BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16117
(668 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 119 bits (299), Expect = 4e-27, Method: Composition-based stats.
Identities = 59/166 (35%), Positives = 99/166 (59%), Gaps = 4/166 (2%)
Query: 301 KPLPEDLRTWIEGA-EKGVIYFSLGSNMRSASLEESKRSAILTTFAKFPQYRVIWKWEEE 359
KPLP++ +++ + E GV+ FSLGS + + + E + + I + A+ PQ +V+W+++
Sbjct: 5 KPLPKEXEDFVQSSGENGVVVFSLGSXVSNXT--EERANVIASALAQIPQ-KVLWRFDGN 61
Query: 360 QLPGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYN 419
+ L N KW+PQ+DLL HPK + FIT GG + E++Y +P +GIP F DQ N
Sbjct: 62 KPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
Query: 420 VKIIKNLGIGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISAL 465
+ K G +DF++ S+ L N +K V+ + SY + V ++S +
Sbjct: 122 IAHXKARGAAVRVDFNTXSSTDLLNALKRVINDPSYKENVXKLSRI 167
Score = 86.7 bits (213), Expect = 4e-17, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 549 ESKRSAILTTLDKFPQYRVIWKWEEEQLPGLPSNVICRKWLPQQDLLAHPNVKLFIMQGG 608
E + + I + L + PQ +V+W+++ + L N KW+PQ DLL HP + FI GG
Sbjct: 37 EERANVIASALAQIPQ-KVLWRFDGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGG 95
Query: 609 LQSLQEAVYFEVPMIGIPFFGDQDYNVKIIKNLGVGSYIDYDSINNENFYNLMKEIL 665
+ EA+Y +P +GIP F DQ N+ K G +D+++ ++ + N +K ++
Sbjct: 96 ANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGAAVRVDFNTXSSTDLLNALKRVI 152
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 49/84 (58%)
Query: 6 HPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEV 65
HPK + FIT GG + E++Y +P +GIP F DQ N+ K G +DF++ S+
Sbjct: 84 HPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGAAVRVDFNTXSSTD 143
Query: 66 LYNLMKEVLYNTSYMDTVKRISAL 89
L N +K V+ + SY + V ++S +
Sbjct: 144 LLNALKRVINDPSYKENVXKLSRI 167
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 17/192 (8%)
Query: 290 INVGPTHIGDPKPLPEDLR---TWI-EGAEKGVIYFSLGSNMRSASLEESKRSAILTTFA 345
+N+GP ++ P P+ + W+ E V+Y S G+ E S L +
Sbjct: 241 LNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEA-S 299
Query: 346 KFPQYRVIWKWEEEQLPGLPSNVICRK--------WLPQHDLLAHPKIKLFITQGGLQSL 397
+ P IW ++ LP + + W PQ ++LAH + F+T G SL
Sbjct: 300 RVP---FIWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSL 356
Query: 398 QESVYFEVPLIGIPFFGDQDYNVKIIKN-LGIGTYMDFDSVSTEVLYNLMKEVLYNTSYM 456
ESV VPLI PFFGDQ N +++++ L IG ++ + L + ++L
Sbjct: 357 WESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEKGK 416
Query: 457 DTVKRISALSKT 468
+ + AL +T
Sbjct: 417 KLRENLRALRET 428
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 21/152 (13%)
Query: 523 TKQSYLEMGGRTITRTAKQCYLQEVVESKRSAILTTLDKFPQYRVIWKWEEEQLPGLPSN 582
T Y+ G T A+ L E +E+ R IW ++ LP
Sbjct: 271 TSVVYISFGTVTTPPPAEVVALSEALEASRVPF------------IWSLRDKARVHLPEG 318
Query: 583 VICRK--------WLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFFGDQDYN 634
+ + W PQ ++LAH V F+ G SL E+V VP+I PFFGDQ N
Sbjct: 319 FLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLN 378
Query: 635 VKIIKN-LGVGSYIDYDSINNENFYNLMKEIL 665
+++++ L +G I+ + +IL
Sbjct: 379 GRMVEDVLEIGVRIEGGVFTKSGLMSCFDQIL 410
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 6 HPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKN-LGIGTYMDFDSVSTE 64
H + F+T G SL ESV VPLI PFFGDQ N +++++ L IG ++ +
Sbjct: 341 HEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKS 400
Query: 65 VLYNLMKEVLYNTSYMDTVKRISALSKT 92
L + ++L + + AL +T
Sbjct: 401 GLMSCFDQILSQEKGKKLRENLRALRET 428
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 364 LPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKII 423
+P NV +W+PQ D+L K FIT G+ S E++ VP++ +P +Q N + I
Sbjct: 303 VPPNVEVHQWVPQLDILT--KASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERI 360
Query: 424 KNLGIGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISALSK 467
LG+G ++ D V+ E L + VL S +R++A+ +
Sbjct: 361 VELGLGRHIPRDQVTAE---KLREAVLAVASDPGVAERLAAVRQ 401
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 579 LPSNVICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFFGDQDYNVKII 638
+P NV +W+PQ D+L FI G+ S EA+ VPM+ +P +Q N + I
Sbjct: 303 VPPNVEVHQWVPQLDILT--KASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERI 360
Query: 639 KNLGVGSYIDYDSINNENFYNLMKEILYN 667
LG+G +I D + E + + +
Sbjct: 361 VELGLGRHIPRDQVTAEKLREAVLAVASD 389
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 8 KIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEVLY 67
K FIT G+ S E++ VP++ +P +Q N + I LG+G ++ D V+ E
Sbjct: 321 KASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAE--- 377
Query: 68 NLMKEVLYNTSYMDTVKRISALSK 91
L + VL S +R++A+ +
Sbjct: 378 KLREAVLAVASDPGVAERLAAVRQ 401
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 17/171 (9%)
Query: 290 INVGPTHIGDPKPLPED---LRTWIEGAE-KGVIYFSLGSNMRSASLEESKRSAILTTFA 345
+NVGP ++ P+ D W++ E V+Y S GS + E + + L
Sbjct: 243 LNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEE-C 301
Query: 346 KFPQYRVIWKWEEEQLPGLPSNVICR--------KWLPQHDLLAHPKIKLFITQGGLQSL 397
FP IW + + LP + R W PQ ++L H + +F+T G S+
Sbjct: 302 GFP---FIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSV 358
Query: 398 QESVYFEVPLIGIPFFGDQDYNVKIIKN-LGIGTYMDFDSVSTEVLYNLMK 447
E + VP+I PFFGDQ N + ++ L IG +D ++ E + ++
Sbjct: 359 LECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALE 409
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 565 YRVIWKWEEEQLPGLPSNVICR--------KWLPQQDLLAHPNVKLFIMQGGLQSLQEAV 616
+ IW + + LP + R W PQ ++L H +V +F+ G S+ E +
Sbjct: 303 FPFIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECI 362
Query: 617 YFEVPMIGIPFFGDQDYNVKIIKN-LGVGSYIDYDSINNENFYNLMK 662
VPMI PFFGDQ N + ++ L +G +D + E+ ++
Sbjct: 363 VGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALE 409
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 6 HPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKN-LGIGTYMDFDSVSTE 64
H + +F+T G S+ E + VP+I PFFGDQ N + ++ L IG +D ++ E
Sbjct: 343 HSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKE 402
Query: 65 VLYNLMK 71
+ ++
Sbjct: 403 SIKKALE 409
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 14/158 (8%)
Query: 313 GAEKGVIYFSLGS--NMRSASLEESKRSAILTTFAKFPQYRVIWKWEEEQLPG----LPS 366
GAEK V+ SLGS + A E R+ F P + ++ + + P LP
Sbjct: 230 GAEK-VVLVSLGSAFTKQPAFYRECVRA-----FGNLPGWHLVLQIGRKVTPAELGELPD 283
Query: 367 NVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNL 426
NV W+PQ +L + LF+T G QE + P+I +P DQ N +++ L
Sbjct: 284 NVEVHDWVPQLAILR--QADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGL 341
Query: 427 GIGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISA 464
G+ + + + ++L ++ + ++RI A
Sbjct: 342 GVARKLATEEATADLLRETALALVDDPEVARRLRRIQA 379
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 575 QLPGLPSNVICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFFGDQDYN 634
+L LP NV W+PQ +L + LF+ G QE + PMI +P DQ N
Sbjct: 277 ELGELPDNVEVHDWVPQLAILRQAD--LFVTHAGAGGSQEGLATATPMIAVPQAVDQFGN 334
Query: 635 VKIIKNLGVGSYIDYDSINNENFYNLMKE 663
+++ LGV + E +L++E
Sbjct: 335 ADMLQGLGVARKL----ATEEATADLLRE 359
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 37/81 (45%)
Query: 8 KIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEVLY 67
+ LF+T G QE + P+I +P DQ N +++ LG+ + + + ++L
Sbjct: 299 QADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLR 358
Query: 68 NLMKEVLYNTSYMDTVKRISA 88
++ + ++RI A
Sbjct: 359 ETALALVDDPEVARRLRRIQA 379
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 373 WLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNL-GIGTY 431
W PQ +L HP I F+T G S ES+ VP++ PFF DQ + + I N IG
Sbjct: 360 WCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGME 419
Query: 432 MDFDSVSTEVLYNLMKEVL 450
+D +V E L L+ EV+
Sbjct: 420 ID-TNVKREELAKLINEVI 437
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 588 WLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFFGDQDYNVKIIKNL-GVGSY 646
W PQ +L HP++ F+ G S E++ VPM+ PFF DQ + + I N +G
Sbjct: 360 WCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGME 419
Query: 647 IDYDSINNENFYNLMKEIL 665
ID + + E L+ E++
Sbjct: 420 IDTN-VKREELAKLINEVI 437
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 6 HPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNL-GIGTYMDFDSVSTE 64
HP I F+T G S ES+ VP++ PFF DQ + + I N IG +D +V E
Sbjct: 369 HPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEID-TNVKRE 427
Query: 65 VLYNLMKEVL 74
L L+ EV+
Sbjct: 428 ELAKLINEVI 437
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 88/180 (48%), Gaps = 26/180 (14%)
Query: 312 EGAEKGVIYFSLGS--------NMRSASLEESKRSAILTTFAKFPQYRVI----WKWEEE 359
E +K V++ GS +R +L K S + ++ + +V +W E
Sbjct: 272 EQPDKSVVFLCFGSMGVSFGPSQIREIALG-LKHSGVRFLWSNSAEKKVFPEGFLEWMEL 330
Query: 360 QLPGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYN 419
+ G+ IC W PQ ++LAH I F++ G S+ ES++F VP++ P + +Q N
Sbjct: 331 EGKGM----IC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLN 385
Query: 420 V-KIIK--NLGIGTYMDF----DSVSTEVLYNLMKEVLYNTSYM-DTVKRISALSKTQMM 471
+++K +G+G +D+ D V+ E + +K+++ S + V+ + +S+ ++
Sbjct: 386 AFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVV 445
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
Query: 570 KWEEEQLPGLPSNVICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFFG 629
+W E + G+ IC W PQ ++LAH + F+ G S+ E+++F VP++ P +
Sbjct: 326 EWMELEGKGM----IC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYA 380
Query: 630 DQDYNV-KIIK--NLGVGSYIDY----DSINNENFYNLMKEIL 665
+Q N +++K +G+G +DY D + E +K+++
Sbjct: 381 EQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM 423
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 88/180 (48%), Gaps = 26/180 (14%)
Query: 312 EGAEKGVIYFSLGS--------NMRSASLEESKRSAILTTFAKFPQYRVI----WKWEEE 359
E +K V++ GS +R +L K S + ++ + +V +W E
Sbjct: 272 EQPDKSVVFLCFGSMGVSFGPSQIREIALG-LKHSGVRFLWSNSAEKKVFPEGFLEWMEL 330
Query: 360 QLPGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYN 419
+ G+ IC W PQ ++LAH I F++ G S+ ES++F VP++ P + +Q N
Sbjct: 331 EGKGM----IC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLN 385
Query: 420 V-KIIK--NLGIGTYMDF----DSVSTEVLYNLMKEVLYNTSYM-DTVKRISALSKTQMM 471
+++K +G+G +D+ D V+ E + +K+++ S + V+ + +S+ ++
Sbjct: 386 AFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVV 445
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 582 NVICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFFGDQDYNV-KIIK- 639
+IC W PQ ++LAH + F+ G S+ E+++F VP++ P + +Q N +++K
Sbjct: 334 GMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE 392
Query: 640 -NLGVGSYIDY----DSINNENFYNLMKEIL 665
+G+G +DY D + E +K+++
Sbjct: 393 WGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM 423
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 373 WLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKII 423
W PQ +LAHP F+T G S ESV +PLI P + +Q N ++
Sbjct: 346 WAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLL 396
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 588 WLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFFGDQDYNVKII 638
W PQ +LAHP+ F+ G S E+V +P+I P + +Q N ++
Sbjct: 346 WAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLL 396
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 6 HPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKII 47
HP F+T G S ESV +PLI P + +Q N ++
Sbjct: 355 HPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLL 396
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 364 LPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDY-NVKI 422
LP NV +W+P H +LAH + L T G ++ E+ VPL+ +P F + + +
Sbjct: 279 LPPNVEAHQWIPFHSVLAHARACL--THGTTGAVLEAFAAGVPLVLVPHFATEAAPSAER 336
Query: 423 IKNLGIGTYMDFDSVSTEVLYNLMKEVLYNTS 454
+ LG+G+ + D + + ++ + +++
Sbjct: 337 VIELGLGSVLRPDQLEPASIREAVERLAADSA 368
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 579 LPSNVICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFFGDQDY-NVKI 637
LP NV +W+P +LAH + + G ++ EA VP++ +P F + + +
Sbjct: 279 LPPNVEAHQWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAER 336
Query: 638 IKNLGVGSYIDYDSINNENFYNLMKEILYN 667
+ LG+GS + D + + ++ + +
Sbjct: 337 VIELGLGSVLRPDQLEPASIREAVERLAAD 366
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 580 PSNVICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFFGDQDYNVKIIK 639
P+NV +W+P LL I GG +L A+ VP IP QD N ++
Sbjct: 287 PANVRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT 344
Query: 640 NLGVGSYIDYDSINNENFYNLMKE 663
LG+G + S+ E L+ +
Sbjct: 345 GLGIGFDAEAGSLGAEQCRRLLDD 368
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 365 PSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIK 424
P+NV +W+P LL I GG +L ++ VP IP QD N ++
Sbjct: 287 PANVRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT 344
Query: 425 NLGIGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWI 481
LGIG + S+ E L+ + + + + +S +M P +TA +
Sbjct: 345 GLGIGFDAEAGSLGAEQCRRLLDDAGLREAALRVRQEMS-----EMPPPAETAAKLV 396
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 580 PSNVICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFFGDQDYNVKIIK 639
P+NV +W+P LL I GG +L A+ VP IP QD N ++
Sbjct: 287 PANVRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT 344
Query: 640 NLGVGSYIDYDSINNENFYNLMKE 663
LG+G + S+ E L+ +
Sbjct: 345 GLGIGFDAEAGSLGAEQCRRLLDD 368
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 365 PSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIK 424
P+NV +W+P LL I GG +L ++ VP IP QD N ++
Sbjct: 287 PANVRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT 344
Query: 425 NLGIGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWI 481
LGIG + S+ E L+ + + + + +S +M P +TA +
Sbjct: 345 GLGIGFDAEAGSLGAEQCRRLLDDAGLREAALRVRQEMS-----EMPPPAETAAXLV 396
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 12/163 (7%)
Query: 300 PKPLPE--DLRTWIEGAE--KGVIYFSLGSNMRSASLEESKRSAILTTFAKFPQYRVIWK 355
P P E DL W+ + + ++Y +LG++ S E R+AI A ++
Sbjct: 222 PVPFAEQGDLPAWLSSRDTARPLVYLTLGTS--SGGTVEVLRAAI-DGLAGLDADVLVAS 278
Query: 356 WEEEQLPGL---PSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPF 412
+ GL P+NV W+PQ LL H + L + GG + ++ VP + P+
Sbjct: 279 GPSLDVSGLGEVPANVRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPW 336
Query: 413 FGDQDYNVKIIKNLGIGTYMDFDSVSTEVLYNLMKEVLYNTSY 455
GD N + + G G ++ D++S + + K +L SY
Sbjct: 337 AGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESY 379
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 579 LPSNVICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFFGDQDYNVKII 638
+P+NV W+PQ LL P+V L + GG + A+ VP + P+ GD N + +
Sbjct: 290 VPANVRLESWVPQAALL--PHVDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAV 347
Query: 639 KNLGVGSYIDYDSINNENFYNLMKEIL 665
G G ++ D+I+ ++ K +L
Sbjct: 348 AQAGAGDHLLPDNISPDSVSGAAKRLL 374
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 357 EEEQLPGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQ 416
+ L LP NV +W+P +L + +T GG +L E++Y+ PL+ +P D
Sbjct: 288 DPAALGDLPPNVEAHRWVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDV 345
Query: 417 DYNVKIIKNLGIGTYMDFDSVSTEVL 442
+ + LG+G + + + L
Sbjct: 346 QPXARRVDQLGLGAVLPGEKADGDTL 371
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 572 EEEQLPGLPSNVICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFFGDQ 631
+ L LP NV +W+P +L V + GG +L EA+Y+ P++ +P D
Sbjct: 288 DPAALGDLPPNVEAHRWVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDV 345
Query: 632 DYNVKIIKNLGVGSYIDYDSINNENF 657
+ + LG+G+ + + + +
Sbjct: 346 QPXARRVDQLGLGAVLPGEKADGDTL 371
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 4 TPHPKI----KLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFD 59
PH K+ + +T GG +L E++Y+ PL+ +P D + + LG+G + +
Sbjct: 305 VPHVKVLEQATVCVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLGAVLPGE 364
Query: 60 SVSTEVL 66
+ L
Sbjct: 365 KADGDTL 371
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 357 EEEQLPGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQ 416
+ L LP NV +W+P +L + +T GG +L E++Y+ PL+ +P D
Sbjct: 288 DPAALGDLPPNVEAHRWVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDV 345
Query: 417 DYNVKIIKNLGIGTYMDFDSVSTEVL 442
+ + LG+G + + + L
Sbjct: 346 QPXARRVDQLGLGAVLPGEKADGDTL 371
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 572 EEEQLPGLPSNVICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFFGDQ 631
+ L LP NV +W+P +L V + GG +L EA+Y+ P++ +P D
Sbjct: 288 DPAALGDLPPNVEAHRWVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDV 345
Query: 632 DYNVKIIKNLGVGSYIDYDSINNENF 657
+ + LG+G+ + + + +
Sbjct: 346 QPXARRVDQLGLGAVLPGEKADGDTL 371
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 4 TPHPKI----KLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFD 59
PH K+ + +T GG +L E++Y+ PL+ +P D + + LG+G + +
Sbjct: 305 VPHVKVLEQATVCVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLGAVLPGE 364
Query: 60 SVSTEVL 66
+ L
Sbjct: 365 KADGDTL 371
>pdb|1HH2|P Chain P, Crystal Structure Of Nusa From Thermotoga Maritima
Length = 344
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 532 GRTITRTAKQCYLQEVVE-------SKRSAILTTLDKFPQYRVIWKWEEEQLPGLPSNVI 584
GR +TAKQ +Q + E K S + T+ RV+ +W + ++ L + +
Sbjct: 103 GRIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRIGKLETRLP 162
Query: 585 CRKWLPQQDLLAHPNVKLFIM 605
++W+P +++ A VK++I+
Sbjct: 163 KKEWIPGEEIKAGDLVKVYII 183
>pdb|1L2F|A Chain A, Crystal Structure Of Nusa From Thermotoga Maritima: A
Structure-Based Role Of The N-Terminal Domain
Length = 369
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 532 GRTITRTAKQCYLQEVVE-------SKRSAILTTLDKFPQYRVIWKWEEEQLPGLPSNVI 584
GR +TAKQ +Q + E K S + T+ RV +W + ++ L + +
Sbjct: 128 GRIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVXGEWADIRIGKLETRLP 187
Query: 585 CRKWLPQQDLLAHPNVKLFIM 605
++W+P +++ A VK++I+
Sbjct: 188 KKEWIPGEEIKAGDLVKVYII 208
>pdb|3CYI|A Chain A, Crystal Structure Of Human Sulfiredoxin (Srx) In Complex
With Atp:mg2+
Length = 110
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 299 DPKPLPEDLRTWIEGAEKGVIYFSLGSNMRSASLEESKRSAI 340
DP +P WI+GA+ G ++S G + R A+ ++ +R I
Sbjct: 45 DPDSVPPIDVLWIKGAQGGDYFYSFGGSHRYAAYQQLQRETI 86
>pdb|3HY2|X Chain X, Crystal Structure Of Sulfiredoxin In Complex With
Peroxiredoxin I And Atp:mg2+
pdb|3HY2|Y Chain Y, Crystal Structure Of Sulfiredoxin In Complex With
Peroxiredoxin I And Atp:mg2+
Length = 110
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 299 DPKPLPEDLRTWIEGAEKGVIYFSLGSNMRSASLEESKRSAI 340
DP +P WI+GA+ G ++S G R A+ ++ +R I
Sbjct: 45 DPDSVPPIDVLWIKGAQGGDYFYSFGGAHRYAAYQQLQRETI 86
>pdb|1XW4|X Chain X, Crystal Structure Of Human Sulfiredoxin (Srx) In Complex
With Adp
Length = 110
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 299 DPKPLPEDLRTWIEGAEKGVIYFSLGSNMRSASLEESKRSAI 340
DP +P WI+GA+ G ++S G R A+ ++ +R I
Sbjct: 45 DPDSVPPIDVLWIKGAQGGDYFYSFGGXHRYAAYQQLQRETI 86
>pdb|1YZS|A Chain A, Solution Structure Of Human Sulfiredoxin (Srx)
pdb|2B6F|A Chain A, Solution Structure Of Human Sulfiredoxin (Srx)
Length = 121
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 299 DPKPLPEDLRTWIEGAEKGVIYFSLGSNMRSASLEESKRSAI 340
DP +P WI+GA+ G ++S G R A+ ++ +R I
Sbjct: 56 DPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETI 97
>pdb|1XW3|A Chain A, Crystal Structure Of Human Sulfiredoxin (srx)
Length = 110
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 299 DPKPLPEDLRTWIEGAEKGVIYFSLGSNMRSASLEESKRSAI 340
DP +P WI+GA+ G ++S G R A+ ++ +R I
Sbjct: 45 DPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETI 86
>pdb|2RII|X Chain X, Crystal Structure Of Human Peroxiredoxin I In Complex With
Sulfiredoxin
pdb|2RII|Y Chain Y, Crystal Structure Of Human Peroxiredoxin I In Complex With
Sulfiredoxin
Length = 110
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 299 DPKPLPEDLRTWIEGAEKGVIYFSLGSNMRSASLEESKRSAI 340
DP +P WI+GA+ G ++S G R A+ ++ +R I
Sbjct: 45 DPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETI 86
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 560 DKFPQYRVIWKWEEEQL-PGLP--SNVICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAV 616
DK P R ++ E EQ+ P P S++ C +W+ +++L N++ ++ ++ Q
Sbjct: 75 DKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQ 134
Query: 617 YFEVPMIG 624
+ + MIG
Sbjct: 135 RYPLEMIG 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,579,539
Number of Sequences: 62578
Number of extensions: 968402
Number of successful extensions: 2076
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2015
Number of HSP's gapped (non-prelim): 63
length of query: 668
length of database: 14,973,337
effective HSP length: 105
effective length of query: 563
effective length of database: 8,402,647
effective search space: 4730690261
effective search space used: 4730690261
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)