RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16116
(612 letters)
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 59.8 bits (144), Expect = 9e-12
Identities = 36/89 (40%), Positives = 55/89 (61%), Gaps = 7/89 (7%)
Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
+R+RGLP+ C+ ++++ FF + G+ G++TG+AFV F +E
Sbjct: 17 FVRLRGLPFGCSKEEIVQFF-------SGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEI 69
Query: 500 ADKALSKHKESIGIRYIELFRSTTAEVQQ 528
A+KAL KHKE IG RYIE+F+S+ AEV+
Sbjct: 70 AEKALKKHKERIGHRYIEIFKSSRAEVRT 98
Score = 38.7 bits (89), Expect = 2e-04
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 376 GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNN 426
GR GEA V+F QE + ALK+HK I RYIE+ K++ + + +G ++
Sbjct: 54 GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE-VRTSGPSS 103
Score = 36.0 bits (82), Expect = 0.002
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 63 EHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKK 122
E I++F IV G+ + + QG+ +GEAF+Q S+ A A L+ ++ I
Sbjct: 30 EEIVQFFSGL--EIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKA--LKKHKERIGH-- 83
Query: 123 QRYIEVFQCSGEDM 136
RYIE+F+ S ++
Sbjct: 84 -RYIEIFKSSRAEV 96
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 59.4 bits (143), Expect = 1e-11
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 424 GNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPD 483
G++ + + + MRGLPY T + +FF V PD
Sbjct: 1 GSSGSSGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPL---------NPMRVHIEIGPD 51
Query: 484 GKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQ 528
G+ TG+A V F E+A A++K K ++ RY+ELF ++TA
Sbjct: 52 GRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSG 96
Score = 38.2 bits (88), Expect = 3e-04
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 375 FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKAN 414
GR GEA V F E A+ + K ++ RY+E+ +
Sbjct: 51 DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 57.6 bits (138), Expect = 6e-11
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
+ ++GLP+E K VIDFF+ ++ P+GKATG+ FV F E +
Sbjct: 20 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIY-------IAYGPNGKATGEGFVEFRNEAD 72
Query: 500 ADKALSKHKESIGIRYIELFRSTTAEVQQVLNKT 533
AL +HK+ +G R+I++ T + + ++
Sbjct: 73 YKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMI 106
Score = 40.3 bits (93), Expect = 8e-05
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 377 RRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFI 419
+ GE V F ++ AL RHK ++ R+I+V + +
Sbjct: 58 KATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGML 100
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 52.5 bits (125), Expect = 3e-09
Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEK 496
A+V + +P+ T V+ F + E V + +G+ G A V F+
Sbjct: 7 AKVCAHITNIPFSITKMDVLQFL-------EGIPVDENAVHVLVDNNGQGLGQALVQFKN 59
Query: 497 EEEADKALSKHKESIGIRYIELFRSTTAEVQQV 529
E++A K+ H++ + R + T +++++
Sbjct: 60 EDDARKSERLHRKKLNGREAFVHVVTLEDMREI 92
Score = 34.1 bits (77), Expect = 0.008
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 376 GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGED 417
G+ G+A+V+F +++ + + H+ ++ R V ED
Sbjct: 47 GQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLED 88
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 47.7 bits (113), Expect = 8e-08
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
GL ++ T + + ++F E ++ ++ G FV F + DK
Sbjct: 6 GGLSWQTTQEGLREYFGQFGEVKECLV-------MRDPLTKRSRGFGFVTFMDQAGVDKV 58
Query: 504 LSKHKESIGIRYIE 517
L++ + + + I+
Sbjct: 59 LAQSRHELDSKTID 72
Score = 36.9 bits (85), Expect = 4e-04
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 376 GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA 413
R G V F+DQ D L + +H +D + I+ A
Sbjct: 39 KRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 47.7 bits (113), Expect = 9e-08
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
II+++ +P+ + +++DFF V G TG+A V FE +E
Sbjct: 11 IIKVQNMPFTVSIDEILDFF-------YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 63
Query: 500 ADKALSK-HKESIGIRYIEL 518
A A+ + IG R ++L
Sbjct: 64 ATAAVIDLNDRPIGSRKVKL 83
Score = 32.0 bits (72), Expect = 0.033
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 79 QGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKKQRYIEV 128
V + YN +G P+GEA + +S A A ++R + R +++
Sbjct: 38 GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI----GSRKVKL 83
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 46.5 bits (109), Expect = 2e-06
Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 17/153 (11%)
Query: 376 GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTR 435
R G V + E D A+ H +D R +E +A + G + +
Sbjct: 45 KRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK----- 99
Query: 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFE 495
I + G+ + + D+FE + + + GK G AFV F+
Sbjct: 100 -----IFVGGIKEDTEEHHLRDYFEQYGKIEVIEI-------MTDRGSGKKRGFAFVTFD 147
Query: 496 KEEEADKALSKHKESIGIRYIELFRSTTAEVQQ 528
+ DK + + ++ E+ ++ + +
Sbjct: 148 DHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 180
Score = 31.1 bits (69), Expect = 0.27
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 443 MRGLPYECTAKQVIDFFE-AGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEAD 501
+ GL +E T + + FE GT C VM ++ G FV + EE D
Sbjct: 11 IGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNT--------KRSRGFGFVTYATVEEVD 62
Query: 502 KALSKHKESIGIRYIELFRST 522
A++ + R +E R+
Sbjct: 63 AAMNARPHKVDGRVVEPKRAV 83
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 43.0 bits (101), Expect = 3e-06
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
GL + +++ ++F E + + K G F+ F++EE K
Sbjct: 5 GGLSPDTPEEKIREYFGGFGEVESIEL-------PMDNKTNKRRGFCFITFKEEEPVKKI 57
Query: 504 LSKHKESIGIRYIE 517
+ K ++G+ E
Sbjct: 58 MEKKYHNVGLSKCE 71
Score = 33.8 bits (77), Expect = 0.006
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 382 AIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA 413
+ F ++E +++ H++ E+ A
Sbjct: 44 CFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 43.0 bits (101), Expect = 5e-06
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 441 IRMRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
I +R +P++ +++ + F G + + G G FV F +++
Sbjct: 11 ILVRNIPFQANQREIRELFSTFGELKTVRLP-------KKMTGTGAHRGFGFVDFITKQD 63
Query: 500 ADKALSK--HKESIGIRYIELFRSTTAEVQQ 528
A KA + H + R + L + + Q
Sbjct: 64 AKKAFNALCHSTHLYGRRLVLEWADSEVTVQ 94
Score = 31.4 bits (71), Expect = 0.053
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 376 GRRNGEAIVRFIDQEHRDMALKR--HKHHIDKRYIEVTKANGED 417
G G V FI ++ A H H+ R + + A+ E
Sbjct: 48 GAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV 91
Score = 30.7 bits (69), Expect = 0.11
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 63 EHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKK 122
I E F + G G F+ ++ A A + ++G++
Sbjct: 23 REIRELFSTFGEL-KTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 81
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 41.1 bits (96), Expect = 2e-05
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
GLP++ T + + ++F + + G + G FV F + E K
Sbjct: 14 LGLPWKTTEQDLKEYF-------STFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 66
Query: 504 LSKHKESIGIRYIE 517
+ + I R+ +
Sbjct: 67 M-SQRHMIDGRWCD 79
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 40.4 bits (94), Expect = 2e-05
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
GL ++ T K + D+F + + L + G++ G FVLF++ E DK
Sbjct: 5 GGLSWDTTKKDLKDYFS-------KFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 57
Query: 504 LSKHKESIGIRYIE 517
+ + + + + I+
Sbjct: 58 MDQKEHKLNGKVID 71
Score = 32.6 bits (74), Expect = 0.015
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 382 AIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA 413
V F + E D + + +H ++ + I+ +A
Sbjct: 44 GFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 75
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 40.8 bits (95), Expect = 3e-05
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
GL +E T + + +++E + + V+ ++ G FV F E D A
Sbjct: 26 GGLSFETTEESLRNYYEQWGKLTDCVV-------MRDPASKRSRGFGFVTFSSMAEVDAA 78
Query: 504 LSKHKESIGIRYIELFRST 522
++ SI R +E R+
Sbjct: 79 MAARPHSIDGRVVEPKRAV 97
Score = 33.1 bits (75), Expect = 0.020
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 376 GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA 413
R G V F D A+ H ID R +E +A
Sbjct: 59 KRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 96
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 39.2 bits (91), Expect = 8e-05
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
GL +E T + + FE + V+ ++ G FV + EE D A
Sbjct: 12 GGLSFETTDESLRSHFEQWGTLTDCVV-------MRDPNTKRSRGFGFVTYATVEEVDAA 64
Query: 504 LSKHKESIGIRYIE 517
++ + R +E
Sbjct: 65 MNARPHKVDGRVVE 78
Score = 33.5 bits (76), Expect = 0.011
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 382 AIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA 413
V + E D A+ H +D R +E +A
Sbjct: 51 GFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 82
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 37.7 bits (87), Expect = 4e-04
Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 7/82 (8%)
Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
+ L + + DFF V + + + ++ G A+V F + +
Sbjct: 21 VFCMQLAARIRPRDLEDFFS-------AVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 73
Query: 501 DKALSKHKESIGIRYIELFRST 522
A+ + + I + S
Sbjct: 74 PLAIGLTGQRLLGVPIIVQASQ 95
Score = 28.1 bits (62), Expect = 1.0
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 377 RRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE 416
R G A V F + + +A+ + I V + E
Sbjct: 58 RSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAE 97
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 35.9 bits (82), Expect = 0.001
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
GL T + V +F ++ +L K + G FV FE E+ +K
Sbjct: 5 GGLSVNTTVEDVKHYF-------EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV 57
Query: 504 LSKHKESIGIRYIE 517
H I + +E
Sbjct: 58 CEIHFHEINNKMVE 71
Score = 30.9 bits (69), Expect = 0.062
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 383 IVRFIDQEHRDMALKRHKHHIDKRYIEVTKA 413
V F ++ + + H H I+ + +E KA
Sbjct: 45 FVTFESEDIVEKVCEIHFHEINNKMVECKKA 75
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 35.7 bits (82), Expect = 0.001
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 441 IRMRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
+ + L + T + + F G S V ++ G A+V F++ +
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI--------TRRSLGYAYVNFQQPAD 54
Query: 500 ADKALSK 506
A++AL
Sbjct: 55 AERALDT 61
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 34.9 bits (80), Expect = 0.002
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 441 IRMRGLPYECTAKQVIDFFE-AGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
+ + L + + + + F GT V G++ G A V FE++ +
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVH---------YDRSGRSLGTADVHFERKAD 53
Query: 500 ADKALSK-HKESIGIRYIELFRSTT 523
A KA+ + + + R + + T+
Sbjct: 54 ALKAMKQYNGVPLDGRPMNIQLVTS 78
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 34.3 bits (78), Expect = 0.006
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
+ ++G P + T + ++ E + M + G FV+F+ E A
Sbjct: 9 VYIKGFPTDATLDDIKEWLEDKGQVLNIQMR--------RTLHKAFKGSIFVVFDSIESA 60
Query: 501 DKALSKHKESIGIRYIE 517
K + + +
Sbjct: 61 KKFVETPGQKYKETDLL 77
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 34.0 bits (77), Expect = 0.006
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 443 MRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
+ L E K + D F A + G + G AF+ F + +D
Sbjct: 3 IGNLDPEIDEKLLYDTFSAFGVILQTPK------IMRDPDTGNSKGYAFINFASFDASDA 56
Query: 503 ALSKH 507
A+
Sbjct: 57 AIEAM 61
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 34.2 bits (78), Expect = 0.007
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
+ + L + T +Q+ + F + +M + K A G FV + +A
Sbjct: 10 LYVGNLSFYTTEEQIYELFSKSGDIKKIIM-------GLDKMKKTACGFCFVEYYSRADA 62
Query: 501 DKALSK 506
+ A+
Sbjct: 63 ENAMRY 68
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 33.9 bits (77), Expect = 0.010
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 7/74 (9%)
Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
GLPY T + +FE + V+ + GK+ G FV A++A
Sbjct: 16 GGLPYHTTDASLRKYFEGFGDIEEAVV-------ITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 504 LSKHKESIGIRYIE 517
I R
Sbjct: 69 CKDPNPIIDGRKAN 82
Score = 27.0 bits (59), Expect = 2.5
Identities = 10/40 (25%), Positives = 13/40 (32%)
Query: 377 RRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE 416
+ G V D+ + A K ID R V A
Sbjct: 50 KSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLG 89
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 33.5 bits (76), Expect = 0.010
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 444 RGLPYECTAKQVIDFFE-AGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
+ L + T + + F G SC + + K + G FV ++K E+A K
Sbjct: 4 KNLNFSTTEETLKGVFSKVGAIKSCTISKKKN-----KAGVLLSMGFGFVEYKKPEQAQK 58
Query: 503 ALSK-HKESIGIRYIELFRS 521
AL + ++ +E+ S
Sbjct: 59 ALKQLQGHTVDGHKLEVRIS 78
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 33.1 bits (75), Expect = 0.013
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Query: 443 MRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
+ GLP QV + + + G + G AF + D+
Sbjct: 6 IGGLPNYLNDDQVKELLTSFGPLKAFNL-------VKDSATGLSKGYAFCEYVDINVTDQ 58
Query: 503 ALSK-HKESIGIRYIELFRST 522
A++ + +G + + + R++
Sbjct: 59 AIAGLNGMQLGDKKLLVQRAS 79
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 32.6 bits (74), Expect = 0.019
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
LP T Q+ F + K G+ G AFV + K EEA +A
Sbjct: 12 TNLPRTITDDQLDTIFGKYGSIVQKNI-------LRDKLTGRPRGVAFVRYNKREEAQEA 64
Query: 504 LSK 506
+S
Sbjct: 65 ISA 67
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 32.6 bits (74), Expect = 0.027
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 476 VLFVKKPDGKATGDAFVLFEKEEEADKA 503
+ + D G A V F EEAD
Sbjct: 46 IRKLLLFDRHPDGVASVSFRDPEEADYC 73
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 32.7 bits (74), Expect = 0.029
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
LP E + ++ F + +F+ K + FV ++ A A
Sbjct: 24 YHLPQEFGDQDLLQMF-------MPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 76
Query: 504 LSK 506
+
Sbjct: 77 IQS 79
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 31.9 bits (72), Expect = 0.039
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 435 RGAQVIIRMRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVL 493
R A + + GLP T K++ F G + ++ + G + G F+
Sbjct: 5 RDANLYVS--GLPKTMTQKELEQLFSQYGRIITSRILV--------DQVTGVSRGVGFIR 54
Query: 494 FEKEEEADKALSK 506
F+K EA++A+
Sbjct: 55 FDKRIEAEEAIKG 67
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 31.2 bits (70), Expect = 0.046
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 384 VRFIDQEHRDMALKRHKHHIDKRYIEVTKA 413
V F D + D + + H ++ EV KA
Sbjct: 49 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 78
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 32.0 bits (72), Expect = 0.048
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
+ LPY+ T + + +FF ++ + + G + FE +
Sbjct: 18 AFLGNLPYDVTEESIKEFFRGLNISAVRLP-------REPSNPERLKGFGYAEFEDLDSL 70
Query: 501 DKALSKHKESIGIRYIELFRST 522
ALS ++ES+G + I + +
Sbjct: 71 LSALSLNEESLGNKRIRVDVAD 92
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 31.6 bits (71), Expect = 0.063
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
+ + L + T ++ + FE E DG+ G A++ F+ E +A
Sbjct: 19 LLAKNLSFNITEDELKEVFEDALEIRLVSQDGKS------------KGIAYIEFKSEADA 66
Query: 501 DKALSK-HKESIGIRYIELFRST 522
+K L + I R + L+ +
Sbjct: 67 EKNLEEKQGAEIDGRSVSLYYTG 89
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 31.9 bits (72), Expect = 0.067
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 440 IIRMRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEE 498
I+ +R LPY+ TA+++ D F G V + G A+V++E
Sbjct: 9 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG-----------NTPETRGTAYVVYEDIF 57
Query: 499 EADKALSK 506
+A A
Sbjct: 58 DAKNACDH 65
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 30.8 bits (69), Expect = 0.081
Identities = 8/67 (11%), Positives = 16/67 (23%), Gaps = 14/67 (20%)
Query: 444 RGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
+ T ++ +FF G + FV F ++ A
Sbjct: 11 GRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVT-------------FADDQIAQS 57
Query: 503 ALSKHKE 509
+
Sbjct: 58 LCGEDLI 64
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 30.8 bits (69), Expect = 0.098
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 444 RGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
+ L K + D F A G SC V+ + + G FV FE +E A++
Sbjct: 14 KNLDKSIDNKALYDTFSAFGNILSCKVV----------CDENGSKGYGFVHFETQEAAER 63
Query: 503 ALSK 506
A+ K
Sbjct: 64 AIEK 67
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 30.8 bits (69), Expect = 0.11
Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
R L Y + + + F A S + K G AFV F E A KA
Sbjct: 14 RNLSYTSSEEDLEKLFSAYGPLSELHY-------PIDSLTKKPKGFAFVTFMFPEHAVKA 66
Query: 504 LSK-HKESIGIRYIELFRSTT 523
++ + R + + ST
Sbjct: 67 YAEVDGQVFQGRMLHVLPSTI 87
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 30.4 bits (68), Expect = 0.13
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
IR+ L + + + F S + K G++ G AF+ F + E+A
Sbjct: 11 IRVTNLSEDTRETDLQELFRPFGSISRIYL-------AKDKTTGQSKGFAFISFHRREDA 63
Query: 501 DKALSK 506
+A++
Sbjct: 64 ARAIAG 69
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 30.1 bits (67), Expect = 0.18
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
I +R L E + ++ G + + +K AF++FE ++ A
Sbjct: 7 IMIRNLSTELLDENLLRESFEGFGSIEKINIP-----AGQKEHSFNNCCAFMVFENKDSA 61
Query: 501 DKALSKHKESIGIRYIELFRST 522
++AL ++ +G R I + +
Sbjct: 62 ERALQMNRSLLGNREISVSLAD 83
Score = 27.0 bits (59), Expect = 1.7
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 384 VRFIDQEHRDMALKRHKHHIDKRYIEVTKAN 414
+ F +++ + AL+ ++ + R I V+ A+
Sbjct: 53 MVFENKDSAERALQMNRSLLGNREISVSLAD 83
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 29.6 bits (66), Expect = 0.21
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 444 RGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
LP + T +++ F A G N+C +M + G + G AFV F E ++ +
Sbjct: 8 NYLPQDMTDRELYALFRAIGPINTCRIMRDYK--------TGYSYGYAFVDFTSEMDSQR 59
Query: 503 ALSK 506
A+
Sbjct: 60 AIKV 63
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 30.4 bits (68), Expect = 0.22
Identities = 13/102 (12%), Positives = 24/102 (23%), Gaps = 18/102 (17%)
Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
I + L Y T + VL + A + + A
Sbjct: 10 IIVENLFYPVTLDVLHQI-----------FSKFGTVLKIITFTKNNQFQALLQYADPVSA 58
Query: 501 DKALSK-HKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNS 541
A ++I L + ++ + NN
Sbjct: 59 QHAKLSLDGQNIYNACCTL------RIDFSKLTSLNVKYNND 94
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 29.3 bits (65), Expect = 0.25
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
LP T ++ F + E + K G++ G FV + ++A+KA
Sbjct: 8 NYLPQNMTQEEFRSLFGSIGEIESCKL-------VRDKITGQSLGYGFVNYIDPKDAEKA 60
Query: 504 LSK 506
++
Sbjct: 61 INT 63
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 29.6 bits (66), Expect = 0.25
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 9/67 (13%)
Query: 441 IRMRGLPYECTAKQVIDFFE-AGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
+ + GL + + + + F AG + ++ FV F EE+
Sbjct: 12 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYG--------FVEFLSEED 63
Query: 500 ADKALSK 506
AD A+
Sbjct: 64 ADYAIKI 70
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 29.3 bits (65), Expect = 0.32
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 8/85 (9%)
Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
I+ + + E ++ + F E + + + G + G A V +E ++
Sbjct: 9 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHL-------NLDRRTGFSKGYALVEYETHKQ 61
Query: 500 ADKALSK-HKESIGIRYIELFRSTT 523
A A + I + I++
Sbjct: 62 ALAAKEALNGAEIMGQTIQVDWCFV 86
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 29.3 bits (65), Expect = 0.38
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 443 MRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
+ G+P +++++ TE +V+ K G AFV +E A
Sbjct: 6 IGGIPKMKKREEILEEIAKVTEGVLDVIV-----YASAADKMKNRGFAFVEYESHRAAAM 60
Query: 503 ALSK 506
A K
Sbjct: 61 ARRK 64
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 28.4 bits (63), Expect = 0.57
Identities = 5/45 (11%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 377 RRNGEAIVRFIDQEHRDMALKRHKHHIDKRY-IEVTKANGEDFIN 420
+R+ + AL + + I V ++ +
Sbjct: 37 NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDKNVME 81
Score = 27.6 bits (61), Expect = 1.0
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 14/72 (19%)
Query: 445 GLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL 504
G P ++ F + +K + ++ + +A KAL
Sbjct: 11 GFPQASA-SYILLQFA-------------QYGNILKHVMSNTGNWMHIRYQSKLQARKAL 56
Query: 505 SKHKESIGIRYI 516
SK G +
Sbjct: 57 SKDGRIFGESIM 68
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 28.3 bits (62), Expect = 0.59
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 382 AIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA 413
A + F + A+ + + + I V+
Sbjct: 43 ARIEFARYDGALAAITKTHKVVGQNEIIVSHL 74
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 28.5 bits (63), Expect = 0.60
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 441 IRMRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
+ + GL T + + + F G +++ ++ FV FE ++
Sbjct: 12 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFA--------FVYFENVDD 63
Query: 500 ADKALSK-HKESIGIRYIE 517
A +A + + + R I
Sbjct: 64 AKEAKERANGMELDGRRIR 82
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 28.6 bits (63), Expect = 0.73
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
+ +R L ++ + + + D + + + + G AF F +E A
Sbjct: 11 VFIRNLSFDSEEEALGEVL-------QQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAA 63
Query: 501 DKALSKHKESIGIRYIEL 518
K L+ ++L
Sbjct: 64 QKCLAAASLEAEGGGLKL 81
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 28.5 bits (63), Expect = 0.83
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 13/68 (19%)
Query: 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEE 498
+++ GL + Q++ E +M + +F + E
Sbjct: 21 LVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPY-------------SFARYRTTE 67
Query: 499 EADKALSK 506
E+ +A
Sbjct: 68 ESKRAYVT 75
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 27.6 bits (61), Expect = 1.1
Identities = 10/80 (12%), Positives = 26/80 (32%), Gaps = 14/80 (17%)
Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
LP + T +++ FE + + ++G F+ E A+ A
Sbjct: 14 GNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGF-------------GFIRLETRTLAEIA 60
Query: 504 LSK-HKESIGIRYIELFRST 522
+ + + + + +
Sbjct: 61 KVELDNMPLRGKQLRVRFAC 80
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 27.8 bits (61), Expect = 1.2
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
+PYE T +Q+ D F + + GK G F ++ +E A A
Sbjct: 14 GNIPYEATEEQLKDIFSEVGPVVSFRL-------VYDRETGKPKGYGFCEYQDQETALSA 66
Query: 504 LSK-HKESIGIRYIELFRSTTAEVQQVLNK 532
+ + R + + + + + ++ L
Sbjct: 67 MRNLNGREFSGRALRVDNAASEKNKEELKS 96
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 27.3 bits (60), Expect = 1.5
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
+P+ + F ++D + + + G FV FE +AD+A
Sbjct: 17 SNIPFRFRDPDLRQMF----GQFGKILDV-----EIIFNERGSKGFGFVTFENSADADRA 67
Query: 504 LSK-HKESIGIRYIELFRST 522
K H + R IE+ +T
Sbjct: 68 REKLHGTVVEGRKIEVNNAT 87
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 27.8 bits (61), Expect = 1.5
Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 24/108 (22%)
Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
++ +RGL +++ E A V FE +
Sbjct: 17 VVHVRGLCESVVEADLVEALEKFGT-------------ICYVMMMPFKRQALVEFENIDS 63
Query: 500 ADKA---LSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTS 544
A + + I + ST +K + P N+ +S
Sbjct: 64 AKECVTFAADVPVYIAGQQAFFNYST--------SKRITRPGNSGPSS 103
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 26.9 bits (59), Expect = 2.2
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 7/81 (8%)
Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
L + ++ A ++D + K G AFV+F++ A A
Sbjct: 9 NNLNEKIKKDELKKSLHAIFSRFGQILD------ILVSRSLKMRGQAFVIFKEVSSATNA 62
Query: 504 LSK-HKESIGIRYIELFRSTT 523
L + + + + T
Sbjct: 63 LRSMQGFPFYDKPMRIQYAKT 83
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 26.7 bits (58), Expect = 2.3
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
RGL T + ++ + K K G FV F+ A KA
Sbjct: 4 RGLQPGTTDQDLVKLC-------QPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKA 56
Query: 504 LSK 506
++
Sbjct: 57 VTA 59
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 26.5 bits (58), Expect = 3.3
Identities = 12/67 (17%), Positives = 18/67 (26%), Gaps = 15/67 (22%)
Query: 441 IRMRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
+ G+ T + + F G V G +FV F E
Sbjct: 21 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--------------PEKGYSFVRFSTHES 66
Query: 500 ADKALSK 506
A A+
Sbjct: 67 AAHAIVS 73
>d1epwa2 b.42.4.2 (A:1080-1290) Botulinum neurotoxin {Clostridium
botulinum, serotype B [TaxId: 1491]}
Length = 211
Score = 27.2 bits (60), Expect = 4.6
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 406 RYIEVTKANGEDFINVAGGNNNEAQAFLTR----GAQVIIR 442
YI++ K + I N ++ R G + IIR
Sbjct: 28 SYIKLKKDSPVGEILTRSKYNQNSKYINYRDLYIGEKFIIR 68
>d2nzca1 d.58.18.14 (A:2-81) Hypothetical protein TM1266 {Thermotoga
maritima [TaxId: 2336]}
Length = 80
Score = 25.7 bits (57), Expect = 4.6
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 428 EAQAFLTRGAQVII-RMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVL 477
+ L ++ I+ R+ G P +I ++ + G+ G +
Sbjct: 20 QVNELLHNFSEDILLRV-GYPVREENMAIIFLVLKTDNDTIGALSGKLGQI 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.402
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,193,120
Number of extensions: 102729
Number of successful extensions: 399
Number of sequences better than 10.0: 1
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 77
Length of query: 612
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 521
Effective length of database: 1,158,166
Effective search space: 603404486
Effective search space used: 603404486
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)