f02_A 120 LYDTFSAFGNILSCKVV 136 (213)
T ss_dssp HHHHHGGGSCEEEEEEE
T ss_pred HHHHHhhcCCeEEEEee
Confidence 99999999999888764
No 24
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.83 E-value=1.4e-20 Score=174.67 Aligned_cols=117 Identities=17% Similarity=0.267 Sum_probs=101.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYI 516 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I 516 (612)
.++|||+|||+++|+++|+++|+.|| .+.+|+++.+. +|+++|||||+|.+.++|++||+. ++.++||.|
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i 73 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYG--------TVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVI 73 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTC--------CEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCC--------CEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEc
Confidence 46899999999999999999999999 45679999886 799999999999999999999984 678999999
Q ss_pred EEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHHH
Q psy16116 517 ELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMD 596 (612)
Q Consensus 517 eV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDLk 596 (612)
.|..+...... ....+|||+|||+++|+++|+
T Consensus 74 ~v~~~~~~~~~------------------------------------------------~~~~~l~V~nlp~~~t~~~l~ 105 (167)
T 2cjk_A 74 DPKRAIPRDEQ------------------------------------------------DKTGKIFVGGIGPDVRPKEFE 105 (167)
T ss_dssp CCEECCCHHHH------------------------------------------------HHCEEEEEEEECTTCCHHHHH
T ss_pred ccccccchhhc------------------------------------------------cCCCeEEECCCCCCCCHHHHH
Confidence 98876543211 023579999999999999999
Q ss_pred HhhccCCcEeEeeCC
Q psy16116 597 IFFVGQQDSFVHKVP 611 (612)
Q Consensus 597 efFs~~gdI~~~kip 611 (612)
++|+.||+|..++++
T Consensus 106 ~~F~~~G~i~~~~i~ 120 (167)
T 2cjk_A 106 EFFSQWGTIIDAQLM 120 (167)
T ss_dssp HHHHTTSCCSEEECC
T ss_pred HHHHhCccEEEEEEE
Confidence 999999999887775
No 25
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.9e-20 Score=170.59 Aligned_cols=119 Identities=14% Similarity=0.140 Sum_probs=101.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCcccCCEEEE
Q psy16116 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL-SKHKESIGIRYIE 517 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL-~~~~~~iggR~Ie 517 (612)
++|||+|||+++++++|+++|+.|| .+.+|+++.+++|+++|||||+|.+.++|++|+ .+++..++||.|.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G--------~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 72 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGG--------PIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVK 72 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGS--------CEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcC--------CeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeE
Confidence 3699999999999999999999999 457799999999999999999999999999999 5899999999999
Q ss_pred EEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHHHH
Q psy16116 518 LFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDI 597 (612)
Q Consensus 518 V~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDLke 597 (612)
|..+.... . . ......+|||+|||+++|+++|++
T Consensus 73 v~~~~~~~-----------~------~-----------------------------~~~~~~~l~v~nl~~~~t~~~l~~ 106 (166)
T 3md3_A 73 INWAFQSQ-----------Q------S-----------------------------SSDDTFNLFVGDLNVNVDDETLRN 106 (166)
T ss_dssp EEECCCCC-----------C------C-----------------------------CCTTCEEEEEESCCTTCCHHHHHH
T ss_pred EEEcCCCC-----------C------C-----------------------------CCCCCceEEECCCCCCCCHHHHHH
Confidence 98753210 0 0 012356899999999999999999
Q ss_pred hhccCCcEeEeeCC
Q psy16116 598 FFVGQQDSFVHKVP 611 (612)
Q Consensus 598 fFs~~gdI~~~kip 611 (612)
+|+.||+|..++++
T Consensus 107 ~f~~~G~i~~~~i~ 120 (166)
T 3md3_A 107 AFKDFPSYLSGHVM 120 (166)
T ss_dssp HHTTSTTEEEEEEE
T ss_pred HHhccCCeeEEEEE
Confidence 99999998877663
No 26
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.82 E-value=3.5e-20 Score=171.06 Aligned_cols=118 Identities=16% Similarity=0.244 Sum_probs=101.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
.++|||+|||+++++++|+++|+.|| .+..|+++.+. +|+++|||||+|.+.++|++|++ +++..++||.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G--------~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 73 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIG--------EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 73 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcC--------CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCce
Confidence 36799999999999999999999999 45679999987 89999999999999999999997 7999999999
Q ss_pred EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116 516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM 595 (612)
Q Consensus 516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL 595 (612)
|.|..+.... . .....+|||+|||+++|+++|
T Consensus 74 l~v~~~~~~~------------------~------------------------------~~~~~~l~v~nl~~~~t~~~l 105 (167)
T 1fxl_A 74 IKVSYARPSS------------------A------------------------------SIRDANLYVSGLPKTMTQKEL 105 (167)
T ss_dssp CEEEECCCCC------------------G------------------------------GGTTCEEEEESCCTTCCHHHH
T ss_pred EEEEecCCCc------------------c------------------------------cCCCCcEEECCCCCcCCHHHH
Confidence 9997654110 0 012357999999999999999
Q ss_pred HHhhccCCcEeEeeCC
Q psy16116 596 DIFFVGQQDSFVHKVP 611 (612)
Q Consensus 596 kefFs~~gdI~~~kip 611 (612)
+++|+.||+|..++++
T Consensus 106 ~~~f~~~G~i~~~~i~ 121 (167)
T 1fxl_A 106 EQLFSQYGRIITSRIL 121 (167)
T ss_dssp HHHHGGGSCEEEEEEE
T ss_pred HHHHHhcCCEeEEEEE
Confidence 9999999988776653
No 27
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.82 E-value=3.9e-20 Score=171.51 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=102.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
.++|||+|||+++++++|+++|+.|| .+..|+++.+. +|+++|||||+|.+.++|++|++ +++..++||.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 74 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIG--------PINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKR 74 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTS--------CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcC--------CeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcE
Confidence 46899999999999999999999999 45679998886 79999999999999999999996 7999999999
Q ss_pred EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116 516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM 595 (612)
Q Consensus 516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL 595 (612)
|.|..+.... . .....+|||+|||+++|+++|
T Consensus 75 l~v~~~~~~~------------------~------------------------------~~~~~~l~v~nl~~~~t~~~l 106 (168)
T 1b7f_A 75 LKVSYARPGG------------------E------------------------------SIKDTNLYVTNLPRTITDDQL 106 (168)
T ss_dssp CEEEECCCCS------------------S------------------------------TTTTCEEEEESCCTTCCHHHH
T ss_pred EEEEecCCCc------------------c------------------------------cCCCCCEEEeCCCCCCCHHHH
Confidence 9998754110 0 013468999999999999999
Q ss_pred HHhhccCCcEeEeeCC
Q psy16116 596 DIFFVGQQDSFVHKVP 611 (612)
Q Consensus 596 kefFs~~gdI~~~kip 611 (612)
+++|+.||+|..++++
T Consensus 107 ~~~f~~~G~i~~~~i~ 122 (168)
T 1b7f_A 107 DTIFGKYGSIVQKNIL 122 (168)
T ss_dssp HHHHTSSSCEEEEEEE
T ss_pred HHhhhcCCcEEEEEEE
Confidence 9999999998777654
No 28
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.1e-20 Score=168.40 Aligned_cols=101 Identities=58% Similarity=0.933 Sum_probs=88.9
Q ss_pred hhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcc
Q psy16116 431 AFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKES 510 (612)
Q Consensus 431 ~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~ 510 (612)
.+..+....+|||+||||++|++||++||++|| .|.+.++.|+|++|.+|+++|||||+|.+.++|++||++|++.
T Consensus 16 ~~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~g----~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~ 91 (123)
T 2dha_A 16 QFLSKENQVIVRMRGLPFTATAEEVVAFFGQHC----PITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDL 91 (123)
T ss_dssp HHHHCCSCCEEEECSCCTTCCHHHHHHHHHTTS----CCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEE
T ss_pred hhccCCCCCEEEEeCCCCCCCHHHHHHHHHhhC----CccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCe
Confidence 344455678999999999999999999999998 3421246799999999999999999999999999999999999
Q ss_pred cCCEEEEEEecchHHHHHHhhhhcC
Q psy16116 511 IGIRYIELFRSTTAEVQQVLNKTME 535 (612)
Q Consensus 511 iggR~IeV~~as~~e~~~~~~~~~~ 535 (612)
|+||+|+|..++.+++.+.+.+...
T Consensus 92 l~gR~i~V~~a~~~e~~~~~~~~~~ 116 (123)
T 2dha_A 92 LGKRYIELFRSTAAEVQQVLNRFSS 116 (123)
T ss_dssp SSSCEECCEEECHHHHHHHHHHHTT
T ss_pred eCCeEEEEEECCHHHHHHHHHhccC
Confidence 9999999999999999998887653
No 29
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.81 E-value=2.5e-20 Score=180.05 Aligned_cols=129 Identities=16% Similarity=0.086 Sum_probs=102.0
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.+. +|+++|||||+|.+.++|++||+ +++..++||
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 98 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFG--------PIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR 98 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGS--------CEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCC--------CEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCe
Confidence 357899999999999999999999999 45679999887 89999999999999999999997 899999999
Q ss_pred EEEEEecchHHHHHHh-hhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHH
Q psy16116 515 YIELFRSTTAEVQQVL-NKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCI 593 (612)
Q Consensus 515 ~IeV~~as~~e~~~~~-~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTee 593 (612)
.|.|..+......... .... .......+|||+|||+++|++
T Consensus 99 ~l~v~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~l~v~nlp~~~t~~ 140 (216)
T 2qfj_A 99 NIKVGRPSNIGQAQPIIDQLA--------------------------------------EEARAFNRIYVASVHQDLSDD 140 (216)
T ss_dssp CCEEECCSCCGGGHHHHHHHH--------------------------------------HHHTTSCEEEEECCCTTCCHH
T ss_pred eEEEecCCCccccchhhhhhh--------------------------------------cccCCCcEEEEeCCCCcCCHH
Confidence 9999776432211000 0000 001234689999999999999
Q ss_pred HHHHhhccCCcEeEeeCC
Q psy16116 594 LMDIFFVGQQDSFVHKVP 611 (612)
Q Consensus 594 DLkefFs~~gdI~~~kip 611 (612)
||+++|+.||.|..++|+
T Consensus 141 ~l~~~f~~~G~v~~v~i~ 158 (216)
T 2qfj_A 141 DIKSVFEAFGKIKSATLA 158 (216)
T ss_dssp HHHHHHTTSSCEEEEEEE
T ss_pred HHHHHHhccCCeeEEEEE
Confidence 999999999988877764
No 30
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.80 E-value=1.9e-19 Score=167.59 Aligned_cols=119 Identities=11% Similarity=0.117 Sum_probs=97.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCC---CceeEEEEEeCCHHHHHHHHH-hCCcccC-
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDG---KATGDAFVLFEKEEEADKALS-KHKESIG- 512 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~G---rskG~AFV~F~s~edA~kAL~-~~~~~ig- 512 (612)
.++|||+|||+++++++|+++|+.|| .+.+|+|+.+..+ +++|||||+|.+.++|++|++ +++..+.
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 74 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYG--------AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLP 74 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTS--------CEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCT
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCC--------CEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEcc
Confidence 46899999999999999999999999 4567999998855 899999999999999999996 6876654
Q ss_pred --CEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccC
Q psy16116 513 --IRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEA 590 (612)
Q Consensus 513 --gR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~v 590 (612)
++.+.+..+.... . ......+|||+|||+++
T Consensus 75 ~~~~~~~~~~~~~~~-----------~------------------------------------~~~~~~~l~v~nl~~~~ 107 (175)
T 3nmr_A 75 GMHHPIQMKPADSEK-----------N------------------------------------NAVEDRKLFIGMISKKC 107 (175)
T ss_dssp TCSSCCEEEECGGGC-----------C------------------------------------SCGGGSEEEEESCCTTC
T ss_pred CCccceEEccccccc-----------c------------------------------------ccCCCCeEEEcCCCCcC
Confidence 4556665432110 0 01134689999999999
Q ss_pred CHHHHHHhhccCCcEeEeeCC
Q psy16116 591 LCILMDIFFVGQQDSFVHKVP 611 (612)
Q Consensus 591 TeeDLkefFs~~gdI~~~kip 611 (612)
|+++|+++|+.||+|..++++
T Consensus 108 t~~~l~~~F~~~G~i~~v~~~ 128 (175)
T 3nmr_A 108 TENDIRVMFSSFGQIEECRIL 128 (175)
T ss_dssp CHHHHHHHHGGGSCEEEEEEE
T ss_pred CHHHHHHHHHhCCCEEEEEEE
Confidence 999999999999998877764
No 31
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.79 E-value=1.4e-19 Score=169.83 Aligned_cols=118 Identities=12% Similarity=0.049 Sum_probs=98.1
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI 516 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I 516 (612)
..++|||+|||+++++++|+++|+.+| .| .++.+....+|+++|||||+|.+.++|++||++++..++||.|
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g----~~----~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 83 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVAISELF----AK----NDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEI 83 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHH----HH----HTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhC----Cc----ceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEE
Confidence 567899999999999999999999999 33 2333433457899999999999999999999999999999999
Q ss_pred EEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHHH
Q psy16116 517 ELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMD 596 (612)
Q Consensus 517 eV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDLk 596 (612)
.|..+..++ . . ......+|||+|||+++|+++|+
T Consensus 84 ~v~~~~~~~-----------~------~-----------------------------~~~~~~~l~v~nlp~~~t~~~l~ 117 (175)
T 1fje_B 84 KLEKPKGRD-----------S------K-----------------------------KVRAARTLLAKNLSFNITEDELK 117 (175)
T ss_dssp EEECCCCSS-----------C------S-----------------------------TTGGGGEEEEESCCSSCCHHHHH
T ss_pred EEecCCCcc-----------c------c-----------------------------ccccCCEEEEeCCCCCCCHHHHH
Confidence 998754210 0 0 01135689999999999999999
Q ss_pred HhhccCCcEeEe
Q psy16116 597 IFFVGQQDSFVH 608 (612)
Q Consensus 597 efFs~~gdI~~~ 608 (612)
++|+.||+|.++
T Consensus 118 ~~F~~~g~v~~~ 129 (175)
T 1fje_B 118 EVFEDALEIRLV 129 (175)
T ss_dssp HHCTTCSEEEEE
T ss_pred HHHHhcCeEEEe
Confidence 999999999876
No 32
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=3.6e-19 Score=158.77 Aligned_cols=75 Identities=23% Similarity=0.184 Sum_probs=68.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEE
Q psy16116 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIE 517 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~Ie 517 (612)
.+|||+|||+++++++|+++|+.|| .+.+|+|+.|. ++++|||||+|.+.++|++||+ +++..|+||.|.
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G--------~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~ 76 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFG--------NILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 76 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CEEEECCCCCCCCHHHHHHHHhccC--------CEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 5699999999999999999999999 45679999886 4589999999999999999996 799999999999
Q ss_pred EEecc
Q psy16116 518 LFRST 522 (612)
Q Consensus 518 V~~as 522 (612)
|..+.
T Consensus 77 V~~a~ 81 (115)
T 4f25_A 77 VGRFK 81 (115)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 98764
No 33
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.77 E-value=1.1e-19 Score=173.18 Aligned_cols=142 Identities=15% Similarity=0.140 Sum_probs=97.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCc--eeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGE--EGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRY 515 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v--~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~ 515 (612)
.++|||+|||+++++++|+++|+.|| .|.+-. ..-.|.....++++|||||+|.+.++|++||++|+..++||.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g----~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~ 79 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQM----RLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 79 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHH----HHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHH----hhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCce
Confidence 46899999999999999999999995 221100 000122222467899999999999999999988999999999
Q ss_pred EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116 516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM 595 (612)
Q Consensus 516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL 595 (612)
|.|..+..... . .. . .+.. . ...+. ... .......++|||+|||+++|+++|
T Consensus 80 i~v~~~~~~~~------~---~~--~--~~~~--~---------~~~~~--~~~--~~~~~~~~~l~v~nl~~~~~~~~l 131 (198)
T 2yh0_A 80 LKIRRPHDYQP------L---PG--M--SENP--S---------VYVPG--VVS--TVVPDSAHKLFIGGLPNYLNDDQV 131 (198)
T ss_dssp EEEECCCCCCC------C---CC--S--SSCS--S---------CCCTT--SSC--CCSSCCCCEEEEECCCTTCCHHHH
T ss_pred EEEeCCCCCCC------C---CC--C--cCCC--c---------CCCCC--Ccc--CCCCCCCCEEEEeCCCCCCCHHHH
Confidence 99987643210 0 00 0 0000 0 00000 000 001235689999999999999999
Q ss_pred HHhhccCCcEeEeeCC
Q psy16116 596 DIFFVGQQDSFVHKVP 611 (612)
Q Consensus 596 kefFs~~gdI~~~kip 611 (612)
+++|+.||+|..++++
T Consensus 132 ~~~f~~~G~v~~~~~~ 147 (198)
T 2yh0_A 132 KELLTSFGPLKAFNLV 147 (198)
T ss_dssp HHHHHTBSCEEEEEEE
T ss_pred HHHHHHcCCccEEEEe
Confidence 9999999988777654
No 34
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.77 E-value=2.9e-19 Score=166.60 Aligned_cols=117 Identities=14% Similarity=0.114 Sum_probs=93.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCcccccc-------CceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcc
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMD-------GEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKES 510 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd-------~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~ 510 (612)
.++|||+|||+++++++|+++|+.+| .|.+ .+..+. .++++|||||+|.+.++|++|+++|+..
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g----~~~g~~~~~~~~v~~~~-----~~~~~g~afV~f~~~~~A~~A~~~~~~~ 74 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQM----RLGGLTQAPGNPVLAVQ-----INQDKNFAFLEFRSVDETTQAMAFDGII 74 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHH----HHTTCCSSSSCSEEEEE-----EETTTTEEEEEESSHHHHHHHGGGTTCE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHh----hhcccccCCCCceeeeE-----ecCCCCEEEEEeCCHHHHHHHHHhCCcE
Confidence 46899999999999999999999994 2211 112233 3567899999999999999999889999
Q ss_pred cCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccC
Q psy16116 511 IGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEA 590 (612)
Q Consensus 511 iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~v 590 (612)
++||.|.|..+... . . .....+|||+|||+++
T Consensus 75 ~~g~~i~v~~~~~~----------------~--~------------------------------~~~~~~l~v~nlp~~~ 106 (172)
T 2g4b_A 75 FQGQSLKIRRPHDY----------------Q--P------------------------------LPGAHKLFIGGLPNYL 106 (172)
T ss_dssp ETTEECEEECCSSC----------------C--C------------------------------CTTTTCEEEECCCTTC
T ss_pred ecCceeeecCCccc----------------C--C------------------------------CCCCCEEEEEcCCCcC
Confidence 99999999753210 0 0 0124679999999999
Q ss_pred CHHHHHHhhccCCcEeEeeCC
Q psy16116 591 LCILMDIFFVGQQDSFVHKVP 611 (612)
Q Consensus 591 TeeDLkefFs~~gdI~~~kip 611 (612)
|++||+++|+.||+|..++++
T Consensus 107 t~~~l~~~f~~~G~v~~v~i~ 127 (172)
T 2g4b_A 107 NDDQVKELLTSFGPLKAFNLV 127 (172)
T ss_dssp CHHHHHHHHHTTSCEEEEEEE
T ss_pred CHHHHHHHHHhcCCceEEEEE
Confidence 999999999999998877664
No 35
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=1.4e-18 Score=161.16 Aligned_cols=134 Identities=13% Similarity=0.087 Sum_probs=104.3
Q ss_pred CCcceEEEEeCCHHHHHHHHH-h-CCCccCceEEEEeccCccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHH
Q psy16116 377 RRNGEAIVRFIDQEHRDMALK-R-HKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQ 454 (612)
Q Consensus 377 rsrG~AFVeF~S~EdA~kAL~-~-ng~~IggR~IeV~~s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~d 454 (612)
+.+|+++|+|.+.++|++|++ + ++..++| .|.+..+..........................+|||+|||+++++++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 568999999999999999995 6 8899999 888877654321110000000000001123567899999999999999
Q ss_pred HHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecch
Q psy16116 455 VIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTT 523 (612)
Q Consensus 455 LrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~ 523 (612)
|+++|+.|| .+..|+|+.+ ++|||||+|.+.++|++||+ +|+..++||.|.|..+..
T Consensus 90 l~~~F~~~G--------~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 90 LERAFGYYG--------PLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp HHHHHHHHS--------CEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred HHHHHHhhC--------CEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 999999999 4567898866 68999999999999999997 799999999999988753
No 36
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=3.1e-18 Score=153.73 Aligned_cols=94 Identities=38% Similarity=0.731 Sum_probs=84.1
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRY 515 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~ 515 (612)
...++|||+||||++|++||++||+.|| .+ +.+..|+|++|++|+++|||||+|.+.++|++||++|+..|+||+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G----~~-~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 89 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCT----IH-DGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRY 89 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSC----BT-TGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcC----Cc-cCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 3567899999999999999999999999 21 015679999999999999999999999999999999999999999
Q ss_pred EEEEecchHHHHHHhhhhc
Q psy16116 516 IELFRSTTAEVQQVLNKTM 534 (612)
Q Consensus 516 IeV~~as~~e~~~~~~~~~ 534 (612)
|+|..+..+++.+...+..
T Consensus 90 i~V~~a~~~~~~~~~~~~~ 108 (118)
T 2db1_A 90 IEVFKSHRTEMDWVLKHSG 108 (118)
T ss_dssp EEEEEECHHHHHHHHHTTS
T ss_pred EEEEECCHHHHHHHHHHhC
Confidence 9999999999988777554
No 37
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.76 E-value=6.1e-18 Score=171.03 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=68.2
Q ss_pred cccEEEEeCCCCCCCHHHHH----HHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCccc
Q psy16116 437 AQVIIRMRGLPYECTAKQVI----DFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL-SKHKESI 511 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLr----efF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL-~~~~~~i 511 (612)
..++|||+|||+++++++|+ ++|+.|| .+..|+++. +|+++|||||+|.+.++|++|| .+|+..+
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G--------~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFG--------QILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPF 77 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccC--------CeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCee
Confidence 45789999999999999977 8999999 345677764 7899999999999999999999 5799999
Q ss_pred CCEEEEEEecch
Q psy16116 512 GIRYIELFRSTT 523 (612)
Q Consensus 512 ggR~IeV~~as~ 523 (612)
+||.|.|..+..
T Consensus 78 ~g~~l~v~~a~~ 89 (282)
T 3pgw_A 78 YDKPMRIQYAKT 89 (282)
T ss_pred CCcEEEEEEecc
Confidence 999999998854
No 38
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=153.13 Aligned_cols=86 Identities=21% Similarity=0.387 Sum_probs=78.2
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI 516 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I 516 (612)
...+|||+||||+++++||++||+.|+ +..|+|++|++|+++|||||+|.++++|++||++|++.|+||+|
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~~---------v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 85 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGLR---------VDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYV 85 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTSC---------CCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCC---------eeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEE
Confidence 357899999999999999999999986 24699999999999999999999999999999999999999999
Q ss_pred EEEecchHHHHHHhh
Q psy16116 517 ELFRSTTAEVQQVLN 531 (612)
Q Consensus 517 eV~~as~~e~~~~~~ 531 (612)
+|..++.+++....+
T Consensus 86 ~V~~a~~~~~~~~~g 100 (109)
T 2dnn_A 86 EVSPATERQWVAAGG 100 (109)
T ss_dssp EEEECCHHHHHHHHC
T ss_pred EEEECCccchhhcCC
Confidence 999999888766443
No 39
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.75 E-value=1.4e-17 Score=164.61 Aligned_cols=149 Identities=13% Similarity=0.097 Sum_probs=102.4
Q ss_pred CcccEEEEeCCCC-CCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116 436 GAQVIIRMRGLPY-ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGI 513 (612)
Q Consensus 436 ~~~~~VfV~nLP~-s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~igg 513 (612)
....+|||+|||+ ++++++|+++|+.|| .+..|+|+.+. +|||||+|.+.++|++||+ +++..++|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G--------~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g 99 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYG--------DVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHG 99 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHT--------CEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCC--------CeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 3567899999999 999999999999999 45678988765 7899999999999999996 89999999
Q ss_pred EEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccc-cccCCCCCCCCcccccCCCcccEEEEcCCCccCCH
Q psy16116 514 RYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLS-HLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALC 592 (612)
Q Consensus 514 R~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~-~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTe 592 (612)
|.|.|..+....... ++......+ ....... ...+... ..............+|||+|||+++|+
T Consensus 100 ~~l~v~~a~~~~~~~--------~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~V~nlp~~~t~ 165 (229)
T 2adc_A 100 KPIRITLSKHQNVQL--------PREGQEDQG-----LTKDYGNSPLHRFKK-PGSKNFQNIFPPSATLHLSNIPPSVSE 165 (229)
T ss_dssp SBCEEECCSCCCCCC--------CCSSSSTTT-----TEEECTTCSSCCCCS-TTSGGGTTCCCSCSEEEEECCCTTCCH
T ss_pred eEEEEEEecCccccC--------ccccccccc-----cccccccCcccccCC-ccccccccCCCCCCEEEEeCCCccCCH
Confidence 999998875321100 000000000 0000000 0000000 000000001234689999999999999
Q ss_pred HHHHHhhccCC-cEeEeeC
Q psy16116 593 ILMDIFFVGQQ-DSFVHKV 610 (612)
Q Consensus 593 eDLkefFs~~g-dI~~~ki 610 (612)
++|+++|+.|| +|..+++
T Consensus 166 ~~l~~~f~~~G~~i~~v~i 184 (229)
T 2adc_A 166 EDLKVLFSSNGGVVKGFKF 184 (229)
T ss_dssp HHHHHHHHTTSCCEEEEEE
T ss_pred HHHHHHHHHcCCCeeEEEE
Confidence 99999999999 8887776
No 40
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=3.3e-18 Score=158.38 Aligned_cols=92 Identities=37% Similarity=0.737 Sum_probs=82.6
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI 516 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I 516 (612)
...+|||+||||++|++||++||+.|| .| +.+..|+|++|++|+++|||||+|.+.++|++||++|+..|+||+|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G----~v-~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i 117 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCT----IH-DGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 117 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCC----CS-SSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhC----Cc-CceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEE
Confidence 457899999999999999999999999 21 0146799999999999999999999999999999999999999999
Q ss_pred EEEecchHHHHHHhhhh
Q psy16116 517 ELFRSTTAEVQQVLNKT 533 (612)
Q Consensus 517 eV~~as~~e~~~~~~~~ 533 (612)
+|..++.+++.+.+++.
T Consensus 118 ~V~~a~~~e~~~~~~~~ 134 (136)
T 2hgl_A 118 EVFKSHRTEMDWVLKHS 134 (136)
T ss_dssp EEEECCHHHHHHHHTTS
T ss_pred EEEECChHHHHHHHhhc
Confidence 99999999998877643
No 41
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.74 E-value=5.1e-18 Score=166.52 Aligned_cols=147 Identities=14% Similarity=0.099 Sum_probs=99.1
Q ss_pred cccEEEEeCCC-CCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLP-YECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP-~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
.+.+|||+||| +++++++|+++|+.|| .+.+|+|+.+ ++|||||+|.+.++|++||+ +|+..++||
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G--------~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 70 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYG--------NVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQ 70 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTS--------CEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcC--------CeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 35689999999 8999999999999999 4567888754 47999999999999999996 899999999
Q ss_pred EEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCc----ccccCCCcccEEEEcCCCccC
Q psy16116 515 YIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQ----HIITSGTRKDCIRLRGLPYEA 590 (612)
Q Consensus 515 ~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~----~~~~~~~~~~~VfVrNLPf~v 590 (612)
.|.|..+..+... ++... ..+..+.+ .......+...+.. ..........+|||+|||+++
T Consensus 71 ~l~v~~s~~~~~~---------p~~~~-~~~~~~~~-----~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~ 135 (205)
T 3tyt_A 71 KMNVCVSKQPAIM---------PGQSY-GLEDGSCS-----YKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEV 135 (205)
T ss_dssp ECEEEECSCSCCC---------CCSCC-BCTTSCBS-----EEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTC
T ss_pred eEEEEEccCCccC---------CCccc-ccccCCcc-----ccccCCCccccccCcccccccccCCCcceEEEeCCCCCC
Confidence 9999987533210 00000 00000000 00000000000000 000001245689999999999
Q ss_pred CHHHHHHhhccCCcE--eEeeC
Q psy16116 591 LCILMDIFFVGQQDS--FVHKV 610 (612)
Q Consensus 591 TeeDLkefFs~~gdI--~~~ki 610 (612)
|++||+++|+.||.| ..+++
T Consensus 136 t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 136 TEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp CHHHHHHHHHHHTCCCCSEEEE
T ss_pred CHHHHHHHHHhcCCcceEEEEE
Confidence 999999999999987 44443
No 42
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=159.69 Aligned_cols=147 Identities=14% Similarity=0.143 Sum_probs=100.3
Q ss_pred ccEEEEeCCCC-CCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 438 QVIIRMRGLPY-ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 438 ~~~VfV~nLP~-s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
+.+|||+|||+ ++++++|+++|+.|| .+..|+++.+. +|||||+|.+.++|++|++ +++..++||.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G--------~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYG--------DVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKP 70 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTC--------CCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcC--------CEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence 36799999999 999999999999999 34568888664 7899999999999999997 8999999999
Q ss_pred EEEEecchHHHHHHhhhhcCCCCCCCCCCCC-CCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHH
Q psy16116 516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSN-NGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCIL 594 (612)
Q Consensus 516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~-~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeD 594 (612)
|.|..+...... .++......+. .+.+. ....+.. .+. ............+|||+|||+++|+++
T Consensus 71 l~v~~a~~~~~~--------~~~~~~~~~~~~~~~~~--~~~~r~~-~~~---~~~~~~~~~~~~~l~v~nl~~~~~~~~ 136 (198)
T 1qm9_A 71 IRITLSKHQNVQ--------LPREGQEDQGLTKDYGN--SPLHRFK-KPG---SKNFQNIFPPSATLHLSNIPPSVSEED 136 (198)
T ss_dssp CEEEECCCCSCC--------CSSSSSSSSSCEEESSC--CCTTSSS-SCC---CCCCSCCCCCCCEEEECCCCTTCCHHH
T ss_pred EEEEEecCCCcC--------CCCcCCccccccccccC--Cchhhcc-Ccc---ccccccCCCCccEEEEeCCCCCCCHHH
Confidence 999987543210 00000000000 00000 0000000 000 000000123468999999999999999
Q ss_pred HHHhhccCC-cEeEeeC
Q psy16116 595 MDIFFVGQQ-DSFVHKV 610 (612)
Q Consensus 595 LkefFs~~g-dI~~~ki 610 (612)
|+++|+.|| .|..+++
T Consensus 137 l~~~f~~~G~~v~~v~i 153 (198)
T 1qm9_A 137 LKVLFSSNGGVVKGFKF 153 (198)
T ss_dssp HHHHHHHTTSCCCEEEE
T ss_pred HHHHHHHcCCCceEEEE
Confidence 999999999 8877665
No 43
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-18 Score=151.09 Aligned_cols=93 Identities=34% Similarity=0.703 Sum_probs=83.1
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI 516 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I 516 (612)
..++|||+||||+++++||++||+.|| .+ +++..|+|+.|++|+++|||||+|.+.++|++||++|+..|+||+|
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g----~~-~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCR----IR-NGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 84 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSC----BT-TTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcC----Cc-CCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEE
Confidence 567899999999999999999999998 21 0146799999989999999999999999999999999999999999
Q ss_pred EEEecchHHHHHHhhhhc
Q psy16116 517 ELFRSTTAEVQQVLNKTM 534 (612)
Q Consensus 517 eV~~as~~e~~~~~~~~~ 534 (612)
+|..++.+++.+.+++..
T Consensus 85 ~V~~a~~~~~~~~~~~~~ 102 (107)
T 2lmi_A 85 EVYEINNEDVDALMKSLQ 102 (107)
T ss_dssp CCEECCHHHHHHHHHTTC
T ss_pred EEEECCHHHHHHHHHhhc
Confidence 999999999888776543
No 44
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.72 E-value=1.5e-17 Score=167.68 Aligned_cols=108 Identities=16% Similarity=0.129 Sum_probs=95.0
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
..++|||+|||+++|+++|+++|+.|| .+..|.+. +++|||||+|.+.++|++|++ +|+..++||.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G--------~i~~v~i~-----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~ 87 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYG--------EPSEVFIN-----RDRGFGFIRLESRTLAEIAKAELDGTILKSRP 87 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGC--------CCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC--------CEEEEEEe-----CCCcEEEEEECCHHHHHHHHHHcCCcEECCce
Confidence 457899999999999999999999999 34567774 558999999999999999997 8999999999
Q ss_pred EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116 516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM 595 (612)
Q Consensus 516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL 595 (612)
|.|..+. ...+|||+|||+++|+++|
T Consensus 88 l~v~~a~------------------------------------------------------~~~~l~v~nl~~~~t~~~l 113 (261)
T 3sde_A 88 LRIRFAT------------------------------------------------------HGAALTVKNLSPVVSNELL 113 (261)
T ss_dssp CEEEECC------------------------------------------------------CSSEEEEESCCTTCCHHHH
T ss_pred eEeeecc------------------------------------------------------cCCcccccCCCCCCCHHHH
Confidence 9997642 1247999999999999999
Q ss_pred HHhhccCCcEeEeeCC
Q psy16116 596 DIFFVGQQDSFVHKVP 611 (612)
Q Consensus 596 kefFs~~gdI~~~kip 611 (612)
+++|+.||+|..++|+
T Consensus 114 ~~~F~~~G~i~~v~i~ 129 (261)
T 3sde_A 114 EQAFSQFGPVEKAVVV 129 (261)
T ss_dssp HHHHGGGSCEEEEEEE
T ss_pred HHHHHhcCCeEEEEee
Confidence 9999999999877764
No 45
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.8e-18 Score=148.68 Aligned_cols=83 Identities=45% Similarity=0.805 Sum_probs=74.7
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI 516 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I 516 (612)
...+|||+|||++++++||++||+.|| .| .+.|+|+.+.+|+++|||||+|.+.++|++||++|+..|+||+|
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G----~v---~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i 86 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLE----IV---PNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 86 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCC----EE---EEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC----Cc---ceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEE
Confidence 457899999999999999999999999 33 12488888989999999999999999999999889999999999
Q ss_pred EEEecchHHH
Q psy16116 517 ELFRSTTAEV 526 (612)
Q Consensus 517 eV~~as~~e~ 526 (612)
+|..++.+++
T Consensus 87 ~v~~~~~~~~ 96 (104)
T 1wg5_A 87 EIFKSSRAEV 96 (104)
T ss_dssp EEEEECTTTS
T ss_pred EEEECCHHHH
Confidence 9999887654
No 46
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.5e-17 Score=144.79 Aligned_cols=87 Identities=22% Similarity=0.384 Sum_probs=79.8
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCc-eeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGE-EGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v-~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~ 515 (612)
..++|||+|||++++++||++||+.|| .+ ..|+|+.|.+|+++|||||+|.+.++|++||++|+..|+||.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g--------~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 85 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIP--------VDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGRE 85 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSC--------CCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCC--------CcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeE
Confidence 457899999999999999999999999 23 569999999999999999999999999999988999999999
Q ss_pred EEEEecchHHHHHHhh
Q psy16116 516 IELFRSTTAEVQQVLN 531 (612)
Q Consensus 516 IeV~~as~~e~~~~~~ 531 (612)
|+|..+..+++.....
T Consensus 86 i~v~~a~~~~~~~~~~ 101 (114)
T 2cpy_A 86 AFVHVVTLEDMREIEK 101 (114)
T ss_dssp EEEEEECHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHh
Confidence 9999999988876554
No 47
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=1.5e-17 Score=152.18 Aligned_cols=84 Identities=45% Similarity=0.839 Sum_probs=76.1
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI 516 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I 516 (612)
...+|||+||||++|++||++||+.|+| + .+.|+|++|++|+++|||||+|.+.++|++||++++..|+||+|
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~~i-----~--~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I 113 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGLEI-----V--PNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYI 113 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTSCE-----E--EEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCc-----e--eeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEE
Confidence 4678999999999999999999999972 1 12789999989999999999999999999999999999999999
Q ss_pred EEEecchHHHH
Q psy16116 517 ELFRSTTAEVQ 527 (612)
Q Consensus 517 eV~~as~~e~~ 527 (612)
+|..++.+|+.
T Consensus 114 ~V~~a~~~e~~ 124 (126)
T 2hgm_A 114 EVFKSSQEEVR 124 (126)
T ss_dssp CCEEECHHHHC
T ss_pred EEEECCHHHhh
Confidence 99999988763
No 48
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.69 E-value=9.1e-17 Score=140.05 Aligned_cols=79 Identities=15% Similarity=0.251 Sum_probs=72.1
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
.+.+|||+|||+++|+++|+++|+.|| .+.+|+|+.|+ +|+++|||||+|.+.++|++|++ +|+..++||
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G--------~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr 89 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIG--------EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSK 89 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTS--------CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 346799999999999999999999999 45779999987 69999999999999999999996 799999999
Q ss_pred EEEEEecch
Q psy16116 515 YIELFRSTT 523 (612)
Q Consensus 515 ~IeV~~as~ 523 (612)
.|.|..+.+
T Consensus 90 ~l~V~~AkP 98 (99)
T 4fxv_A 90 TIKVSYARP 98 (99)
T ss_dssp ECEEEECCB
T ss_pred EEEEEEeeC
Confidence 999988753
No 49
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-17 Score=145.58 Aligned_cols=78 Identities=37% Similarity=0.601 Sum_probs=72.1
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI 516 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I 516 (612)
..++|||+||||+++++||++||+.||+ + .|+|++|++|+++|||||+|.+.++|++||++|+..|+||.|
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~--------~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNP--------M-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 84 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCC--------S-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCc--------e-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEE
Confidence 4578999999999999999999999992 2 689999999999999999999999999999999999999999
Q ss_pred EEEecch
Q psy16116 517 ELFRSTT 523 (612)
Q Consensus 517 eV~~as~ 523 (612)
+|..++.
T Consensus 85 ~V~~~~~ 91 (102)
T 1wez_A 85 ELFLNST 91 (102)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 9998763
No 50
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1e-16 Score=144.30 Aligned_cols=91 Identities=33% Similarity=0.589 Sum_probs=78.8
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRY 515 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~ 515 (612)
...++|||+|||++++++||++||+.|| .|. ..+.+..+.+|+++|||||+|.+.++|++||++|+..|+||.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G----~v~---~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 95 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLD----IVE---DSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRF 95 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSC----BCT---TTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC----Ccc---ceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence 3568999999999999999999999999 332 125556667999999999999999999999999999999999
Q ss_pred EEEEecchHHHHHHhhhh
Q psy16116 516 IELFRSTTAEVQQVLNKT 533 (612)
Q Consensus 516 IeV~~as~~e~~~~~~~~ 533 (612)
|+|..+..+++...+...
T Consensus 96 i~V~~a~~~~~~~~~~~~ 113 (124)
T 1wel_A 96 IQVHPITKKGMLEKIDMI 113 (124)
T ss_dssp BEEEEECHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHH
Confidence 999999999987655543
No 51
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.65 E-value=6.3e-16 Score=137.44 Aligned_cols=81 Identities=19% Similarity=0.113 Sum_probs=73.8
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|++|. +|+++|||||+|.+.++|++||+ +|+..++||
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G--------~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr 76 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYG--------EVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGN 76 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcC--------CeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 346899999999999999999999999 45679999997 59999999999999999999996 799999999
Q ss_pred EEEEEecchHH
Q psy16116 515 YIELFRSTTAE 525 (612)
Q Consensus 515 ~IeV~~as~~e 525 (612)
.|.|..+...+
T Consensus 77 ~i~V~~a~~~~ 87 (110)
T 3s8s_A 77 IIHAQLDIKGQ 87 (110)
T ss_dssp ECEEEECSTTH
T ss_pred EEEEEECCCCc
Confidence 99999996544
No 52
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.65 E-value=7e-16 Score=129.62 Aligned_cols=77 Identities=19% Similarity=0.361 Sum_probs=71.1
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .+..|+++.++ +|+++|||||+|.+.++|++||++++..++||.
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 81 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFG--------EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRV 81 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTS--------CEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC--------CEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEE
Confidence 457899999999999999999999999 45779999886 699999999999999999999999999999999
Q ss_pred EEEEec
Q psy16116 516 IELFRS 521 (612)
Q Consensus 516 IeV~~a 521 (612)
|+|..+
T Consensus 82 i~v~~A 87 (87)
T 3s7r_A 82 IDPKKA 87 (87)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999864
No 53
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-16 Score=136.31 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=68.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-h-CCcccCCEE
Q psy16116 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-K-HKESIGIRY 515 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~-~~~~iggR~ 515 (612)
.+|||+|||+++||+||+++|+.||. .+.+|+|++|+ +|+++|||||+|.+.++|++||+ + ++..++||.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~-------~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~ 74 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGV-------QAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQK 74 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTC-------CCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCC-------EeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEE
Confidence 57999999999999999999999992 24568898886 69999999999999999999997 4 556799999
Q ss_pred EEEEecc
Q psy16116 516 IELFRST 522 (612)
Q Consensus 516 IeV~~as 522 (612)
|.|..+.
T Consensus 75 i~V~~a~ 81 (91)
T 2lxi_A 75 VSMHYSD 81 (91)
T ss_dssp EEEECCC
T ss_pred EEEEEcC
Confidence 9998765
No 54
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7e-16 Score=130.87 Aligned_cols=78 Identities=35% Similarity=0.613 Sum_probs=71.8
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI 516 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I 516 (612)
..++|||+|||++++++||+++|+.|+ | ..|+|+.+.+|+++|||||+|.+.++|++||++|+..|+||.|
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~~-----i----~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i 79 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPLK-----P----VAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYI 79 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTSC-----C----SEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhCC-----c----eEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEE
Confidence 457899999999999999999999985 2 4689999989999999999999999999999999999999999
Q ss_pred EEEecch
Q psy16116 517 ELFRSTT 523 (612)
Q Consensus 517 eV~~as~ 523 (612)
+|..+..
T Consensus 80 ~v~~a~~ 86 (91)
T 2dgw_A 80 EVFREKS 86 (91)
T ss_dssp EEEEESS
T ss_pred EEEECCc
Confidence 9998753
No 55
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.64 E-value=2.7e-16 Score=136.72 Aligned_cols=79 Identities=14% Similarity=0.166 Sum_probs=69.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCc----cc
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKE----SI 511 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~----~i 511 (612)
-.+|||+|||+++|+++|+++|+.|| .| .+..|++++|+ +|++||||||+|.+.++|++||+ +|+. .+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G----~i--~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYA----SL--AVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTC----CC--CGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhC----Cc--cEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 35799999999999999999999999 33 35679999987 69999999999999999999996 5665 59
Q ss_pred CCEEEEEEecc
Q psy16116 512 GIRYIELFRST 522 (612)
Q Consensus 512 ggR~IeV~~as 522 (612)
+||.|.|..+.
T Consensus 83 ~Gr~i~V~~Ak 93 (95)
T 2lkz_A 83 DGKTIGVDFAK 93 (95)
T ss_dssp TTEEEEEEECC
T ss_pred CCEEEEEEEcc
Confidence 99999999874
No 56
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.8e-16 Score=136.77 Aligned_cols=79 Identities=14% Similarity=0.237 Sum_probs=72.5
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI 516 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I 516 (612)
...+|||+|||+++|+++|+++|+.|| .+.+|+|+.|.+|+++|||||+|.+.++|++||++++..++||.|
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G--------~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l 81 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKG--------QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDL 81 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSS--------CEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcC--------CEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEE
Confidence 346799999999999999999999999 456799999988999999999999999999999999999999999
Q ss_pred EEEecch
Q psy16116 517 ELFRSTT 523 (612)
Q Consensus 517 eV~~as~ 523 (612)
.|..+..
T Consensus 82 ~V~~~~~ 88 (103)
T 1s79_A 82 LILFKDD 88 (103)
T ss_dssp EEEEHHH
T ss_pred EEEEchH
Confidence 9987543
No 57
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=4.8e-17 Score=151.15 Aligned_cols=80 Identities=39% Similarity=0.599 Sum_probs=73.0
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI 516 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I 516 (612)
..++|||+||||++||+||++||+.||+ ..|+|++|++|+++|||||+|.+.++|++||++|+..|+||+|
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~Gi---------~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i 115 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLNP---------VRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYI 115 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCCC---------SEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC---------eEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEE
Confidence 4567999999999999999999999993 2589999999999999999999999999999889999999999
Q ss_pred EEEecchHH
Q psy16116 517 ELFRSTTAE 525 (612)
Q Consensus 517 eV~~as~~e 525 (612)
+|..++..+
T Consensus 116 ~V~~a~~~~ 124 (139)
T 2hgn_A 116 ELFLNSTTG 124 (139)
T ss_dssp CCEECCCSC
T ss_pred EEEECCCCC
Confidence 999887544
No 58
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=127.20 Aligned_cols=79 Identities=23% Similarity=0.212 Sum_probs=71.7
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||++++++||+++|+.|| .+..|+++.+. +|+++|||||+|.+.++|++|++ +|+..++||
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 76 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFG--------RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 76 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcC--------CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 457899999999999999999999999 45679999986 89999999999999999999997 799999999
Q ss_pred EEEEEecch
Q psy16116 515 YIELFRSTT 523 (612)
Q Consensus 515 ~IeV~~as~ 523 (612)
.|.|..+..
T Consensus 77 ~l~v~~a~~ 85 (87)
T 3bs9_A 77 QIRTNWATR 85 (87)
T ss_dssp ECEEEEEC-
T ss_pred EEEEEecCC
Confidence 999998764
No 59
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.63 E-value=1.2e-15 Score=126.80 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=71.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI 516 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I 516 (612)
++|||+|||+++++++|+++|+.|| .+..++++.+. +|+++|||||+|.+.++|++|++ +|+..++||.|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G--------~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 73 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFP--------SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 73 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTST--------TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcC--------CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 5799999999999999999999999 45679999885 79999999999999999999997 79999999999
Q ss_pred EEEecch
Q psy16116 517 ELFRSTT 523 (612)
Q Consensus 517 eV~~as~ 523 (612)
.|..+.+
T Consensus 74 ~v~~a~~ 80 (83)
T 3md1_A 74 RINWAAK 80 (83)
T ss_dssp EEEECCC
T ss_pred EEEecCc
Confidence 9998764
No 60
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=128.98 Aligned_cols=78 Identities=18% Similarity=0.185 Sum_probs=72.5
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.+.+|+++|||||+|.+.++|++|++ +|+..++||.
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G--------~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAG--------PLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC--------CEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 467899999999999999999999999 4567999999999999999999999999999997 7999999999
Q ss_pred EEEEecc
Q psy16116 516 IELFRST 522 (612)
Q Consensus 516 IeV~~as 522 (612)
|.|..+.
T Consensus 87 l~V~~a~ 93 (95)
T 2ywk_A 87 INVSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEEcC
Confidence 9998764
No 61
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.62 E-value=4.5e-16 Score=132.32 Aligned_cols=79 Identities=14% Similarity=0.134 Sum_probs=67.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI 516 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I 516 (612)
.+|||+|||+++++++|+++|+.||. + .+.+|+|+.|+ +|+++|||||+|.+.++|++||+ +|+..++||.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~----~--~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i 75 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGV----N--DILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 75 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTC----C--CCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCC----C--ceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEE
Confidence 46999999999999999999999992 1 34679999986 89999999999999999999995 89999999999
Q ss_pred EEEecch
Q psy16116 517 ELFRSTT 523 (612)
Q Consensus 517 eV~~as~ 523 (612)
.|..+..
T Consensus 76 ~V~~~~~ 82 (90)
T 3p5t_L 76 VVTPSNK 82 (90)
T ss_dssp EECCC--
T ss_pred EEEECCC
Confidence 9988754
No 62
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.61 E-value=5.1e-16 Score=126.89 Aligned_cols=73 Identities=23% Similarity=0.340 Sum_probs=68.0
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEEE
Q psy16116 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELF 519 (612)
Q Consensus 441 VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV~ 519 (612)
|||+|||+++++++|+++|+.|| .+..|+++.++ +|+++|||||+|.+.++|++|+++|+..++||.|.|.
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~ 73 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFG--------KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 73 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTS--------CCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEE
T ss_pred EEEecCCCCCCHHHHHHHHHhcC--------CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEE
Confidence 89999999999999999999999 44678998887 7999999999999999999999999999999999997
Q ss_pred ec
Q psy16116 520 RS 521 (612)
Q Consensus 520 ~a 521 (612)
.+
T Consensus 74 ~A 75 (75)
T 2mss_A 74 KA 75 (75)
T ss_dssp CC
T ss_pred eC
Confidence 54
No 63
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.61 E-value=1.2e-15 Score=128.22 Aligned_cols=77 Identities=18% Similarity=0.259 Sum_probs=71.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYI 516 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I 516 (612)
.++|||+|||+++++++|+++|+.|| .+..|+++.+. +|+++|||||+|.+.++|++|+.+|+..++||.|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l 77 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCG--------SVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI 77 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGC--------CEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCC--------CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEE
Confidence 46899999999999999999999999 45779999986 8999999999999999999999889999999999
Q ss_pred EEEecc
Q psy16116 517 ELFRST 522 (612)
Q Consensus 517 eV~~as 522 (612)
.|..+.
T Consensus 78 ~V~~a~ 83 (89)
T 3ucg_A 78 KVIPKR 83 (89)
T ss_dssp EEEETT
T ss_pred EEEEcc
Confidence 998864
No 64
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=130.82 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=72.6
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~ 515 (612)
..++|||+|||+++++++|+++|+.|| .+..|+|+.|+ +|+++|||||+|.+.++|++||++++..++||.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 80 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFG--------VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK 80 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSS--------CEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeE
Confidence 457899999999999999999999999 45679999886 699999999999999999999999999999999
Q ss_pred EEEEecch
Q psy16116 516 IELFRSTT 523 (612)
Q Consensus 516 IeV~~as~ 523 (612)
|.|..+..
T Consensus 81 l~V~~a~~ 88 (99)
T 2dgs_A 81 VEVKRAEP 88 (99)
T ss_dssp CEEEECCC
T ss_pred EEEEECCC
Confidence 99988753
No 65
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=130.00 Aligned_cols=78 Identities=24% Similarity=0.389 Sum_probs=72.3
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.+++|+++|||||+|.+.++|++|++ +|+..++||.
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHG--------TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTS--------CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC--------CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 457799999999999999999999999 4577999999999999999999999999999995 7999999999
Q ss_pred EEEEecc
Q psy16116 516 IELFRST 522 (612)
Q Consensus 516 IeV~~as 522 (612)
|.|..+.
T Consensus 88 l~v~~a~ 94 (100)
T 2do4_A 88 IKVAISN 94 (100)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9998875
No 66
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.60 E-value=4.2e-15 Score=140.16 Aligned_cols=86 Identities=15% Similarity=0.197 Sum_probs=75.7
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+++++++|+++|+.|| .| .+..|+|+.|+ +|+++|||||+|.+.++|++||+ +|+..|+||
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G----~i--~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr 127 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIG----VY--DVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGE 127 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTT----CC--CEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHC----Cc--cEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 457899999999999999999999999 22 35779999996 89999999999999999999997 599999999
Q ss_pred EEEEEecchHHHHH
Q psy16116 515 YIELFRSTTAEVQQ 528 (612)
Q Consensus 515 ~IeV~~as~~e~~~ 528 (612)
.|.|..+.++....
T Consensus 128 ~l~V~~a~~~~~~~ 141 (156)
T 3n9u_C 128 KVDVRPATRQNLSQ 141 (156)
T ss_dssp ECEEEECCHHHHHH
T ss_pred EeEEEEcCCCcchh
Confidence 99999998776544
No 67
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.6e-15 Score=129.08 Aligned_cols=79 Identities=23% Similarity=0.235 Sum_probs=72.5
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKAL-SKHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL-~~~~~~iggR 514 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.++ +|+++|||||+|.+.++|++|| .+|+..++||
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYG--------PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR 78 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTS--------CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 457899999999999999999999999 45679999887 8999999999999999999999 5899999999
Q ss_pred EEEEEecch
Q psy16116 515 YIELFRSTT 523 (612)
Q Consensus 515 ~IeV~~as~ 523 (612)
.|.|..+..
T Consensus 79 ~l~V~~a~~ 87 (99)
T 1whw_A 79 MLHVLPSTI 87 (99)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEcCC
Confidence 999998754
No 68
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.59 E-value=4.9e-15 Score=129.12 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=73.1
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
....+|||+|||+++++++|+++|+.|| .+..|+|+.+.+|+++|||||+|.+.++|++||+ +|+..++||
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 98 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFG--------TLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 98 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTS--------CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3567899999999999999999999999 4577999999999999999999999999999997 799999999
Q ss_pred EEEEEecc
Q psy16116 515 YIELFRST 522 (612)
Q Consensus 515 ~IeV~~as 522 (612)
.|.|..++
T Consensus 99 ~l~V~~a~ 106 (107)
T 3ulh_A 99 PMNIQLVT 106 (107)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEeC
Confidence 99998764
No 69
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.59 E-value=3.5e-15 Score=128.63 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=70.6
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCcee--------EEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-h
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEG--------VLFVKKP-DGKATGDAFVLFEKEEEADKALS-K 506 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~--------I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~ 506 (612)
...+|||+|||+++++++|+++|+.|| .+.. |+++.|+ +|+++|||||+|.+.++|++|++ +
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIG--------IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTS--------CBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhC--------CEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 467899999999999999999999999 3456 8999985 79999999999999999999996 7
Q ss_pred CCcccCCEEEEEEec
Q psy16116 507 HKESIGIRYIELFRS 521 (612)
Q Consensus 507 ~~~~iggR~IeV~~a 521 (612)
|+..++||.|.|..+
T Consensus 84 ~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 84 DGKEFSGNPIKVSFA 98 (99)
T ss_dssp TTCBSSSSBCEEEEC
T ss_pred CCCEeCCcEEEEEec
Confidence 999999999999876
No 70
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.8e-15 Score=125.59 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=71.6
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+++++++|+++|+.|| .+..|+++.++ +|+++|||||+|.+.++|++|++ +|+..++||
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--------~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYG--------PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTS--------CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC--------CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 467899999999999999999999999 45679999887 58999999999999999999997 799999999
Q ss_pred EEEEEecc
Q psy16116 515 YIELFRST 522 (612)
Q Consensus 515 ~IeV~~as 522 (612)
.|.|..+.
T Consensus 86 ~l~v~~a~ 93 (95)
T 2cqc_A 86 RIRVSGPS 93 (95)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 99998764
No 71
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.59 E-value=3.1e-15 Score=124.74 Aligned_cols=77 Identities=22% Similarity=0.194 Sum_probs=70.4
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeC-CCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKK-PDGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d-~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
..++|||+|||+++++++|+++|+.|| .+..|+++.+ .+|+++|||||+|.+.++|++|++ +|+..++||
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 77 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFG--------DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 77 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGS--------CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccC--------CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 457899999999999999999999999 4567999888 478999999999999999999995 799999999
Q ss_pred EEEEEec
Q psy16116 515 YIELFRS 521 (612)
Q Consensus 515 ~IeV~~a 521 (612)
.|.|..+
T Consensus 78 ~l~v~~a 84 (85)
T 3mdf_A 78 TIRVNLA 84 (85)
T ss_dssp ECEEEEC
T ss_pred EEEEEEc
Confidence 9999875
No 72
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.59 E-value=1.1e-15 Score=132.80 Aligned_cols=81 Identities=20% Similarity=0.283 Sum_probs=73.8
Q ss_pred cccEEEEeCCCC------CCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCC
Q psy16116 437 AQVIIRMRGLPY------ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHK 508 (612)
Q Consensus 437 ~~~~VfV~nLP~------s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~ 508 (612)
.+.+|||+|||+ ++++++|+++|+.|| .+.+|+|+.|+ +|+++|||||+|.+.++|++||+ +|+
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G--------~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng 76 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAG--------KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG 76 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTS--------CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcC--------CEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 357899999999 999999999999999 45679999988 49999999999999999999996 899
Q ss_pred cccCC-EEEEEEecchHH
Q psy16116 509 ESIGI-RYIELFRSTTAE 525 (612)
Q Consensus 509 ~~igg-R~IeV~~as~~e 525 (612)
..++| |.|.|..+...+
T Consensus 77 ~~~~g~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 77 KRLDLKHRLFLYTMKDVE 94 (100)
T ss_dssp CBSSSSCBCEEEESHHHH
T ss_pred cccCCCeEEEEEECchhh
Confidence 99999 999999987654
No 73
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.59 E-value=3.5e-15 Score=127.94 Aligned_cols=79 Identities=20% Similarity=0.383 Sum_probs=72.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
+.+|||+|||+++++++|+++|+.|| .+..|+|+.+. +|+++|||||+|.+.++|++|++ +|+..++||.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 73 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVG--------PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRF 73 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTS--------CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcC--------CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 36799999999999999999999999 45679999886 69999999999999999999995 7999999999
Q ss_pred EEEEecchH
Q psy16116 516 IELFRSTTA 524 (612)
Q Consensus 516 IeV~~as~~ 524 (612)
|.|..+..+
T Consensus 74 l~V~~a~~~ 82 (96)
T 2x1f_A 74 LKCGYSSNS 82 (96)
T ss_dssp CEEEECSCS
T ss_pred EEEEEcCCC
Confidence 999988654
No 74
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.1e-15 Score=127.70 Aligned_cols=79 Identities=20% Similarity=0.167 Sum_probs=71.4
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeE-EEeeC-CCCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGV-LFVKK-PDGKATGDAFVLFEKEEEADKALS-KHKESIGI 513 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I-~i~~d-~~GrskG~AFV~F~s~edA~kAL~-~~~~~igg 513 (612)
...+|||+|||+++++++|+++|+.|| .+..| +|+.| .+|+++|||||+|.+.++|++||+ +|+..++|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFG--------VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 75 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTS--------CBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 357899999999999999999999999 34568 89988 489999999999999999999998 79999999
Q ss_pred EEEEEEecch
Q psy16116 514 RYIELFRSTT 523 (612)
Q Consensus 514 R~IeV~~as~ 523 (612)
|.|.|..+..
T Consensus 76 ~~l~v~~a~~ 85 (96)
T 1x5t_A 76 RPITVSYAFK 85 (96)
T ss_dssp EECEEEESCC
T ss_pred EEEEEEEecc
Confidence 9999998753
No 75
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.58 E-value=2.5e-15 Score=128.02 Aligned_cols=78 Identities=27% Similarity=0.528 Sum_probs=68.4
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||++++++||+++|+.|| .| ..+.++.++ +|+++|||||+|.+.++|++||+ +|+..++||
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i----~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr 85 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQ----VI----PGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSC----BC----TTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC----Cc----cceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCc
Confidence 357899999999999999999999999 33 346666654 78999999999999999999997 799999999
Q ss_pred EEEEEecc
Q psy16116 515 YIELFRST 522 (612)
Q Consensus 515 ~IeV~~as 522 (612)
.|+|..++
T Consensus 86 ~l~v~~a~ 93 (95)
T 2ek1_A 86 KVKLSGPS 93 (95)
T ss_dssp ECEEECCC
T ss_pred EEEEEecc
Confidence 99998765
No 76
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=5e-15 Score=128.57 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=71.2
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCE
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIR 514 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR 514 (612)
...++|||+|||+++++++|+++|+.|| +..|+|+.+. +|+++|||||+|.+.++|++||++|+..|+||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g---------i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 83 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS---------IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDR 83 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC---------EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC---------ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCe
Confidence 3567899999999999999999999997 2568999887 69999999999999999999998899999999
Q ss_pred EEEEEecc
Q psy16116 515 YIELFRST 522 (612)
Q Consensus 515 ~IeV~~as 522 (612)
.|.|..+.
T Consensus 84 ~l~V~~a~ 91 (103)
T 2dng_A 84 SLRVDIAE 91 (103)
T ss_dssp ECEEEECC
T ss_pred EEEEEEec
Confidence 99999875
No 77
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.8e-15 Score=131.65 Aligned_cols=81 Identities=16% Similarity=0.122 Sum_probs=73.8
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~ 515 (612)
..++|||+|||+++++++|+++|+.|| .+..|+|+.|+ +|+++|||||+|.+.++|++||.+|+..|+||.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 95 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVG--------KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVP 95 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTS--------CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC--------CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeE
Confidence 357899999999999999999999999 45679999887 489999999999999999999988999999999
Q ss_pred EEEEecchHH
Q psy16116 516 IELFRSTTAE 525 (612)
Q Consensus 516 IeV~~as~~e 525 (612)
|.|..+..+.
T Consensus 96 l~V~~a~~~~ 105 (114)
T 2cq4_A 96 IIVQASQAEK 105 (114)
T ss_dssp EEEEEHHHHH
T ss_pred EEEEecCCCc
Confidence 9999986554
No 78
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.2e-15 Score=126.65 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=71.5
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+++++++|+++|+.|| .+..|+++.+. +|+++|||||+|.+.++|++|++ +|+..++||
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--------~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFG--------KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR 75 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTS--------CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--------CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 356899999999999999999999999 45679999886 69999999999999999999997 799999999
Q ss_pred EEEEEecc
Q psy16116 515 YIELFRST 522 (612)
Q Consensus 515 ~IeV~~as 522 (612)
.|.|..+.
T Consensus 76 ~l~V~~a~ 83 (95)
T 2dnz_A 76 PMRVGHVT 83 (95)
T ss_dssp CCEEEESS
T ss_pred EEEEEEcc
Confidence 99998865
No 79
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.58 E-value=8.1e-16 Score=125.53 Aligned_cols=74 Identities=20% Similarity=0.324 Sum_probs=67.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEE
Q psy16116 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYIEL 518 (612)
Q Consensus 440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV 518 (612)
+|||+|||+++++++|+++|+.+| .+..|+++.++ +|+++|||||+|.+.++|++|+++++..++||.|.|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v 72 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFG--------EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEI 72 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHS--------CCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEE
Confidence 489999999999999999999999 44678898886 689999999999999999999999999999999998
Q ss_pred Eec
Q psy16116 519 FRS 521 (612)
Q Consensus 519 ~~a 521 (612)
..+
T Consensus 73 ~~a 75 (75)
T 1iqt_A 73 KVA 75 (75)
T ss_dssp EEC
T ss_pred EEC
Confidence 764
No 80
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2.5e-15 Score=130.77 Aligned_cols=79 Identities=16% Similarity=0.221 Sum_probs=72.3
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCE
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIR 514 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR 514 (612)
....+|||+|||+++++++|+++|+.|| .+..|+|+.++ +|+++|||||+|.+.++|++||+.++..|+||
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 85 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYG--------EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGR 85 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTS--------CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCE
Confidence 3567899999999999999999999999 45679999985 79999999999999999999998899999999
Q ss_pred EEEEEecc
Q psy16116 515 YIELFRST 522 (612)
Q Consensus 515 ~IeV~~as 522 (612)
.|.|..+.
T Consensus 86 ~l~V~~a~ 93 (105)
T 2dh8_A 86 NIDPKPCT 93 (105)
T ss_dssp EEBCCCSC
T ss_pred EEEEEEcc
Confidence 99998765
No 81
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=7.1e-15 Score=129.53 Aligned_cols=79 Identities=20% Similarity=0.179 Sum_probs=72.8
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.+++|+++|||||+|.+.++|++||+ +|+..|+||.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G--------~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAG--------VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 85 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTS--------CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 457899999999999999999999999 4567999999999999999999999999999997 7999999999
Q ss_pred EEEEecch
Q psy16116 516 IELFRSTT 523 (612)
Q Consensus 516 IeV~~as~ 523 (612)
|.|..+..
T Consensus 86 l~v~~a~~ 93 (114)
T 2do0_A 86 MHVKMDER 93 (114)
T ss_dssp CEEEECSC
T ss_pred EEEEEccc
Confidence 99998753
No 82
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.57 E-value=8.3e-15 Score=129.50 Aligned_cols=80 Identities=23% Similarity=0.211 Sum_probs=73.2
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI 513 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg 513 (612)
...++|||+|||+++++++|+++|+.|| .+..|+|+.+. +|+++|||||+|.+.++|++||+ +|+..|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFG--------RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 84 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3568899999999999999999999999 45679999986 89999999999999999999996 79999999
Q ss_pred EEEEEEecch
Q psy16116 514 RYIELFRSTT 523 (612)
Q Consensus 514 R~IeV~~as~ 523 (612)
|.|.|..+..
T Consensus 85 ~~l~V~~a~~ 94 (115)
T 2dgo_A 85 RQIRTNWATR 94 (115)
T ss_dssp EECEEEESSC
T ss_pred EEEEEEEccC
Confidence 9999998753
No 83
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5e-15 Score=128.40 Aligned_cols=79 Identities=16% Similarity=0.276 Sum_probs=72.7
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI 513 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg 513 (612)
....+|||+|||+++++++|+++|+.|| .+..|+|+.++ +|+++|||||+|.+.++|++||+ +|+..|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFG--------SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH 84 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTC--------CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC--------CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 3568899999999999999999999999 45679999986 79999999999999999999997 79999999
Q ss_pred EEEEEEecc
Q psy16116 514 RYIELFRST 522 (612)
Q Consensus 514 R~IeV~~as 522 (612)
|.|.|..+.
T Consensus 85 ~~l~v~~a~ 93 (103)
T 2cq0_A 85 LILNVEWAK 93 (103)
T ss_dssp EECEEEESS
T ss_pred cEEEEEECC
Confidence 999998865
No 84
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.6e-15 Score=128.35 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=73.0
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI 513 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg 513 (612)
....+|||+|||+++++++|+++|+.|| .+..|+|+.+. +|+++|||||+|.+.++|++||+ +|+..|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAG--------PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTS--------CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 3567899999999999999999999999 45679999887 79999999999999999999997 79999999
Q ss_pred EEEEEEecch
Q psy16116 514 RYIELFRSTT 523 (612)
Q Consensus 514 R~IeV~~as~ 523 (612)
|.|.|..+..
T Consensus 85 ~~l~v~~a~~ 94 (105)
T 1x5u_A 85 KPIRVNKASA 94 (105)
T ss_dssp CBCEEEETTT
T ss_pred eEEEEEECCC
Confidence 9999998753
No 85
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=4.3e-15 Score=127.47 Aligned_cols=78 Identities=28% Similarity=0.540 Sum_probs=68.3
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeC-CCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKK-PDGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d-~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||++++++||+++|+.|| .| ..+.++.+ .+|+++|||||+|.+.++|++||+ +|+..|+||
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G----~v----~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 85 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQ----VI----PGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSC----CC----TTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC----Cc----cceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 457899999999999999999999999 33 33555555 589999999999999999999995 799999999
Q ss_pred EEEEEecc
Q psy16116 515 YIELFRST 522 (612)
Q Consensus 515 ~IeV~~as 522 (612)
.|+|..+.
T Consensus 86 ~l~V~~a~ 93 (98)
T 2cqp_A 86 KVKLVLGS 93 (98)
T ss_dssp ECEEEESS
T ss_pred EEEEEEcC
Confidence 99998865
No 86
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.57 E-value=6.3e-15 Score=128.01 Aligned_cols=79 Identities=20% Similarity=0.226 Sum_probs=72.4
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCC--
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGI-- 513 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~igg-- 513 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.+.+|+++|||||+|.+.++|++||+ +|+..+.|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~ 85 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFG--------VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGA 85 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTS--------CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 467899999999999999999999999 4577999999999999999999999999999996 79998887
Q ss_pred -EEEEEEecch
Q psy16116 514 -RYIELFRSTT 523 (612)
Q Consensus 514 -R~IeV~~as~ 523 (612)
|.|.|..+..
T Consensus 86 ~~~l~V~~a~~ 96 (105)
T 2dnh_A 86 SSSLVVKFADT 96 (105)
T ss_dssp SSCCEEEESCS
T ss_pred CccEEEEECcc
Confidence 9999988753
No 87
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.57 E-value=5.6e-15 Score=130.76 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=71.6
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.+. +|+++|||||+|.+.++|++||+ +|+..|+||
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 95 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFG--------NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK 95 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGS--------CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 457899999999999999999999999 44679999987 79999999999999999999995 799999999
Q ss_pred EEEEEecc
Q psy16116 515 YIELFRST 522 (612)
Q Consensus 515 ~IeV~~as 522 (612)
.|.|..+.
T Consensus 96 ~l~V~~a~ 103 (115)
T 2cpz_A 96 RLKVQLKR 103 (115)
T ss_dssp ECEEECCC
T ss_pred EEEEEEcC
Confidence 99998765
No 88
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.57 E-value=5e-15 Score=130.78 Aligned_cols=78 Identities=18% Similarity=0.330 Sum_probs=70.6
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~ 515 (612)
..++|||+|||+++++++|+++|+.|| .+..|+|+.+. +|+++|||||+|.+.++|++||+..+..++||.
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G--------~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~ 95 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFG--------EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT 95 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTS--------CEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccC--------CeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEE
Confidence 457899999999999999999999999 45679999887 699999999999999999999998779999999
Q ss_pred EEEEecc
Q psy16116 516 IELFRST 522 (612)
Q Consensus 516 IeV~~as 522 (612)
|.|..+.
T Consensus 96 l~V~~a~ 102 (109)
T 2rs2_A 96 IDPKVAF 102 (109)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9998875
No 89
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.57 E-value=5.7e-15 Score=131.97 Aligned_cols=79 Identities=23% Similarity=0.269 Sum_probs=72.8
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .+..|.|+.+.+|+++|||||+|.+.++|++|++ +|+..++||.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHG--------PISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSS--------CCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 457899999999999999999999999 4567999999999999999999999999999996 7999999999
Q ss_pred EEEEecch
Q psy16116 516 IELFRSTT 523 (612)
Q Consensus 516 IeV~~as~ 523 (612)
|.|..+..
T Consensus 78 l~V~~a~~ 85 (116)
T 2fy1_A 78 IKVEQAKK 85 (116)
T ss_dssp CEEEECCC
T ss_pred EEEEECCC
Confidence 99998764
No 90
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.57 E-value=5.6e-15 Score=130.59 Aligned_cols=77 Identities=22% Similarity=0.355 Sum_probs=68.8
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.+ ++++|||||+|.+.++|.+|++ +|+..++||.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 76 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYG--------PIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY 76 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTS--------CEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 457899999999999999999999999 4567888754 6679999999999999999997 8999999999
Q ss_pred EEEEecch
Q psy16116 516 IELFRSTT 523 (612)
Q Consensus 516 IeV~~as~ 523 (612)
|.|..+..
T Consensus 77 l~v~~a~~ 84 (115)
T 3lqv_A 77 LVVLYYNA 84 (115)
T ss_dssp CEEEECCH
T ss_pred EEEEEecC
Confidence 99988764
No 91
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=6.8e-15 Score=125.13 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=70.4
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+++++++|+++|+.|| .+..|+++.++ +|+++|||||+|.+.++|++|++ +|+..++||
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G--------~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 86 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYG--------KVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR 86 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTS--------CEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC--------CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 456799999999999999999999999 45679999887 58999999999999999999995 799999999
Q ss_pred EEEEEec
Q psy16116 515 YIELFRS 521 (612)
Q Consensus 515 ~IeV~~a 521 (612)
.|.|..+
T Consensus 87 ~l~v~~a 93 (94)
T 2e5h_A 87 VIKASIA 93 (94)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 9999875
No 92
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7e-15 Score=127.94 Aligned_cols=79 Identities=18% Similarity=0.155 Sum_probs=72.3
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+++++++|+++|+.|| .+..|.|+.+. +|+++|||||+|.+.++|++|++ +|+..++||
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 93 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYG--------EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 93 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccC--------CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 457899999999999999999999999 45679999887 69999999999999999999997 799999999
Q ss_pred EEEEEecch
Q psy16116 515 YIELFRSTT 523 (612)
Q Consensus 515 ~IeV~~as~ 523 (612)
.|.|..+..
T Consensus 94 ~l~V~~a~~ 102 (106)
T 1p27_B 94 PISVDWCFV 102 (106)
T ss_dssp BCEEEESEE
T ss_pred EEEEEeecC
Confidence 999988753
No 93
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.8e-15 Score=128.10 Aligned_cols=79 Identities=22% Similarity=0.179 Sum_probs=71.5
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.+. +|+++|||||+|.+.++|++||+ +|+..|+||
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFG--------DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 82 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTS--------CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccC--------CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 456799999999999999999999999 44669998885 79999999999999999999996 799999999
Q ss_pred EEEEEecch
Q psy16116 515 YIELFRSTT 523 (612)
Q Consensus 515 ~IeV~~as~ 523 (612)
.|.|..+..
T Consensus 83 ~l~V~~a~~ 91 (102)
T 2cqb_A 83 TIRVNLAKP 91 (102)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999998753
No 94
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9.1e-15 Score=126.75 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=70.7
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.++ +|+++|||||+|.+.++|++||+ +++.|+||.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~ 84 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFG--------EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRW 84 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGS--------CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcC--------CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeE
Confidence 456799999999999999999999999 45679999986 69999999999999999999998 578999999
Q ss_pred EEEEecch
Q psy16116 516 IELFRSTT 523 (612)
Q Consensus 516 IeV~~as~ 523 (612)
|.|..+..
T Consensus 85 l~v~~a~~ 92 (103)
T 2cqg_A 85 CDCKLPNS 92 (103)
T ss_dssp EEEECCCT
T ss_pred EEEEecCC
Confidence 99998754
No 95
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.56 E-value=1e-14 Score=137.63 Aligned_cols=132 Identities=14% Similarity=0.074 Sum_probs=73.2
Q ss_pred EEeCCHHHHHHHHH-hCCCccC--ceEEEEeccCccc---hhhccCCCCc-chhhhccCCcccEEEEeCCCCCCCHHHHH
Q psy16116 384 VRFIDQEHRDMALK-RHKHHID--KRYIEVTKANGED---FINVAGGNNN-EAQAFLTRGAQVIIRMRGLPYECTAKQVI 456 (612)
Q Consensus 384 VeF~S~EdA~kAL~-~ng~~Ig--gR~IeV~~s~~~e---~~~~~g~~~~-e~~~~~~~~~~~~VfV~nLP~s~te~dLr 456 (612)
.+|++.+|++.|+. +++.... ||...+....... +......... ............+|||+|||+++++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 88999999999986 3433332 4444443322111 1100000000 00001112356789999999999999999
Q ss_pred HHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecch
Q psy16116 457 DFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTT 523 (612)
Q Consensus 457 efF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~ 523 (612)
++|+.|| .+..|.|+.+. +|+++|||||+|.+.++|++||+ +|+..|+||.|.|..+..
T Consensus 91 ~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 151 (165)
T 1rk8_A 91 EKFCDYG--------EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 151 (165)
T ss_dssp HHHGGGS--------CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred HHhhcCC--------CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 9999999 45679999885 89999999999999999999996 799999999999998754
No 96
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=6.3e-15 Score=127.77 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=72.0
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.+ +|+++|||||+|.+.++|++||+ +|+..++||.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFG--------TITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTS--------CEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 457899999999999999999999999 4567999998 99999999999999999999997 7999999999
Q ss_pred EEEEecch
Q psy16116 516 IELFRSTT 523 (612)
Q Consensus 516 IeV~~as~ 523 (612)
|.|..+..
T Consensus 85 l~V~~a~~ 92 (103)
T 2d9p_A 85 LYVALAQR 92 (103)
T ss_dssp CEEEECSS
T ss_pred EEEEEecc
Confidence 99998753
No 97
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.2e-15 Score=127.66 Aligned_cols=83 Identities=19% Similarity=0.271 Sum_probs=74.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
.++|||+|||+++++++|+++|+.|| .+..|+++.++ +|+++|||||+|.+.++|++|++ +|+..++||.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G--------~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVG--------PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA 79 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTS--------CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcC--------CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 46799999999999999999999999 44679999886 79999999999999999999996 7999999999
Q ss_pred EEEEecchHHHHH
Q psy16116 516 IELFRSTTAEVQQ 528 (612)
Q Consensus 516 IeV~~as~~e~~~ 528 (612)
|.|..+..+....
T Consensus 80 l~v~~a~~~~~~~ 92 (104)
T 1p1t_A 80 LRVDNAASEKNKE 92 (104)
T ss_dssp BEEEETTCTTHHH
T ss_pred EEEEeCCCccchh
Confidence 9999997655443
No 98
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.8e-15 Score=134.68 Aligned_cols=87 Identities=26% Similarity=0.413 Sum_probs=76.4
Q ss_pred CcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccc
Q psy16116 338 VALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGED 417 (612)
Q Consensus 338 ~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e 417 (612)
...+|+|+|||++.++++|++||....+.+|+|+++++|+++|||||+|.+.++|++||++|++.|+||.|+|..++..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~~ 94 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQ 94 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTSCCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCccc
Confidence 34567788888888888888888766788999999999999999999999999999999999999999999999999888
Q ss_pred hhhccCC
Q psy16116 418 FINVAGG 424 (612)
Q Consensus 418 ~~~~~g~ 424 (612)
|....+.
T Consensus 95 ~~~~~g~ 101 (109)
T 2dnn_A 95 WVAAGGH 101 (109)
T ss_dssp HHHHHCC
T ss_pred hhhcCCc
Confidence 8765443
No 99
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.4e-15 Score=130.16 Aligned_cols=79 Identities=23% Similarity=0.360 Sum_probs=72.0
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.+. +|+++|||||+|.+.++|++||+.++..|+||.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 97 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWG--------KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRV 97 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSC--------CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEE
Confidence 357899999999999999999999999 44679999886 699999999999999999999988999999999
Q ss_pred EEEEecch
Q psy16116 516 IELFRSTT 523 (612)
Q Consensus 516 IeV~~as~ 523 (612)
|.|..+..
T Consensus 98 l~V~~a~~ 105 (116)
T 1x4b_A 98 VEPKRAVA 105 (116)
T ss_dssp EEEECCSS
T ss_pred EEEEECCC
Confidence 99988653
No 100
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=6.5e-15 Score=126.35 Aligned_cols=78 Identities=22% Similarity=0.278 Sum_probs=70.1
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCC--C--CceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPD--G--KATGDAFVLFEKEEEADKALS-KHKESI 511 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~--G--rskG~AFV~F~s~edA~kAL~-~~~~~i 511 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.+.+ | +++|||||+|.+.++|++||+ +|+..|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 75 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVG--------AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV 75 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTS--------CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee
Confidence 346799999999999999999999999 456789988754 4 899999999999999999997 799999
Q ss_pred CCEEEEEEecc
Q psy16116 512 GIRYIELFRST 522 (612)
Q Consensus 512 ggR~IeV~~as 522 (612)
+||.|.|..+.
T Consensus 76 ~g~~l~V~~a~ 86 (98)
T 2cpf_A 76 DGHKLEVRISE 86 (98)
T ss_dssp TTEECEEECSS
T ss_pred CCeEEEEEEcc
Confidence 99999998875
No 101
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.56 E-value=1e-14 Score=130.96 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=73.2
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.+.+|+++|||||+|.+.++|++|++ +|+..++||.
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFG--------TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTS--------CCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 567899999999999999999999999 4567999999899999999999999999999997 7999999999
Q ss_pred EEEEecch
Q psy16116 516 IELFRSTT 523 (612)
Q Consensus 516 IeV~~as~ 523 (612)
|.|..+..
T Consensus 106 l~V~~a~~ 113 (124)
T 2kt5_A 106 MDIQLVAS 113 (124)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99998753
No 102
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.7e-15 Score=127.99 Aligned_cols=79 Identities=23% Similarity=0.356 Sum_probs=71.2
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCC--CCceeEEEEEeCCHHHHHHHHHhCCcccCC
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPD--GKATGDAFVLFEKEEEADKALSKHKESIGI 513 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~--GrskG~AFV~F~s~edA~kAL~~~~~~igg 513 (612)
...++|||+|||+++++++|+++|+.||| ..|+|+.+.. |+++|||||+|.+.++|++||.+|+..|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~Gi---------~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g 83 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLNI---------SAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGN 83 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSCE---------EEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETT
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCCc---------eEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCC
Confidence 35688999999999999999999999982 4688888874 899999999999999999999889999999
Q ss_pred EEEEEEecch
Q psy16116 514 RYIELFRSTT 523 (612)
Q Consensus 514 R~IeV~~as~ 523 (612)
|.|.|..+..
T Consensus 84 ~~l~V~~a~~ 93 (104)
T 1wi8_A 84 KRIRVDVADQ 93 (104)
T ss_dssp EECEEEECCC
T ss_pred cEEEEEEccC
Confidence 9999998753
No 103
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4.2e-15 Score=128.91 Aligned_cols=78 Identities=21% Similarity=0.263 Sum_probs=71.8
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhc-CCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcc-cCC
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKES-IGI 513 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~-~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~-igg 513 (612)
...+|||+|||+++++++|+++|+. || .+..|+|+.|.+|+++|||||+|.+.++|++||+ +++.. ++|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G--------~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g 79 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYP--------SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS 79 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCT--------TEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCC--------CeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC
Confidence 4577999999999999999999999 99 4567999999999999999999999999999997 79999 999
Q ss_pred EEEEEEecc
Q psy16116 514 RYIELFRST 522 (612)
Q Consensus 514 R~IeV~~as 522 (612)
|.|.|..+.
T Consensus 80 ~~l~v~~a~ 88 (104)
T 2dhg_A 80 KPVRLSVAI 88 (104)
T ss_dssp SCCCCCBCC
T ss_pred EeEEEEEcc
Confidence 999998764
No 104
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.9e-15 Score=127.53 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=71.3
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.++ +|+++|||||+|.+.++|++||+ +|+..++||
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYG--------QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR 82 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHS--------CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC--------CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 457899999999999999999999999 45679999886 78999999999999999999995 799999999
Q ss_pred EEEEEecc
Q psy16116 515 YIELFRST 522 (612)
Q Consensus 515 ~IeV~~as 522 (612)
.|.|..+.
T Consensus 83 ~l~v~~a~ 90 (102)
T 1x5s_A 83 QIRVDQAG 90 (102)
T ss_dssp CCEEEEEE
T ss_pred EEEEEECC
Confidence 99998875
No 105
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.55 E-value=9.9e-15 Score=123.62 Aligned_cols=77 Identities=25% Similarity=0.245 Sum_probs=70.1
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
..++|||+|||+++++++|+++|+.|| .+..|+|+.+ +|+++|||||+|.+.++|++|++ +|+..++||.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G--------~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECG--------HVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTS--------CEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 457899999999999999999999999 4567888874 89999999999999999999997 7999999999
Q ss_pred EEEEecc
Q psy16116 516 IELFRST 522 (612)
Q Consensus 516 IeV~~as 522 (612)
|.|..+.
T Consensus 78 l~v~~a~ 84 (92)
T 2dgv_A 78 IDVRIDR 84 (92)
T ss_dssp CCCEECS
T ss_pred EEEEEcC
Confidence 9998764
No 106
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.9e-14 Score=124.69 Aligned_cols=79 Identities=22% Similarity=0.298 Sum_probs=71.2
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
....+|||+|||+++++++|+++|+.|| .+..|+|+.+..+ ++|||||+|.+.++|++||+ +|+..|+||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G--------~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFG--------KILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTS--------CEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3567899999999999999999999999 4567999988765 99999999999999999997 799999999
Q ss_pred EEEEEecch
Q psy16116 515 YIELFRSTT 523 (612)
Q Consensus 515 ~IeV~~as~ 523 (612)
.|.|..+..
T Consensus 84 ~l~v~~a~~ 92 (103)
T 2cq3_A 84 KIEVNNATA 92 (103)
T ss_dssp ECEEEECCS
T ss_pred EEEEEEccc
Confidence 999998753
No 107
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=5.1e-15 Score=128.34 Aligned_cols=78 Identities=18% Similarity=0.281 Sum_probs=71.7
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+++++++|+++|+.|| .+..|.|+.+. +|+++|||||+|.+.++|++||+ +|+..++||
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYG--------RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTS--------CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 457899999999999999999999999 45679999887 59999999999999999999997 799999999
Q ss_pred EEEEEecc
Q psy16116 515 YIELFRST 522 (612)
Q Consensus 515 ~IeV~~as 522 (612)
.|.|..+.
T Consensus 84 ~l~V~~a~ 91 (103)
T 2dnm_A 84 ELRVQVAR 91 (103)
T ss_dssp CCEEEECS
T ss_pred EEEEEECC
Confidence 99999875
No 108
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=3.7e-15 Score=121.99 Aligned_cols=74 Identities=19% Similarity=0.358 Sum_probs=67.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEE
Q psy16116 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYIEL 518 (612)
Q Consensus 440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV 518 (612)
+|||+|||+++++++|+++|+.+| .+..|+++.++ +|+++|||||+|.+.++|++|++..+..++||.|.|
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G--------~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v 73 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFG--------EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 73 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTS--------CCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEE
Confidence 599999999999999999999999 44679999886 699999999999999999999985449999999999
Q ss_pred Eec
Q psy16116 519 FRS 521 (612)
Q Consensus 519 ~~a 521 (612)
..+
T Consensus 74 ~~a 76 (77)
T 1uaw_A 74 KVA 76 (77)
T ss_dssp EEC
T ss_pred Eec
Confidence 865
No 109
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1e-14 Score=128.48 Aligned_cols=78 Identities=22% Similarity=0.257 Sum_probs=71.0
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCce--------eEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-h
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEE--------GVLFVKKP-DGKATGDAFVLFEKEEEADKALS-K 506 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~--------~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~ 506 (612)
...+|||+|||+++++++|+++|+.|| .| . .|+|+.++ +|+++|||||+|.+.++|++||+ +
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G----~i----~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 85 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCG----VV----KMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWF 85 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTS----CB----CBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcC----CE----eEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHc
Confidence 567899999999999999999999999 33 4 58999884 79999999999999999999997 7
Q ss_pred CCcccCCEEEEEEecc
Q psy16116 507 HKESIGIRYIELFRST 522 (612)
Q Consensus 507 ~~~~iggR~IeV~~as 522 (612)
|+..|+||.|.|..+.
T Consensus 86 ~g~~~~g~~l~V~~a~ 101 (113)
T 2cpe_A 86 DGKDFQGSKLKVSLAR 101 (113)
T ss_dssp TTCEETTEECEEECSS
T ss_pred CCCccCCCEEEEEECC
Confidence 9999999999998865
No 110
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.55 E-value=8.6e-15 Score=131.06 Aligned_cols=78 Identities=15% Similarity=0.270 Sum_probs=71.8
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~ 515 (612)
..++|||+|||+++++++|+++|+.|| .+..|+|+.++ +|+++|||||+|.+.++|++||++|+..|+||.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 106 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCG--------SINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRT 106 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTS--------CEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 357899999999999999999999999 45679999885 899999999999999999999988999999999
Q ss_pred EEEEecc
Q psy16116 516 IELFRST 522 (612)
Q Consensus 516 IeV~~as 522 (612)
|.|..+.
T Consensus 107 l~V~~a~ 113 (124)
T 2jwn_A 107 IKVLPKR 113 (124)
T ss_dssp CEEEESS
T ss_pred EEEEECC
Confidence 9998764
No 111
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.55 E-value=1.1e-14 Score=125.39 Aligned_cols=79 Identities=15% Similarity=0.080 Sum_probs=71.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEE
Q psy16116 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIE 517 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~Ie 517 (612)
.-|+|+||++.+||++|+++|.+|| .+.++++.. +||||||+|.+.++|++|++ +|+..++||.|+
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G--------~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~ 74 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHG--------PLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIF 74 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHS--------CEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhC--------CEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 4599999999999999999999999 446688763 79999999999999999996 899999999999
Q ss_pred EEecchHHHHHHh
Q psy16116 518 LFRSTTAEVQQVL 530 (612)
Q Consensus 518 V~~as~~e~~~~~ 530 (612)
|..++..|+....
T Consensus 75 V~~A~e~~~~~~~ 87 (89)
T 2wbr_A 75 AESPSENEVQSIM 87 (89)
T ss_dssp EECCCHHHHHHHH
T ss_pred EEECCHHHHHHHh
Confidence 9999988877654
No 112
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=127.42 Aligned_cols=79 Identities=19% Similarity=0.232 Sum_probs=71.6
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hC------C
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KH------K 508 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~------~ 508 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.|. +|+++|||||+|.+.++|++||+ +| +
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFG--------DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTS--------CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC--------CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 457899999999999999999999999 45679999886 68999999999999999999997 68 9
Q ss_pred cccCCEEEEEEecch
Q psy16116 509 ESIGIRYIELFRSTT 523 (612)
Q Consensus 509 ~~iggR~IeV~~as~ 523 (612)
..++||.|.|..+..
T Consensus 86 ~~~~g~~l~v~~a~~ 100 (111)
T 1x4h_A 86 LKLDGRQLKVDLAVT 100 (111)
T ss_dssp EESSSCEEEEECCCC
T ss_pred cEEcCEEEEEEECCC
Confidence 999999999988753
No 113
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.55 E-value=1.1e-14 Score=127.73 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=72.3
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.+. +|+++|||||+|.+.++|++||+ +|+..++||
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYG--------EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 567899999999999999999999999 45679998886 79999999999999999999997 799999999
Q ss_pred EEEEEecch
Q psy16116 515 YIELFRSTT 523 (612)
Q Consensus 515 ~IeV~~as~ 523 (612)
.|.|..+..
T Consensus 97 ~l~V~~a~~ 105 (110)
T 1oo0_B 97 TIQVDWCFV 105 (110)
T ss_dssp ECEEEESEE
T ss_pred EEEEEEccc
Confidence 999998753
No 114
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.55 E-value=8.9e-15 Score=129.12 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=72.6
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI 513 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg 513 (612)
...++|||+|||+++++++|+++|+.|| .+..|+|+.++ +|+++|||||+|.+.++|++|++ +++..++|
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g 95 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFG--------RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 95 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTS--------CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3567899999999999999999999999 45679999885 78999999999999999999996 79999999
Q ss_pred EEEEEEecch
Q psy16116 514 RYIELFRSTT 523 (612)
Q Consensus 514 R~IeV~~as~ 523 (612)
|.|.|..+..
T Consensus 96 ~~l~V~~a~~ 105 (108)
T 2jrs_A 96 RPMKVGHVTE 105 (108)
T ss_dssp SCCEEECSCS
T ss_pred EEEEEEEccc
Confidence 9999988753
No 115
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=125.94 Aligned_cols=76 Identities=28% Similarity=0.365 Sum_probs=69.6
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
..++|||+|||+++++++|+++|+.|| .|+++.+.+|+++|||||+|.+.++|++||+ +|+..|+||.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-----------~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 82 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKAT-----------FIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 82 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCS-----------EEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC-----------EEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeE
Confidence 467899999999999999999999998 2577778889999999999999999999997 8999999999
Q ss_pred EEEEecch
Q psy16116 516 IELFRSTT 523 (612)
Q Consensus 516 IeV~~as~ 523 (612)
|.|..+..
T Consensus 83 l~v~~a~~ 90 (101)
T 2fc9_A 83 IRLELQGP 90 (101)
T ss_dssp EEEEECSS
T ss_pred EEEEEcCC
Confidence 99998753
No 116
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.55 E-value=7.4e-15 Score=130.39 Aligned_cols=78 Identities=14% Similarity=0.117 Sum_probs=71.2
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI 513 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg 513 (612)
...++|||+|||+++++++|+++|+.|| .+..|+|+.++ +|+++|||||+|.+.++|++||+ +|+..++|
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 109 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFG--------NVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT 109 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSC--------EEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3568899999999999999999999999 45679999885 69999999999999999999997 79999999
Q ss_pred EEEEEEec
Q psy16116 514 RYIELFRS 521 (612)
Q Consensus 514 R~IeV~~a 521 (612)
|.|+|..+
T Consensus 110 ~~l~V~~a 117 (118)
T 2khc_A 110 KRLKVQLK 117 (118)
T ss_dssp EECCEEEC
T ss_pred EEEEEEec
Confidence 99999865
No 117
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=126.81 Aligned_cols=79 Identities=23% Similarity=0.321 Sum_probs=71.8
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC--CCCceeEEEEEeCCHHHHHHHHH-h-CCcccC
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP--DGKATGDAFVLFEKEEEADKALS-K-HKESIG 512 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~--~GrskG~AFV~F~s~edA~kAL~-~-~~~~ig 512 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.+. +|+++|||||+|.+.++|++||+ + |+..|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFG--------ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTS--------CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccC--------CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 457899999999999999999999999 45679998883 89999999999999999999996 6 899999
Q ss_pred CEEEEEEecch
Q psy16116 513 IRYIELFRSTT 523 (612)
Q Consensus 513 gR~IeV~~as~ 523 (612)
||.|.|..+..
T Consensus 86 g~~l~v~~a~~ 96 (107)
T 2cph_A 86 GRRLVLEWADS 96 (107)
T ss_dssp SCBCEEEECCC
T ss_pred CCEEEEEeCCC
Confidence 99999998753
No 118
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.55 E-value=2.4e-15 Score=138.10 Aligned_cols=117 Identities=14% Similarity=0.125 Sum_probs=72.1
Q ss_pred eEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHH
Q psy16116 381 EAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFF 459 (612)
Q Consensus 381 ~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF 459 (612)
++|+++++..-+..|++ +++...+|+.- .. .+.... +.....+|||+|||+++++++|+++|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~----------~~~~~~------~~~~~~~l~V~nLp~~~te~~L~~~F 68 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MS----------YGRPPP------DVEGMTSLKVDNLTYRTSPDTLRRVF 68 (135)
T ss_dssp ------------------------------CC----------SCCSCS------SGGGCCCEEEECCCSSCHHHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CC----------cCCCCC------CCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 55667777777777775 45544444320 00 000000 11234679999999999999999999
Q ss_pred hcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecc
Q psy16116 460 EAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRST 522 (612)
Q Consensus 460 ~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as 522 (612)
+.|| .+..|+|+.+. +|+++|||||+|.+.++|++||+ +|+..|+||.|.|..+.
T Consensus 69 ~~~G--------~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 69 EKYG--------RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GGGS--------CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred HhcC--------CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 9999 44679998886 79999999999999999999996 79999999999998865
No 119
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.54 E-value=6.3e-15 Score=127.55 Aligned_cols=78 Identities=14% Similarity=0.212 Sum_probs=72.1
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI 516 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I 516 (612)
..++|||+|||+++++++|+++|+.|| .+..|+|+.|.+|+++|||||+|.+.++|++|++ ++..|+||.|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l 78 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYG--------SVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKL 78 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC--------CeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEE
Confidence 347899999999999999999999999 4577999999999999999999999999999999 9999999999
Q ss_pred EEEecch
Q psy16116 517 ELFRSTT 523 (612)
Q Consensus 517 eV~~as~ 523 (612)
.|..+..
T Consensus 79 ~v~~a~~ 85 (102)
T 2xs2_A 79 KLGPAIR 85 (102)
T ss_dssp EEEEEEE
T ss_pred EEEECCc
Confidence 9988753
No 120
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.54 E-value=1e-14 Score=122.17 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=69.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCC-C-CceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPD-G-KATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~-G-rskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
..+|||+|||+++++++|+++|+.|| .+..|+|+.+.. + +++|||||+|.+.++|++|++ +|+..++||
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYG--------KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQ 75 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTS--------CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCC--------CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCe
Confidence 46799999999999999999999999 456799988873 4 499999999999999999997 799999999
Q ss_pred EEEEEecc
Q psy16116 515 YIELFRST 522 (612)
Q Consensus 515 ~IeV~~as 522 (612)
.|.|..+.
T Consensus 76 ~l~v~~a~ 83 (88)
T 4a8x_A 76 EITATAVL 83 (88)
T ss_dssp ECEEEEEC
T ss_pred EEEEEECC
Confidence 99998874
No 121
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.54 E-value=2.8e-15 Score=129.94 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=69.9
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC--CCCceeEEEEEeCCHHHHHHHHHhCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP--DGKATGDAFVLFEKEEEADKALSKHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~--~GrskG~AFV~F~s~edA~kAL~~~~~~iggR 514 (612)
..++|||+|||+++++++|+++|+.||| ..|+|+.+. +|+++|||||+|.+.++|++||++|+..++||
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~Gi---------~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~ 88 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLNI---------SAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNR 88 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSCE---------EEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCC---------eEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCe
Confidence 4578999999999999999999999982 468888886 79999999999999999999998899999999
Q ss_pred EEEEEecch
Q psy16116 515 YIELFRSTT 523 (612)
Q Consensus 515 ~IeV~~as~ 523 (612)
.|.|..+..
T Consensus 89 ~l~V~~a~~ 97 (100)
T 2j76_E 89 RIRVDVADQ 97 (100)
T ss_dssp CCCCEECCC
T ss_pred EEEEEeccC
Confidence 999988753
No 122
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=124.75 Aligned_cols=78 Identities=18% Similarity=0.162 Sum_probs=70.8
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCce-eEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEE-GVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI 513 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~-~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg 513 (612)
...+|||+|||+++++++|+++|+.|| .+. .|+|+.|+ +|+++|||||+|.+.++|++|++ +|+..++|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMG--------ETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG 79 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTT--------CCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhC--------CcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 457899999999999999999999999 345 79999987 79999999999999999999998 79999999
Q ss_pred EE----EEEEecc
Q psy16116 514 RY----IELFRST 522 (612)
Q Consensus 514 R~----IeV~~as 522 (612)
|. |.|..+.
T Consensus 80 ~~~~~~l~v~~a~ 92 (99)
T 2div_A 80 ATPAKRFKLNYAT 92 (99)
T ss_dssp CSSCEECCEEETT
T ss_pred CCcceeEEEeecC
Confidence 99 8887764
No 123
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.4e-14 Score=124.09 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=70.5
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.+..+ ++|||||+|.+.++|++||+ +|+..++||.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIG--------PCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHS--------CEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcC--------CEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 467899999999999999999999999 4567999988644 79999999999999999997 8999999999
Q ss_pred EEEEecch
Q psy16116 516 IELFRSTT 523 (612)
Q Consensus 516 IeV~~as~ 523 (612)
|.|..+..
T Consensus 85 l~V~~a~~ 92 (103)
T 2cqi_A 85 VKVNWATT 92 (103)
T ss_dssp EEEEECCC
T ss_pred EEEEECCC
Confidence 99998754
No 124
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.53 E-value=1.8e-14 Score=131.47 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=72.3
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.++ +|+++|||||+|.+.++|++||+ +|+..|+||
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYG--------PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHS--------CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 457899999999999999999999999 45679999886 68999999999999999999997 799999999
Q ss_pred EEEEEecch
Q psy16116 515 YIELFRSTT 523 (612)
Q Consensus 515 ~IeV~~as~ 523 (612)
.|.|..+..
T Consensus 113 ~l~v~~a~~ 121 (139)
T 1u6f_A 113 RLKVALAAS 121 (139)
T ss_dssp EEEEEESSC
T ss_pred EEEEEECCC
Confidence 999998753
No 125
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.2e-14 Score=123.38 Aligned_cols=76 Identities=20% Similarity=0.207 Sum_probs=69.4
Q ss_pred cccEEEEeCCCCCCCHHHHH----HHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116 437 AQVIIRMRGLPYECTAKQVI----DFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI 511 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLr----efF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i 511 (612)
...+|||+|||+++++++|+ ++|+.|| .+..|+|+.|+.+ +|||||+|.+.++|++|++ +|+..+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G--------~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~ 77 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHG--------KVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKI 77 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHS--------CEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccC--------cEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 45689999999999999999 9999999 4567999988876 8999999999999999997 899999
Q ss_pred CCEEEEEEecc
Q psy16116 512 GIRYIELFRST 522 (612)
Q Consensus 512 ggR~IeV~~as 522 (612)
+||.|.|..+.
T Consensus 78 ~gr~l~V~~a~ 88 (96)
T 2dgx_A 78 GSKKILVSLAT 88 (96)
T ss_dssp TTEEEEEEECC
T ss_pred CCeEEEEEEcC
Confidence 99999998864
No 126
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.53 E-value=1.3e-14 Score=126.30 Aligned_cols=79 Identities=22% Similarity=0.227 Sum_probs=71.2
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCccc---
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESI--- 511 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~i--- 511 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.|+ +|+++|||||+|.+.++|++|++ +|+..+
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 83 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFG--------KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG 83 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHS--------CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 457899999999999999999999999 45679999887 59999999999999999999996 799887
Q ss_pred CCEEEEEEecch
Q psy16116 512 GIRYIELFRSTT 523 (612)
Q Consensus 512 ggR~IeV~~as~ 523 (612)
+||.|.|..+..
T Consensus 84 ~g~~l~v~~a~~ 95 (106)
T 2dgp_A 84 MNRPIQVKPADS 95 (106)
T ss_dssp CSSCCEEEECCC
T ss_pred CCceEEEEECCc
Confidence 899999988753
No 127
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.8e-14 Score=126.39 Aligned_cols=78 Identities=23% Similarity=0.308 Sum_probs=70.4
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHh-CCcccCC
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSK-HKESIGI 513 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~-~~~~igg 513 (612)
...++|||+|||+++++++|+++|+.|| .+..|+|+.++ +|+++|||||+|.+.++|++||+. ++ .|+|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g 85 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFG--------DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG 85 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTS--------CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC--------CeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC
Confidence 3567899999999999999999999999 45679999886 699999999999999999999975 65 8999
Q ss_pred EEEEEEecc
Q psy16116 514 RYIELFRST 522 (612)
Q Consensus 514 R~IeV~~as 522 (612)
|.|.|..+.
T Consensus 86 ~~l~V~~a~ 94 (116)
T 2cqd_A 86 RKANVNLAY 94 (116)
T ss_dssp EECEEEEST
T ss_pred EEEEEEEcc
Confidence 999999875
No 128
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=127.17 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=70.5
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .+..|+++.+.. +++|||||+|.+.++|++|++ +|+..++||.
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G--------~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFG--------KILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTC--------CCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcC--------CEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 567899999999999999999999999 446699988854 599999999999999999997 7999999999
Q ss_pred EEEEecch
Q psy16116 516 IELFRSTT 523 (612)
Q Consensus 516 IeV~~as~ 523 (612)
|.|..+..
T Consensus 99 l~V~~a~~ 106 (109)
T 2err_A 99 IEVNNATA 106 (109)
T ss_dssp CEEEECCC
T ss_pred EEEEECCC
Confidence 99998764
No 129
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.5e-15 Score=124.12 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=68.7
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+++++++|+++|+.|| .+..++|+.++ +|+++|||||+|.+.++|++|++ +|+..++||
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--------~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYG--------KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ 75 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTS--------CEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence 456899999999999999999999999 45679999886 79999999999999999999997 799999999
Q ss_pred EEEEEe
Q psy16116 515 YIELFR 520 (612)
Q Consensus 515 ~IeV~~ 520 (612)
.|+|..
T Consensus 76 ~~~~~~ 81 (85)
T 1x4e_A 76 MAKQSG 81 (85)
T ss_dssp SCCSSC
T ss_pred EEeecC
Confidence 887654
No 130
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.52 E-value=7.5e-15 Score=130.72 Aligned_cols=104 Identities=12% Similarity=0.054 Sum_probs=58.0
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchh
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFI 419 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~ 419 (612)
+||+|||++.++++|+++|.. +.+.+|+|+++++ +++|||||+|.+.++|++||+ +++..|+||.|.|..+......
T Consensus 8 lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~ 86 (115)
T 4f25_A 8 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 86 (115)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC-
T ss_pred EEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcccc
Confidence 445566665555555555544 4588999998864 589999999999999999996 7999999999999776543211
Q ss_pred hccCCCCcchhhhccCCcccEEEEeCCCCCCCHHH
Q psy16116 420 NVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQ 454 (612)
Q Consensus 420 ~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~d 454 (612)
...... .......|||+|||+++|++.
T Consensus 87 ~~~~~~--------~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 87 EAELGA--------RAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -----------------------------------
T ss_pred cccccc--------ccCCCCceEeCCCCCCccccc
Confidence 110000 011234699999999999863
No 131
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=2e-14 Score=124.08 Aligned_cols=72 Identities=19% Similarity=0.139 Sum_probs=65.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEE
Q psy16116 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIEL 518 (612)
Q Consensus 440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV 518 (612)
+|||+|||+++++++|+++|+.|| .+..|+++.+ ++|||||+|.+.++|++|++ +|+..++||.|.|
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 69 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYG--------PLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRV 69 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHC--------CCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEE
Confidence 699999999999999999999999 4467898876 88999999999999999997 7999999999999
Q ss_pred Eecch
Q psy16116 519 FRSTT 523 (612)
Q Consensus 519 ~~as~ 523 (612)
..+..
T Consensus 70 ~~a~~ 74 (101)
T 2hvz_A 70 ELSTG 74 (101)
T ss_dssp EESSS
T ss_pred EEccC
Confidence 98753
No 132
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.51 E-value=2.9e-14 Score=129.50 Aligned_cols=78 Identities=22% Similarity=0.175 Sum_probs=70.5
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI 513 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg 513 (612)
....+|||+|||+++++++|+++|+.|| .+..|+|+.++ +|+++|||||+|.+.++|++||+ +|+..++|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFG--------DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGS--------CEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcC--------CEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3568899999999999999999999999 45679999885 79999999999999999999995 79999999
Q ss_pred EEEEEEec
Q psy16116 514 RYIELFRS 521 (612)
Q Consensus 514 R~IeV~~a 521 (612)
|.|+|..+
T Consensus 133 ~~l~v~~A 140 (140)
T 2ku7_A 133 RTIRVNLA 140 (140)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEeC
Confidence 99999754
No 133
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.51 E-value=8.4e-15 Score=121.89 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=63.8
Q ss_pred cEEEEeCCCCCC------CHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116 439 VIIRMRGLPYEC------TAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI 511 (612)
Q Consensus 439 ~~VfV~nLP~s~------te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i 511 (612)
.+|||+|||+++ ++++|+++|+.|| .+..|+++ ..+|+++|||||+|.+.++|++|++ +|+..+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G--------~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 72 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG--------KITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 72 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTC--------CEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcC--------CeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCccc
Confidence 579999999999 7799999999999 44668877 5689999999999999999999997 799999
Q ss_pred CCE-EEEE
Q psy16116 512 GIR-YIEL 518 (612)
Q Consensus 512 ggR-~IeV 518 (612)
+|| .|.|
T Consensus 73 ~g~~~l~V 80 (81)
T 2krb_A 73 DKQHTFRV 80 (81)
T ss_dssp SSSSCCCC
T ss_pred CCceeEEe
Confidence 999 8766
No 134
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.51 E-value=6.3e-15 Score=134.01 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=70.9
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCc----
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKE---- 509 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~---- 509 (612)
....+|||+|||+++++++|+++|+.|| .| ....|+|++|+ +|++||||||+|.+. +|.+|++ +|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G----~v--~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYA----VL--SSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGC----CC--CTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhC----Cc--ceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 3457899999999999999999999999 33 11239999998 899999999999999 9999996 7999
Q ss_pred ccCCEEEEEEecch
Q psy16116 510 SIGIRYIELFRSTT 523 (612)
Q Consensus 510 ~iggR~IeV~~as~ 523 (612)
.++||.|.|..+..
T Consensus 94 ~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 94 TIDGKTINVEFAKG 107 (131)
T ss_dssp CGGGCCCCCEECCC
T ss_pred cCCCEEEEEEECCC
Confidence 99999999988753
No 135
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.50 E-value=6.6e-15 Score=124.39 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=68.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI 516 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I 516 (612)
++|||+|||+++++++|+++|+.|| .+..|+++.+. +|+++|||||+|.+.+ |++|++ +|+..++||.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFG--------KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTI 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHT--------CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcC--------CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEE
Confidence 4699999999999999999999999 45679999887 5999999999999999 999997 69999999999
Q ss_pred EEEecchH
Q psy16116 517 ELFRSTTA 524 (612)
Q Consensus 517 eV~~as~~ 524 (612)
.|..+...
T Consensus 73 ~V~~a~~~ 80 (90)
T 2ki2_A 73 RVTEANPK 80 (90)
T ss_dssp SEEEC---
T ss_pred EEEEcCCC
Confidence 99988654
No 136
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.50 E-value=2.9e-14 Score=127.94 Aligned_cols=79 Identities=18% Similarity=0.155 Sum_probs=72.3
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+++++++|+++|+.|| .+..|.|+.+. +|+++|||||+|.+.++|++||+ +|+..|+|+
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYG--------EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTS--------CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 467899999999999999999999999 45679998886 89999999999999999999996 799999999
Q ss_pred EEEEEecch
Q psy16116 515 YIELFRSTT 523 (612)
Q Consensus 515 ~IeV~~as~ 523 (612)
.|.|..+..
T Consensus 93 ~l~v~~a~~ 101 (126)
T 3ex7_B 93 PISVDWCFV 101 (126)
T ss_dssp BCEEEESEE
T ss_pred EEEEEEecC
Confidence 999998753
No 137
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.50 E-value=2e-14 Score=131.12 Aligned_cols=79 Identities=22% Similarity=0.232 Sum_probs=71.8
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI 513 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg 513 (612)
....+|||+|||+++++++|+++|+.|| .+..|+|+.|+ +|+++|||||+|.+.++|++||+ +++..|+|
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G--------~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g 115 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYG--------PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 115 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTS--------CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3557899999999999999999999999 45679999886 68999999999999999999997 79999999
Q ss_pred EEEEEEecc
Q psy16116 514 RYIELFRST 522 (612)
Q Consensus 514 R~IeV~~as 522 (612)
|.|.|..+.
T Consensus 116 ~~l~V~~a~ 124 (129)
T 2kxn_B 116 RRIRVDFSI 124 (129)
T ss_dssp SCCEESCCS
T ss_pred EEEEEEEec
Confidence 999998764
No 138
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.50 E-value=5e-14 Score=140.63 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=76.2
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+++|+++|+++|+.||+ + .+..|+|++|+ +|++||||||+|.+.++|++||+ +|+..|+||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~----~--~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr 140 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGV----N--DILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 140 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTC----C--CEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCC----c--ceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE
Confidence 4568999999999999999999999992 1 35679999996 89999999999999999999997 799999999
Q ss_pred EEEEEecchHHHHHH
Q psy16116 515 YIELFRSTTAEVQQV 529 (612)
Q Consensus 515 ~IeV~~as~~e~~~~ 529 (612)
.|.|..+........
T Consensus 141 ~l~V~~a~~~~~~~~ 155 (229)
T 3q2s_C 141 NPVVTPVNKQFLSQF 155 (229)
T ss_dssp CCEEEECCHHHHHHH
T ss_pred EeEEEECCCCccchh
Confidence 999999987765543
No 139
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=4.6e-15 Score=128.19 Aligned_cols=77 Identities=17% Similarity=0.082 Sum_probs=67.6
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKK-PDGKATGDAFVLFEKEEEADKALSKHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d-~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~ 515 (612)
..++|||+|||+++++++|+++|+.|| .| .. .++.+ .+|+++|||||+|.+.++|++||++|+..++||.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G----~v----~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 86 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELF----AK----ND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNE 86 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHH----HH----HT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhC----Cc----ce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcE
Confidence 457899999999999999999999999 33 33 34444 4789999999999999999999999999999999
Q ss_pred EEEEecc
Q psy16116 516 IELFRST 522 (612)
Q Consensus 516 IeV~~as 522 (612)
|.|..+.
T Consensus 87 l~V~~a~ 93 (101)
T 1fj7_A 87 IKLEKPK 93 (101)
T ss_dssp CEEECCS
T ss_pred EEEEEcC
Confidence 9998765
No 140
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=2.2e-14 Score=126.79 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=69.1
Q ss_pred ccEEEEeCCCCCCCHHHHH---HHHhcCCCCccccccCceeEEEeeCCC----CCceeEEEEEeCCHHHHHHHHH-hCCc
Q psy16116 438 QVIIRMRGLPYECTAKQVI---DFFEAGTENSCNVMDGEEGVLFVKKPD----GKATGDAFVLFEKEEEADKALS-KHKE 509 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLr---efF~~~Gi~~~~Ivd~v~~I~i~~d~~----GrskG~AFV~F~s~edA~kAL~-~~~~ 509 (612)
..+|||+|||++++++||+ ++|+.|| .+..|+|+.+.. ++++|||||+|.+.++|++||+ +|+.
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G--------~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~ 86 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFG--------KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV 86 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTS--------CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccC--------CEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC
Confidence 4679999999999999999 9999999 456799987762 3677999999999999999997 6999
Q ss_pred ccCCEEEEEEecch
Q psy16116 510 SIGIRYIELFRSTT 523 (612)
Q Consensus 510 ~iggR~IeV~~as~ 523 (612)
.|+||.|.|..+..
T Consensus 87 ~~~gr~l~V~~a~~ 100 (111)
T 2cpi_A 87 VVDGRTLKASLGTT 100 (111)
T ss_dssp EETTEEEEEESCCC
T ss_pred EECCEEEEEEeccc
Confidence 99999999988753
No 141
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=4.8e-14 Score=121.79 Aligned_cols=76 Identities=21% Similarity=0.283 Sum_probs=68.4
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+++++++|+++|+.++ .|+++.+. +|+++|||||+|.+.++|++||+ +|+..|+||
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~-----------~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSV-----------RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 82 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCS-----------EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCe-----------EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 457799999999999999999999765 37788775 89999999999999999999997 799999999
Q ss_pred EEEEEecch
Q psy16116 515 YIELFRSTT 523 (612)
Q Consensus 515 ~IeV~~as~ 523 (612)
.|.|..+..
T Consensus 83 ~l~V~~a~~ 91 (102)
T 2fc8_A 83 KVTLDWAKP 91 (102)
T ss_dssp ECEEEECCC
T ss_pred EEEEEEecC
Confidence 999998753
No 142
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.49 E-value=8.9e-14 Score=129.60 Aligned_cols=79 Identities=15% Similarity=0.223 Sum_probs=72.7
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.+. +|+++|||||+|.+.++|++||+ +|+..|+||
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 109 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSG--------DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDR 109 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 457899999999999999999999999 45679999987 68999999999999999999997 799999999
Q ss_pred EEEEEecch
Q psy16116 515 YIELFRSTT 523 (612)
Q Consensus 515 ~IeV~~as~ 523 (612)
.|.|..+..
T Consensus 110 ~l~V~~a~~ 118 (156)
T 1h2v_Z 110 IIRTDWDAG 118 (156)
T ss_dssp ECEEEEESC
T ss_pred EEEEEECCC
Confidence 999999853
No 143
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.3e-14 Score=124.29 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=69.4
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEe-eCC-CCCceeEEEEEeCCHHHHHHHHH-hC--Cccc
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFV-KKP-DGKATGDAFVLFEKEEEADKALS-KH--KESI 511 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~-~d~-~GrskG~AFV~F~s~edA~kAL~-~~--~~~i 511 (612)
..++|||+|||+++++++|+++|+.|| . .+..|.++ .+. +|+++|||||+|.+.++|++|++ ++ +..+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G----~---~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~ 79 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVT----E---GVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL 79 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHS----T---TEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhc----C---CceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee
Confidence 457899999999999999999999999 2 15678887 555 68999999999999999999997 65 5899
Q ss_pred CCEEEEEEecch
Q psy16116 512 GIRYIELFRSTT 523 (612)
Q Consensus 512 ggR~IeV~~as~ 523 (612)
+||.|.|..+..
T Consensus 80 ~g~~l~V~~a~~ 91 (109)
T 2dis_A 80 WGHQIAVDWAEP 91 (109)
T ss_dssp TTBCCEEEESCS
T ss_pred cCCeEEEEEcCC
Confidence 999999998753
No 144
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.49 E-value=2.5e-14 Score=125.21 Aligned_cols=77 Identities=14% Similarity=0.165 Sum_probs=69.2
Q ss_pred cccEEEEeCCCCCC------CHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCc
Q psy16116 437 AQVIIRMRGLPYEC------TAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKE 509 (612)
Q Consensus 437 ~~~~VfV~nLP~s~------te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~ 509 (612)
..++|||+|||+.+ ++++|+++|+.|| .+..|.|+ ..+|+++|||||+|.+.++|++||+ +|+.
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G--------~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~ 84 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG--------KITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGY 84 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGS--------CEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCC--------CEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCc
Confidence 35789999999999 7899999999999 44668887 5689999999999999999999997 7999
Q ss_pred ccCCE-EEEEEecc
Q psy16116 510 SIGIR-YIELFRST 522 (612)
Q Consensus 510 ~iggR-~IeV~~as 522 (612)
.++|| .|.|..+.
T Consensus 85 ~~~g~~~l~V~~a~ 98 (105)
T 2nlw_A 85 KLDKQHTFRVNLFT 98 (105)
T ss_dssp ECSTTCEEEEECSC
T ss_pred ccCCCceEEEEEcc
Confidence 99998 99998875
No 145
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7e-14 Score=123.33 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=70.2
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc----
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI---- 511 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i---- 511 (612)
...+|||+|||+++++++|+++|+.|| .+..|+|+.+.+|+++|||||+|.+.++|++||+ +|+..+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 95 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFG--------QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 95 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTS--------CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCc
Confidence 457899999999999999999999999 4567999999999999999999999999999997 799998
Q ss_pred ----CCEEEEEEecc
Q psy16116 512 ----GIRYIELFRST 522 (612)
Q Consensus 512 ----ggR~IeV~~as 522 (612)
.+|.|.|..+.
T Consensus 96 ~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 96 GVSAPTEPLLCKFSG 110 (114)
T ss_dssp TSCCCSSCBEEEECC
T ss_pred cccCCCCceeEEccC
Confidence 56778887664
No 146
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1e-13 Score=121.40 Aligned_cols=77 Identities=17% Similarity=0.150 Sum_probs=67.9
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCcccCCE
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL-SKHKESIGIR 514 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL-~~~~~~iggR 514 (612)
....+|||+|||+++++++|+++|+.|| .+..|+|.. +++++|||||+|.+.++|++|| .+|+..|+||
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~v~~~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYG--------AIRDIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3567899999999999999999999999 345677754 4678999999999999999999 5799999999
Q ss_pred EEEEEecc
Q psy16116 515 YIELFRST 522 (612)
Q Consensus 515 ~IeV~~as 522 (612)
.|.|..+.
T Consensus 90 ~l~V~~a~ 97 (109)
T 1x4a_A 90 RLRVEFPR 97 (109)
T ss_dssp ECEEECCC
T ss_pred EEEEEEcc
Confidence 99998765
No 147
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.48 E-value=6.9e-14 Score=125.04 Aligned_cols=76 Identities=18% Similarity=0.157 Sum_probs=65.6
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
..++|||+|||++++++||+++|+.||. .+..+.|.. ++++|||||+|.+.++|++||+ +|+..++||.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~-------~v~~v~i~~---~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~ 96 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSL-------ETTFSSVNT---RDFDGTGALEFPSEEILVEALERLNNIEFRGSV 96 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTC-------CCSEEECSS---CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCC-------eeEEEEEEc---CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4578999999999999999999999992 134466642 3689999999999999999996 7999999999
Q ss_pred EEEEecc
Q psy16116 516 IELFRST 522 (612)
Q Consensus 516 IeV~~as 522 (612)
|.|..+.
T Consensus 97 i~V~~a~ 103 (111)
T 2jvr_A 97 ITVERDD 103 (111)
T ss_dssp EEEEESC
T ss_pred EEEEECC
Confidence 9999875
No 148
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.6e-14 Score=125.96 Aligned_cols=74 Identities=22% Similarity=0.244 Sum_probs=64.9
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hC--CcccCC
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KH--KESIGI 513 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~--~~~igg 513 (612)
...+|||+|||++++|+||+++|+.|| .+..|+|+.+ ||||||+|++.++|++|++ ++ +..++|
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG--------~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G 81 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFG--------KVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 81 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHC--------CEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 457899999999999999999999999 4567888854 7999999999999999997 44 478999
Q ss_pred EEEEEEecch
Q psy16116 514 RYIELFRSTT 523 (612)
Q Consensus 514 R~IeV~~as~ 523 (612)
|.|.|..+..
T Consensus 82 r~l~V~~A~~ 91 (105)
T 1sjq_A 82 QPIYIQFSNH 91 (105)
T ss_dssp EECCBCCCSS
T ss_pred EEEEEEEcCC
Confidence 9999987753
No 149
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=5e-14 Score=120.38 Aligned_cols=74 Identities=27% Similarity=0.477 Sum_probs=65.8
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .| +++ ..+|+++|||||+|.+.++|++|++ +++..++||.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g----~v-------~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDAL----EI-------RLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEE----EE-------CCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCC----cE-------EEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 457899999999999999999999998 32 233 5578999999999999999999997 7999999999
Q ss_pred EEEEecc
Q psy16116 516 IELFRST 522 (612)
Q Consensus 516 IeV~~as 522 (612)
|.|..+.
T Consensus 83 l~v~~a~ 89 (96)
T 1fjc_A 83 VSLYYTG 89 (96)
T ss_dssp EEEEECS
T ss_pred EEEEEcC
Confidence 9998864
No 150
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.46 E-value=9.6e-14 Score=122.21 Aligned_cols=76 Identities=18% Similarity=0.138 Sum_probs=65.6
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCc--ccCC
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKE--SIGI 513 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~--~igg 513 (612)
.+.+|||+|||+++|+++|+++|+.|| .+.+|+++ ++||||||+|.+.++|.+|++ +++. .++|
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG--------~V~~v~i~-----~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~G 86 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFG--------PISYVVVM-----PKKRQALVEFEDVLGACNAVNYAADNQIYIAG 86 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHHHHSCEEETT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccC--------CEEEEEEE-----cCCCEEEEEECCHHHHHHHHHHhcCCCceeCC
Confidence 567899999999999999999999999 45678887 357999999999999999996 5655 4899
Q ss_pred EEEEEEecchHH
Q psy16116 514 RYIELFRSTTAE 525 (612)
Q Consensus 514 R~IeV~~as~~e 525 (612)
|.|.|..+..++
T Consensus 87 r~i~V~~S~~k~ 98 (100)
T 3r27_A 87 HPAFVNYSTSQK 98 (100)
T ss_dssp EEEEEEECSCSC
T ss_pred cEEEEEeccccc
Confidence 999999886543
No 151
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.45 E-value=2.1e-14 Score=131.37 Aligned_cols=80 Identities=30% Similarity=0.387 Sum_probs=69.3
Q ss_pred ccceecCCCHHHHHhhHhhcccccCee--eEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccc
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQVLGLG--GVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGED 417 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~~~v~--~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e 417 (612)
.+|+|+|||++.++++|++||....+. +|+|+++++|+++|||||+|++.++|++||++++..|+||.|+|..++.++
T Consensus 43 ~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~~~e 122 (126)
T 2hgm_A 43 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 122 (126)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEECHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECCHHH
Confidence 356688888888888888877766666 899999999999999999999999999999999999999999999888766
Q ss_pred hh
Q psy16116 418 FI 419 (612)
Q Consensus 418 ~~ 419 (612)
+.
T Consensus 123 ~~ 124 (126)
T 2hgm_A 123 VR 124 (126)
T ss_dssp HC
T ss_pred hh
Confidence 53
No 152
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=2.2e-13 Score=119.60 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=66.3
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCC--
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGI-- 513 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~igg-- 513 (612)
..++|||+|||++++++||+++|+.|| .+..|.|+.| |||||+|.+.++|++||+ +|+..|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 79 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAG--------DVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 79 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGS--------CEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCc
Confidence 467899999999999999999999999 4567888866 899999999999999997 79999999
Q ss_pred ---EEEEEEecch
Q psy16116 514 ---RYIELFRSTT 523 (612)
Q Consensus 514 ---R~IeV~~as~ 523 (612)
|.|.|..+..
T Consensus 80 ~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 80 GETAYIRVKVDGP 92 (108)
T ss_dssp SCEEEEEEEESSC
T ss_pred CcceEEEEEeCCC
Confidence 9999998764
No 153
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.45 E-value=2.4e-13 Score=132.30 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=71.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIE 517 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~Ie 517 (612)
.++|||+|||+++++++|+++|+.|| .+..|+|+.+.+|+++|||||+|.+.++|++||+..+..++||.|.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G--------~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~ 180 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKG--------QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLL 180 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSC--------CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCC--------CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEE
Confidence 47899999999999999999999999 4577999999999999999999999999999999777799999999
Q ss_pred EEecc
Q psy16116 518 LFRST 522 (612)
Q Consensus 518 V~~as 522 (612)
|....
T Consensus 181 V~~~~ 185 (193)
T 2voo_A 181 ILFKD 185 (193)
T ss_dssp EEETT
T ss_pred EEEhH
Confidence 98754
No 154
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.4e-13 Score=120.85 Aligned_cols=74 Identities=22% Similarity=0.210 Sum_probs=65.0
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-h--CCcccCC
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-K--HKESIGI 513 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~--~~~~igg 513 (612)
...+|||+|||++++++||+++|+.|| .+..|+++.+ ||||||+|.+.++|++|++ + ++..++|
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG--------~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 80 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFG--------KVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRN 80 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTS--------CEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 457899999999999999999999999 4456887743 7999999999999999997 3 6778999
Q ss_pred EEEEEEecch
Q psy16116 514 RYIELFRSTT 523 (612)
Q Consensus 514 R~IeV~~as~ 523 (612)
|.|.|..+..
T Consensus 81 r~l~V~~a~~ 90 (101)
T 2cq1_A 81 QPIYIQYSNH 90 (101)
T ss_dssp EECEEEECSC
T ss_pred cEEEEEEcCc
Confidence 9999998764
No 155
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.4e-13 Score=118.86 Aligned_cols=73 Identities=12% Similarity=0.077 Sum_probs=65.5
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .+..|++. +++|||||+|.+.++|++|++ +|+..++||.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G--------~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFG--------FILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTS--------CCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCC--------CEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 457899999999999999999999999 34568886 678999999999999999995 7999999999
Q ss_pred EEEEecc
Q psy16116 516 IELFRST 522 (612)
Q Consensus 516 IeV~~as 522 (612)
|.|..+.
T Consensus 93 l~V~~a~ 99 (101)
T 2la4_A 93 LRTGWGK 99 (101)
T ss_dssp CCCCBCC
T ss_pred EEEEecc
Confidence 9998764
No 156
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=6.9e-14 Score=122.41 Aligned_cols=77 Identities=23% Similarity=0.290 Sum_probs=68.6
Q ss_pred ccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~ 416 (612)
.+|+|+|||++.++++|+++|...++.+|+|+++++|+++|||||+|++.++|++||++|+..|++|.|+|..++..
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 16 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp CEEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCC
Confidence 35668888888888888888887556699999999999999999999999999999999999999999999887764
No 157
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3e-14 Score=129.62 Aligned_cols=82 Identities=22% Similarity=0.325 Sum_probs=68.7
Q ss_pred ccceecCCCHHHHHhhHhhcccccC-----eeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccC
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQVLG-----LGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~~~-----v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~ 414 (612)
.+|+|+|||++.++++|++||...+ +.+|+|+++++|+++|||||+|++.++|++||++|++.|++|+|+|..++
T Consensus 24 ~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 24 VIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRST 103 (123)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEECC
Confidence 4566777777777777776666422 47899999999999999999999999999999999999999999999998
Q ss_pred ccchhhc
Q psy16116 415 GEDFINV 421 (612)
Q Consensus 415 ~~e~~~~ 421 (612)
.+++.+.
T Consensus 104 ~~e~~~~ 110 (123)
T 2dha_A 104 AAEVQQV 110 (123)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776553
No 158
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.43 E-value=8.6e-14 Score=118.92 Aligned_cols=77 Identities=18% Similarity=0.165 Sum_probs=68.3
Q ss_pred cccEEEEeCCCCCCCHHHHH----HHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116 437 AQVIIRMRGLPYECTAKQVI----DFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI 511 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLr----efF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i 511 (612)
...+|||+|||+++++++|+ ++|+.|| .+..|.+. .+|+++|||||+|.+.++|++|++ +|+..+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G--------~i~~v~i~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFG--------QILDILVS--RSLKMRGQAFVIFKEVSSATNALRSMQGFPF 76 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGS--------CEEEEECC--HHHHHTTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCC--------CEEEEEEE--cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 45789999999999999999 9999999 34567765 368889999999999999999997 799999
Q ss_pred CCEEEEEEecch
Q psy16116 512 GIRYIELFRSTT 523 (612)
Q Consensus 512 ggR~IeV~~as~ 523 (612)
+||.|.|..+..
T Consensus 77 ~g~~l~v~~a~~ 88 (97)
T 1nu4_A 77 YDKPMRIQYAKT 88 (97)
T ss_dssp TTEECEEEECSS
T ss_pred CCcEEEEEEccC
Confidence 999999998754
No 159
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.43 E-value=2e-13 Score=131.09 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=73.1
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|||++++++||+++|+.|| .+..|.|+.+.+|+++|||||+|.+.++|++||+ +|+..|+||.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G--------~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~ 158 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFG--------TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 158 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTS--------CCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 467899999999999999999999999 4567999999899999999999999999999997 7999999999
Q ss_pred EEEEecch
Q psy16116 516 IELFRSTT 523 (612)
Q Consensus 516 IeV~~as~ 523 (612)
|.|..+..
T Consensus 159 l~V~~a~~ 166 (177)
T 2f3j_A 159 MDIQLVAS 166 (177)
T ss_dssp CEEEEESS
T ss_pred EEEEEecC
Confidence 99998754
No 160
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.4e-13 Score=124.77 Aligned_cols=75 Identities=21% Similarity=0.239 Sum_probs=65.5
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hC--CcccCC
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KH--KESIGI 513 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~--~~~igg 513 (612)
...+|||+|||++++|+||+++|+.|| .+..|+|+.+ ||||||+|++.++|++|++ ++ +..++|
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG--------~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFG--------KVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTS--------CCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 467899999999999999999999999 4466888854 7999999999999999997 44 468999
Q ss_pred EEEEEEecchH
Q psy16116 514 RYIELFRSTTA 524 (612)
Q Consensus 514 R~IeV~~as~~ 524 (612)
|.|.|..+..+
T Consensus 97 r~l~V~~a~~k 107 (119)
T 2ad9_A 97 QPIYIQFSNHK 107 (119)
T ss_dssp BCCEEEECSSS
T ss_pred eEEEEEEccCC
Confidence 99999987643
No 161
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.43 E-value=2e-13 Score=116.40 Aligned_cols=76 Identities=16% Similarity=0.084 Sum_probs=60.8
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI 516 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I 516 (612)
...+|||+|||+++|+++|+++|+.|| .+.+|+|+.+ +||||||+|.+.++|+++. .....++||.|
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G--------~i~~v~i~~~----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v 76 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYG--------EVVDVFIPKP----FRAFAFVTFADDKVAQSLC-GEDLIIKGISV 76 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTS--------CEEEEECCSS----CCSEEEEEESCHHHHHHHT-TCEEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccC--------CEEEEEEeeC----CCCEEEEEECCHHHHHHHc-CCCcccCCEEE
Confidence 457899999999999999999999999 4567888864 8899999999999999532 22344679999
Q ss_pred EEEecchHH
Q psy16116 517 ELFRSTTAE 525 (612)
Q Consensus 517 eV~~as~~e 525 (612)
.|..+..+.
T Consensus 77 ~v~~a~~k~ 85 (89)
T 3d2w_A 77 HISNAEPKH 85 (89)
T ss_dssp EEEECC---
T ss_pred EEEEcCCCC
Confidence 999886543
No 162
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.8e-13 Score=117.60 Aligned_cols=75 Identities=12% Similarity=0.146 Sum_probs=65.2
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .| . +.++. ++++|||||+|.+.++|++|++ +|+..++||.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G----~v----~-~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELG----SV----P-LRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTT----CC----C-SEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcC----CE----E-EEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 457899999999999999999999999 33 2 45553 4789999999999999999995 7999999999
Q ss_pred EEEEecch
Q psy16116 516 IELFRSTT 523 (612)
Q Consensus 516 IeV~~as~ 523 (612)
|.|..+..
T Consensus 86 l~V~~a~~ 93 (97)
T 2e5j_A 86 LRVALARQ 93 (97)
T ss_dssp CEEEECCC
T ss_pred EEEEEcCC
Confidence 99988753
No 163
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.5e-13 Score=114.10 Aligned_cols=71 Identities=21% Similarity=0.224 Sum_probs=64.2
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .+..|+++ +|||||+|.+.++|++|++ +|+..++||.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYG--------KVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSS--------CEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC--------CEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 457899999999999999999999999 44668876 6899999999999999995 7999999999
Q ss_pred EEEEecc
Q psy16116 516 IELFRST 522 (612)
Q Consensus 516 IeV~~as 522 (612)
|.|..+.
T Consensus 72 l~v~~a~ 78 (90)
T 2dnq_A 72 INVEASK 78 (90)
T ss_dssp CEEECSS
T ss_pred EEEEECC
Confidence 9998765
No 164
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.14 E-value=1.3e-14 Score=128.73 Aligned_cols=80 Identities=21% Similarity=0.221 Sum_probs=71.2
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCcee--------EEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-h
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEG--------VLFVKKP-DGKATGDAFVLFEKEEEADKALS-K 506 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~--------I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~ 506 (612)
...+|||+|||+++++++|+++|+.|| .+.. |+|+.|+ +|+++|||||+|.+.++|++||+ +
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIG--------IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 77 (116)
Confidence 346799999999999999999999999 3345 7888885 69999999999999999999997 7
Q ss_pred CCcccCCEEEEEEecchH
Q psy16116 507 HKESIGIRYIELFRSTTA 524 (612)
Q Consensus 507 ~~~~iggR~IeV~~as~~ 524 (612)
|+..++||.|.|..+..+
T Consensus 78 ~g~~~~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 78 DGKEFSGNPIKVSFATRR 95 (116)
Confidence 999999999999887644
No 165
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.2e-13 Score=120.66 Aligned_cols=80 Identities=29% Similarity=0.387 Sum_probs=66.4
Q ss_pred cceecCCCHHHHHhhHhhcccccC-eee-EEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccch
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQVLG-LGG-VALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDF 418 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~~~-v~~-V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~ 418 (612)
+++|+|||++.++++|+++|...+ +.+ |+|+.+.+|+++|||||+|++.++|++||++++..|+||.|+|..++..++
T Consensus 17 ~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~~~ 96 (104)
T 1wg5_A 17 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 96 (104)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTTTS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHHHH
Confidence 555777777777777777766533 544 888888889999999999999999999999999999999999999887766
Q ss_pred hh
Q psy16116 419 IN 420 (612)
Q Consensus 419 ~~ 420 (612)
.+
T Consensus 97 ~~ 98 (104)
T 1wg5_A 97 RT 98 (104)
T ss_dssp CC
T ss_pred HH
Confidence 54
No 166
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.42 E-value=4.7e-13 Score=122.94 Aligned_cols=80 Identities=9% Similarity=-0.020 Sum_probs=68.6
Q ss_pred cEEEEeCC----CCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCC----HHH----HHHHHH
Q psy16116 439 VIIRMRGL----PYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEK----EEE----ADKALS 505 (612)
Q Consensus 439 ~~VfV~nL----P~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s----~ed----A~kAL~ 505 (612)
..|||+|| ||++++++|++||+.|| .+.++.++.|+ +|+++|||||+|.+ +++ |.+|++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fG--------eV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYG--------EISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTS--------CCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcC--------CeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 35999999 99999999999999999 55789999998 79999999999996 433 888987
Q ss_pred ---hCCcccCCEEEEEEecchHHH
Q psy16116 506 ---KHKESIGIRYIELFRSTTAEV 526 (612)
Q Consensus 506 ---~~~~~iggR~IeV~~as~~e~ 526 (612)
+++..|+||.|+|........
T Consensus 75 ~~~lng~~I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 75 KHESSGCFIMGFKFEVILNKHSIL 98 (136)
T ss_dssp HTTTTCEEETTEEEEEEECCTTHH
T ss_pred HhhhcCCeecCcEEEEEECcccHH
Confidence 499999999999998754433
No 167
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=2.7e-13 Score=123.93 Aligned_cols=78 Identities=10% Similarity=0.182 Sum_probs=67.4
Q ss_pred cccEEEEeCCCCCCCHHHHH----HHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116 437 AQVIIRMRGLPYECTAKQVI----DFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI 511 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLr----efF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i 511 (612)
...+|||+|||+++++++|+ ++|+.|| .| ..|.+ ..+|+++|||||+|.+.++|++|++ +|+..+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G----~I----~~v~i--~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l 97 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQG----DI----LDIVV--DLSDDNSGKAYIVFATQESAQAFVEAFQGYPF 97 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHS----CE----EEEEE--CCCCSSCCCEEEEESSHHHHHHHHHHSTTCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCC----Ce----EEEEe--ccCCCcCCEEEEEECCHHHHHHHHHHHCCCEe
Confidence 45789999999999999976 6999999 44 44655 3578999999999999999999995 799999
Q ss_pred CCEEEEEEecchH
Q psy16116 512 GIRYIELFRSTTA 524 (612)
Q Consensus 512 ggR~IeV~~as~~ 524 (612)
.||.|.|..+..+
T Consensus 98 ~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 98 QGNPLVITFSETP 110 (127)
T ss_dssp TTSCCEEEECCCC
T ss_pred CCCEEEEEEccCc
Confidence 9999999988543
No 168
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=2.7e-13 Score=119.64 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=63.9
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hC--CcccCC
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KH--KESIGI 513 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~--~~~igg 513 (612)
...+|||+|||++++++||+++|+.|| .+..|.++. .||||||+|.+.++|++|++ ++ +..++|
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG--------~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFG--------TICYVMMMP-----FKRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTS--------CEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC--------CEEEEEEEC-----CCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 457899999999999999999999999 445688774 37999999999999999997 44 456999
Q ss_pred EEEEEEecch
Q psy16116 514 RYIELFRSTT 523 (612)
Q Consensus 514 R~IeV~~as~ 523 (612)
|.|.|..+..
T Consensus 81 r~l~V~~a~~ 90 (104)
T 1wex_A 81 QQAFFNYSTS 90 (104)
T ss_dssp SBCEEEECSS
T ss_pred EEEEEEEccC
Confidence 9999998764
No 169
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.5e-13 Score=119.78 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=66.9
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .|.+....+.+. +|+++|||||+|.+.++|++||+ +|+..++||.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G----~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQ----EKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHH----HSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhC----CccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 457899999999999999999999999 331101223333 88999999999999999999996 7999999999
Q ss_pred EEEEecch
Q psy16116 516 IELFRSTT 523 (612)
Q Consensus 516 IeV~~as~ 523 (612)
|.|..+..
T Consensus 97 l~v~~a~~ 104 (115)
T 2cpx_A 97 LVIEFGKN 104 (115)
T ss_dssp CEEEECCC
T ss_pred EEEEEccC
Confidence 99998753
No 170
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=5.4e-13 Score=111.21 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=64.6
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-h-CCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-K-HKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~-~~~~iggR 514 (612)
...+|||+|||+++++++|+++|+.|| .+..|+++. ++|||||+|.+.++|++|++ + ++..++||
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G--------~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFG--------EIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTS--------CEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCC--------CEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 456799999999999999999999999 456788874 57999999999999999998 6 99999999
Q ss_pred EEEEEec
Q psy16116 515 YIELFRS 521 (612)
Q Consensus 515 ~IeV~~a 521 (612)
.|.|..+
T Consensus 78 ~l~v~~a 84 (85)
T 2ytc_A 78 RLNVKWG 84 (85)
T ss_dssp ECCEEEC
T ss_pred EEEEEec
Confidence 9999875
No 171
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.41 E-value=2.9e-13 Score=113.18 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=62.2
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcC----CCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccC
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAG----TENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIG 512 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~----Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~ig 512 (612)
..++|||+|||+++++++|+++|+.| |+.... -+.+..+++. +.+|||||+|.+.++|++|+.+|+..++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~-~~~v~~~~~~-----~~kg~afV~f~~~~~a~~A~~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAP-GNPVLAVQIN-----QDKNFAFLEFRSVDETTQAMAFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSS-SCSEEEEEEC-----SSSSEEEEEESSHHHHHHHGGGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCC-CCcceEEEec-----CCCcEEEEEcCCHHHHHHHHhcCCCEEC
Confidence 34789999999999999999999999 620000 0023456665 3489999999999999999988999999
Q ss_pred CEEEEEEe
Q psy16116 513 IRYIELFR 520 (612)
Q Consensus 513 gR~IeV~~ 520 (612)
||.|.|..
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999864
No 172
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.9e-13 Score=117.87 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=66.6
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...++|||+|||+++++++|+++|+.|| .+..|+|+.+ +|||||+|.+.++|++|++ +++..++||
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G--------~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 89 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFG--------QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGH 89 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHS--------CEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 3567899999999999999999999999 4567888865 7999999999999999995 799999999
Q ss_pred EEEEEecc
Q psy16116 515 YIELFRST 522 (612)
Q Consensus 515 ~IeV~~as 522 (612)
.|.|..+.
T Consensus 90 ~l~v~~a~ 97 (109)
T 1x4g_A 90 VVKCYWGK 97 (109)
T ss_dssp ECEEECCC
T ss_pred EEEEEecC
Confidence 99998765
No 173
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.41 E-value=6.2e-13 Score=114.91 Aligned_cols=71 Identities=13% Similarity=0.152 Sum_probs=64.0
Q ss_pred cccEEEEeCCCC-CCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPY-ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~-s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+ ++++++|+++|+.|| .+..|++ ++|||||+|.+.++|++|++ +|+..++||
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G--------~v~~v~i-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYG--------HIMQINI-------KNAFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGS--------CEEEEEE-------CSSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcC--------CEEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 567899999999 999999999999999 3456777 37999999999999999997 899999999
Q ss_pred EEEEEecc
Q psy16116 515 YIELFRST 522 (612)
Q Consensus 515 ~IeV~~as 522 (612)
.|.|..+.
T Consensus 86 ~l~V~~a~ 93 (97)
T 2xnq_A 86 KLILEVSS 93 (97)
T ss_dssp ECEEEECC
T ss_pred EEEEEecC
Confidence 99998875
No 174
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.41 E-value=1.1e-13 Score=128.09 Aligned_cols=81 Identities=25% Similarity=0.344 Sum_probs=68.1
Q ss_pred cceecCCCHHHHHhhHhhcccc-cC---eeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LG---LGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~---v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+|||++.++++|+++|.. +. +.+|+|+++++|+++|||||+|++.++|++||++|+..|+||.|+|..++.+
T Consensus 46 ~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 46 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECCHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECChH
Confidence 4557777777777777776665 33 6789999999999999999999999999999999999999999999998877
Q ss_pred chhhc
Q psy16116 417 DFINV 421 (612)
Q Consensus 417 e~~~~ 421 (612)
++.+.
T Consensus 126 e~~~~ 130 (136)
T 2hgl_A 126 EMDWV 130 (136)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 175
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=5e-13 Score=114.66 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=64.9
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccC--C
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIG--I 513 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~ig--g 513 (612)
...+|||+|||+++++++|+++|+.|| .+..|.+..+ +|||||+|.+.++|++|++ +|+..++ |
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g 82 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFG--------SIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPD 82 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTS--------CEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCC
Confidence 456799999999999999999999999 4466877643 7899999999999999997 7999999 9
Q ss_pred EEEEEEecc
Q psy16116 514 RYIELFRST 522 (612)
Q Consensus 514 R~IeV~~as 522 (612)
|.|.|..+.
T Consensus 83 ~~l~V~~a~ 91 (97)
T 1why_A 83 RRLRVDFAK 91 (97)
T ss_dssp CBCEEEECC
T ss_pred cEEEEEECC
Confidence 999998875
No 176
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.40 E-value=1.3e-13 Score=123.39 Aligned_cols=80 Identities=23% Similarity=0.365 Sum_probs=66.9
Q ss_pred cceecCCCHHHHHhhHhhcccccC----eeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQVLG----LGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~~~----v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+|||++.++++|++||...+ +.+|+|+++++|+++|||||+|++.++|++||++|+..|+||.|+|..++.+
T Consensus 19 ~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 19 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEECHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCHH
Confidence 455777777777666666665422 6899999999999999999999999999999999999999999999998877
Q ss_pred chhh
Q psy16116 417 DFIN 420 (612)
Q Consensus 417 e~~~ 420 (612)
++.+
T Consensus 99 ~~~~ 102 (118)
T 2db1_A 99 EMDW 102 (118)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 177
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=3e-13 Score=116.43 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=65.7
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .+..|++.. .+|||||+|.+.++|++|++ +|+..++||.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~~~~-----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYG--------KAGEVFIHK-----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTC--------CCSEEEEET-----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcC--------CeEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 457899999999999999999999999 345688873 47999999999999999995 7999999999
Q ss_pred EEEEecch
Q psy16116 516 IELFRSTT 523 (612)
Q Consensus 516 IeV~~as~ 523 (612)
|.|..+..
T Consensus 81 l~v~~a~~ 88 (99)
T 2cpj_A 81 LRVRFACH 88 (99)
T ss_dssp CEEEESSC
T ss_pred EEEEEcCC
Confidence 99988753
No 178
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.39 E-value=6.4e-13 Score=117.30 Aligned_cols=73 Identities=25% Similarity=0.309 Sum_probs=65.5
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
....+|||+|||+++++++|+++|+.|| .+..|.++ +|||||+|.+.++|++|++ +|+..++||
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G--------~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFG--------PMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTS--------CCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC--------CEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3567899999999999999999999999 34568876 7999999999999999996 799999999
Q ss_pred EEEEEecch
Q psy16116 515 YIELFRSTT 523 (612)
Q Consensus 515 ~IeV~~as~ 523 (612)
.|.|..+..
T Consensus 94 ~l~V~~a~~ 102 (108)
T 2jvo_A 94 PLEVVYSKL 102 (108)
T ss_dssp ECEEESCSC
T ss_pred EEEEEEecC
Confidence 999988753
No 179
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.2e-12 Score=112.61 Aligned_cols=71 Identities=21% Similarity=0.181 Sum_probs=62.7
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcC--CCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAG--TENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGI 513 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~--Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~igg 513 (612)
...+|||+|||+++++++|+++|+.| | .+..|++ .+|||||+|.+.++|++||+ +|+..++|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g--------~v~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPG--------AVERVKK-------IRDYAFVHFSNREDAVEAMKALNGKVLDG 78 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTT--------CEEEEEE-------CSSEEEEEESSHHHHHHHHHHHSSEEETT
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCc--------ceEEEEE-------eCCeEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 45789999999999999999999999 6 3345654 36899999999999999997 89999999
Q ss_pred EEEEEEecc
Q psy16116 514 RYIELFRST 522 (612)
Q Consensus 514 R~IeV~~as 522 (612)
|.|.|..+.
T Consensus 79 ~~l~v~~a~ 87 (99)
T 2cpd_A 79 SPIEVTLAK 87 (99)
T ss_dssp EEEEEECCC
T ss_pred cEEEEEECC
Confidence 999998765
No 180
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=6.5e-13 Score=112.41 Aligned_cols=71 Identities=24% Similarity=0.250 Sum_probs=63.7
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .+..|+++ +|||||+|.+.++|++|++ +|+..++||.
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 72 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRG--------RVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKR 72 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHS--------CEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCC--------CEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 456799999999999999999999999 44668876 4599999999999999997 7999999999
Q ss_pred EEEEecc
Q psy16116 516 IELFRST 522 (612)
Q Consensus 516 IeV~~as 522 (612)
|.|..+.
T Consensus 73 l~v~~a~ 79 (90)
T 2dnp_A 73 INVELST 79 (90)
T ss_dssp CEEEESC
T ss_pred EEEEECC
Confidence 9999875
No 181
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=5.5e-13 Score=113.89 Aligned_cols=72 Identities=21% Similarity=0.235 Sum_probs=62.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYI 516 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I 516 (612)
..+|||+|||+++++++|+++|+.|| .| ..| +.+. +|+ ||||+|.+.++|++||++|+..++||.|
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G----~v----~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l 74 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFG----PV----ASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRL 74 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTS----CE----EEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcC----Ce----EEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEE
Confidence 46899999999999999999999999 33 445 4454 555 9999999999999999999999999999
Q ss_pred EEEecc
Q psy16116 517 ELFRST 522 (612)
Q Consensus 517 eV~~as 522 (612)
.|..+.
T Consensus 75 ~V~~a~ 80 (94)
T 2e5g_A 75 RVRPRE 80 (94)
T ss_dssp CCBCSC
T ss_pred EEEECC
Confidence 997553
No 182
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=4.1e-13 Score=114.14 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=62.9
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCC-cccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHK-ESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~-~~iggR 514 (612)
...+|||+|||+++++++|+++|+.|| .| +..+.+ +++|||||+|.+.++|++|++ +|+ ..++||
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G----~v---v~~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 73 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRK----LP---LAGQVL------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGK 73 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTT----CC---CSSCEE------EETTEEEECCSCHHHHHHHHHHHTTTCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcC----Cc---eEEEEE------cCCCEEEEEECCHHHHHHHHHHccCCeeECCE
Confidence 346799999999999999999999999 42 233444 368999999999999999996 799 999999
Q ss_pred EEEEEecc
Q psy16116 515 YIELFRST 522 (612)
Q Consensus 515 ~IeV~~as 522 (612)
.|.|..+.
T Consensus 74 ~l~v~~a~ 81 (93)
T 2cqh_A 74 IMEVDYSV 81 (93)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcc
Confidence 99999875
No 183
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=5.2e-13 Score=118.29 Aligned_cols=74 Identities=20% Similarity=0.128 Sum_probs=65.6
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
..++|||+|||+++++++|+++|+.|| .+..|.|+ +++|||||+|.+.++|++|++ +|+..++||.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G--------~i~~v~i~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 75 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFG--------SLGRVLLP-----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVP 75 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTS--------CEEEEECC-----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEe-----CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence 356899999999999999999999999 34567765 377999999999999999996 7999999999
Q ss_pred EEEEecch
Q psy16116 516 IELFRSTT 523 (612)
Q Consensus 516 IeV~~as~ 523 (612)
|.|..+..
T Consensus 76 l~V~~a~~ 83 (111)
T 1whx_A 76 LYLEWAPI 83 (111)
T ss_dssp CEEEEEET
T ss_pred EEEEECCC
Confidence 99998754
No 184
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=3.1e-13 Score=119.14 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=63.8
Q ss_pred cccEEEEeCCCC-CCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hC--CcccC
Q psy16116 437 AQVIIRMRGLPY-ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KH--KESIG 512 (612)
Q Consensus 437 ~~~~VfV~nLP~-s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~--~~~ig 512 (612)
...+|||+|||+ +++++||+++|+.|| .+..|+|+.+ +|||||+|++.++|++|++ ++ +..|+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG--------~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFG--------VISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGS--------CEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcC--------CEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 467899999999 999999999999999 4567888753 5899999999999999996 45 45699
Q ss_pred CEEEEEEecc
Q psy16116 513 IRYIELFRST 522 (612)
Q Consensus 513 gR~IeV~~as 522 (612)
||.|.|..+.
T Consensus 81 Gr~l~V~~a~ 90 (102)
T 1x4d_A 81 GKPVRVHLSQ 90 (102)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEECC
Confidence 9999999875
No 185
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.6e-12 Score=110.44 Aligned_cols=71 Identities=21% Similarity=0.213 Sum_probs=63.8
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .+..|+++ +|||||+|.+.++|++|++ +|+..++||.
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYG--------PVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTS--------CCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 457899999999999999999999999 34568876 4499999999999999996 7999999999
Q ss_pred EEEEecc
Q psy16116 516 IELFRST 522 (612)
Q Consensus 516 IeV~~as 522 (612)
|.|..+.
T Consensus 74 l~V~~a~ 80 (92)
T 2dgt_A 74 MHVQLST 80 (92)
T ss_dssp EEEEESS
T ss_pred EEEEEcc
Confidence 9999875
No 186
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.38 E-value=4.8e-13 Score=122.88 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=66.6
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccC----ceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDG----EEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI 511 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~----v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i 511 (612)
...+|||+|||+++++++|+++|+.|| .|... +..|++ ..+|+++|||||+|.+.++|.+||+ +|+..+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G----~i~~~~~~~~~di~~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYV----DFSSETQRIMFDIRL--MKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGC----CTTCHHHHHHCEEEE--EEETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhC----CcccccccceeeEEe--ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 457899999999999999999999999 33210 011333 2479999999999999999999997 899999
Q ss_pred CCEEEEEEecc
Q psy16116 512 GIRYIELFRST 522 (612)
Q Consensus 512 ggR~IeV~~as 522 (612)
+||.|.|..+.
T Consensus 118 ~g~~l~V~~a~ 128 (143)
T 3egn_A 118 FGKPMVVQFAR 128 (143)
T ss_dssp TTEECEEEECC
T ss_pred CCcEEEEEECC
Confidence 99999999874
No 187
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.38 E-value=7.7e-13 Score=114.84 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=64.1
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|||+++++++|+++|+.|| .+..|+++ +|||||+|.+.++|++||+ +|+..|+||.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G--------~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFG--------KLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHS--------CEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 346799999999999999999999999 34567775 5699999999999999997 7999999999
Q ss_pred EEEEecch
Q psy16116 516 IELFRSTT 523 (612)
Q Consensus 516 IeV~~as~ 523 (612)
|.|..+..
T Consensus 75 l~v~~a~~ 82 (103)
T 2dgu_A 75 IEIVFAKP 82 (103)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCC
Confidence 99998754
No 188
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.38 E-value=7.3e-13 Score=111.91 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=63.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI 516 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I 516 (612)
.++|||+|||++++++||+++|+.|. | ..+++. +++|||||+|.+.++|++|++ +|+..++||.|
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~~-----v----~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 70 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDYD-----L----KYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDL 70 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSSC-----C----CCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhCC-----e----EEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 46799999999999999999999985 2 346663 789999999999999999997 89999999999
Q ss_pred EEEecc
Q psy16116 517 ELFRST 522 (612)
Q Consensus 517 eV~~as 522 (612)
.|..+.
T Consensus 71 ~V~~a~ 76 (88)
T 1wg1_A 71 IVQLQP 76 (88)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 998864
No 189
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=6.9e-13 Score=117.66 Aligned_cols=75 Identities=17% Similarity=0.153 Sum_probs=61.5
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-C---CCceeEEEEEeCCHHHHHHHHHhCCcccC
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-D---GKATGDAFVLFEKEEEADKALSKHKESIG 512 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~---GrskG~AFV~F~s~edA~kAL~~~~~~ig 512 (612)
..++|||+|||+++++++|+++|+.|| .+. +.++.+. + |+++|||||+|.+.++|++||+.- ..++
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G--------~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~ 76 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFG--------PLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEED 76 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTC--------CCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEET
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcC--------CEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcC
Confidence 346799999999999999999999999 334 6777665 3 799999999999999999999742 2377
Q ss_pred CEEEEEEec
Q psy16116 513 IRYIELFRS 521 (612)
Q Consensus 513 gR~IeV~~a 521 (612)
|+.+.+..+
T Consensus 77 G~~~~~~~~ 85 (114)
T 2dnl_A 77 GKLYLCVSS 85 (114)
T ss_dssp TEEEEEECC
T ss_pred CcEEEeccC
Confidence 777776543
No 190
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=5.1e-13 Score=119.84 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=64.4
Q ss_pred CcccEEEEeCCCCC-CCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-h--CCccc
Q psy16116 436 GAQVIIRMRGLPYE-CTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-K--HKESI 511 (612)
Q Consensus 436 ~~~~~VfV~nLP~s-~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~--~~~~i 511 (612)
....+|||+|||++ ++++||+++|+.|| .+..|+|+ ++||||||+|.+.++|++|++ + ++..|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG--------~V~~v~i~-----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l 89 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYG--------KIKNYILM-----RMKSQAFIEMETREDAMAMVDHCLKKALWF 89 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTS--------CCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcC--------CEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 35678999999998 99999999999999 34568886 468999999999999999996 4 45679
Q ss_pred CCEEEEEEecc
Q psy16116 512 GIRYIELFRST 522 (612)
Q Consensus 512 ggR~IeV~~as 522 (612)
+||.|.|..+.
T Consensus 90 ~Gr~l~V~~a~ 100 (112)
T 1x4f_A 90 QGRCVKVDLSE 100 (112)
T ss_dssp SSSCCEEEEEC
T ss_pred CCEEEEEEECc
Confidence 99999999875
No 191
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.35 E-value=9.1e-13 Score=113.10 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=63.6
Q ss_pred cccEEEEeCCCC-CCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPY-ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~-s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+ ++++++|+++|+.|| .+..|+|. +|||||+|.+.++|++|++ +|+..++||
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G--------~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYG--------HIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGK 73 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTC--------CCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcC--------CEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 457899999999 999999999999999 34567773 7999999999999999997 799999999
Q ss_pred EEEEEecc
Q psy16116 515 YIELFRST 522 (612)
Q Consensus 515 ~IeV~~as 522 (612)
.|.|..+.
T Consensus 74 ~l~V~~a~ 81 (96)
T 2kvi_A 74 KLILEVSS 81 (96)
T ss_dssp TBCEEEEE
T ss_pred EEEEEEcC
Confidence 99998874
No 192
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.35 E-value=6.8e-13 Score=118.14 Aligned_cols=73 Identities=14% Similarity=0.136 Sum_probs=62.6
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
..++|||+|||++++++||+++|+.|| .+..|.|+.+ |||||+|.+.++|++||+ +|+..|+||.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAG--------DVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGS--------CEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 357799999999999999999999999 4466888765 999999999999999997 7999999987
Q ss_pred -----EEEEecch
Q psy16116 516 -----IELFRSTT 523 (612)
Q Consensus 516 -----IeV~~as~ 523 (612)
|+|.....
T Consensus 81 ~~~~~i~v~~~~~ 93 (115)
T 3beg_B 81 GETAYIRVKVDGP 93 (115)
T ss_dssp SCCCBCEEEECC-
T ss_pred eeeEEEEeccCCC
Confidence 77776554
No 193
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=9.8e-13 Score=111.36 Aligned_cols=76 Identities=20% Similarity=0.278 Sum_probs=62.3
Q ss_pred cceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+|||++.++++|+++|....+.+|+|+++.+|+++|||||+|.+.++|++||++|+..|+||.|+|..+..+
T Consensus 12 ~l~v~nLp~~~t~~~l~~~F~~~~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 12 TVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp EEEEECCCSSCCHHHHHHHHTTSCCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESSC
T ss_pred EEEEECCCCCCCHHHHHHHHhhCCceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCcC
Confidence 4456666666666666655554458899999998899999999999999999999999999999999999887653
No 194
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.34 E-value=6.6e-13 Score=116.51 Aligned_cols=80 Identities=24% Similarity=0.374 Sum_probs=63.4
Q ss_pred cceecCCCHHHHHhhHhhcccc----cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV----LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~----~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+|||++.++++|++||.. +.+.+|+|+++++|+++|||||+|.+.++|++||++++..|+||.|+|..+..+
T Consensus 13 ~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 13 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNE 92 (107)
T ss_dssp EEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECCHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECCHH
Confidence 3445555555555555554443 336899999999999999999999999999999999999999999999998876
Q ss_pred chhh
Q psy16116 417 DFIN 420 (612)
Q Consensus 417 e~~~ 420 (612)
++.+
T Consensus 93 ~~~~ 96 (107)
T 2lmi_A 93 DVDA 96 (107)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 195
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.34 E-value=1.5e-12 Score=114.29 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=63.7
Q ss_pred cccEEEEeCCCCC-CCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYE-CTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s-~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||++ +++++|+++|+.|| .+..|.| ++|||||+|.+.++|++||+ +|+..++||
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G--------~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 90 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYG--------RVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQ 90 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGS--------CCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCC--------CeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3468999999999 99999999999999 3456777 68999999999999999995 799999999
Q ss_pred EEEEEecc
Q psy16116 515 YIELFRST 522 (612)
Q Consensus 515 ~IeV~~as 522 (612)
.|.|..+.
T Consensus 91 ~l~V~~a~ 98 (110)
T 1wf1_A 91 TLDINMAG 98 (110)
T ss_dssp ECCEEESC
T ss_pred EEEEEECC
Confidence 99998864
No 196
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=6.3e-13 Score=112.02 Aligned_cols=73 Identities=15% Similarity=0.101 Sum_probs=61.3
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI 516 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I 516 (612)
..++|||+|||+++++++|+++|+.|| .+..|+|+.+ ++|||||+|.+.++|++|+.. ...++|+.|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G--------~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l 70 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYG--------DVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE-DLIIKGISV 70 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTS--------CCCEEECCSS----CCSCCEEECSCHHHHHHTTTC-EEEETTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcC--------CeeEEEEecC----CCCEEEEEECCHHHHHHHhcC-CceeCCEEE
Confidence 346899999999999999999999999 3456888754 789999999999999876543 455699999
Q ss_pred EEEecc
Q psy16116 517 ELFRST 522 (612)
Q Consensus 517 eV~~as 522 (612)
+|..+.
T Consensus 71 ~v~~a~ 76 (88)
T 1wf0_A 71 HISNAE 76 (88)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 998765
No 197
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=5.9e-13 Score=118.11 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=67.4
Q ss_pred ccceecCCCHHHHHhhHhhcccc-cCe-eeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccc
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQV-LGL-GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGED 417 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~-~~v-~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e 417 (612)
.+|+|+|||++.++++|+++|.. +.+ .+|+|+++++|+++|||||+|.+.++|++||++|+..|+||.|.|..+..++
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 16 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp CEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECHHH
T ss_pred cEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCHHH
Confidence 35567777777777777777665 335 6799999999999999999999999999999999999999999999888765
Q ss_pred hhh
Q psy16116 418 FIN 420 (612)
Q Consensus 418 ~~~ 420 (612)
...
T Consensus 96 ~~~ 98 (114)
T 2cpy_A 96 MRE 98 (114)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 198
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.34 E-value=5.4e-12 Score=111.41 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=71.3
Q ss_pred cccEEEEeCCCC-----CCCHHHHHHHHhcCCCCccccccCceeEEEeeCC--CCCceeEEEEEeCCHHHHHHHHH-hCC
Q psy16116 437 AQVIIRMRGLPY-----ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP--DGKATGDAFVLFEKEEEADKALS-KHK 508 (612)
Q Consensus 437 ~~~~VfV~nLP~-----s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~--~GrskG~AFV~F~s~edA~kAL~-~~~ 508 (612)
.+.+|+|+||.. +-+++||++.|++|| .+.+|+|+.++ +|+++|||||+|.+.++|.+|++ +||
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G--------~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG 78 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYG--------KVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNG 78 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGS--------CEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcC--------CEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCC
Confidence 457899999973 347899999999999 45779999886 36899999999999999999996 899
Q ss_pred cccCCEEEEEEecchHHHH
Q psy16116 509 ESIGIRYIELFRSTTAEVQ 527 (612)
Q Consensus 509 ~~iggR~IeV~~as~~e~~ 527 (612)
..++||.|.|..+....+.
T Consensus 79 ~~~~Gr~i~v~~a~~~~f~ 97 (105)
T 2pe8_A 79 RYFGGRVVKACFYNLDKFR 97 (105)
T ss_dssp CEETTEECEEEECCHHHHH
T ss_pred CEECCcEEEEEEcCHHHhh
Confidence 9999999999999876543
No 199
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.32 E-value=2.6e-13 Score=125.96 Aligned_cols=78 Identities=23% Similarity=0.291 Sum_probs=68.4
Q ss_pred cceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccch
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDF 418 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~ 418 (612)
+|+|+|||++.++++|+++|...++.+|+|+++++|+++|||||+|++.++|++||++|+..|++|.|+|..++..+.
T Consensus 48 ~lfV~nLp~~~te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 48 CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CEECCSCCTTCCHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCC
Confidence 556888888888888888887755779999999999999999999999999999999999999999999988876543
No 200
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.4e-12 Score=111.24 Aligned_cols=77 Identities=10% Similarity=0.044 Sum_probs=66.1
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEE-EeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVL-FVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR 514 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~-i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR 514 (612)
...+|||+|||+++++++|+++|+.|| .+..|+ |+.++. +|.|||+|.+.++|++|++ +|+..++||
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~ 82 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYG--------VVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENF 82 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHS--------CEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcC--------CeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 356799999999999999999999999 456684 776643 3449999999999999996 899999999
Q ss_pred EEEEEecchH
Q psy16116 515 YIELFRSTTA 524 (612)
Q Consensus 515 ~IeV~~as~~ 524 (612)
.|.|..+..+
T Consensus 83 ~l~V~~a~~~ 92 (96)
T 2e44_A 83 TLKVAYIPDE 92 (96)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEEcCcc
Confidence 9999988654
No 201
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=4.8e-12 Score=108.65 Aligned_cols=71 Identities=17% Similarity=0.130 Sum_probs=62.9
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|| ++++++|+++|+.|| .+..|.|. +++|||||+|.+.++|++||+ +|+..++||.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G--------~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 78 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFG--------NIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQ 78 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTS--------CEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCC--------CEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 4578999995 999999999999999 34567773 788999999999999999995 7999999999
Q ss_pred EEEEecc
Q psy16116 516 IELFRST 522 (612)
Q Consensus 516 IeV~~as 522 (612)
|.|..+.
T Consensus 79 l~v~~a~ 85 (97)
T 1x5p_A 79 LKVNIAR 85 (97)
T ss_dssp EEEECCS
T ss_pred EEEEECC
Confidence 9998765
No 202
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.28 E-value=6.2e-12 Score=136.91 Aligned_cols=79 Identities=19% Similarity=0.208 Sum_probs=72.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
..+|||+|||+.+|+++|+++|+.|| .+..|.|+.+. +|+++|||||+|.+.++|.+||+ +|+..|+|+.
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G--------~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~ 173 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYG--------PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR 173 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC--------CeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEE
Confidence 46899999999999999999999999 45679999886 89999999999999999999995 7999999999
Q ss_pred EEEEecchH
Q psy16116 516 IELFRSTTA 524 (612)
Q Consensus 516 IeV~~as~~ 524 (612)
|.|..+...
T Consensus 174 i~V~~a~~~ 182 (437)
T 3pgw_S 174 VLVDVERGR 182 (437)
T ss_pred EEEEEeCCC
Confidence 999998644
No 203
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.28 E-value=3.3e-12 Score=111.12 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=60.0
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~ 414 (612)
+++|+|||++.++++|+++|.. +.+.+|++++++ +|+++|||||+|.+.++|++|++ +|+..|+||.|.|..+.
T Consensus 21 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 4456666666666666665554 458999999986 48999999999999999999996 79999999999997664
No 204
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.27 E-value=7.7e-12 Score=119.30 Aligned_cols=76 Identities=14% Similarity=0.051 Sum_probs=65.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCC--E
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGI--R 514 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~igg--R 514 (612)
..+|||+||+|++++++|+++|+.|| .+.+|+|..+ +++|||||+|.+.++|++|++ +||..|.| |
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG--------~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~ 114 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFG--------TVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACC 114 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHS--------CEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcC--------CEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCc
Confidence 45699999999999999999999999 4567888643 367999999999999999996 79999955 9
Q ss_pred EEEEEecchH
Q psy16116 515 YIELFRSTTA 524 (612)
Q Consensus 515 ~IeV~~as~~ 524 (612)
.|+|..+..+
T Consensus 115 ~L~V~~Ak~~ 124 (164)
T 1sjr_A 115 TLRIDFSKLT 124 (164)
T ss_dssp CEEEEECSSS
T ss_pred EEEEEEecCC
Confidence 9999988654
No 205
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=5e-12 Score=113.76 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=62.4
Q ss_pred cccEEEE--eCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc--
Q psy16116 437 AQVIIRM--RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI-- 511 (612)
Q Consensus 437 ~~~~VfV--~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i-- 511 (612)
...+||| +||++++++++|+++|++|| .++.|.|+. .||||||+|.+.++|++|++ +|+..+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG--------~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 90 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCG--------LVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVD 90 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHS--------CEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcC--------CeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEcc
Confidence 4567999 66999999999999999999 345677653 37999999999999999996 899988
Q ss_pred ---CCEEEEEEecc
Q psy16116 512 ---GIRYIELFRST 522 (612)
Q Consensus 512 ---ggR~IeV~~as 522 (612)
+|+.|.|..+.
T Consensus 91 ~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 91 DLGQKITLYLNFVE 104 (114)
T ss_dssp TTSCEEECEEEEES
T ss_pred ccCCCcEEEEEecc
Confidence 78999987764
No 206
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.5e-12 Score=117.08 Aligned_cols=80 Identities=18% Similarity=0.329 Sum_probs=64.7
Q ss_pred ccceecCCCHHHHHhhHhhcccc-cCeee-EEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccc
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGG-VALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGED 417 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~-V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e 417 (612)
.+|+|+|||++.++++|+++|.. +.+.+ +.+..+.+|+++|||||+|.+.++|++||++|+..|+||.|+|..+..++
T Consensus 26 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~~ 105 (124)
T 1wel_A 26 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKG 105 (124)
T ss_dssp CEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCHHH
Confidence 45667777777777777776665 33444 56666678999999999999999999999999999999999999988766
Q ss_pred hh
Q psy16116 418 FI 419 (612)
Q Consensus 418 ~~ 419 (612)
+.
T Consensus 106 ~~ 107 (124)
T 1wel_A 106 ML 107 (124)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 207
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.26 E-value=5.9e-12 Score=111.73 Aligned_cols=76 Identities=12% Similarity=-0.016 Sum_probs=62.1
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+||+++.++++|+++|.. +.+.+|+|++|+. |+++|||||+|++.++|++|++ +|+..++||.|.|..+...
T Consensus 8 ~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 8 EVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4556666666666666665554 4589999999875 8999999999999999999997 8999999999999877543
No 208
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=4e-12 Score=111.63 Aligned_cols=74 Identities=8% Similarity=0.026 Sum_probs=61.7
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccC
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~ 414 (612)
+++|+|||++.++++|+++|.. +.+.+|+|+++++|+++|||||+|++.++|++||++++..++||.|.|....
T Consensus 13 ~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 13 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp CEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred EEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 5556677776666666666654 4589999999988999999999999999999999999999999999997543
No 209
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.25 E-value=7.1e-12 Score=104.99 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=57.8
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA 413 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s 413 (612)
+++|+|||++.++++|+++|.. +.+.+|+++.++. |+++|||||+|.+.++|++|++.++..|+||.|+|..+
T Consensus 13 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 13 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4445566665555555555543 4588999998864 89999999999999999999999999999999999653
No 210
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.25 E-value=3e-12 Score=108.58 Aligned_cols=75 Identities=12% Similarity=0.042 Sum_probs=59.7
Q ss_pred cceecCCCHHHHHhhHhhcccc-c--CeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-L--GLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~--~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+++|+||+++.++++|+++|.. + .+.+|+++.++ +|+++|||||+|.+.++|++|++ +|+..++||.|.|..+..
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~ 82 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNK 82 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC--
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCC
Confidence 4667777777766666666654 3 48899999986 68999999999999999999995 899999999999987754
No 211
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.25 E-value=5.2e-12 Score=111.44 Aligned_cols=98 Identities=12% Similarity=0.037 Sum_probs=75.6
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccch
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDF 418 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~ 418 (612)
+++|+|||++.++++|+++|.. +.+.+|.++. +|+++|||||+|.+.++|++|++ +|+..++|+.|.|..+.....
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 87 (115)
T 3lqv_A 10 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN--TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRA 87 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEC--STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChh
Confidence 4556666666655555555544 4588888875 46679999999999999999998 899999999999977654311
Q ss_pred hhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCC
Q psy16116 419 INVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTE 464 (612)
Q Consensus 419 ~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi 464 (612)
. ++++...++++|+++|+.+|+
T Consensus 88 ~------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 88 F------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp T------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred h------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 0 456677889999999999994
No 212
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.24 E-value=2.2e-12 Score=110.24 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=58.8
Q ss_pred cceecCCCHHHHHhhHhhcccc-c-CeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHh--CCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-L-GLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKR--HKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~-~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~--ng~~IggR~IeV~~s~~ 415 (612)
+|+|+|||++.++++|+++|.. + .+.+|+|++++ +|+++|||||+|.+.++|++||+. ++..++||.|.|..+..
T Consensus 3 ~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~ 82 (91)
T 2lxi_A 3 IVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDP 82 (91)
T ss_dssp EEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCC
Confidence 4556667766666666665554 3 47889999886 489999999999999999999974 34579999999987754
No 213
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.24 E-value=5.5e-12 Score=109.39 Aligned_cols=77 Identities=10% Similarity=0.077 Sum_probs=66.8
Q ss_pred cccceecCCCH------HHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCc-eEE
Q psy16116 339 ALCPLVQNIWL------SLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDK-RYI 408 (612)
Q Consensus 339 ~l~vlV~nLp~------~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~Igg-R~I 408 (612)
+.+|+|+|||+ +.++++|+++|.. +.+.+|+|++++. |+++|||||+|.+.++|++||+ +|+..++| |.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 34677888998 8888888877765 5689999999886 9999999999999999999996 89999999 999
Q ss_pred EEeccCc
Q psy16116 409 EVTKANG 415 (612)
Q Consensus 409 eV~~s~~ 415 (612)
.|..+..
T Consensus 86 ~V~~a~~ 92 (100)
T 3ns6_A 86 FLYTMKD 92 (100)
T ss_dssp EEEESHH
T ss_pred EEEECch
Confidence 9987754
No 214
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.24 E-value=3.1e-12 Score=104.29 Aligned_cols=72 Identities=18% Similarity=0.264 Sum_probs=56.5
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA 413 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s 413 (612)
++|+|||.+.++++++++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++|+++++..|+||.|.|..+
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 345555555555555544443 348889998887 689999999999999999999999999999999998653
No 215
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.23 E-value=9.4e-12 Score=107.96 Aligned_cols=71 Identities=18% Similarity=0.170 Sum_probs=54.6
Q ss_pred ecCCCHHHHHhhHhhccccc---CeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCC----ccCceEEEEeccC
Q psy16116 344 VQNIWLSLLLNTIPGYEQVL---GLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKH----HIDKRYIEVTKAN 414 (612)
Q Consensus 344 V~nLp~~~~e~~fkeff~~~---~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~----~IggR~IeV~~s~ 414 (612)
|+|||++.++++|+++|... .+.+|++++|+. |+++|||||+|.+.++|++||+ +|+. .|+||.|.|..+.
T Consensus 14 V~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 14 LRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp EESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred EeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence 55555555555555555432 367899999874 8999999999999999999997 6665 5899999997764
No 216
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.23 E-value=2.8e-11 Score=111.34 Aligned_cols=75 Identities=15% Similarity=0.045 Sum_probs=64.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeE-EEEEeCCHHHHHHHHH-hCCcccCC--
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGD-AFVLFEKEEEADKALS-KHKESIGI-- 513 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~-AFV~F~s~edA~kAL~-~~~~~igg-- 513 (612)
-..|||+||+|.+|+++|+++|+.|| .+.+|++..+ ++|| |||+|.+.++|++|++ +||..|.|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG--------~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~ 95 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFG--------TVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNAC 95 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSS--------CEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcC--------CEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCC
Confidence 35688999999999999999999999 4567887753 3688 9999999999999996 89999987
Q ss_pred EEEEEEecchH
Q psy16116 514 RYIELFRSTTA 524 (612)
Q Consensus 514 R~IeV~~as~~ 524 (612)
+.|+|..+...
T Consensus 96 ~~LrI~~ak~~ 106 (130)
T 3zzy_A 96 CTLRIDFSKLT 106 (130)
T ss_dssp EEEEEEECSCS
T ss_pred cEEEEEecCCC
Confidence 89999887643
No 217
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.22 E-value=1.1e-11 Score=107.31 Aligned_cols=77 Identities=19% Similarity=0.187 Sum_probs=65.8
Q ss_pred ccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~ 416 (612)
.+++|+|||++.++++|+++|...++.+|+|++++. |+++|||||+|.+.++|++||++++..|+||.|.|..+...
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dng_A 16 YTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGR 93 (103)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCC
Confidence 356678888887777787777665689999999875 89999999999999999999998999999999999877653
No 218
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.8e-11 Score=105.28 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=59.9
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+++|+|||.+.++++|+++|.. +.+.+|+++.+++|+++|||||+|.+.++|++|++ +++..|+|+.|.|..+..
T Consensus 19 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 19 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp CEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 3445556555555555555543 45889999999999999999999999999999995 799999999999987754
No 219
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=103.48 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=60.6
Q ss_pred ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
.+++|+|||.+.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++|++ +++..++|+.|.|..+..
T Consensus 7 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 7 FHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 35556666666666666655554 458899999985 68999999999999999999997 799999999999977653
No 220
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=104.85 Aligned_cols=74 Identities=18% Similarity=0.122 Sum_probs=59.2
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~ 414 (612)
+++|+|||++.++++|+++|.. +.+.+|+|..+++|+++|||||+|.+.++|++|++ +|+..++||.|.|..+.
T Consensus 18 ~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 18 TVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 4445556555555555554443 45889999999999999999999999999999998 89999999999997664
No 221
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.22 E-value=1.9e-11 Score=104.75 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=60.7
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHH-HhCCCccCceEEEEeccCccc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMAL-KRHKHHIDKRYIEVTKANGED 417 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL-~~ng~~IggR~IeV~~s~~~e 417 (612)
+++|+|||.+.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++|| .+|+..|+|+.|.|..+....
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 89 (99)
T 1whw_A 10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK 89 (99)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCc
Confidence 4445566655555555555443 358899999887 7999999999999999999999 589999999999998876643
No 222
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=2.4e-11 Score=104.35 Aligned_cols=76 Identities=22% Similarity=0.190 Sum_probs=59.9
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+||+.+.++++|+++|.. +.+.+|+|+.++ +|+++|||||+|.+.++|++||++++..|+|+.|.|..+...
T Consensus 12 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~ 89 (99)
T 2dgs_A 12 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 89 (99)
T ss_dssp EEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 3445555555555555555443 458899999886 589999999999999999999999999999999999887654
No 223
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=1.4e-11 Score=106.84 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=65.4
Q ss_pred ccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCC--CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAF--GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~--GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~ 416 (612)
.+++|+||+++.++++|+++|...++.+|+|+.+++ |+++|||||+|.+.++|++||.+++..|+|+.|.|..+...
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 94 (104)
T 1wi8_A 16 YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQA 94 (104)
T ss_dssp EEEEEESCCSSCCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCCC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccCC
Confidence 356677888777777777777664488999998875 89999999999999999999988999999999999887654
No 224
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.21 E-value=5.7e-12 Score=109.05 Aligned_cols=75 Identities=20% Similarity=0.198 Sum_probs=61.6
Q ss_pred cceecCCCHHHHHhhHhhcccccCeeeEEEeeCC--CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSA--FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~--~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~ 415 (612)
+++|+||+++.++++|+++|...++.+|+|+.++ +|+++|||||+|.+.++|++||.+++..|+||.|.|..+..
T Consensus 21 ~l~V~nLp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 21 TAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp EEEESCCSSCCSSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEeccC
Confidence 3446667666666677766665338899999886 69999999999999999999999899999999999977654
No 225
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.21 E-value=3.5e-11 Score=109.72 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=62.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeE-EEEEeCCHHHHHHHHH-hCCcccCC--E
Q psy16116 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGD-AFVLFEKEEEADKALS-KHKESIGI--R 514 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~-AFV~F~s~edA~kAL~-~~~~~igg--R 514 (612)
..|||+||+|.+++++|+++|+.|| .+..|+|... +|| |||+|.+.++|.+|++ +||..|.| |
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG--------~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~ 92 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVG--------KVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCC 92 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTS--------CEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcC--------CEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCe
Confidence 4578999999999999999999999 4567888642 386 9999999999999996 89999977 6
Q ss_pred EEEEEecch
Q psy16116 515 YIELFRSTT 523 (612)
Q Consensus 515 ~IeV~~as~ 523 (612)
.|+|..+..
T Consensus 93 ~l~V~~Ak~ 101 (124)
T 2e5i_A 93 TLKIEYARP 101 (124)
T ss_dssp EEEEECCSC
T ss_pred EEEEEEecC
Confidence 899987754
No 226
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.20 E-value=6e-12 Score=110.78 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=62.1
Q ss_pred EeCCCCCCCHHHHHHHH------------hcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCc
Q psy16116 443 MRGLPYECTAKQVIDFF------------EAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKE 509 (612)
Q Consensus 443 V~nLP~s~te~dLrefF------------~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~ 509 (612)
+.||++.+++++|++.| ++|| .+.+|+|+.+.+|+++|||||+|.+.++|++|++ +||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G--------~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~ 91 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYG--------EVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 91 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------CEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCC--------ceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCC
Confidence 56788888888777666 9999 4577999998889999999999999999999996 8999
Q ss_pred ccCCEEEEEEec
Q psy16116 510 SIGIRYIELFRS 521 (612)
Q Consensus 510 ~iggR~IeV~~a 521 (612)
.++||.|.|..+
T Consensus 92 ~~~Gr~i~v~~s 103 (104)
T 1jmt_A 92 WFNGQPIHAELS 103 (104)
T ss_dssp EETTEECCEEEC
T ss_pred EECCEEEEEEEc
Confidence 999999999765
No 227
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.20 E-value=1.8e-11 Score=101.30 Aligned_cols=76 Identities=13% Similarity=0.102 Sum_probs=61.6
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+|||.+.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++|++ +++..++||.|.|..+...
T Consensus 3 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 3 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 4556677766666666665554 458899999884 68999999999999999999998 7999999999999877643
No 228
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=3.1e-11 Score=102.56 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=61.0
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+||+.+.++++|+++|.. +.+.+|+++.++. |+++|||||+|.+.++|++|++ +|+..++|+.|.|..+...
T Consensus 7 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 85 (95)
T 2dnz_A 7 GLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 85 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccc
Confidence 4556666666666666655544 4588999998864 8999999999999999999998 8999999999999877653
No 229
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=2.3e-11 Score=103.60 Aligned_cols=76 Identities=14% Similarity=0.070 Sum_probs=59.2
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeE-EEeeC-CCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGV-ALCLS-AFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V-~ii~d-~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+|||.+.++++|+++|.. +.+.+| +++.+ .+|+++|||||+|.+.++|++|++ +++..|+|+.|.|..+...
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 86 (96)
T 1x5t_A 7 GIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 86 (96)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeccc
Confidence 4445556555555555554443 347788 88888 578999999999999999999998 8999999999999887654
No 230
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.19 E-value=1.8e-11 Score=102.55 Aligned_cols=75 Identities=17% Similarity=0.134 Sum_probs=59.8
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~ 415 (612)
+++|+|||.+.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++|+.+++..++|+.|.|..+..
T Consensus 8 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 8 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 4456666665555555555544 458899999886 68999999999999999999998899999999999977653
No 231
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.18 E-value=3.6e-11 Score=108.43 Aligned_cols=72 Identities=18% Similarity=0.145 Sum_probs=63.4
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~ 515 (612)
...+|||+|| ++++++|+++|+.|| . +..|.+. +++|||||+|.+.++|++||+ +|+..++||.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G----~----I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFG----N----IIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTC----C----CSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccC----C----EEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 4678999995 799999999999999 3 4557774 788999999999999999995 7999999999
Q ss_pred EEEEecch
Q psy16116 516 IELFRSTT 523 (612)
Q Consensus 516 IeV~~as~ 523 (612)
|.|..+..
T Consensus 103 l~V~~a~~ 110 (121)
T 2bz2_A 103 LKVNIARK 110 (121)
T ss_dssp CEEEECCS
T ss_pred EEEEEeCC
Confidence 99998754
No 232
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=3.4e-11 Score=105.88 Aligned_cols=75 Identities=12% Similarity=0.026 Sum_probs=60.1
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+++|+||+++.++++|+++|.. +.+.+|+|+.+++|+++|||||+|.+.++|++|++ +++..|+|+.|.|..+..
T Consensus 17 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 17 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 4445556655555555555543 35889999999999999999999999999999998 899999999999987754
No 233
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.18 E-value=2.6e-11 Score=105.44 Aligned_cols=74 Identities=22% Similarity=0.132 Sum_probs=59.8
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~ 414 (612)
+++|+||+++.++++|+++|.. +.+..|+|+.+++|+++|||||+|.+.++|++|++ +++..|+|+.|.|..++
T Consensus 31 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 31 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4456666665555555555544 35889999999999999999999999999999998 79999999999997653
No 234
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.18 E-value=4.8e-11 Score=105.22 Aligned_cols=83 Identities=16% Similarity=0.154 Sum_probs=69.9
Q ss_pred cccEEEEeCC--CCCCC--------HHHHHHHHhcCCCCccccccCceeEEEeeCCCC---CceeEEEEEeCCHHHHHHH
Q psy16116 437 AQVIIRMRGL--PYECT--------AKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDG---KATGDAFVLFEKEEEADKA 503 (612)
Q Consensus 437 ~~~~VfV~nL--P~s~t--------e~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~G---rskG~AFV~F~s~edA~kA 503 (612)
.+.+|.|+|+ |.... ++||++.|++|| .+.+|+|+++..+ +++|||||+|.+.++|.+|
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G--------~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~A 75 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYG--------LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKA 75 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTS--------CEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHH
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccC--------CEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHH
Confidence 3568999998 44443 479999999999 4577999988743 6899999999999999999
Q ss_pred HH-hCCcccCCEEEEEEecchHHHH
Q psy16116 504 LS-KHKESIGIRYIELFRSTTAEVQ 527 (612)
Q Consensus 504 L~-~~~~~iggR~IeV~~as~~e~~ 527 (612)
++ +||..++||.|.|..++...+.
T Consensus 76 i~~lnG~~f~GR~i~v~~~~~~~f~ 100 (105)
T 3v4m_A 76 MQGLTGRKFANRVVVTKYCDPDSYH 100 (105)
T ss_dssp HHHHTTCEETTEECEEEEECHHHHH
T ss_pred HHHhCCCEeCCCEEEEEEeCHHHHh
Confidence 95 8999999999999998877654
No 235
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.17 E-value=2.8e-11 Score=104.07 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=54.7
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeee--------EEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEE
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGG--------VALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEV 410 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~--------V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV 410 (612)
++|+||+++.++++|+++|.. +.+.+ |+++.++ +|+++|||||+|.+.++|++|++ +++..++||.|.|
T Consensus 16 l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 95 (99)
T 2la6_A 16 IFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKV 95 (99)
T ss_dssp EEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 335555554444444444443 33666 8999885 58999999999999999999997 8999999999999
Q ss_pred ecc
Q psy16116 411 TKA 413 (612)
Q Consensus 411 ~~s 413 (612)
..+
T Consensus 96 ~~A 98 (99)
T 2la6_A 96 SFA 98 (99)
T ss_dssp EEC
T ss_pred Eec
Confidence 765
No 236
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.17 E-value=2.7e-10 Score=103.66 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=53.4
Q ss_pred HHHHhhHhhcccccCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 350 SLLLNTIPGYEQVLGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 350 ~~~e~~fkeff~~~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
++++++|+.|+ .+.+|+|+.++. |+++|||||+|.+.++|++|++ +|+..|+|+.|.|..+...
T Consensus 57 ~~l~~~F~~~G---~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 122 (139)
T 1u6f_A 57 VQLRQLFERYG---PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASG 122 (139)
T ss_dssp HHHHHHHHHHS---CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred HHHHHHHHhcC---CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 55555555554 488999988864 8899999999999999999998 7999999999999887654
No 237
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=3.4e-11 Score=104.30 Aligned_cols=73 Identities=18% Similarity=0.124 Sum_probs=56.7
Q ss_pred ecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 344 VQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 344 V~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
|+||+++.++++|+++|.. +.+..|+++.++ +|+++|||||+|.+.++|++|++ +++..|+|+.|.|..+...
T Consensus 20 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 95 (105)
T 1x5u_A 20 VGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAH 95 (105)
T ss_dssp EECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTT
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 4445444444444444433 348899999887 68999999999999999999998 7999999999999887654
No 238
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.17 E-value=7e-12 Score=101.97 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=55.2
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEec
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTK 412 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~ 412 (612)
++|+|||.+.++++|+++|.. +.+.+|.+..++. |+++|||||+|.+.++|++|++.++..++|+.|.|..
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 345555555555555554443 3478888888864 8999999999999999999999999999999988864
No 239
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=4.8e-11 Score=101.16 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=58.6
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEecc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKA 413 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s 413 (612)
+++|+|||.+.++++|+++|.. +.+..|+++.++. |+++|||||+|.+.++|++|++ +|+..|+||.|.|..+
T Consensus 18 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 18 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp SEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 4446666666666666665554 4588999998875 8899999999999999999996 8999999999999764
No 240
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.16 E-value=5.3e-11 Score=112.05 Aligned_cols=76 Identities=11% Similarity=0.014 Sum_probs=61.3
Q ss_pred cceecCCCHHHHHhhHhhcccc-c--CeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-L--GLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~--~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+++|+||+++.++++|+++|.. + .+.+|+|+.|+ +|+++|||||+|.+.++|++||+ +|+..|+||.|.|..+..
T Consensus 57 ~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 57 AVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence 4556666666666666655544 3 48899999986 69999999999999999999998 599999999999988765
Q ss_pred c
Q psy16116 416 E 416 (612)
Q Consensus 416 ~ 416 (612)
.
T Consensus 137 ~ 137 (156)
T 3n9u_C 137 Q 137 (156)
T ss_dssp H
T ss_pred C
Confidence 4
No 241
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.16 E-value=1.2e-11 Score=106.60 Aligned_cols=96 Identities=16% Similarity=0.007 Sum_probs=65.5
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchh
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFI 419 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~ 419 (612)
++|+|||.+.++++|+++|.. +.+.+|.++.+ ++|||||+|.+.++|++|++ +++..++|+.|.|..+......
T Consensus 3 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 3 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp EEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 445555555555555544443 35788998876 78999999999999999998 7999999999999887654321
Q ss_pred hccCCCCcchhhhccCCcccEEEEeCCC
Q psy16116 420 NVAGGNNNEAQAFLTRGAQVIIRMRGLP 447 (612)
Q Consensus 420 ~~~g~~~~e~~~~~~~~~~~~VfV~nLP 447 (612)
...+... ..+.....|||+||+
T Consensus 79 ~~~~~~~------~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 79 SRFDRPP------ARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCSCC------CSCCCCSCCCSCCCC
T ss_pred ccCCCCC------ccccCCCceecCCCC
Confidence 1111110 011234569999996
No 242
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=3.2e-11 Score=104.60 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=60.3
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+|||++.++++|+++|.. +.+.+|+|+.++ +|+++|||||+|++.++|++||+.++..|+|+.|.|..+...
T Consensus 18 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~ 95 (105)
T 2dh8_A 18 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 95 (105)
T ss_dssp EECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCC
Confidence 4446666665555555555544 458899999985 589999999999999999999988999999999999887654
No 243
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.7e-11 Score=104.77 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=59.9
Q ss_pred cceecCCCHHHHHhhHhhcccc--cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCc-cCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV--LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHH-IDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~--~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~-IggR~IeV~~s~~~ 416 (612)
+++|+||+.+.++++|+++|.. +.+.+|+|+.+++|+++|||||+|.+.++|++||+ +++.. |+|+.|.|..+...
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~ 90 (104)
T 2dhg_A 11 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 90 (104)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCC
Confidence 4445566655555555554443 34889999999999999999999999999999998 78888 99999999877554
No 244
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.16 E-value=4.4e-11 Score=103.62 Aligned_cols=75 Identities=15% Similarity=0.069 Sum_probs=58.1
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCc---eEEEEeccCcc
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDK---RYIEVTKANGE 416 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Igg---R~IeV~~s~~~ 416 (612)
++|+||+++.++++|+++|.. +.+..|+|+.+++|+++|||||+|.+.++|++||+ +|+..+.| +.|.|..+...
T Consensus 18 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~ 97 (105)
T 2dnh_A 18 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTD 97 (105)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccC
Confidence 335555555444444444443 34889999999999999999999999999999997 89988887 99999877653
No 245
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.16 E-value=3.5e-11 Score=106.01 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=57.6
Q ss_pred eecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116 343 LVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 343 lV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~ 416 (612)
+|+||+++.++++|+++|.. +.+.+|+++.+++ |+++|||||+|.+.++|++||+..+..|+||.|.|..+...
T Consensus 29 fV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~ 104 (109)
T 2rs2_A 29 FIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR 104 (109)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCCC
T ss_pred EEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccCC
Confidence 35555555555555544443 3588999998874 89999999999999999999998789999999999877543
No 246
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=4.4e-11 Score=101.42 Aligned_cols=74 Identities=19% Similarity=0.163 Sum_probs=58.1
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~ 414 (612)
+++|+|||.+.++++|+++|.. +.+.+|.++.++. |+++|||||+|.+.++|++|++ +|+..++||.|.|..+.
T Consensus 17 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 17 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp CEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 4455566655555555554443 3488999998865 7899999999999999999998 79999999999997764
No 247
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.16 E-value=2.8e-11 Score=100.60 Aligned_cols=73 Identities=16% Similarity=0.079 Sum_probs=57.0
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeC-CCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEecc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLS-AFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKA 413 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d-~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s 413 (612)
+++|+|||.+.++++|+++|.. +.+.+|.++.+ .+|+++|||||+|.+.++|++|++ +|+..++|+.|.|..+
T Consensus 9 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 9 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4445566655555555554443 45889999887 568899999999999999999995 8999999999999754
No 248
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.16 E-value=1.6e-10 Score=101.99 Aligned_cols=64 Identities=9% Similarity=0.113 Sum_probs=53.4
Q ss_pred HHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 350 SLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 350 ~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
++++++|+.|+ .+.+|+|+.++ +|+++|||||+|.+.++|++||+ +|+..|+|+.|.|..+...
T Consensus 40 ~~l~~~F~~~G---~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 105 (115)
T 2cpz_A 40 QDLLQMFMPFG---NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK 105 (115)
T ss_dssp HHHHHHHGGGS---CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCS
T ss_pred HHHHHHHHhcC---CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence 55555555554 48899999987 68999999999999999999995 7999999999999877654
No 249
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=4.3e-11 Score=104.24 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=57.3
Q ss_pred cEEEEeCCCCCCCHHH----HHHHHhcC-CCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccC
Q psy16116 439 VIIRMRGLPYECTAKQ----VIDFFEAG-TENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIG 512 (612)
Q Consensus 439 ~~VfV~nLP~s~te~d----LrefF~~~-Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~ig 512 (612)
.+|||+|||+++++++ |+++|+.| | +|++ | +| |+|||+|.+.++|++|++ +++..+.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG----~Vl~----V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~ 72 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGG----KVLS----I------TG---CSAILRFINQDSAERAQKRMENEDVF 72 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTC----CEEE----C------CT---TCEEEEESSHHHHHHHHHHHTTCCSS
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCC----eeEE----E------ec---CEEEEEECCHHHHHHHHHHhcCCccC
Confidence 3499999999999988 55899999 6 4532 2 34 999999999999999996 8999999
Q ss_pred CEEEEEEecc
Q psy16116 513 IRYIELFRST 522 (612)
Q Consensus 513 gR~IeV~~as 522 (612)
||.|+|..+.
T Consensus 73 gr~i~v~~A~ 82 (96)
T 2diu_A 73 GNRIIVSFTP 82 (96)
T ss_dssp SSCCEEESSC
T ss_pred CceEEEEecC
Confidence 9999998764
No 250
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=7.4e-11 Score=101.97 Aligned_cols=75 Identities=15% Similarity=0.073 Sum_probs=61.5
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+|||.+.++++|+++|.. +.+..|+|+.+ +|+++|||||+|.+.++|++|++ +|+..|+|+.|.|..+...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2d9p_A 17 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 93 (103)
T ss_dssp CEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccc
Confidence 4446666666666666665554 45889999998 89999999999999999999997 8999999999999887654
No 251
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=7.3e-11 Score=102.02 Aligned_cols=76 Identities=16% Similarity=0.100 Sum_probs=62.6
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+|||.+.++++|+++|.. +.+..|+|+.++ +|+++|||||+|.+.++|++||+ +++..|+|+.|.|..+...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 95 (103)
T 2cq0_A 17 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPS 95 (103)
T ss_dssp EEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCC
Confidence 4556677776666667766654 458899999986 68999999999999999999998 8999999999999877653
No 252
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.14 E-value=5.3e-11 Score=104.93 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=59.8
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+|+|+||+.+.++++|+++|.. +.+.+|+|+.++ +|+++|||||+|.+.++|++||+ +++..|+|+.|.|..+...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 95 (115)
T 2dgo_A 17 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 95 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 4445555555555555554443 358899999986 68999999999999999999997 7999999999999887654
No 253
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=3.2e-11 Score=104.26 Aligned_cols=75 Identities=20% Similarity=0.126 Sum_probs=58.6
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+++|+||+.+.++++|+++|.. +.+..|.|+.++. |+++|||||+|.+.++|++||+ +|+..|+|+.|.|..+..
T Consensus 15 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARY 92 (103)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCc
Confidence 3345555555555555554443 3588999988865 8999999999999999999998 899999999999987764
No 254
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.14 E-value=5.3e-11 Score=106.11 Aligned_cols=77 Identities=13% Similarity=0.073 Sum_probs=60.3
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED 417 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e 417 (612)
+++|+||+++.++++|+++|.. +.+.+|.|+.+++|+++|||||+|.+.++|++|++ +++..|+|+.|.|..+....
T Consensus 9 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPS 87 (116)
T ss_dssp EEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 3345555555555555544443 34889999999999999999999999999999997 79999999999998876543
No 255
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.14 E-value=4.3e-11 Score=102.28 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=60.0
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+||+.+.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++|++ +++..++||.|.|..+...
T Consensus 4 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 4 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 4456666665555555555443 458899998886 48999999999999999999996 8999999999999887654
No 256
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.13 E-value=6.5e-11 Score=105.99 Aligned_cols=74 Identities=22% Similarity=0.139 Sum_probs=57.6
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
++|+||+.+.++++|+++|.. +.+.+|+|+.+++|+++|||||+|.+.++|++|++ +++..++|+.|.|..+..
T Consensus 38 l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 113 (124)
T 2kt5_A 38 LLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 113 (124)
T ss_dssp EEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 334455444444444444333 34889999999899999999999999999999998 899999999999987764
No 257
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=3.8e-11 Score=105.84 Aligned_cols=76 Identities=13% Similarity=0.096 Sum_probs=59.8
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+||+++.++++|+++|.. +.+.+|+|+.++. |+++|||||+|.+.++|++||.+|+..|+|+.|.|..+...
T Consensus 27 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 27 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCC
Confidence 3445555555555555555443 3588999998876 89999999999999999999988999999999999877543
No 258
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.13 E-value=4.1e-11 Score=102.50 Aligned_cols=76 Identities=20% Similarity=0.221 Sum_probs=59.9
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC--C--CCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF--G--RRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~--G--rsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~ 414 (612)
+++|+|||++.++++|+++|.. +.+..|+++.+++ | +++|||||+|.+.++|++|++ +++..|+|+.|.|..+.
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (98)
T 2cpf_A 7 GLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE 86 (98)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Confidence 4456666666666666655544 4588899988764 4 889999999999999999998 79999999999998876
Q ss_pred cc
Q psy16116 415 GE 416 (612)
Q Consensus 415 ~~ 416 (612)
..
T Consensus 87 ~~ 88 (98)
T 2cpf_A 87 RA 88 (98)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 259
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.13 E-value=8.3e-11 Score=102.03 Aligned_cols=75 Identities=25% Similarity=0.230 Sum_probs=57.5
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC--CCCCcceEEEEeCCHHHHHHHHH-h-CCCccCceEEEEeccCcc
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA--FGRRNGEAIVRFIDQEHRDMALK-R-HKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~--~GrsrG~AFVeF~S~EdA~kAL~-~-ng~~IggR~IeV~~s~~~ 416 (612)
++|+|||.+.++++|+++|.. +.+..|+|+.+. +|+++|||||+|.+.++|++||+ + |+..|+|+.|.|..+...
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~ 97 (107)
T 2cph_A 18 ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSE 97 (107)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCC
T ss_pred EEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCC
Confidence 335555554444444444433 348899998884 78999999999999999999997 6 899999999999887654
No 260
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.12 E-value=2.5e-11 Score=103.13 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=58.6
Q ss_pred ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeC-CCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLS-AFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d-~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~ 414 (612)
.+++|+|||++.++++|+++|.. +.+..++++.+ .+|+++|||||+|.+.++|++||+ +|+..|+||.|+|..++
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 35667777777776766666654 33555666555 468999999999999999999997 79999999999997764
No 261
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.12 E-value=3.5e-11 Score=103.55 Aligned_cols=74 Identities=14% Similarity=0.072 Sum_probs=60.3
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccch
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDF 418 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~ 418 (612)
-++|+||+++.+++.++++|.. +.+.++++.. ++|||||+|.+++||++|++ +|+..++||.|+|..+++.++
T Consensus 9 wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~~~ 83 (89)
T 2wbr_A 9 WLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSENEV 83 (89)
T ss_dssp EEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCHHHH
T ss_pred eEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCHHHH
Confidence 4567777777777777766654 5688888854 79999999999999999997 899999999999988765554
Q ss_pred h
Q psy16116 419 I 419 (612)
Q Consensus 419 ~ 419 (612)
.
T Consensus 84 ~ 84 (89)
T 2wbr_A 84 Q 84 (89)
T ss_dssp H
T ss_pred H
Confidence 3
No 262
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=9.4e-11 Score=100.60 Aligned_cols=74 Identities=20% Similarity=0.068 Sum_probs=59.2
Q ss_pred ccceecCCCHHHHHhhHh----hcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEecc
Q psy16116 340 LCPLVQNIWLSLLLNTIP----GYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKA 413 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fk----eff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s 413 (612)
.+++|+|||++.++++++ ++|.. +.+.+|+|+.++++ +|||||+|.+.++|++|++ +|+..++||.|.|..+
T Consensus 10 ~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 10 ADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 355566666665555555 65554 45899999988877 8999999999999999997 8999999999999877
Q ss_pred Cc
Q psy16116 414 NG 415 (612)
Q Consensus 414 ~~ 415 (612)
..
T Consensus 88 ~~ 89 (96)
T 2dgx_A 88 TG 89 (96)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 263
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1.3e-10 Score=102.16 Aligned_cols=71 Identities=21% Similarity=0.173 Sum_probs=54.8
Q ss_pred ecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 344 VQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 344 V~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
|+||+.+.++++|+++|.. +.+.+|+++.++. +++|||||+|.+.++|++|++ +++..++||.|.|..+..
T Consensus 34 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 34 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp EESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred EECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4555554444444444443 3488899988854 599999999999999999998 799999999999987754
No 264
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=6.4e-11 Score=104.67 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=59.5
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+||+++.++++|+++|.. +.+..|+|+.++ +|+++|||||+|.+.++|++||+.++..|+||.|.|..+...
T Consensus 29 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 29 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp EEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCC
Confidence 3445555555555555555443 348899999886 489999999999999999999988889999999999887654
No 265
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.4e-10 Score=100.30 Aligned_cols=75 Identities=21% Similarity=0.171 Sum_probs=58.5
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+|||.+.++++|+++|.. +.+..|+|+.++.+ ++|||||+|.+.++|++|++ +++..|+|+.|.|..+...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 93 (103)
T 2cq3_A 17 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 93 (103)
T ss_dssp EEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccC
Confidence 3445555555555555555544 45889999988765 89999999999999999997 7999999999999887654
No 266
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1e-10 Score=101.14 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=51.8
Q ss_pred HHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116 350 SLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 350 ~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~ 416 (612)
++++++|+.|+ .+..|+|+.++ +|+++|||||+|.+.++|++||+ +++.|+|+.|.|..+...
T Consensus 30 ~~l~~~F~~~G---~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~~~ 93 (103)
T 2cqg_A 30 QDLKEYFSTFG---EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSK 93 (103)
T ss_dssp HHHHHHHGGGS---CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCCTT
T ss_pred HHHHHHHHhcC---CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecCCC
Confidence 55555555554 48899999986 48999999999999999999998 577899999999887654
No 267
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.9e-10 Score=101.72 Aligned_cols=76 Identities=16% Similarity=0.065 Sum_probs=63.0
Q ss_pred cccEEEEeCCCCCCC-----------HHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH
Q psy16116 437 AQVIIRMRGLPYECT-----------AKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS 505 (612)
Q Consensus 437 ~~~~VfV~nLP~s~t-----------e~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~ 505 (612)
...+|+|+||....+ +++|+++|++|| .+..|.| .+. .++|||||+|.+.++|++|++
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G--------~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~ 82 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFG--------QIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQ 82 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTS--------CCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHH
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccC--------CEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHH
Confidence 567899999944433 589999999999 3456755 443 489999999999999999995
Q ss_pred -hCCcccCCEEEEEEecch
Q psy16116 506 -KHKESIGIRYIELFRSTT 523 (612)
Q Consensus 506 -~~~~~iggR~IeV~~as~ 523 (612)
+|+..++||.|.|..+..
T Consensus 83 ~lng~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 83 TLDGRWFGGRQITAQAWDG 101 (112)
T ss_dssp HSTTCEETTEECEEEECCS
T ss_pred HcCCCEECCcEEEEEEeCC
Confidence 799999999999998753
No 268
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=8e-11 Score=101.42 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=57.4
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+|||++.++++|+++|.. +.+..|+++.++ +|+++|||||+|.+.++|++|++ +|+..|+|+.|.|..+...
T Consensus 14 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 92 (102)
T 1x5s_A 14 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 92 (102)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 3345555555444444444433 348899998886 58899999999999999999995 8999999999999777543
No 269
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=7.8e-11 Score=101.46 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=62.2
Q ss_pred ccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
.+++|+|||++.++++|+++|... ..|+++.+.+|+++|||||+|.+.++|++||+ +++..|+|+.|.|..+...
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~--g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 16 KTLVLSNLSYSATEETLQEVFEKA--TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHHCSSC--SEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhC--CEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 355677788777777777777643 35678888889999999999999999999998 8999999999999887654
No 270
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.11 E-value=7.1e-11 Score=99.72 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=57.9
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+++|+|||.+.++++|+++|.. +.+..|++.++ +|+++|||||+|.+.++|++|++ +++..++|+.|.|..+..
T Consensus 10 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 10 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp EEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4456666655555555555443 35888988874 78999999999999999999997 799999999999977654
No 271
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.11 E-value=2.9e-11 Score=98.60 Aligned_cols=72 Identities=18% Similarity=0.215 Sum_probs=54.7
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA 413 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s 413 (612)
++|+|||.+.++++++++|.. +.+.+|.++.++ +|+++|||||+|.+.++|++|++..+..++||.|.|..+
T Consensus 3 l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp EEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 445555555555555544443 347889999886 489999999999999999999986558999999998654
No 272
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=4.4e-11 Score=99.70 Aligned_cols=73 Identities=8% Similarity=0.010 Sum_probs=59.9
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEecc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKA 413 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s 413 (612)
+++|+|||.+.++++|+++|.. +.+..|+++.++ +|+++|||||+|.+.++|++|++ +|+..++||.|++.+.
T Consensus 7 ~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 7 GLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp EEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 5557777777777777766654 458899998885 58999999999999999999997 8999999998887544
No 273
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=6.5e-11 Score=101.98 Aligned_cols=76 Identities=16% Similarity=0.055 Sum_probs=58.0
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+|||++.++++|+++|.. +.+.+|+|+.++ +|+++|||||+|.+.++|++|++ +|+..|+|+.|.|..+...
T Consensus 14 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2cqb_A 14 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM 92 (102)
T ss_dssp CEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCC
Confidence 3445555555445555544443 348889998885 58999999999999999999996 7999999999999877654
No 274
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.10 E-value=6.5e-11 Score=104.23 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=56.8
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
++|+||+.+.++++|+++|.. +.+..|+++.++ +|+++|||||+|.+.++|++|++ +++..|+||.|.|..+..
T Consensus 29 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 29 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp EEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence 335555554444444444433 348899998885 58899999999999999999996 899999999999987754
No 275
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1.8e-10 Score=99.55 Aligned_cols=74 Identities=14% Similarity=0.021 Sum_probs=55.9
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
++|+|||.+.++++|+++|.. +.+..|+|+.++.+ ++|||||+|.+.++|++||+ +++..|+|+.|.|..+...
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 18 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP 93 (103)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred EEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence 334455544444444444433 34889999888654 79999999999999999997 8999999999999887653
No 276
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.10 E-value=4.3e-11 Score=102.36 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=57.6
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeC-CCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLS-AFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d-~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+++|+|||++.++++|+++|.. +.+..++++.+ .+|+++|||||+|.+.++|++|++ +|+..|+||.|+|..+..
T Consensus 17 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 17 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence 5557777776666666666654 33555555554 568999999999999999999995 799999999999987653
No 277
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=8.5e-11 Score=103.27 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=57.6
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCee--------eEEEeeC-CCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEE
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLG--------GVALCLS-AFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIE 409 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~--------~V~ii~d-~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~Ie 409 (612)
+++|+||+++.++++|+++|.. +.+. .|+|+.+ .+|+++|||||+|.+.++|++||+ +|+..|+|+.|.
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (113)
T 2cpe_A 17 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLK 96 (113)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECE
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEE
Confidence 3345555555555555544443 2355 5889888 468999999999999999999997 799999999999
Q ss_pred EeccCcc
Q psy16116 410 VTKANGE 416 (612)
Q Consensus 410 V~~s~~~ 416 (612)
|..+...
T Consensus 97 V~~a~~~ 103 (113)
T 2cpe_A 97 VSLARKK 103 (113)
T ss_dssp EECSSCC
T ss_pred EEECCCC
Confidence 9887654
No 278
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.10 E-value=1.2e-10 Score=105.98 Aligned_cols=75 Identities=19% Similarity=0.126 Sum_probs=60.7
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+++|+|||++.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++||+ +++..|+|+.|.|..+..
T Consensus 48 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 48 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp CBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 5556666666666666665554 458899999886 48999999999999999999997 899999999999977754
No 279
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=8.3e-11 Score=102.01 Aligned_cols=75 Identities=13% Similarity=0.057 Sum_probs=58.8
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+++|+||+.+.++++|+++|.. +.+.+|.++.++. |+++|||||+|.+.++|++|++ +++..++|+.|.|..+..
T Consensus 25 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 25 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence 3445566655555555554443 4588999998865 8999999999999999999997 799999999999977643
No 280
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.09 E-value=2.3e-10 Score=103.26 Aligned_cols=83 Identities=13% Similarity=0.088 Sum_probs=69.9
Q ss_pred cccEEEEeCCCCC-----CCHHHHHHHHhcCCCCccccccCceeEEEeeCC-----CCCceeEEEEEeCCHHHHHHHHH-
Q psy16116 437 AQVIIRMRGLPYE-----CTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-----DGKATGDAFVLFEKEEEADKALS- 505 (612)
Q Consensus 437 ~~~~VfV~nLP~s-----~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-----~GrskG~AFV~F~s~edA~kAL~- 505 (612)
.+.+|+|+|+-.. --++||++.|++|| .+.+|+|+.+. +++++|||||+|.+.++|.+|++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G--------~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~ 90 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFG--------AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQA 90 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTS--------CEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccC--------CEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHH
Confidence 4678999998321 23799999999999 45779998875 35789999999999999999996
Q ss_pred hCCcccCCEEEEEEecchHHHH
Q psy16116 506 KHKESIGIRYIELFRSTTAEVQ 527 (612)
Q Consensus 506 ~~~~~iggR~IeV~~as~~e~~ 527 (612)
+||..++||.|.|..++...+.
T Consensus 91 LnGr~f~GR~i~v~~~~~~~f~ 112 (118)
T 3ue2_A 91 LNGRWFAGRKVVAEVYDQERFD 112 (118)
T ss_dssp HTTCEETTEECEEEEECHHHHH
T ss_pred HCCCEECCcEEEEEEcChHhcc
Confidence 8999999999999998876554
No 281
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.09 E-value=3.8e-10 Score=99.84 Aligned_cols=73 Identities=7% Similarity=0.038 Sum_probs=58.2
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEecc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKA 413 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s 413 (612)
+++|+||+++.++++|+++|.. +.+.+|+|+.++ +|+++|||||+|.+.++|++|++ +|+..|+||.|+|..+
T Consensus 42 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 42 NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp EEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 4456666666666666655554 348899998885 58999999999999999999997 7999999999998654
No 282
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.09 E-value=1.4e-10 Score=101.31 Aligned_cols=75 Identities=20% Similarity=0.175 Sum_probs=57.7
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hC------CCccCceEEEEec
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RH------KHHIDKRYIEVTK 412 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~n------g~~IggR~IeV~~ 412 (612)
++|+|||++.++++|+++|.. +.+.+|+|+.++. |+++|||||+|.+.++|++||+ ++ +..|+|+.|.|..
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~ 97 (111)
T 1x4h_A 18 VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDL 97 (111)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEEC
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEE
Confidence 335555555555555544443 3488999988864 8899999999999999999997 77 8999999999988
Q ss_pred cCcc
Q psy16116 413 ANGE 416 (612)
Q Consensus 413 s~~~ 416 (612)
+...
T Consensus 98 a~~~ 101 (111)
T 1x4h_A 98 AVTR 101 (111)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 283
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.09 E-value=3.8e-11 Score=99.65 Aligned_cols=69 Identities=19% Similarity=0.117 Sum_probs=52.9
Q ss_pred cceecCCCHHH------HHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCce-EEEE
Q psy16116 341 CPLVQNIWLSL------LLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKR-YIEV 410 (612)
Q Consensus 341 ~vlV~nLp~~~------~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR-~IeV 410 (612)
+++|+|||++. ++++|+++|.. +.+.+|++. ..+|+++|||||+|.+.++|++|++ +|+..++|| .|.|
T Consensus 3 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 3 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp EEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 34455555544 55666655544 458888876 5679999999999999999999997 799999999 7776
No 284
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=1.3e-10 Score=100.09 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=62.1
Q ss_pred cceecCCCHHHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+||+++.++++|+++|.. ...|+++.++ +|+++|||||+|.+.++|++||+ +++..|+|+.|.|..+...
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~--~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 17 TLFVKGLSEDTTEETLKESFDG--SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp SEEEECCCTTCCHHHHHHTSTT--CSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred EEEEeCCCCccCHHHHHHHhcC--CeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 5557788888888888887773 3478888875 68999999999999999999997 7999999999999887654
No 285
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.08 E-value=9.9e-11 Score=101.55 Aligned_cols=76 Identities=18% Similarity=0.160 Sum_probs=57.0
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCcc---CceEEEEeccC
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHI---DKRYIEVTKAN 414 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~I---ggR~IeV~~s~ 414 (612)
+++|+||+.+.++++|+++|.. +.+.+|+|+.++. |+++|||||+|.+.++|++|++ +|+..+ +|+.|.|..+.
T Consensus 15 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 94 (106)
T 2dgp_A 15 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPAD 94 (106)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECC
Confidence 3345555554444444444433 3488999988875 8999999999999999999997 888887 88999998776
Q ss_pred cc
Q psy16116 415 GE 416 (612)
Q Consensus 415 ~~ 416 (612)
..
T Consensus 95 ~~ 96 (106)
T 2dgp_A 95 SE 96 (106)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 286
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.08 E-value=6.4e-11 Score=105.77 Aligned_cols=73 Identities=15% Similarity=0.158 Sum_probs=56.2
Q ss_pred eecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116 343 LVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 343 lV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~ 415 (612)
+|+||+++.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++||++++..|+|+.|.|..+..
T Consensus 40 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 40 YVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp EEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 34445444444444444433 348899998885 68999999999999999999998899999999999977653
No 287
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=6.5e-11 Score=102.21 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=58.9
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+||+++.++++|+++|.. +.+..|+++.++ +|+++|||||+|.+.++|++|++ +++..++|+.|.|..+...
T Consensus 10 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp CEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred EEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 3445555555555555544443 347889998885 68999999999999999999996 8999999999999887654
No 288
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.07 E-value=4.3e-11 Score=103.28 Aligned_cols=74 Identities=12% Similarity=0.111 Sum_probs=60.2
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~ 415 (612)
+++|+||+++.++++|+++|.. +.+.+|+++.+++|+++|||||+|.+.++|++|++ ++..|+|+.|.|..+..
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 11 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 4556666666666666655544 45889999999999999999999999999999999 99999999999876653
No 289
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.07 E-value=1.1e-10 Score=101.89 Aligned_cols=73 Identities=18% Similarity=0.095 Sum_probs=55.9
Q ss_pred ceecCCCHHH------HHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCce-EEEEec
Q psy16116 342 PLVQNIWLSL------LLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKR-YIEVTK 412 (612)
Q Consensus 342 vlV~nLp~~~------~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR-~IeV~~ 412 (612)
++|+|||++. ++++|+++|.. +.+.+|.|. ..+|+++|||||+|.+.++|++|++ +|+..|+|| .|.|..
T Consensus 18 l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~ 96 (105)
T 2nlw_A 18 IVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNL 96 (105)
T ss_dssp EEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEEC
T ss_pred EEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEE
Confidence 3355555444 45555554443 448888887 5679999999999999999999998 799999999 999987
Q ss_pred cCc
Q psy16116 413 ANG 415 (612)
Q Consensus 413 s~~ 415 (612)
+..
T Consensus 97 a~~ 99 (105)
T 2nlw_A 97 FTD 99 (105)
T ss_dssp SCC
T ss_pred cch
Confidence 754
No 290
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.06 E-value=1.3e-10 Score=101.62 Aligned_cols=75 Identities=17% Similarity=0.050 Sum_probs=58.7
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+++|+|||.+.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++|++ +++..|+|+.|.|..+..
T Consensus 28 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 28 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence 4445666655555555554443 458899998885 68999999999999999999997 899999999999977653
No 291
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.06 E-value=2.5e-10 Score=103.50 Aligned_cols=71 Identities=20% Similarity=0.173 Sum_probs=53.6
Q ss_pred ecCCCHHHHHhhHhhcccc-cCeee--EEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCC----ccCceEEEEeccC
Q psy16116 344 VQNIWLSLLLNTIPGYEQV-LGLGG--VALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKH----HIDKRYIEVTKAN 414 (612)
Q Consensus 344 V~nLp~~~~e~~fkeff~~-~~v~~--V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~----~IggR~IeV~~s~ 414 (612)
|+||+++.++++|+++|.. +.+.. |+|++|+ +|+++|||||+|.+. +|++|++ +++. .|+||.|.|..+.
T Consensus 28 V~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~ 106 (131)
T 2m2b_A 28 LRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAK 106 (131)
T ss_dssp ECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECC
T ss_pred EeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECC
Confidence 4455544444444444433 23644 9999998 799999999999999 9999996 8888 9999999997775
Q ss_pred c
Q psy16116 415 G 415 (612)
Q Consensus 415 ~ 415 (612)
.
T Consensus 107 ~ 107 (131)
T 2m2b_A 107 G 107 (131)
T ss_dssp C
T ss_pred C
Confidence 4
No 292
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=1.2e-10 Score=99.77 Aligned_cols=75 Identities=13% Similarity=0.021 Sum_probs=57.2
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCee-eEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceE----EEEec
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLG-GVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRY----IEVTK 412 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~-~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~----IeV~~ 412 (612)
+++|+|||.+.++++|+++|.. +.+. +|+++.++ +|+++|||||+|.+.++|++|++ +|+..++|+. |+|..
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~ 90 (99)
T 2div_A 11 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNY 90 (99)
T ss_dssp EEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEee
Confidence 3445555555555555554443 3477 89999886 68999999999999999999998 7999999998 88876
Q ss_pred cCc
Q psy16116 413 ANG 415 (612)
Q Consensus 413 s~~ 415 (612)
+..
T Consensus 91 a~~ 93 (99)
T 2div_A 91 ATY 93 (99)
T ss_dssp TTC
T ss_pred cCC
Confidence 653
No 293
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.05 E-value=6.2e-11 Score=99.84 Aligned_cols=75 Identities=19% Similarity=0.098 Sum_probs=59.0
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+|||.+.++++|+++|.. +.+.+|+++.++. |+++|||||+|.+.+ |++|++ +|+..++||.|.|..+...
T Consensus 3 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 3456667766666666666554 4588999998875 899999999999999 999997 7999999999999877653
No 294
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.05 E-value=1.6e-10 Score=101.80 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=60.1
Q ss_pred cceecCCCHHHHHhhHh---hcccc-cCeeeEEEeeCCC----CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEe
Q psy16116 341 CPLVQNIWLSLLLNTIP---GYEQV-LGLGGVALCLSAF----GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVT 411 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fk---eff~~-~~v~~V~ii~d~~----GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~ 411 (612)
+++|+|||++.++++|+ ++|.. +.+.+|+|..+.. ++++|||||+|.+.++|++||+ +|+..|+||.|.|.
T Consensus 17 ~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 96 (111)
T 2cpi_A 17 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS 96 (111)
T ss_dssp CEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45566676666666665 55554 4588999988763 3677999999999999999998 69999999999998
Q ss_pred ccCcc
Q psy16116 412 KANGE 416 (612)
Q Consensus 412 ~s~~~ 416 (612)
.+..+
T Consensus 97 ~a~~k 101 (111)
T 2cpi_A 97 LGTTK 101 (111)
T ss_dssp SCCCC
T ss_pred ecccc
Confidence 87654
No 295
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.05 E-value=1.7e-10 Score=116.29 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=65.9
Q ss_pred cccEEEEeCCCCCC---------CHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-h
Q psy16116 437 AQVIIRMRGLPYEC---------TAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-K 506 (612)
Q Consensus 437 ~~~~VfV~nLP~s~---------te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~ 506 (612)
...+|||+||++++ +|++|+++|+.|| .++.|+|+. ++|||||+|.+.++|++|++ +
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG--------~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am 199 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLG--------DIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAM 199 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTS--------CEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHH
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccC--------CEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHh
Confidence 45789999999998 7999999999999 457799883 68999999999999999996 8
Q ss_pred CCccc------------CCEEEEEEecch
Q psy16116 507 HKESI------------GIRYIELFRSTT 523 (612)
Q Consensus 507 ~~~~i------------ggR~IeV~~as~ 523 (612)
++..| +||.|.|..+..
T Consensus 200 ~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 200 SNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp TTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred CCCEEeccccccccccCCCCEEEEEEccC
Confidence 99999 899999999864
No 296
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.04 E-value=2.1e-10 Score=103.92 Aligned_cols=71 Identities=15% Similarity=0.060 Sum_probs=54.3
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEec
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTK 412 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~ 412 (612)
++|+|||.+.++++|+++|.. +.+..|+++.++ +|+++|||||+|.+.++|++|++ +++..|+||.|+|..
T Consensus 66 l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 66 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp EEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 335555554444444444433 358899998884 58999999999999999999996 799999999999965
No 297
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.04 E-value=1.8e-10 Score=106.85 Aligned_cols=73 Identities=22% Similarity=0.170 Sum_probs=56.7
Q ss_pred eecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 343 LVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 343 lV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+|+||+++.++++|+++|.. +.+.+|+|+.++ +|+++|||||+|.+.++|++||+ +|+..|+||.|.|..+..
T Consensus 74 ~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 74 KVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 34555544444444444433 348899999886 69999999999999999999997 799999999999987764
No 298
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=2.1e-10 Score=101.35 Aligned_cols=74 Identities=18% Similarity=0.116 Sum_probs=54.9
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~ 415 (612)
|+|+||+++.++++|+++|.. +.+.+|+|+.++ +|+++|||||+|.+.++|++||+..+..|+|+.|.|..+..
T Consensus 20 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 20 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 95 (116)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTT
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEccc
Confidence 334445444444444444433 348899999886 48999999999999999999998544489999999988754
No 299
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.03 E-value=3.9e-11 Score=103.37 Aligned_cols=64 Identities=19% Similarity=0.123 Sum_probs=49.1
Q ss_pred HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116 350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~ 416 (612)
++++++|+.|+. +.++.+....+|+++|||||+|.+.++|++||++++..|+||.|.|..+...
T Consensus 32 ~~l~~~F~~~G~---v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 32 AELKVAISELFA---KNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGR 95 (101)
T ss_dssp HHHHHHHHHHHH---HHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCC
T ss_pred HHHHHHHHHhCC---cceEEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCC
Confidence 555555655554 4442233334689999999999999999999999999999999999877643
No 300
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.03 E-value=2.1e-10 Score=102.65 Aligned_cols=75 Identities=13% Similarity=0.061 Sum_probs=59.3
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+|+|+||+++.++++|+++|.. +.+.+|.|+.++ +|+++|||||+|.+.++|++||+ +|+..|+|+.|.|..+..
T Consensus 24 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 101 (126)
T 3ex7_B 24 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 101 (126)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Confidence 4446666665555555555543 358899998886 68999999999999999999996 899999999999987754
No 301
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.02 E-value=1.3e-10 Score=96.92 Aligned_cols=75 Identities=16% Similarity=0.101 Sum_probs=58.1
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-C-CCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-G-RRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-G-rsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+++|+|||.+.++++|+++|.. +.+.+|.++.+.+ + +++|||||+|.+.++|++|++ +|+..++|+.|.|..+..
T Consensus 6 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 6 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 4446666666555555555544 4588899988874 3 489999999999999999998 799999999999977643
No 302
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=3.1e-10 Score=98.87 Aligned_cols=78 Identities=17% Similarity=0.009 Sum_probs=59.5
Q ss_pred cccceecCCCHHHHHhhHhhcccc-cC-eeeEEEe-eCC-CCCCcceEEEEeCCHHHHHHHHH-hC--CCccCceEEEEe
Q psy16116 339 ALCPLVQNIWLSLLLNTIPGYEQV-LG-LGGVALC-LSA-FGRRNGEAIVRFIDQEHRDMALK-RH--KHHIDKRYIEVT 411 (612)
Q Consensus 339 ~l~vlV~nLp~~~~e~~fkeff~~-~~-v~~V~ii-~d~-~GrsrG~AFVeF~S~EdA~kAL~-~n--g~~IggR~IeV~ 411 (612)
..+++|+|||++.++++|+++|.. +. +.+|.++ .++ .|+++|||||+|.+.++|++|++ ++ +..++||.|.|.
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~ 87 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD 87 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEE
Confidence 335567777766666666665554 34 8888887 554 47899999999999999999998 54 488999999998
Q ss_pred ccCcc
Q psy16116 412 KANGE 416 (612)
Q Consensus 412 ~s~~~ 416 (612)
.+...
T Consensus 88 ~a~~~ 92 (109)
T 2dis_A 88 WAEPE 92 (109)
T ss_dssp ESCSS
T ss_pred EcCCC
Confidence 77653
No 303
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=4.7e-10 Score=98.61 Aligned_cols=74 Identities=11% Similarity=0.053 Sum_probs=58.2
Q ss_pred ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccC--------ceEEE
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHID--------KRYIE 409 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Ig--------gR~Ie 409 (612)
.+++|+|||.+.++++|+++|.. +.+..|+|+.+++|+++|||||+|.+.++|++||+ +|+..|+ ++.|.
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~ 105 (114)
T 1x5o_A 26 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLL 105 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCcee
Confidence 35557777777666667766654 45899999999999999999999999999999997 8998885 45555
Q ss_pred Eecc
Q psy16116 410 VTKA 413 (612)
Q Consensus 410 V~~s 413 (612)
|..+
T Consensus 106 v~~a 109 (114)
T 1x5o_A 106 CKFS 109 (114)
T ss_dssp EEEC
T ss_pred EEcc
Confidence 5444
No 304
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.01 E-value=1.5e-10 Score=115.37 Aligned_cols=76 Identities=12% Similarity=0.044 Sum_probs=60.5
Q ss_pred cceecCCCHHHHHhhHhhcccc-c--CeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-L--GLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~--~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+|||+||+++.++++|+++|.. + .+.+|+|++++ +|+++|||||+|.+.++|++||+ +|+..|+||.|+|..+..
T Consensus 70 ~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 70 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 3445666665555555555544 3 48899999996 69999999999999999999998 899999999999987765
Q ss_pred c
Q psy16116 416 E 416 (612)
Q Consensus 416 ~ 416 (612)
.
T Consensus 150 ~ 150 (229)
T 3q2s_C 150 Q 150 (229)
T ss_dssp H
T ss_pred C
Confidence 4
No 305
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=6.2e-10 Score=97.23 Aligned_cols=74 Identities=16% Similarity=0.016 Sum_probs=54.6
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHH-HhCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMAL-KRHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL-~~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+||+.+.++++|+++|.. +.+..|.|.. +++++|||||+|.+.++|++|| .+|+..|+|+.|.|..+...
T Consensus 24 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 24 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 3345555555555555544443 3477888854 4668999999999999999999 48999999999999877653
No 306
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.99 E-value=2.5e-10 Score=101.93 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=55.5
Q ss_pred ccceecCCCHHHHHhhHhhcccc-c-CeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQV-L-GLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~-~-~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
.+++|+|||++.++++|+++|.. + .+..+.+.. ++++|||||+|++.++|++|++ +|+..++||.|+|..+..
T Consensus 29 ~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~---~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 29 YRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT---RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp EEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS---CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc---CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 35556667666666666665554 3 366776642 3589999999999999999996 799999999999987654
No 307
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.99 E-value=5.1e-10 Score=104.06 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=59.4
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+|+|+||+++.++++|+++|.. +.+..|+|+.+++ |+++|||||+|.+.++|++||+ +++..|+|+.|.|..+..
T Consensus 41 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 4445566655555555555543 3588999999875 8899999999999999999998 799999999999988764
No 308
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.97 E-value=3.1e-10 Score=104.00 Aligned_cols=75 Identities=21% Similarity=0.156 Sum_probs=59.3
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+|+|+|||.+.++++|+++|.. +.+..|+|+.++ +|+++|||||+|.+.++|++||+ +++..|+|+.|.|..+..
T Consensus 49 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 49 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp CEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3446666665555555555544 458899998886 68999999999999999999997 799999999999987754
No 309
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.97 E-value=4.4e-10 Score=109.16 Aligned_cols=74 Identities=8% Similarity=0.026 Sum_probs=60.3
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccC
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~ 414 (612)
+++|+|||++.++++|+++|.. |.+.+|+|.++.+|+++|||||+|++.++|++|++..+..++||.|.|....
T Consensus 111 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 111 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 185 (193)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred EEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence 4556666666666666665554 4589999999999999999999999999999999977789999999997554
No 310
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.97 E-value=9.1e-10 Score=97.08 Aligned_cols=69 Identities=12% Similarity=-0.050 Sum_probs=54.8
Q ss_pred HHHhhHhhcccc-cCeeeEEEeeCCC--CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchh
Q psy16116 351 LLLNTIPGYEQV-LGLGGVALCLSAF--GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFI 419 (612)
Q Consensus 351 ~~e~~fkeff~~-~~v~~V~ii~d~~--GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~ 419 (612)
++++++++.|.. |.+.+|+|.++++ |+++|||||+|.+.++|++|++ +|+..++||.|.|..+....|.
T Consensus 25 d~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~~f~ 97 (105)
T 2pe8_A 25 DLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFR 97 (105)
T ss_dssp -CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCHHHhh
Confidence 344555543332 4589999998864 6899999999999999999996 8999999999999888766554
No 311
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.96 E-value=1.4e-09 Score=99.16 Aligned_cols=66 Identities=11% Similarity=0.041 Sum_probs=50.1
Q ss_pred HHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 349 LSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 349 ~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
.+++++.|.++|.. |.+.+|.+. .+|+++|||||+|.+.++|++|++ +|+..|+||.|.|..+...
T Consensus 43 e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 43 KEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETP 110 (127)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCC
T ss_pred HHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCc
Confidence 35555433344433 347777664 468999999999999999999996 8999999999999877653
No 312
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.51 E-value=6.4e-11 Score=104.83 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=64.2
Q ss_pred ccceecCCCHHHHHhhHhhcccc-cCeee--------EEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEE
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGG--------VALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYI 408 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~--------V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~I 408 (612)
.+++|+||+++.++++|+++|.. +.+.. |+++.++ +|+++|||||+|.+.++|++|++ +|+..++||.|
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (116)
T 2lcw_A 8 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPI 87 (116)
Confidence 35668888888887777777765 44666 8888885 58999999999999999999998 79999999999
Q ss_pred EEeccCccc
Q psy16116 409 EVTKANGED 417 (612)
Q Consensus 409 eV~~s~~~e 417 (612)
.|..+....
T Consensus 88 ~V~~a~~~~ 96 (116)
T 2lcw_A 88 KVSFATRRA 96 (116)
Confidence 998876543
No 313
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=5.3e-10 Score=99.14 Aligned_cols=71 Identities=6% Similarity=0.045 Sum_probs=53.9
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hC--CCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RH--KHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~n--g~~IggR~IeV~~s~~~ 416 (612)
+++|+|||++.++++|+++|.. +.+.+|+|+++ +|||||+|++.++|++|++ ++ +..|+||.|.|..+..+
T Consensus 18 ~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 18 VIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp EEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 4456666666555555555544 45889998864 7999999999999999998 44 46899999999887654
No 314
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.95 E-value=6.4e-10 Score=93.71 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=55.2
Q ss_pred cceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+|||++.++++++++|....+.++++. +++|||||+|.+.++|++|++ +|+..++||.|.|..+...
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 7 GILVKNLPQDSNCQEVHDLLKDYDLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CEEEESCCSSCCHHHHHHHTCSSCCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHhhCCeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 4456666666666666665554356777773 689999999999999999997 8999999999999877553
No 315
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.95 E-value=3.2e-10 Score=96.53 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=54.4
Q ss_pred cceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+++|+|||++.++++|+++|... ..|+++ ..+|+++|||||+|.+.++|++|++ +++..|+|+.|.|..+..
T Consensus 18 ~l~V~nL~~~~t~~~l~~~F~~~--g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 18 TLLAKNLSFNITEDELKEVFEDA--LEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp EEEEESCCSSCCHHHHHHHHCSE--EEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred EEEEeCCCCCCCHHHHHHHHhhC--CcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 45566666666666666655532 233444 5578999999999999999999998 799999999999987754
No 316
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.94 E-value=1.1e-09 Score=96.32 Aligned_cols=71 Identities=13% Similarity=0.026 Sum_probs=55.0
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCC--ccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKH--HIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~--~IggR~IeV~~s~~~ 416 (612)
+++|+|||++.++++|+++|.. |.+.+|++++ +||||||+|++.++|.+|++ +++. .|+||.|.|..++.+
T Consensus 23 ~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 23 VVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred EEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 5567777776666666665554 5588888873 57999999999999999997 5655 488999999887654
No 317
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.93 E-value=8.7e-10 Score=94.85 Aligned_cols=68 Identities=9% Similarity=-0.009 Sum_probs=50.3
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~ 414 (612)
++|+||+.+.++++|+++|.. +.+.+|++. +++|||||+|.+.++|++|+. +|+..++|+.|.|..+.
T Consensus 30 l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 30 AYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred EEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 334555544444444444433 347788886 578999999999999999996 79999999999997664
No 318
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.93 E-value=5.9e-09 Score=93.46 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=66.3
Q ss_pred ccEEEEeCCCCCC----------CHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-h
Q psy16116 438 QVIIRMRGLPYEC----------TAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-K 506 (612)
Q Consensus 438 ~~~VfV~nLP~s~----------te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~ 506 (612)
+.+|.|+|+=-.- -++||++.|++|| .+.+|.|.++ .++|||||+|.+.++|++|++ +
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG--------~V~~v~i~~~---~~~G~~fV~f~~~e~A~~Ai~~l 75 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHG--------GVIHIYVDKN---SAQGNVYVKCPSIAAAIAAVNAL 75 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTT--------CCSEEEECTT---CTTCCEEEECSSHHHHHHHHHHH
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccC--------CEEEEEEecC---CCcEEEEEEECCHHHHHHHHHHh
Confidence 4578888863322 2468999999999 3456888654 258999999999999999996 8
Q ss_pred CCcccCCEEEEEEecchHHHHHHhh
Q psy16116 507 HKESIGIRYIELFRSTTAEVQQVLN 531 (612)
Q Consensus 507 ~~~~iggR~IeV~~as~~e~~~~~~ 531 (612)
||..++||.|.|..+....+...-.
T Consensus 76 nG~~f~GR~i~v~~~~~~~y~~~fp 100 (114)
T 3s6e_A 76 HGRWFAGKMITAAYVPLPTYHNLFP 100 (114)
T ss_dssp TTCEETTEECEEEEECHHHHHHHCG
T ss_pred CCCEECCEEEEEEEEcHHHHHHhCc
Confidence 9999999999999998887765433
No 319
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.92 E-value=1.3e-09 Score=95.44 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=53.1
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCc-----eEEEEecc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDK-----RYIEVTKA 413 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Igg-----R~IeV~~s 413 (612)
+++|+|||++.++++|+++|.. +.+..|.|+.+ |||||+|.+.++|++||+ +|+..|+| +.|+|..+
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 17 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp EEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 3445555555555555554443 34888888765 899999999999999998 79999999 99999887
Q ss_pred Ccc
Q psy16116 414 NGE 416 (612)
Q Consensus 414 ~~~ 416 (612)
...
T Consensus 91 ~~~ 93 (108)
T 1x4c_A 91 GPR 93 (108)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 320
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.92 E-value=3.4e-10 Score=96.43 Aligned_cols=74 Identities=11% Similarity=0.075 Sum_probs=54.7
Q ss_pred cceecCCCHHHHHhhHh----hcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116 341 CPLVQNIWLSLLLNTIP----GYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fk----eff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~ 414 (612)
+++|+|||.+.++++|+ ++|.. +.+.+|++.. +|+++|||||+|.+.++|++|++ +++..++|+.|.|..+.
T Consensus 10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (97)
T 1nu4_A 10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 87 (97)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEcc
Confidence 34455555544444444 55544 4477777763 57889999999999999999997 79999999999998776
Q ss_pred cc
Q psy16116 415 GE 416 (612)
Q Consensus 415 ~~ 416 (612)
..
T Consensus 88 ~~ 89 (97)
T 1nu4_A 88 TD 89 (97)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 321
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=2.9e-09 Score=93.32 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEEEecc
Q psy16116 448 YECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRST 522 (612)
Q Consensus 448 ~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV~~as 522 (612)
..+++++|+++|++|| .+..|+|+ ++++|||||+|.+.++|++|++. ...+.||.|.|..+.
T Consensus 27 ~~~te~~L~~~F~~~G--------~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYG--------EVLNLVLS----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWLE 88 (100)
T ss_dssp CSCCHHHHHHHHHTTS--------CEEEEEEE----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECSS
T ss_pred CCCCHHHHHHHHHhcC--------CEEEEEEc----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEcc
Confidence 4689999999999999 44668887 58999999999999999999986 344678999998754
No 322
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.91 E-value=9.2e-10 Score=105.56 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=54.4
Q ss_pred HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
++++++|+.|+ .+..|.|..+++|+++|||||+|.+.++|++|++ +++..|+|+.|.|..+...
T Consensus 103 ~~L~~~F~~~G---~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 103 ADIQELFAEFG---TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp HHHHHHHHHTS---CCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred HHHHHHHHhcC---CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 55555555554 4789999999899999999999999999999998 8999999999999877543
No 323
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=2e-09 Score=94.30 Aligned_cols=72 Identities=7% Similarity=0.051 Sum_probs=55.9
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-h--CCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-R--HKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~--ng~~IggR~IeV~~s~~~ 416 (612)
+++|+|||++.++++|+++|.. +.+.+|.|+++ +|||||+|++.++|++|++ + ++..++||.|.|..+...
T Consensus 17 ~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 17 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp EEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 4557777777777777766654 45888888653 7999999999999999997 3 567799999999887654
Q ss_pred c
Q psy16116 417 D 417 (612)
Q Consensus 417 e 417 (612)
+
T Consensus 92 ~ 92 (101)
T 2cq1_A 92 E 92 (101)
T ss_dssp S
T ss_pred c
Confidence 3
No 324
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.88 E-value=1.1e-09 Score=91.13 Aligned_cols=66 Identities=11% Similarity=0.097 Sum_probs=48.3
Q ss_pred ceecCCCH----HHHHhhHhhcccc-c-------CeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEE
Q psy16116 342 PLVQNIWL----SLLLNTIPGYEQV-L-------GLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIE 409 (612)
Q Consensus 342 vlV~nLp~----~~~e~~fkeff~~-~-------~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~Ie 409 (612)
++|+|||+ ++++++|+.|+.. + .+.++++.+ ++|||||+|.+.++|++|+.+|+..++||.|.
T Consensus 9 l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-----~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 83 (87)
T 2hzc_A 9 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 83 (87)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-----SSSEEEEEESSHHHHHHHGGGTTCEETTEECE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-----CCcEEEEEcCCHHHHHHHHhcCCCEECCeEEE
Confidence 34444444 5555555555211 2 467777753 48999999999999999998899999999999
Q ss_pred Eec
Q psy16116 410 VTK 412 (612)
Q Consensus 410 V~~ 412 (612)
|.+
T Consensus 84 V~r 86 (87)
T 2hzc_A 84 IRR 86 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 864
No 325
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=1.7e-09 Score=97.91 Aligned_cols=72 Identities=6% Similarity=0.057 Sum_probs=56.6
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hC--CCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RH--KHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~n--g~~IggR~IeV~~s~~~ 416 (612)
+++|+|||++.++++|+++|.. +.+.+|+|+.+ +|||||+|++.++|++|++ ++ +..|+||.|.|..+...
T Consensus 33 ~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 33 VIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 5567777777777777766654 45889998864 7999999999999999997 44 46799999999888665
Q ss_pred c
Q psy16116 417 D 417 (612)
Q Consensus 417 e 417 (612)
+
T Consensus 108 ~ 108 (119)
T 2ad9_A 108 E 108 (119)
T ss_dssp S
T ss_pred C
Confidence 4
No 326
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=1.5e-09 Score=95.41 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=51.9
Q ss_pred cceecCCCH----HHHHhhHhhcccccCe-eeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116 341 CPLVQNIWL----SLLLNTIPGYEQVLGL-GGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN 414 (612)
Q Consensus 341 ~vlV~nLp~----~~~e~~fkeff~~~~v-~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~ 414 (612)
+++|+|||. ++++++|+.|+....+ ..+.+. +|+++|||||+|.+.++|++|++ +++..|+|+.|.|..+.
T Consensus 27 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 27 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp EEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 344555554 4555555555542111 334443 78999999999999999999997 79999999999998876
Q ss_pred cc
Q psy16116 415 GE 416 (612)
Q Consensus 415 ~~ 416 (612)
..
T Consensus 104 ~~ 105 (115)
T 2cpx_A 104 NK 105 (115)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 327
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=2.8e-09 Score=89.87 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=51.6
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+||+.+.++++|+++|.. +.+.+|++. +|||||+|.+.++|++|++ +++..++|+.|.|..+...
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 10 KLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp EEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 3445555555555555544443 347888886 6899999999999999995 8999999999999887654
No 328
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=1.3e-09 Score=93.36 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=46.5
Q ss_pred HHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 349 LSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 349 ~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
.++++++|+.|+. +. ++++. ++++|||||+|.+.++|++|++ +|+..|+|+.|.|..+..
T Consensus 33 ~~~l~~~F~~~G~---v~-~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 33 VSDLKRALRELGS---VP-LRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp HHHHHHHHHHTTC---CC-SEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred HHHHHHHHHhcCC---EE-EEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 3555666655554 33 45543 4789999999999999999996 799999999999987754
No 329
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.88 E-value=2.2e-09 Score=94.48 Aligned_cols=67 Identities=19% Similarity=0.160 Sum_probs=50.5
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
++|+||+++.++++|+++|.. +.+.+|.++ +|||||+|.+.++|++|++ +++..++|+.|.|..+..
T Consensus 34 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 34 LFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp EEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 335555555444445444443 347788886 7999999999999999997 799999999999987754
No 330
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.87 E-value=2.2e-09 Score=101.07 Aligned_cols=75 Identities=17% Similarity=0.050 Sum_probs=58.8
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+|+|+||+++.++++|+++|.. +.+..|.|+.++ +|+++|||||+|.+.++|++||+ +|+..|+|+.|.|..+..
T Consensus 74 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 151 (165)
T 1rk8_A 74 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 151 (165)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 4445566655555555554443 458899999885 68899999999999999999997 899999999999977654
No 331
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.87 E-value=1.3e-09 Score=95.70 Aligned_cols=51 Identities=14% Similarity=0.170 Sum_probs=46.6
Q ss_pred cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEecc
Q psy16116 363 LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKA 413 (612)
Q Consensus 363 ~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s 413 (612)
|.+.+|+|.++..|+++|||||+|.+.++|++|++ +||..++||.|.|..+
T Consensus 52 G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 52 GEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp CCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred CceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 56999999999889999999999999999999996 8999999999988643
No 332
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.86 E-value=2.9e-09 Score=91.34 Aligned_cols=71 Identities=13% Similarity=0.056 Sum_probs=53.7
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+|||.+.++++|+++|.. +.+..|++.+ ++|||||+|.+.++|++|++ +++..|+|+.|.|..+...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 17 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 3445556555555555555544 3478888863 47999999999999999995 7999999999999887654
No 333
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.86 E-value=2.6e-09 Score=93.96 Aligned_cols=72 Identities=10% Similarity=0.006 Sum_probs=52.2
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCC--CccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHK--HHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng--~~IggR~IeV~~s~~~ 416 (612)
+++|+||+++.++++|+++|.. +.+.+|+|++ .+|||||+|++.++|++|++ +++ ..|+||.|.|..+...
T Consensus 17 ~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 17 VVHVRGLCESVVEADLVEALEKFGTICYVMMMP-----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp EEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 4445556655555555555443 4588888864 37999999999999999997 443 4599999999887664
Q ss_pred c
Q psy16116 417 D 417 (612)
Q Consensus 417 e 417 (612)
+
T Consensus 92 ~ 92 (104)
T 1wex_A 92 R 92 (104)
T ss_dssp S
T ss_pred c
Confidence 4
No 334
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=2.6e-09 Score=93.41 Aligned_cols=71 Identities=13% Similarity=0.048 Sum_probs=52.4
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+||+.+.++++|+++|.. +.+..|+|+.+ +|||||+|.+.++|++|++ +++..|+|+.|.|..+...
T Consensus 27 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 27 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 3345555544444444444433 34888888765 7999999999999999995 7999999999999877654
No 335
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=3e-09 Score=88.36 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=49.9
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-h-CCCccCceEEEEecc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-R-HKHHIDKRYIEVTKA 413 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~-ng~~IggR~IeV~~s 413 (612)
+++|+|||.+.++++|+++|.. +.+.+|+++. ++|||||+|.+.++|++|++ + ++..++|+.|.|..+
T Consensus 14 ~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 14 TLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred EEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 3345555554444444444433 3488888875 47999999999999999998 6 889999999988654
No 336
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.85 E-value=3.3e-09 Score=91.43 Aligned_cols=56 Identities=9% Similarity=0.143 Sum_probs=45.4
Q ss_pred HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
++++++|+.|+ .+.+|++ ++|||||+|.+.++|++|++ +++..++|+.|.|..+..
T Consensus 38 ~~L~~~F~~~G---~v~~v~i-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 38 EDLFRIFSPYG---HIMQINI-------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp HHHHHHHGGGS---CEEEEEE-------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred HHHHHHHHhcC---CEEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 55555555554 4778877 37999999999999999997 899999999999977643
No 337
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.85 E-value=3.1e-09 Score=90.82 Aligned_cols=70 Identities=10% Similarity=0.023 Sum_probs=51.4
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccC--ceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHID--KRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Ig--gR~IeV~~s~~ 415 (612)
+++|+||+.+.++++|+++|.. +.+.+|.+..+ +|||||+|.+.++|++|++ +|+..|+ |+.|.|..+..
T Consensus 19 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 19 RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 3445555555444444444443 34788887643 7899999999999999997 8999999 99999987754
No 338
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=2.7e-09 Score=90.79 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=50.9
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~ 416 (612)
++|+|||++.++++|+++|.. +.+.+| +....+|+ ||||+|.+.++|++||++++..|+||.|.|..+...
T Consensus 11 l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 11 VFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp EEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCS
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcC
Confidence 345555555555555555543 346666 33333454 999999999999999999999999999999876544
No 339
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.84 E-value=4.1e-09 Score=92.79 Aligned_cols=73 Identities=8% Similarity=0.046 Sum_probs=59.2
Q ss_pred CCHHHHHhhHhhcccc-cCeeeEEEeeCCCC---CCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchh
Q psy16116 347 IWLSLLLNTIPGYEQV-LGLGGVALCLSAFG---RRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFI 419 (612)
Q Consensus 347 Lp~~~~e~~fkeff~~-~~v~~V~ii~d~~G---rsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~ 419 (612)
..++++++++++.|.. +.+.+|+|.++.++ +++|+|||+|++.++|++|++ +||..++||.|.|.....+.+.
T Consensus 23 ~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~f~ 100 (105)
T 3v4m_A 23 EEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYH 100 (105)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHHHHh
Confidence 3456677777754443 66999999888754 689999999999999999996 8999999999999887765543
No 340
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=4.1e-09 Score=88.83 Aligned_cols=69 Identities=10% Similarity=0.042 Sum_probs=51.0
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+|||.+.++++|+++|.. +.+..|+++ +|||||+|.+.++|++|++ +++..++|+.|.|..+...
T Consensus 11 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 11 KIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 3445555555544545444443 347888885 4599999999999999997 8999999999999877653
No 341
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=3e-09 Score=94.13 Aligned_cols=71 Identities=13% Similarity=-0.036 Sum_probs=50.6
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC----CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF----GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA 413 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~----GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s 413 (612)
+++|+||+++.++++|+++|.. +.+. ++++.+.. |+++|||||+|++.++|++||+.- ..++|+.+.+..+
T Consensus 10 ~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~~~ 85 (114)
T 2dnl_A 10 KVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCVSS 85 (114)
T ss_dssp CEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEECC
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEeccC
Confidence 4556667766666666666655 3355 67766653 799999999999999999999843 2367777766433
No 342
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.84 E-value=3.5e-09 Score=93.12 Aligned_cols=70 Identities=9% Similarity=-0.009 Sum_probs=56.3
Q ss_pred cceecCCCH-HHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCC--CccCceEEEEeccCc
Q psy16116 341 CPLVQNIWL-SLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHK--HHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~-~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng--~~IggR~IeV~~s~~ 415 (612)
+++|+|||+ +.++++|+++|.. +.+.+|+|+++ +|||||+|++.++|++|++ +++ ..|+||.|.|..+..
T Consensus 17 ~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 17 VVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp EEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred EEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 566888888 7777777776665 55899998753 5899999999999999997 454 459999999987764
No 343
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.82 E-value=4.6e-09 Score=111.11 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=53.1
Q ss_pred cccEEEEeC--CCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116 437 AQVIIRMRG--LPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI 511 (612)
Q Consensus 437 ~~~~VfV~n--LP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i 511 (612)
...+|||+| |++.+||++|+++|++|| .+++|.+.. +||||||+|.+.++|++|++ +||..+
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G--------~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCG--------LVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTS--------CEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcC--------CeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 456799999 689999999999999999 445666642 57999999999999999996 799876
No 344
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.80 E-value=6.3e-09 Score=90.02 Aligned_cols=68 Identities=15% Similarity=0.104 Sum_probs=50.4
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
++|+||+.+.++++|+++|.. +.+.+|+++ +|||||+|.+.++|++|++ +++..|+|+.|.|..+...
T Consensus 14 l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 14 LFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 345555554444444444433 347788875 5699999999999999998 7999999999999887654
No 345
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.80 E-value=3.4e-09 Score=97.79 Aligned_cols=74 Identities=22% Similarity=0.150 Sum_probs=57.1
Q ss_pred CCcEeecCCCCCCCcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCcc
Q psy16116 325 TPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHI 403 (612)
Q Consensus 325 ~~tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~I 403 (612)
..+|||++++.... .++++++|+.|+ .+.+|+++.+ ++|||||+|.+.++|++|++ +|+..|
T Consensus 73 ~~~l~V~nl~~~~t----------~~~l~~~F~~~G---~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~ 135 (150)
T 2i2y_A 73 DCKVYVGNLGNNGN----------KTELERAFGYYG---PLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTL 135 (150)
T ss_dssp SCEEEEESCCSCCS----------CHHHHHHHHHHS---CEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCS
T ss_pred CCEEEEeCCCCCCC----------HHHHHHHHHhhC---CEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 45677655443322 366666666665 4888998765 68999999999999999997 899999
Q ss_pred CceEEEEeccCc
Q psy16116 404 DKRYIEVTKANG 415 (612)
Q Consensus 404 ggR~IeV~~s~~ 415 (612)
+||.|.|..+..
T Consensus 136 ~g~~l~v~~a~~ 147 (150)
T 2i2y_A 136 CGCRVRVELSNG 147 (150)
T ss_dssp SSSCCEEEECCC
T ss_pred CCeEEEEEEcCC
Confidence 999999977654
No 346
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.80 E-value=2.4e-09 Score=98.03 Aligned_cols=73 Identities=16% Similarity=0.124 Sum_probs=52.1
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeee--------EEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEE
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGG--------VALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEV 410 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~--------V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV 410 (612)
+++|+||+++.++++|+++|.. +.+.. |++. .+|+++|||||+|.+.++|++||. +|+..|+||.|.|
T Consensus 47 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V 124 (143)
T 3egn_A 47 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM--KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVV 124 (143)
T ss_dssp EEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE--EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec--cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4445555555544444444433 22333 3332 478999999999999999999998 8999999999999
Q ss_pred eccCc
Q psy16116 411 TKANG 415 (612)
Q Consensus 411 ~~s~~ 415 (612)
..+..
T Consensus 125 ~~a~~ 129 (143)
T 3egn_A 125 QFARS 129 (143)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 87754
No 347
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=3.1e-08 Score=84.86 Aligned_cols=59 Identities=22% Similarity=0.175 Sum_probs=46.3
Q ss_pred HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
++++++|+.|+. +.+..|++ .+|||||+|.+.++|++|++ +|+..|+|+.|.|..+...
T Consensus 30 ~~l~~~F~~~g~-g~v~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 30 EMIEKEFNNIKP-GAVERVKK-------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp HHHHHHHHTTST-TCEEEEEE-------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred HHHHHHHHhcCC-cceEEEEE-------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 556666666532 34666665 36899999999999999998 8999999999999877653
No 348
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=3e-09 Score=90.06 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=47.6
Q ss_pred eecCCCH----HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCC-CccCceEEEEeccCcc
Q psy16116 343 LVQNIWL----SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHK-HHIDKRYIEVTKANGE 416 (612)
Q Consensus 343 lV~nLp~----~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng-~~IggR~IeV~~s~~~ 416 (612)
+|+||+. ++++++|+.|+.. +..+.+ +++|||||+|.+.++|++|++ +|+ ..|+|+.|.|..+...
T Consensus 12 ~V~nLp~~~t~~~l~~~F~~~G~v--v~~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 12 YIGNLSPAVTADDLRQLFGDRKLP--LAGQVL------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp EEECCCTTCCHHHHHHHHHHTTCC--CSSCEE------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred EEeCCCCCCCHHHHHHHHHHcCCc--eEEEEE------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 3444444 5555555555431 344444 258999999999999999997 898 8999999999877653
No 349
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.78 E-value=3.7e-09 Score=93.37 Aligned_cols=71 Identities=20% Similarity=0.076 Sum_probs=54.9
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+|||++.++++|+++|.. +.+..|.|. +++|||||+|.+.++|++|++ +|+..++||.|.|..+...
T Consensus 12 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 12 VILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-----CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4556666666666666665544 447777775 367999999999999999997 8999999999999877553
No 350
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=1.2e-08 Score=86.36 Aligned_cols=69 Identities=12% Similarity=0.007 Sum_probs=51.1
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+|||.+.++++|+++|.. +.+.+|.++ +|||||+|.+.++|++|++ +|+..|+|+.|.|..+...
T Consensus 12 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 12 KLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp EEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 3445555555555555544443 347788885 4599999999999999996 7999999999999887654
No 351
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.77 E-value=3.4e-09 Score=90.06 Aligned_cols=70 Identities=11% Similarity=-0.004 Sum_probs=49.3
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~ 415 (612)
+++|+|||++.++++|+++|.. +.+.+|+|+++ ++|||||+|++.++|+++.. ....++|+.|.|..+..
T Consensus 13 ~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 13 KVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISNAEP 83 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEECC-
T ss_pred EEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEEcCC
Confidence 4446666666666666665554 45888888763 89999999999999985322 22345699999987754
No 352
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.75 E-value=3.9e-09 Score=93.70 Aligned_cols=69 Identities=13% Similarity=0.092 Sum_probs=48.7
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceE-----EEEecc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRY-----IEVTKA 413 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~-----IeV~~s 413 (612)
+|+|+||+++.++++|+++|.. +.+..|.|+.+ |||||+|++.++|++||+ +|+..|+|+. |+|...
T Consensus 18 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 18 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp CEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 3345555554444444444443 34888888765 999999999999999997 8999999987 666554
Q ss_pred Cc
Q psy16116 414 NG 415 (612)
Q Consensus 414 ~~ 415 (612)
..
T Consensus 92 ~~ 93 (115)
T 3beg_B 92 GP 93 (115)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 353
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=2.6e-08 Score=85.17 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=58.5
Q ss_pred CCCcEeecCCCCCCCcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCc
Q psy16116 324 QTPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHH 402 (612)
Q Consensus 324 ~~~tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~ 402 (612)
...+|||.++ +++.++++++|+.|+. +.+|.| ++++|||||+|.+.++|++||+ +++..
T Consensus 14 ~~~~l~V~n~------------~~t~~~l~~~F~~~G~---i~~v~i-----~~~~g~afV~f~~~~~a~~Ai~~l~g~~ 73 (97)
T 1x5p_A 14 KGNTLYVYGE------------DMTPTLLRGAFSPFGN---IIDLSM-----DPPRNCAFVTYEKMESADQAVAELNGTQ 73 (97)
T ss_dssp CCSEEEEECS------------SCCHHHHHHHHTTTSC---EEEEEE-----ETTTTEEEEEESSHHHHHHHHHHTTTEE
T ss_pred CCCEEEEcCC------------CCCHHHHHHHHhhCCC---EEEEEe-----cCCCCEEEEEECCHHHHHHHHHHhCCCe
Confidence 4567887651 4566778888877764 777777 3688999999999999999995 79999
Q ss_pred cCceEEEEeccCcc
Q psy16116 403 IDKRYIEVTKANGE 416 (612)
Q Consensus 403 IggR~IeV~~s~~~ 416 (612)
++|+.|.|..+...
T Consensus 74 ~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 74 VESVQLKVNIARKQ 87 (97)
T ss_dssp ETTEEEEEECCSSC
T ss_pred ECCeEEEEEECCCC
Confidence 99999999877654
No 354
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.75 E-value=7.4e-09 Score=90.60 Aligned_cols=67 Identities=12% Similarity=0.215 Sum_probs=49.0
Q ss_pred ceecCCCHH-HHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 342 PLVQNIWLS-LLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 342 vlV~nLp~~-~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
++|+||+++ .++++|+++|.. +.+.+|.+ ++|||||+|.+.++|++|++ +++..|+|+.|.|..+..
T Consensus 30 l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 30 VFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp EEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred EEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 334444444 444444444333 34777777 57999999999999999995 899999999999987754
No 355
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.74 E-value=5.3e-09 Score=89.43 Aligned_cols=68 Identities=7% Similarity=0.010 Sum_probs=51.3
Q ss_pred cceecCCCH-HHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWL-SLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~-~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+++|+|||+ +.++++|+++|.. +.+.+|.+. +|||||+|.+.++|++|++ +++..++|+.|.|..+..
T Consensus 12 ~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 12 RLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp EEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 445566665 5555555555443 347788873 7999999999999999998 799999999999977644
No 356
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=7.9e-09 Score=87.85 Aligned_cols=72 Identities=11% Similarity=0.059 Sum_probs=51.3
Q ss_pred ceecCCCHHHHHhhHhhcccc-cCeeeEE-EeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116 342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVA-LCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~-ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~ 416 (612)
++|+|||++.++++|+++|.. +.+.+|+ ++.++. .|.|||+|.+.++|++|++ +|+..++||.|.|..+..+
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 18 LQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred EEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 334555554444444444433 3478884 666543 3459999999999999997 8999999999999887654
No 357
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.73 E-value=4.3e-08 Score=87.73 Aligned_cols=71 Identities=11% Similarity=0.053 Sum_probs=53.4
Q ss_pred cceecCCCHH-HHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-h--CCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLS-LLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-R--HKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~-~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~--ng~~IggR~IeV~~s~~ 415 (612)
+++|+||+++ .++++|+++|.. +.+.+|+|+ +++|||||+|++.++|++|++ + ++..|+||.|.|..+..
T Consensus 27 ~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 27 VIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp EEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred EEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 4556666665 556666655554 458888886 468999999999999999997 4 35569999999987765
Q ss_pred c
Q psy16116 416 E 416 (612)
Q Consensus 416 ~ 416 (612)
.
T Consensus 102 ~ 102 (112)
T 1x4f_A 102 Y 102 (112)
T ss_dssp C
T ss_pred c
Confidence 3
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.70 E-value=5.5e-09 Score=95.99 Aligned_cols=68 Identities=12% Similarity=-0.007 Sum_probs=51.2
Q ss_pred cCCCHHHHHhhHhhcccccCeeeEEEeeCCC-CCCcceEEEEeCC----HHH----HHHHHH---hCCCccCceEEEEec
Q psy16116 345 QNIWLSLLLNTIPGYEQVLGLGGVALCLSAF-GRRNGEAIVRFID----QEH----RDMALK---RHKHHIDKRYIEVTK 412 (612)
Q Consensus 345 ~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~-GrsrG~AFVeF~S----~Ed----A~kAL~---~ng~~IggR~IeV~~ 412 (612)
+.++...++++|+.|| .|.++.++.|++ |+++|||||+|.+ +++ |.+|+. +++..|+||.|+|..
T Consensus 16 ~~tte~~Lk~~Fs~fG---eV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~l 92 (136)
T 2j8a_A 16 TNIQDISIKNYFKKYG---EISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVIL 92 (136)
T ss_dssp CCCCHHHHHHHHHTTS---CCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEE
T ss_pred CCCCHHHHHHHHHhcC---CeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEE
Confidence 3344566666666655 488999999985 8999999999996 433 788887 489999999999976
Q ss_pred cCc
Q psy16116 413 ANG 415 (612)
Q Consensus 413 s~~ 415 (612)
...
T Consensus 93 n~~ 95 (136)
T 2j8a_A 93 NKH 95 (136)
T ss_dssp CCT
T ss_pred Ccc
Confidence 543
No 359
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=1.3e-08 Score=91.52 Aligned_cols=72 Identities=8% Similarity=0.000 Sum_probs=48.0
Q ss_pred cee--cCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCcc-----CceEEEEec
Q psy16116 342 PLV--QNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHI-----DKRYIEVTK 412 (612)
Q Consensus 342 vlV--~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~I-----ggR~IeV~~ 412 (612)
++| +||+++.++++|+++|.. +.+.+|.|.. .+|||||+|++.++|++|++ +|+..+ +|+.+.|..
T Consensus 28 L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 28 LVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp EEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred EEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 445 445554444444444433 3477777752 37999999999999999997 788876 577777755
Q ss_pred cCccch
Q psy16116 413 ANGEDF 418 (612)
Q Consensus 413 s~~~e~ 418 (612)
+....|
T Consensus 103 a~~~p~ 108 (114)
T 2cq2_A 103 VEKVQW 108 (114)
T ss_dssp ESCCCC
T ss_pred cccCcc
Confidence 544433
No 360
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.70 E-value=1.5e-08 Score=96.67 Aligned_cols=73 Identities=10% Similarity=0.061 Sum_probs=54.5
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCc--eEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDK--RYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Igg--R~IeV~~s~~~ 416 (612)
+++|+||+++.++++|+++|.. +.+.+|+|..+ +++|||||+|++.++|++|++ +|+..|.| +.|+|..+...
T Consensus 48 ~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 48 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred EEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 4456666665555555555443 45888888643 367999999999999999997 89999954 99999877654
No 361
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.69 E-value=9.6e-09 Score=92.61 Aligned_cols=70 Identities=11% Similarity=0.021 Sum_probs=55.6
Q ss_pred HHHHhhHhhcc-cccCeeeEEEeeCCC-----CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchh
Q psy16116 350 SLLLNTIPGYE-QVLGLGGVALCLSAF-----GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFI 419 (612)
Q Consensus 350 ~~~e~~fkeff-~~~~v~~V~ii~d~~-----GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~ 419 (612)
+++++++++.| ..+.+.+|+|.++.. |+++|+|||+|++.++|++|++ +||..++||.|.|.....+.|.
T Consensus 36 ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~f~ 112 (118)
T 3ue2_A 36 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFD 112 (118)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHH
T ss_pred HHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcChHhcc
Confidence 34566666433 335699999998754 4678999999999999999996 8999999999999887765553
No 362
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.69 E-value=1.3e-08 Score=110.79 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=59.6
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
+|||+||++++++++|.++|.. +.|..|.|+.++ +|+++|||||+|.+.++|.+||+ +|+..|+|+.|.|..+..
T Consensus 104 ~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 4446666666555555555543 458899998885 68999999999999999999995 799999999999987754
No 363
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=6.3e-09 Score=87.30 Aligned_cols=71 Identities=11% Similarity=0.011 Sum_probs=50.3
Q ss_pred cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116 341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~ 416 (612)
+++|+|||.+.++++|+++|.. +.+.+|+++.+ ++|||||+|.+.++|++|+.. ...++|+.|+|..+...
T Consensus 7 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 7 GVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK 78 (88)
T ss_dssp EEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence 3445666665555555555544 44788888754 789999999999999876543 34568999999877653
No 364
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.64 E-value=6.3e-08 Score=87.09 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=58.2
Q ss_pred CCCcEeecCCCCCCCcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCc
Q psy16116 324 QTPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHH 402 (612)
Q Consensus 324 ~~~tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~ 402 (612)
...+|||+++ +++.++++++|+.|+. +.+|.+. +++|||||+|.+.++|++|++ +++..
T Consensus 38 ~~~~lfVgnl------------~~te~~L~~~F~~~G~---I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~ 97 (121)
T 2bz2_A 38 KGNTLYVYGE------------DMTPTLLRGAFSPFGN---IIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQ 97 (121)
T ss_dssp CCCEEEEECS------------SCCHHHHHHHHSTTCC---CSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCB
T ss_pred CCCEEEEcCC------------CCCHHHHHHHHHccCC---EEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 3567887651 3556777888877765 6677774 688999999999999999995 79999
Q ss_pred cCceEEEEeccCcc
Q psy16116 403 IDKRYIEVTKANGE 416 (612)
Q Consensus 403 IggR~IeV~~s~~~ 416 (612)
++|+.|.|..+...
T Consensus 98 ~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 98 VESVQLKVNIARKQ 111 (121)
T ss_dssp CSSCBCEEEECCSS
T ss_pred ECCeEEEEEEeCCC
Confidence 99999999877654
No 365
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.62 E-value=3.3e-08 Score=90.78 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=58.9
Q ss_pred ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcce-EEEEeCCHHHHHHHHH-hCCCccCc--eEEEEeccC
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGE-AIVRFIDQEHRDMALK-RHKHHIDK--RYIEVTKAN 414 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~-AFVeF~S~EdA~kAL~-~ng~~Igg--R~IeV~~s~ 414 (612)
++++|+||++..+++.|++.|.. +.+.+|++..+ ++|| |||+|.+.++|++|++ +||..|.| +.|+|..+.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 46778888887777777776665 55888888653 4688 9999999999999997 89999977 889998776
Q ss_pred cc
Q psy16116 415 GE 416 (612)
Q Consensus 415 ~~ 416 (612)
..
T Consensus 105 ~~ 106 (130)
T 3zzy_A 105 LT 106 (130)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 366
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=1e-07 Score=84.07 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=49.9
Q ss_pred HHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 350 SLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 350 ~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
++++++|+++|.. +.+.+|.| .++ .++|||||+|.+.++|++|++ +|+..++||.|.|..+..
T Consensus 37 ~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 37 NEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDG 101 (112)
T ss_dssp HHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCS
T ss_pred HHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 4456667665554 55788865 443 489999999999999999996 899999999999987755
No 367
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.60 E-value=5.6e-08 Score=88.49 Aligned_cols=72 Identities=15% Similarity=0.074 Sum_probs=56.6
Q ss_pred ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcce-EEEEeCCHHHHHHHHH-hCCCccCc--eEEEEeccC
Q psy16116 340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGE-AIVRFIDQEHRDMALK-RHKHHIDK--RYIEVTKAN 414 (612)
Q Consensus 340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~-AFVeF~S~EdA~kAL~-~ng~~Igg--R~IeV~~s~ 414 (612)
++++|+||++..+++.|+++|.. +.+.+|+|... +|| |||+|.+.++|++|++ +||..|.| +.|+|..+.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 35667888887777777766655 55888888642 386 9999999999999997 89999977 689998776
Q ss_pred cc
Q psy16116 415 GE 416 (612)
Q Consensus 415 ~~ 416 (612)
..
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 368
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=1.3e-07 Score=85.91 Aligned_cols=82 Identities=11% Similarity=0.126 Sum_probs=67.0
Q ss_pred cccEEEEeCCCCC-CCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCC-HHHHHHHHH-h--CCccc
Q psy16116 437 AQVIIRMRGLPYE-CTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEK-EEEADKALS-K--HKESI 511 (612)
Q Consensus 437 ~~~~VfV~nLP~s-~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s-~edA~kAL~-~--~~~~i 511 (612)
.+..|+|+||+++ +++++|+++|+.|| .+..|.+..+.. +|||.|.+ +++|.+|++ + ++..|
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G--------~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i 83 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHG--------EIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQL 83 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSC--------CEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCT
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcC--------CEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEE
Confidence 5678999999999 99999999999999 456677765543 59999999 899999996 4 57889
Q ss_pred CCEEEEEEecchHHHHHHhh
Q psy16116 512 GIRYIELFRSTTAEVQQVLN 531 (612)
Q Consensus 512 ggR~IeV~~as~~e~~~~~~ 531 (612)
+|..+.+...+-++-+.+.+
T Consensus 84 ~g~~~~~evL~GeeE~~yw~ 103 (121)
T 1owx_A 84 RNKEVTWEVLEGEVEKEALK 103 (121)
T ss_dssp TSSSEEEEECCHHHHHHHHH
T ss_pred eCcEEEEEECCCHHHHHHHH
Confidence 99989998887666555444
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.59 E-value=6.2e-08 Score=86.80 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=56.6
Q ss_pred CHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhh
Q psy16116 348 WLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFIN 420 (612)
Q Consensus 348 p~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~ 420 (612)
.++++++++++.|.. |.+.+|+|.++ .++|+|||+|++.++|++|++ +||..++||.|.|..+....|..
T Consensus 26 ~~~el~edl~~~f~kfG~V~~v~i~~~---~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~ 97 (114)
T 3s6e_A 26 WDTEIKDDVIEECNKHGGVIHIYVDKN---SAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHN 97 (114)
T ss_dssp HHHHHHHHHHHHHTTTTCCSEEEECTT---CTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCEEEEEEecC---CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHHH
Confidence 357777777754444 66888888654 258999999999999999996 89999999999998887766654
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=3.5e-07 Score=80.05 Aligned_cols=63 Identities=16% Similarity=0.334 Sum_probs=51.3
Q ss_pred CCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116 346 NIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE 416 (612)
Q Consensus 346 nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~ 416 (612)
+++.+++++.|+.|+. +.+|+|+ ++++|||||+|++.++|++|++. ...+.+|.|.|..+...
T Consensus 28 ~~te~~L~~~F~~~G~---V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 28 GYSKDVLLRLLQKYGE---VLNLVLS----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWLEGQ 90 (100)
T ss_dssp SCCHHHHHHHHHTTSC---EEEEEEE----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECSSCC
T ss_pred CCCHHHHHHHHHhcCC---EEEEEEc----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEccCC
Confidence 5667888888888875 7888886 57899999999999999999986 44467888999776543
No 371
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.44 E-value=3e-07 Score=89.97 Aligned_cols=70 Identities=14% Similarity=0.059 Sum_probs=60.3
Q ss_pred CCHHHHHHHHhcCCCCccccccCceeEEEeeCC-----CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecch
Q psy16116 450 CTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-----DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTT 523 (612)
Q Consensus 450 ~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-----~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~ 523 (612)
-.++||++.|++|| .+.+|.|+.+. +|+++|++||+|.+.++|.+|++ +||..++||.|.|..+..
T Consensus 141 e~~~dl~~e~~~~G--------~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFG--------AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTS--------CEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccC--------CeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 35789999999999 45678887553 45899999999999999999996 899999999999999887
Q ss_pred HHHH
Q psy16116 524 AEVQ 527 (612)
Q Consensus 524 ~e~~ 527 (612)
.++.
T Consensus 213 ~~f~ 216 (222)
T 3dxb_A 213 ERFD 216 (222)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6654
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=4.5e-07 Score=78.26 Aligned_cols=71 Identities=15% Similarity=0.099 Sum_probs=57.2
Q ss_pred ccEEEEeCCCC----CCCH----HHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCc
Q psy16116 438 QVIIRMRGLPY----ECTA----KQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKE 509 (612)
Q Consensus 438 ~~~VfV~nLP~----s~te----~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~ 509 (612)
+.+|+|.-.+. +.-+ .+|.+.|+.|| +| ..|+|..|+ +||+|.+.++|.+||++|+.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G----~V----i~vr~~~d~-------~fVtF~d~~sAlaAi~mnG~ 71 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFG----EV----ILIRFVEDK-------MWVTFLEGSSALNVLSLNGK 71 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC----CE----EEEEECSSS-------EEEEESSHHHHHHGGGGTTC
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCC----Ce----EEEEEecCC-------EEEEECChHHHHHHHhcCCe
Confidence 45677776662 2223 68999999999 34 558888654 89999999999999999999
Q ss_pred ccCCEEEEEEecch
Q psy16116 510 SIGIRYIELFRSTT 523 (612)
Q Consensus 510 ~iggR~IeV~~as~ 523 (612)
.++||.|+|..+++
T Consensus 72 ~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 72 ELLNRTITIALKSP 85 (91)
T ss_dssp EETTEEEEEEECCC
T ss_pred EeCCeEEEEEeCCC
Confidence 99999999998763
No 373
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.41 E-value=2.9e-07 Score=92.72 Aligned_cols=83 Identities=13% Similarity=0.091 Sum_probs=57.7
Q ss_pred CCCcEeecCCCCCCCcccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCC
Q psy16116 324 QTPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKH 401 (612)
Q Consensus 324 ~~~tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~ 401 (612)
...+|||++|+...+. .+|....+++.|+++|.. +.|.+|+|+. ++|||||+|.+.++|++|++ +++.
T Consensus 133 ~~rtLfVgnL~~~~~~-----~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNS-----KHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp CCCEEEEECTTGGGTT-----CCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCceeecCCCChhhhc-----ccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 4566775554433211 122223366666655544 5588999874 58999999999999999996 8999
Q ss_pred cc------------CceEEEEeccCcc
Q psy16116 402 HI------------DKRYIEVTKANGE 416 (612)
Q Consensus 402 ~I------------ggR~IeV~~s~~~ 416 (612)
.| +|+.|.|..+...
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred EEeccccccccccCCCCEEEEEEccCC
Confidence 88 8999999887653
No 374
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=3.3e-07 Score=79.82 Aligned_cols=36 Identities=28% Similarity=0.295 Sum_probs=33.4
Q ss_pred ceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 380 GEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 380 G~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
|+|||+|.+.++|++|++ +++..+.||.|+|..+..
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 999999999999999996 899999999999977654
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.24 E-value=1.1e-06 Score=76.36 Aligned_cols=70 Identities=9% Similarity=0.030 Sum_probs=58.1
Q ss_pred cccEEEEeCCCCC------CC---HHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhC
Q psy16116 437 AQVIIRMRGLPYE------CT---AKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKH 507 (612)
Q Consensus 437 ~~~~VfV~nLP~s------~t---e~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~ 507 (612)
.+.+|+|.-++.+ .. -.+|.+.|+.|| +| ..|+|..|+ +||+|.+.++|.+||++|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G----~V----ilvr~v~d~-------~fVtF~d~~sAl~AI~ld 78 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG----TI----VLVRINQGQ-------MLVTFADSHSALSVLDVD 78 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS----CC----SEEEEETTE-------EEEECSCSHHHHHHHHGG
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCC----CE----EEEEEecCc-------EEEEEcChHHHHHHHhcC
Confidence 4578999988754 22 157999999999 34 458998765 999999999999999999
Q ss_pred CcccCCEEEEEEec
Q psy16116 508 KESIGIRYIELFRS 521 (612)
Q Consensus 508 ~~~iggR~IeV~~a 521 (612)
+..++||.|+|..-
T Consensus 79 G~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 79 GMKVKGRAVKISGP 92 (95)
T ss_dssp GSEETTEEEEEECC
T ss_pred CeeeCCeEEEEecc
Confidence 99999999999764
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.07 E-value=3.4e-06 Score=82.42 Aligned_cols=67 Identities=10% Similarity=0.059 Sum_probs=53.3
Q ss_pred HHHHhhHhhcccccCeeeEEEeeCCC-----CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchh
Q psy16116 350 SLLLNTIPGYEQVLGLGGVALCLSAF-----GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFI 419 (612)
Q Consensus 350 ~~~e~~fkeff~~~~v~~V~ii~d~~-----GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~ 419 (612)
+++.+.|..|+ .+.+|++.++.. |+++|++||+|.+.++|++|++ +||..++||.|.+.....++|.
T Consensus 144 ~dl~~e~~~~G---~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f~ 216 (222)
T 3dxb_A 144 GEVTEECGKFG---AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFD 216 (222)
T ss_dssp HHHHHHHTTTS---CEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHHH
T ss_pred HHHHHHHHccC---CeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHhh
Confidence 34444444444 588999886644 3889999999999999999997 8999999999999887766554
No 377
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.94 E-value=1.2e-05 Score=85.07 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=37.3
Q ss_pred CCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCcc
Q psy16116 346 NIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHI 403 (612)
Q Consensus 346 nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~I 403 (612)
+++.+++++.|++|+. +.+|+|.. +||||||+|++.+||++|++ +||..+
T Consensus 31 ~~te~~L~~~F~~~G~---V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 31 GVSRNQLLPVLEKCGL---VDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp TCCHHHHHHHHHTTSC---EEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCHHHHHHHHHhcCC---eEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 3455556666666553 77776632 57999999999999999997 788766
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.93 E-value=1.5e-05 Score=69.11 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=44.3
Q ss_pred HHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116 351 LLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA 413 (612)
Q Consensus 351 ~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s 413 (612)
++.+.|..|+. +..|+++.++ +||+|.+.++|.+||++|+..++||.|+|..-
T Consensus 40 ~L~~~F~~~G~---Vilvr~v~d~-------~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 40 ELMQTLGSYGT---IVLVRINQGQ-------MLVTFADSHSALSVLDVDGMKVKGRAVKISGP 92 (95)
T ss_dssp HHHHHHHHHSC---CSEEEEETTE-------EEEECSCSHHHHHHHHGGGSEETTEEEEEECC
T ss_pred HHHHHHHHCCC---EEEEEEecCc-------EEEEEcChHHHHHHHhcCCeeeCCeEEEEecc
Confidence 35666666664 7788998764 99999999999999999999999999999643
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.83 E-value=2.4e-05 Score=67.44 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=46.2
Q ss_pred HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116 350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~ 415 (612)
.++.+.|..|+. +..|+++.++ +||+|.+.++|.+||++|+..++||.|+|...+.
T Consensus 30 ~~L~~~F~~~G~---Vi~vr~~~d~-------~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 30 DELLQQFASFGE---VILIRFVEDK-------MWVTFLEGSSALNVLSLNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHHHHTTCC---EEEEEECSSS-------EEEEESSHHHHHHGGGGTTCEETTEEEEEEECCC
T ss_pred HHHHHHHHhCCC---eEEEEEecCC-------EEEEECChHHHHHHHhcCCeEeCCeEEEEEeCCC
Confidence 345666666653 7888887653 8999999999999999999999999999987764
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.0003 Score=62.61 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=64.0
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcC-----CCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCcc
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAG-----TENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL-SKHKES 510 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~-----Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL-~~~~~~ 510 (612)
..++|-+-|||.++++..|+.|.+++ | . ...|.+..|..| |+|+|.+...|-||. .++|..
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g----~----i~KI~L~pDH~G-----Aivef~d~~~AgKasLaL~G~e 86 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEK----D----IRKILLVSDFNG-----AIIIFRDSKFAAKMLMILNGSQ 86 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTT----T----CSEEEEETTTTE-----EEEECSCHHHHHHHHHHHSSEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCcc----c----eeEEEEecCCCc-----eEEEEccchhhHHHHhhcCCee
Confidence 35779999999999999999999999 7 2 345777666544 999999999999988 689999
Q ss_pred cCCEEEEEEecchHHHHHH
Q psy16116 511 IGIRYIELFRSTTAEVQQV 529 (612)
Q Consensus 511 iggR~IeV~~as~~e~~~~ 529 (612)
|+||.|++. +-.|+.+.
T Consensus 87 f~gr~Lr~g--Tv~eL~~~ 103 (117)
T 2l9w_A 87 FQGKVIRSG--TINDMKRY 103 (117)
T ss_dssp ETTEEEEEE--CHHHHHHH
T ss_pred ecCeEEEec--CHHHHHhc
Confidence 999998875 45566554
No 381
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.34 E-value=0.00018 Score=65.11 Aligned_cols=74 Identities=8% Similarity=-0.050 Sum_probs=53.7
Q ss_pred CCcccceecCCCHH-HHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCC-HHHHHHHHHh---CCCccCceEEEE
Q psy16116 337 PVALCPLVQNIWLS-LLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFID-QEHRDMALKR---HKHHIDKRYIEV 410 (612)
Q Consensus 337 ~~~l~vlV~nLp~~-~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S-~EdA~kAL~~---ng~~IggR~IeV 410 (612)
+..+.++|+||+.+ .++++|+++|.. +.|..|.+.++.. +|||+|.+ .++|.+|++. ++..|+|..+.+
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 44556777888777 677777766654 4477777765433 69999999 8999999973 467888888887
Q ss_pred eccCc
Q psy16116 411 TKANG 415 (612)
Q Consensus 411 ~~s~~ 415 (612)
...+.
T Consensus 91 evL~G 95 (121)
T 1owx_A 91 EVLEG 95 (121)
T ss_dssp EECCH
T ss_pred EECCC
Confidence 66654
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.09 E-value=0.0015 Score=57.40 Aligned_cols=71 Identities=15% Similarity=0.226 Sum_probs=57.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhc---CCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCE
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEA---GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIR 514 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~---~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR 514 (612)
..+|.|.|||.+++++.|.-||+. -|-. .+++|... . +-|+|+|.+.+.|++.|++..+.|++-
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG------~V~~v~~~--~-----~~AvItF~d~~va~rVL~k~~H~L~~~ 74 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGG------PVLSWQRL--G-----CGGVLTFREPADAERVLAQADHELHGA 74 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCC------CEEEEEEE--T-----TEEEEEESSHHHHHHHHTCSCCBSSSS
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCc------eeeEEEEc--C-----CcEEEEEcChHHHHHHhcCCcceecCe
Confidence 467999999999999999999987 2310 23445542 2 569999999999999999889999999
Q ss_pred EEEEEec
Q psy16116 515 YIELFRS 521 (612)
Q Consensus 515 ~IeV~~a 521 (612)
.|.|++.
T Consensus 75 ~LsV~P~ 81 (104)
T 2dhx_A 75 QLSLRPA 81 (104)
T ss_dssp BCEEEEC
T ss_pred EEEEEcC
Confidence 9999873
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.05 E-value=0.00071 Score=59.52 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=65.2
Q ss_pred CCCCcccceecCCCHHHHHhhHhhcccc------cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEE
Q psy16116 335 GNPVALCPLVQNIWLSLLLNTIPGYEQV------LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYI 408 (612)
Q Consensus 335 ~~~~~l~vlV~nLp~~~~e~~fkeff~~------~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~I 408 (612)
+..++.+|.|.|||.+..++.++-||+. +.+.+|... + +-|+|+|.+.+.|++.|++..+.|.+-.|
T Consensus 4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~----~---~~AvItF~d~~va~rVL~k~~H~L~~~~L 76 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL----G---CGGVLTFREPADAERVLAQADHELHGAQL 76 (104)
T ss_dssp SCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE----T---TEEEEEESSHHHHHHHHTCSCCBSSSSBC
T ss_pred CccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc----C---CcEEEEEcChHHHHHHhcCCcceecCeEE
Confidence 4456667778888877666677666653 335555552 2 67899999999999999988888999888
Q ss_pred EEeccCccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCC
Q psy16116 409 EVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECT 451 (612)
Q Consensus 409 eV~~s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~t 451 (612)
.|+..... ...+++++||+..++
T Consensus 77 sV~P~~~~--------------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPPR--------------------APARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCCC--------------------CCCCCCCCSCCCCCC
T ss_pred EEEcCCCC--------------------CcceEeeecCCCCCC
Confidence 88775432 123488888888765
No 384
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.06 E-value=0.014 Score=53.46 Aligned_cols=89 Identities=15% Similarity=0.163 Sum_probs=61.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEE------EeeCCCCC-----ceeEEEEEeCCHHHHHHHHHhC
Q psy16116 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVL------FVKKPDGK-----ATGDAFVLFEKEEEADKALSKH 507 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~------i~~d~~Gr-----skG~AFV~F~s~edA~kAL~~~ 507 (612)
..|.|-|.|.+.+. .|.+.|+.|| +|++.....+ +......+ ...+-.|+|++..+|++||.+|
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G----~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~N 82 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFG----TILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLEN 82 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGS----CBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTT
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhc----eEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhC
Confidence 45888899766554 5667889999 6653111000 00000001 2467799999999999999999
Q ss_pred CcccCCEEEEEEecchHHHHHHhhh
Q psy16116 508 KESIGIRYIELFRSTTAEVQQVLNK 532 (612)
Q Consensus 508 ~~~iggR~IeV~~as~~e~~~~~~~ 532 (612)
|..|+|.-|-|.+.++..+.+..++
T Consensus 83 G~ii~G~mIGV~Py~~~~ve~l~~~ 107 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYTKDAVERLQKR 107 (132)
T ss_dssp TCEETTEECEEEECCHHHHHHHC--
T ss_pred CeEeCcEEEEEEECCHHHHHHHhcC
Confidence 9999999999999998877765443
No 385
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.01 E-value=0.029 Score=50.54 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=60.4
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCC-EE
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGI-RY 515 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~igg-R~ 515 (612)
....|.|-|.|.+. -..|.+.|+.|| +|++ ... . ....+-.|.|++..+|++||.+|+..++| -.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G----~Iv~----~~~--~---~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~m 88 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYG----NILK----HVM--S---NTGNWMHIRYQSKLQARKALSKDGRIFGESIM 88 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTS----CEEE----EEE--C---SSSSEEEEEESSHHHHHHHHTTTTCEETTTEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhC----cEEE----ecc--C---CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEE
Confidence 45679999999985 677888999999 5632 222 2 23468999999999999999999999985 66
Q ss_pred EEEEecchHHHH
Q psy16116 516 IELFRSTTAEVQ 527 (612)
Q Consensus 516 IeV~~as~~e~~ 527 (612)
|-|.++..+...
T Consensus 89 IGV~p~~d~~vi 100 (119)
T 1wwh_A 89 IGVKPCIDKNVM 100 (119)
T ss_dssp CEEEECCCHHHH
T ss_pred EEEEECCCHHHH
Confidence 899998655544
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.08 E-value=0.054 Score=47.18 Aligned_cols=54 Identities=19% Similarity=0.382 Sum_probs=45.2
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSK 506 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~ 506 (612)
..++++| ++|.+..-.||.++|+.|| .| .|+.+.| --|||.|.+++.|..||..
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fg----gv-----~I~WidD------TsAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFG----NI-----QISWIDD------TSAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTC----SC-----CCEEEET------TEEEEECSCHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccC----CE-----EEEEEcC------CeEEEEecCHHHHHHHHHh
Confidence 4577888 9999999999999999998 33 2677654 2599999999999999973
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.79 E-value=0.051 Score=48.94 Aligned_cols=74 Identities=9% Similarity=-0.032 Sum_probs=53.4
Q ss_pred CcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCc-eEEEEeccCcc
Q psy16116 338 VALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDK-RYIEVTKANGE 416 (612)
Q Consensus 338 ~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~Igg-R~IeV~~s~~~ 416 (612)
.+..|.|.+.+.+....-++.|...+.+.+... .+| ...-.|.|.++.+|++||.+|+..|++ -.|-|.++...
T Consensus 23 ~~~wVtVFGFp~~~~~~VL~~F~~~G~Iv~~~~---~~~--~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~d~ 97 (119)
T 1wwh_A 23 DDTWVTVFGFPQASASYILLQFAQYGNILKHVM---SNT--GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDK 97 (119)
T ss_dssp GGGEEEEECCCGGGHHHHHHHHHTTSCEEEEEE---CSS--SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECCCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhCcEEEecc---CCC--CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECCCH
Confidence 355777888888876666665555445555554 222 348899999999999999999999986 44677776544
No 388
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=93.62 E-value=0.21 Score=44.50 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=45.7
Q ss_pred CCHHHHHhhHhhcccc--cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHH-HhCCCccCceEEEEec
Q psy16116 347 IWLSLLLNTIPGYEQV--LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMAL-KRHKHHIDKRYIEVTK 412 (612)
Q Consensus 347 Lp~~~~e~~fkeff~~--~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL-~~ng~~IggR~IeV~~ 412 (612)
++..-++.++..+-.. +.+..|.+.-|. |=|+|+|++..+|-+|. .++|..|+||.|++-.
T Consensus 33 vndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 33 VSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp CCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 4446778888876221 346677776543 46999999999988887 7999999999998843
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=93.25 E-value=0.28 Score=42.06 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=48.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-C-C-CceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-D-G-KATGDAFVLFEKEEEADKALS-KHKESI 511 (612)
Q Consensus 440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~-G-rskG~AFV~F~s~edA~kAL~-~~~~~i 511 (612)
.|-||+||.+.||+++.+.++.+. ..+...+...+ + + ..-.-|||.|.+.|++..-.+ .+|+.+
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~--------~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMP--------EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCC--------CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcc--------cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 599999999999999999999876 33455665443 1 2 234679999999999888875 476554
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.20 E-value=0.071 Score=46.53 Aligned_cols=53 Identities=19% Similarity=0.390 Sum_probs=43.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh
Q psy16116 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSK 506 (612)
Q Consensus 438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~ 506 (612)
.++++| ++|.+..-.||.++|+.|| .| .|+.+.| .-|||.|.+++.|..||..
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg----gv-----~I~WidD------TsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG----NI-----QISWIDD------TSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE----EE-----EEEEEET------TEEEEEEEEECHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC----CE-----EEEEEcC------CeEEEEecCHHHHHHHHHh
Confidence 356777 9999999999999999998 33 3666654 2599999999999999973
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.65 E-value=0.44 Score=41.89 Aligned_cols=71 Identities=11% Similarity=0.031 Sum_probs=53.9
Q ss_pred cEEEEeCCCCCC-C----HHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccC
Q psy16116 439 VIIRMRGLPYEC-T----AKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIG 512 (612)
Q Consensus 439 ~~VfV~nLP~s~-t----e~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~ig 512 (612)
.+|+|.||+.++ . .+.++++|..++ .+ ...... +|=+-..|.|.+.++|.+|-. +|+..++
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~----~~----~tF~~l-----kSFRRirv~F~~~~~A~~AR~~Lh~~~f~ 72 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYD----KD----TTFQYF-----KSFKRVRINFSNPLSAADARLRLHKTEFL 72 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTC----SS----CEEEEE-----TTTTEEEEECSSTTHHHHHHHTSTTSEET
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhC----cC----cceeec-----CcceEEEEEeCChHHHHHHHHHhccceec
Confidence 569999998865 2 257789999998 22 223333 222357899999999999985 7999999
Q ss_pred CEEEEEEecc
Q psy16116 513 IRYIELFRST 522 (612)
Q Consensus 513 gR~IeV~~as 522 (612)
|+.++|+-+.
T Consensus 73 g~~~r~YFgq 82 (104)
T 1wey_A 73 GKEMKLYFAQ 82 (104)
T ss_dssp TEECEEECCC
T ss_pred CceeEEEecC
Confidence 9999998764
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.48 E-value=0.16 Score=46.51 Aligned_cols=40 Identities=8% Similarity=-0.019 Sum_probs=34.3
Q ss_pred ceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchh
Q psy16116 380 GEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFI 419 (612)
Q Consensus 380 G~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~ 419 (612)
..-.|+|.|..+|++||.+|++.|+|..|=|.+.++....
T Consensus 63 NWikItYds~~~A~rAL~~NG~ii~G~mIGV~Py~~~~ve 102 (132)
T 3p3d_A 63 SWTKITYDNPASAVDALLENGAVFNGVLLGVIPYTKDAVE 102 (132)
T ss_dssp TEEEEEBSSHHHHHHHHTTTTCEETTEECEEEECCHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHhCCeEeCcEEEEEEECCHHHHH
Confidence 4679999999999999999999999988888887665443
No 393
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=84.53 E-value=0.66 Score=50.70 Aligned_cols=62 Identities=15% Similarity=0.146 Sum_probs=41.9
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCccc
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESI 511 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~i 511 (612)
..+.|+|. .|...++.+|.++|+.|| .+.++.+-. ..| -||.|+|.+.+++..++...+.-.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g--------~i~~~~~~~-~~g---~~~~vef~~~~~~~~~~~~~~~p~ 113 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFG--------PINNHFFYE-SFG---LYAVVEFCQKESIGSLQNGTHTPX 113 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGS--------CCCCEEEEC-SSS---EEEEEECC---CCHHHHSSCCCCC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcC--------CcceEEEEc-cCC---eEEEEEeCCHHHHHHHHhccCCCc
Confidence 45779998 699999999999999999 344566543 233 699999999999998886443333
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=80.91 E-value=1.3 Score=38.46 Aligned_cols=65 Identities=12% Similarity=0.088 Sum_probs=41.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC--CCC-ceeEEEEEeCCHHHHHHHHHh-CCccc
Q psy16116 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP--DGK-ATGDAFVLFEKEEEADKALSK-HKESI 511 (612)
Q Consensus 439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~--~Gr-skG~AFV~F~s~edA~kAL~~-~~~~i 511 (612)
..|-||.||.+.||+++.+.++.+- +.+.-.++..+ .+. .-..|||.|.+.|++..-.+. +|..+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~--------~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLP--------AHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCS--------SEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcC--------ccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 4599999999999999776665432 11222222111 111 235699999999999888764 66543
No 395
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=55.63 E-value=9 Score=33.28 Aligned_cols=29 Identities=14% Similarity=0.113 Sum_probs=25.2
Q ss_pred cccEEEEcCCCccCCHHHHHHhhccCCcEe
Q psy16116 577 RKDCIRLRGLPYEALCILMDIFFVGQQDSF 606 (612)
Q Consensus 577 ~~~~VfVrNLPf~vTeeDLkefFs~~gdI~ 606 (612)
..++++| ++|-+....||.++|+.||-|.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~ 43 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ 43 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCC
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEE
Confidence 5678888 9999999999999999997443
No 396
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=54.48 E-value=26 Score=30.64 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=40.4
Q ss_pred HHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116 351 LLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG 415 (612)
Q Consensus 351 ~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~ 415 (612)
.+|+.|+.+.. ......+ +|-.-..|.|.+.++|.+|-. +|+..++|+.++|+-+..
T Consensus 26 ~~e~Lf~~~~~---~~tF~~l-----kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 26 KFESLFRTYDK---DTTFQYF-----KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp HHHHHHHTTCS---SCEEEEE-----TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred HHHHHHHhhCc---Ccceeec-----CcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 44555555543 2233333 233456999999999999986 899999999999988763
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=53.19 E-value=7.6 Score=33.82 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=25.4
Q ss_pred cccEEEEcCCCccCCHHHHHHhhccCCcEeE
Q psy16116 577 RKDCIRLRGLPYEALCILMDIFFVGQQDSFV 607 (612)
Q Consensus 577 ~~~~VfVrNLPf~vTeeDLkefFs~~gdI~~ 607 (612)
..++++| ++|-+....||.++|+.||-|.+
T Consensus 5 R~HV~~l-~FP~ewKt~Di~~lFs~fggv~I 34 (101)
T 3ctr_A 5 SDHVLHV-TFPKEWKTSDLYQLFSAFGNIQI 34 (101)
T ss_dssp EEEEEEE-ECCTTCCHHHHHHHTTTSEEEEE
T ss_pred CCeEEEE-eCChhhhhHHHHHHHhccCCEEE
Confidence 3467888 99999999999999999985544
No 398
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=51.87 E-value=28 Score=38.20 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=41.7
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH
Q psy16116 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS 505 (612)
Q Consensus 437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~ 505 (612)
..++++|+ +|..+...||.+.|+.|| .| .|+.+.| --|||.|.+.+.|..+|.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg----~v-----~V~widd------t~a~V~~~~~~~a~~~l~ 491 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFG----NI-----QISWIDD------TSAFVSLSQPEQVQIAVN 491 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGC----CC-----EEEECSS------SEEEEECSCHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcC----CE-----EEEEEcC------CeEEEEECCHHHHHHHHH
Confidence 34667776 899999999999999998 22 3555432 249999999999999986
No 399
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=49.78 E-value=9.1 Score=32.55 Aligned_cols=27 Identities=11% Similarity=0.067 Sum_probs=23.6
Q ss_pred cEEEEcCCCccCCHHHHHHhhccCCcE
Q psy16116 579 DCIRLRGLPYEALCILMDIFFVGQQDS 605 (612)
Q Consensus 579 ~~VfVrNLPf~vTeeDLkefFs~~gdI 605 (612)
++|-||+||.+.|++++.+..+.+.++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~ 28 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEH 28 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccc
Confidence 479999999999999999999987543
No 400
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=39.63 E-value=48 Score=31.39 Aligned_cols=57 Identities=18% Similarity=0.102 Sum_probs=39.9
Q ss_pred EEEeCCCC-C--------CCHHHHHHHH--hcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCC-HHHHHHHHHhC
Q psy16116 441 IRMRGLPY-E--------CTAKQVIDFF--EAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEK-EEEADKALSKH 507 (612)
Q Consensus 441 VfV~nLP~-s--------~te~dLrefF--~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s-~edA~kAL~~~ 507 (612)
+.|-|+|. . .+..+|++.| +.|. ...|+.+.++.| .+|++.|.|.+ ......|++++
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~---------p~kv~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~fe 83 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFN---------PTRVRPLWNYLG-HSGTAIVEFNKDWNGLHNGLLFD 83 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCC---------CSEEEEEECSSB-EEEEEEEECCSSHHHHHHHHHHH
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCC---------CceeEecccCCC-CceeEEEEecCChHHHHHHHHHH
Confidence 55666665 1 3457899988 8776 235788888777 88999999985 44566666543
No 401
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=38.95 E-value=6.4 Score=49.51 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=14.2
Q ss_pred hcHHHHHHHhh----------hhhcCcccceE
Q psy16116 60 VLVEHILEFLG----------EFASNIVYQGV 81 (612)
Q Consensus 60 ~~~~~il~f~~----------~~~~~~~~~gv 81 (612)
=.|-+|++-|| |...-+..||+
T Consensus 1336 NdI~ei~~vlGIEAAR~~Ii~Ei~~v~~~~G~ 1367 (1752)
T 3h0g_A 1336 NSFVEILQILGIEATRSALLKELRNVIEFDGS 1367 (1752)
T ss_dssp SCHHHHHHHSCHHHHHHHHHHHHHTTSCSSSC
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCC
Confidence 36777777777 55555556664
No 402
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=32.96 E-value=21 Score=30.77 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=22.6
Q ss_pred cEEEEcCCCccCCHHHHHHhhccCCc
Q psy16116 579 DCIRLRGLPYEALCILMDIFFVGQQD 604 (612)
Q Consensus 579 ~~VfVrNLPf~vTeeDLkefFs~~gd 604 (612)
-+|-||.||.+.||+++.+.++++-+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~ 35 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPA 35 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSS
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCc
Confidence 46999999999999999988887644
No 403
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=31.32 E-value=29 Score=37.87 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=30.2
Q ss_pred cCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCC
Q psy16116 345 QNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHK 400 (612)
Q Consensus 345 ~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng 400 (612)
...++.++.++|..||. |.++.+-.+ .| -||.|||++.+++++++....
T Consensus 62 ~~~~~~~l~~y~~~~g~---i~~~~~~~~-~g---~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 62 EKISENKFLKYLSQFGP---INNHFFYES-FG---LYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp CC---CHHHHHHGGGSC---CCCEEEECS-SS---EEEEEECC---CCHHHHSSCC
T ss_pred CCCCHHHHHHHHHhcCC---cceEEEEcc-CC---eEEEEEeCCHHHHHHHHhccC
Confidence 34556777777777764 777777332 22 599999999999998886543
No 404
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=29.65 E-value=11 Score=47.36 Aligned_cols=11 Identities=18% Similarity=0.129 Sum_probs=6.7
Q ss_pred eEEEEEccCCC
Q psy16116 80 GVHMVYNSQGQ 90 (612)
Q Consensus 80 gvhmv~n~qg~ 90 (612)
|.-|..|+.|.
T Consensus 1379 G~~~~itR~Gi 1389 (1733)
T 1twf_A 1379 GGLTSVTRHGF 1389 (1733)
T ss_dssp SSCCCSSSCSS
T ss_pred ceecccchhhh
Confidence 55566666665
No 405
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=26.34 E-value=14 Score=46.54 Aligned_cols=6 Identities=50% Similarity=0.861 Sum_probs=0.0
Q ss_pred CCCCCC
Q psy16116 160 SPGMLP 165 (612)
Q Consensus 160 ~~~m~p 165 (612)
+|++.|
T Consensus 1574 sp~~sp 1579 (1733)
T 1twf_A 1574 SPSYSP 1579 (1733)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 344433
No 406
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.06 E-value=1.1e+02 Score=25.67 Aligned_cols=51 Identities=24% Similarity=0.234 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHH
Q psy16116 446 LPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL 504 (612)
Q Consensus 446 LP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL 504 (612)
....++..+|++.++.+. .| .+..|+.+.-++|.. -|||++....+|....
T Consensus 30 Vd~~AnK~qIK~AVe~lf----~V--kV~~VNTl~~~~~~K--KA~V~L~~~~~a~dva 80 (86)
T 3j21_T 30 VDRRATKQDIKRAVEEIF----NV--KVEKVNTLITPRGEK--KAYVKLKPEYSASEVA 80 (86)
T ss_dssp ECTTCCHHHHHHHHHHHT----TC--CEEEEEEEECTTSCE--EEEEEECTTSCHHHHH
T ss_pred EcCCCCHHHHHHHHHHHc----CC--CceEEEEeEcCCCce--EEEEEcCCCCcHHHHH
Confidence 456899999999998854 23 567787776655543 3999998777665543
Done!