RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16117
(668 letters)
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 234 bits (598), Expect = 1e-73
Identities = 59/167 (35%), Positives = 103/167 (61%), Gaps = 4/167 (2%)
Query: 300 PKPLPEDLRTWIEGA-EKGVIYFSLGSNMRSASLEESKRSAILTTFAKFPQYRVIWKWEE 358
KPLP+++ +++ + E GV+ FSLGS + + + E + + I + A+ PQ +V+W+++
Sbjct: 4 AKPLPKEMEDFVQSSGENGVVVFSLGSMVSN--MTEERANVIASALAQIPQ-KVLWRFDG 60
Query: 359 EQLPGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDY 418
+ L N KW+PQ+DLL HPK + FIT GG + E++Y +P++GIP F DQ
Sbjct: 61 NKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPD 120
Query: 419 NVKIIKNLGIGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISAL 465
N+ +K G +DF+++S+ L N +K V+ + SY + V ++S +
Sbjct: 121 NIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDPSYKENVMKLSRI 167
Score = 173 bits (440), Expect = 8e-51
Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Query: 549 ESKRSAILTTLDKFPQYRVIWKWEEEQLPGLPSNVICRKWLPQQDLLAHPNVKLFIMQGG 608
E + + I + L + PQ +V+W+++ + L N KW+PQ DLL HP + FI GG
Sbjct: 37 EERANVIASALAQIPQ-KVLWRFDGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGG 95
Query: 609 LQSLQEAVYFEVPMIGIPFFGDQDYNVKIIKNLGVGSYIDYDSINNENFYNLMKEILYN 667
+ EA+Y +PM+GIP F DQ N+ +K G +D++++++ + N +K ++ +
Sbjct: 96 ANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVIND 154
Score = 120 bits (304), Expect = 6e-32
Identities = 31/84 (36%), Positives = 52/84 (61%)
Query: 6 HPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEV 65
HPK + FIT GG + E++Y +P++GIP F DQ N+ +K G +DF+++S+
Sbjct: 84 HPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTD 143
Query: 66 LYNLMKEVLYNTSYMDTVKRISAL 89
L N +K V+ + SY + V ++S +
Sbjct: 144 LLNALKRVINDPSYKENVMKLSRI 167
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 181 bits (461), Expect = 7e-51
Identities = 68/398 (17%), Positives = 127/398 (31%), Gaps = 53/398 (13%)
Query: 112 GGNLRHLQPDHWDMPWYQYFGLDVFLVLLSPVI--LVLYLDKEKPTFDLLLYEKIMHTGY 169
L D ++ FL + L + P DL+L++ +
Sbjct: 61 HSTLPGPDADPEAWGSTLLDNVEPFLNDAIQALPQLADAYADDIP--DLVLHDITSYPAR 118
Query: 170 LGILPKIGHPPSIAILTLPLPCVLDSSLGYMCNPAVVPENMLMGFTNKMTFWERLQNHLF 229
+ L + P++++ + E + + ER + +
Sbjct: 119 V--LARRWGVPAVSLSP-----------NLVAWKGYEEE-VAEPMWREPRQTERGRAYYA 164
Query: 230 IFMMHIYLNTHVMKGQNELARKYFGHTGEPTLQQMDRNKSLLMMTNSWLYQYPRPVFPNT 289
F + L + R+ L+++ + R
Sbjct: 165 RF-------------EAWLKENGITEHPDTFASHPPRS--LVLIPKALQPHADRVDEDVY 209
Query: 290 INVGPTHIGDPKPLPEDLRTWIEGAEKGVIYFSLGSNMRSASLEESKRSAILTTFAKFPQ 349
VG GD R + V+ SLGS + + F P
Sbjct: 210 TFVGACQ-GDRAEEGGWQR---PAGAEKVVLVSLGSAFTKQ---PAFYRECVRAFGNLPG 262
Query: 350 YRVIW----KWEEEQLPGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEV 405
+ ++ K +L LP NV W+PQ +L LF+T G QE +
Sbjct: 263 WHLVLQIGRKVTPAELGELPDNVEVHDWVPQLAILRQAD--LFVTHAGAGGSQEGLATAT 320
Query: 406 PLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISAL 465
P+I +P DQ N +++ LG+ + + + ++L ++ + ++RI A
Sbjct: 321 PMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAE 380
Query: 466 SKTQMMSPRDTAVWWIEYVLKSGGNLRHLQPD-HWDMP 502
+ + R A IE L + RH + + D P
Sbjct: 381 MAQEGGTRR--AADLIEAELPA----RHERQEPVGDRP 412
Score = 106 bits (265), Expect = 1e-24
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 6/118 (5%)
Query: 554 AILTTLDKFPQYRVIW----KWEEEQLPGLPSNVICRKWLPQQDLLAHPNVKLFIMQGGL 609
+ P + ++ K +L LP NV W+PQ +L ++ F+ G
Sbjct: 252 ECVRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVHDWVPQLAILRQADL--FVTHAGA 309
Query: 610 QSLQEAVYFEVPMIGIPFFGDQDYNVKIIKNLGVGSYIDYDSINNENFYNLMKEILYN 667
QE + PMI +P DQ N +++ LGV + + + ++ +
Sbjct: 310 GGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDD 367
Score = 94.1 bits (234), Expect = 1e-20
Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 9/123 (7%)
Query: 5 PHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTE 64
LF+T G QE + P+I +P DQ N +++ LG+ + + + +
Sbjct: 298 RQAD--LFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATAD 355
Query: 65 VLYNLMKEVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWIEYVLKSGGNLRHLQPD-HW 123
+L ++ + ++RI A + + R A IE L + RH + +
Sbjct: 356 LLRETALALVDDPEVARRLRRIQAEMAQEGGTRR--AADLIEAELPA----RHERQEPVG 409
Query: 124 DMP 126
D P
Sbjct: 410 DRP 412
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 170 bits (433), Expect = 6e-47
Identities = 62/373 (16%), Positives = 120/373 (32%), Gaps = 33/373 (8%)
Query: 124 DMPWYQYFGLDVFLVLLSPVI--LVLYLDKEKPTFDLLLYEKIMHTGYLGILPKIGHPPS 181
P Q + +FL V+ L ++P DL++Y+ + L + P
Sbjct: 78 SWPEDQESAMGLFLDEAVRVLPQLEDAYADDRP--DLIVYDIASWPAPV--LGRKWDIPF 133
Query: 182 IAILTLPLPCVLDSSLGYMCNPAVVPENMLMGFTNKMTFWERLQNHLFIFMMHIYLNTHV 241
+ + + + + + + + + +
Sbjct: 134 VQLSPTFVA--YEGFEEDVPAVQDPTADRGEEAAAPAGTGDAEEGAEAEDGLVRFFT--- 188
Query: 242 MKGQNELARKYFGHTGEPTLQQMDRNKSLLMMTNSWLYQYPRPVFP-NTINVGPTHIGDP 300
L+ H + + + ++ +Q N VGPT+ GD
Sbjct: 189 -----RLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQIKGDTVGDNYTFVGPTY-GDR 242
Query: 301 KPLPEDLRTWIEGAEKGVIYFSLGSNMRSASLEESKRSAILTTFAKFPQYRVIWKW---- 356
G + V+ +LGS L+ V+
Sbjct: 243 SHQGTWEG---PGDGRPVLLIALGSAFTDH---LDFYRTCLSAVDGLDW-HVVLSVGRFV 295
Query: 357 EEEQLPGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQ 416
+ L +P NV +W+PQ D+L FIT G+ S E++ VP++ +P +Q
Sbjct: 296 DPADLGEVPPNVEVHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQ 353
Query: 417 DYNVKIIKNLGIGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISALSKTQMMSPRDT 476
N + I LG+G ++ D V+ E L + V + + + + +
Sbjct: 354 TMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPGVAERLAAVRQEIREA--GGARA 411
Query: 477 AVWWIEYVLKSGG 489
A +E +L G
Sbjct: 412 AADILEGILAEAG 424
Score = 97.1 bits (242), Expect = 1e-21
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 554 AILTTLDKFPQYRVIWKW----EEEQLPGLPSNVICRKWLPQQDLLAHPNVKLFIMQGGL 609
L+ +D V+ + L +P NV +W+PQ D+L FI G+
Sbjct: 275 TCLSAVDGLDW-HVVLSVGRFVDPADLGEVPPNVEVHQWVPQLDILTK--ASAFITHAGM 331
Query: 610 QSLQEAVYFEVPMIGIPFFGDQDYNVKIIKNLGVGSYIDYDSINNENFYNLMKEILYN 667
S EA+ VPM+ +P +Q N + I LG+G +I D + E + + +
Sbjct: 332 GSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASD 389
Score = 95.2 bits (237), Expect = 5e-21
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 7 PKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEVL 66
K FIT G+ S E++ VP++ +P +Q N + I LG+G ++ D V+ E L
Sbjct: 320 TKASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKL 379
Query: 67 YNLMKEVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWIEYVLKSGG 113
+ V + + + + + A +E +L G
Sbjct: 380 REAVLAVASDPGVAERLAAVRQEIREA--GGARAAADILEGILAEAG 424
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 141 bits (356), Expect = 1e-36
Identities = 60/380 (15%), Positives = 123/380 (32%), Gaps = 55/380 (14%)
Query: 120 PDHWDMPWYQYFGLDVFLVLLSPVI--LVLYLDKEKPTFDLLLYEKIMHTGYLGILPKIG 177
P+ + V++ ++ L P DL++Y+ + +L
Sbjct: 67 PEVVKQEDAETQLHLVYVRENVAILRAAEEALGDNPP--DLVVYD-VFPFIAGRLLAARW 123
Query: 178 HPPSIAILTLPLPCVLDSSLGYMCNPAVVPENMLMGFTNKMTFWERLQNHLFIFMMHIYL 237
P++ + + ++ E E + + L +
Sbjct: 124 DRPAVRLTG---------GFAANEHYSLFKELWKSNGQRHPADVEAVHSVLVDLLGKY-- 172
Query: 238 NTHVMKGQNELARKYFGHTGEPTLQQMDRNKSLLMMTNSWLYQYPRPVFPNTIN-VGPTH 296
G + ++Y+ T+ + +Q F VGPT
Sbjct: 173 ------GVDTPVKEYWDEIEGLTIVFL-----------PKSFQPFAETFDERFAFVGPT- 214
Query: 297 IGDPKPLPEDLRTWIEGAEKGVIYFSLGS--NMRSASLEESKRSAILTTFAKFPQYRVIW 354
+ P + V+ SLG+ N A FA P V+
Sbjct: 215 LTGRDGQPGWQP---PRPDAPVLLVSLGNQFNEHPEFFR-----ACAQAFADTPW-HVVM 265
Query: 355 ----KWEEEQLPGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGI 410
+ L LP NV +W+P H +LAH + +T G ++ E+ VPL+ +
Sbjct: 266 AIGGFLDPAVLGPLPPNVEAHQWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLV 323
Query: 411 PFFG-DQDYNVKIIKNLGIGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISALSKTQ 469
P F + + + + LG+G+ + D + + ++ + +++ + V+R+ +
Sbjct: 324 PHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAVRERVRRMQRDILS- 382
Query: 470 MMSPRDTAVWWIEYVLKSGG 489
A +E L
Sbjct: 383 -SGGPARAADEVEAYLGRVA 401
Score = 83.6 bits (207), Expect = 2e-17
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 8/119 (6%)
Query: 554 AILTTLDKFPQYRVIW----KWEEEQLPGLPSNVICRKWLPQQDLLAHPNVKLFIMQGGL 609
A P V+ + L LP NV +W+P +LAH + + G
Sbjct: 251 ACAQAFADTPW-HVVMAIGGFLDPAVLGPLPPNVEAHQWIPFHSVLAH--ARACLTHGTT 307
Query: 610 QSLQEAVYFEVPMIGIPFFG-DQDYNVKIIKNLGVGSYIDYDSINNENFYNLMKEILYN 667
++ EA VP++ +P F + + + + LG+GS + D + + ++ + +
Sbjct: 308 GAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAAD 366
Score = 75.5 bits (186), Expect = 1e-14
Identities = 17/108 (15%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 7 PKIKLFITQGGLQSLQESVYFEVPLIGIPFFG-DQDYNVKIIKNLGIGTYMDFDSVSTEV 65
+ +T G ++ E+ VPL+ +P F + + + + LG+G+ + D +
Sbjct: 296 AHARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPAS 355
Query: 66 LYNLMKEVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWIEYVLKSGG 113
+ ++ + +++ + V+R+ + A +E L
Sbjct: 356 IREAVERLAADSAVRERVRRMQRDILS--SGGPARAADEVEAYLGRVA 401
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 135 bits (341), Expect = 2e-34
Identities = 62/345 (17%), Positives = 115/345 (33%), Gaps = 54/345 (15%)
Query: 149 LDKEKPTFDLLLYEKIMHTGYLGILPKIGHPPSIAILTLPLPCVLDSSLGYMCNPAVVPE 208
LD + P DL+LY+ +L P++ +
Sbjct: 114 LDGDVP--DLVLYD-DFPFIAGQLLAARWRRPAVRLSAAFAS------------------ 152
Query: 209 NMLMGFTNKMTFWERLQNHLFIFMMHIYLNTHVMK-GQNELARKYFGHTGEPTLQQMDRN 267
N F+ M + L + + L + + G + + H + L +
Sbjct: 153 NEHYSFSQDMVTLAGTIDPLDLPVFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFV--- 209
Query: 268 KSLLMMTNSWLYQYPRPVFP-NTINVGPTHIGDPKPLPEDLRTWIEGAEKGVIYFSLGS- 325
+Q F + VGP D + L E R + V+ SLG+
Sbjct: 210 --------PKAFQIAGDTFDDRFVFVGPC-FDDRRFLGEWTR---PADDLPVVLVSLGTT 257
Query: 326 -NMRSASLEESKRSAILTTFAKFPQYRVI----WKWEEEQLPGLPSNVICRKWLPQHDLL 380
N R F P V+ + + L LP NV +W+P +L
Sbjct: 258 FNDRPGFFR-----DCARAFDGQPW-HVVMTLGGQVDPAALGDLPPNVEAHRWVPHVKVL 311
Query: 381 AHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTE 440
+ + +T GG+ +L E++Y+ PL+ +P D + + LG+G + + +
Sbjct: 312 --EQATVCVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGD 369
Query: 441 VLYNLMKEVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWIEYVL 485
L + V + + + V+ + + A +E L
Sbjct: 370 TLLAAVGAVAADPALLARVEAMRGHVRR--AGGAARAADAVEAYL 412
Score = 82.4 bits (204), Expect = 6e-17
Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 7/118 (5%)
Query: 554 AILTTLDKFPQYRVI----WKWEEEQLPGLPSNVICRKWLPQQDLLAHPNVKLFIMQGGL 609
D P V+ + + L LP NV +W+P +L + + GG+
Sbjct: 267 DCARAFDGQPW-HVVMTLGGQVDPAALGDLPPNVEAHRWVPHVKVLEQ--ATVCVTHGGM 323
Query: 610 QSLQEAVYFEVPMIGIPFFGDQDYNVKIIKNLGVGSYIDYDSINNENFYNLMKEILYN 667
+L EA+Y+ P++ +P D + + LG+G+ + + + + + + +
Sbjct: 324 GTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAAD 381
Score = 76.3 bits (188), Expect = 6e-15
Identities = 21/109 (19%), Positives = 45/109 (41%), Gaps = 6/109 (5%)
Query: 5 PH----PKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDS 60
PH + + +T GG+ +L E++Y+ PL+ +P D + + LG+G + +
Sbjct: 306 PHVKVLEQATVCVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEK 365
Query: 61 VSTEVLYNLMKEVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWIEYVL 109
+ L + V + + + V+ + + A +E L
Sbjct: 366 ADGDTLLAAVGAVAADPALLARVEAMRGHVRR--AGGAARAADAVEAYL 412
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 120 bits (304), Expect = 1e-29
Identities = 49/253 (19%), Positives = 88/253 (34%), Gaps = 40/253 (15%)
Query: 246 NELARKY--------FGHTGEPTLQQMDRNKSLLMMTNSWLYQYPRPVFPNTINVGPTHI 297
LA++ G P + L + P + P
Sbjct: 176 RGLAQRLGLDLPPGRIDGFGNPFIDIFPP----------SLQEPEFRARPRRHELRPVPF 225
Query: 298 GDPKPLPEDLRTWIEGAEKGVIYFSLGS--NMRSASLEESKRSAILTTFAKFPQYRVI-- 353
+ LP L + A ++Y +LG+ L A + A V+
Sbjct: 226 AEQGDLPAWLS-SRDTARP-LVYLTLGTSSGGTVEVLR-----AAIDGLAGLDA-DVLVA 277
Query: 354 --WKWEEEQLPGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIP 411
+ L +P+NV W+PQ LL P + L + GG + ++ VP + P
Sbjct: 278 SGPSLDVSGLGEVPANVRLESWVPQAALL--PHVDLVVHHGGSGTTLGALGAGVPQLSFP 335
Query: 412 FFGDQDYNVKIIKNLGIGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISALSKTQM- 470
+ GD N + + G G ++ D++S + + K +L SY + ++A ++
Sbjct: 336 WAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYRAGARAVAA----EIA 391
Query: 471 -MSPRDTAVWWIE 482
M D V +
Sbjct: 392 AMPGPDEVVRLLP 404
Score = 77.0 bits (190), Expect = 4e-15
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 566 RVI----WKWEEEQLPGLPSNVICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVP 621
V+ + L +P+NV W+PQ LL H V L + GG + A+ VP
Sbjct: 273 DVLVASGPSLDVSGLGEVPANVRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVP 330
Query: 622 MIGIPFFGDQDYNVKIIKNLGVGSYIDYD 650
+ P+ GD N + + G G ++ D
Sbjct: 331 QLSFPWAGDSFANAQAVAQAGAGDHLLPD 359
Score = 65.1 bits (159), Expect = 3e-11
Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 10/108 (9%)
Query: 5 PH----PKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDS 60
P P + L + GG + ++ VP + P+ GD N + + G G ++ D+
Sbjct: 301 PQAALLPHVDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDN 360
Query: 61 VSTEVLYNLMKEVLYNTSYMDTVKRISALSKTQM--MSPRDTAVWWIE 106
+S + + K +L SY + ++A ++ M D V +
Sbjct: 361 ISPDSVSGAAKRLLAEESYRAGARAVAA----EIAAMPGPDEVVRLLP 404
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 111 bits (280), Expect = 1e-26
Identities = 42/297 (14%), Positives = 86/297 (28%), Gaps = 23/297 (7%)
Query: 203 PAVVPENMLMGFTNKMTFWERLQNHLFIFMMHIYLNTHVMKGQNELARKYFGHTGEPTLQ 262
P + + + N LN+H R G +
Sbjct: 138 PPLGEPSTQDTIDIPAQW--ERNNQSAYQRYGGLLNSH---------RDAIGLPPVEDIF 186
Query: 263 QMDRNKSLLMMTNSWLYQYPRPVFPNTINVGPTHIGDPKPLPEDLRTWIEGAEKGVIYFS 322
+ + L +P + + G + D +PL +L +++ +Y
Sbjct: 187 TFGYTDHPWVAADPVLA-PLQPTDLDAVQTGAWILPDERPLSPELAAFLDAGPP-PVYLG 244
Query: 323 LGSNMRSASLEESKRSAILTTFAKFPQYRVIWK-WEEEQLPGLPSNVICRKWLPQHDLLA 381
GS A + + ++ + W + LP ++ + L
Sbjct: 245 FGSLGAPADAVR----VAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQVLF- 299
Query: 382 HPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEV 441
++ I GG + + P I +P DQ Y + LG+G D + +
Sbjct: 300 -GRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDS 358
Query: 442 LYNLMKEVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWIEYVLKSGGNLRHLQPDH 498
L + L ++ +T A ++ V + + L+ H
Sbjct: 359 LSAALATAL-TPETHARATAVAGTIRTD--GAAVAARLLLDAVSREKPTVSALEHHH 412
Score = 72.6 bits (178), Expect = 9e-14
Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 4/103 (3%)
Query: 565 YRVIW--KWEEEQLPGLPSNVICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPM 622
RVI W + LP ++ + Q L V I GG + A P
Sbjct: 267 RRVILSRGWADLVLPDDGADCFAIGEVNHQVLF--GRVAAVIHHGGAGTTHVAARAGAPQ 324
Query: 623 IGIPFFGDQDYNVKIIKNLGVGSYIDYDSINNENFYNLMKEIL 665
I +P DQ Y + LGVG D ++ + L
Sbjct: 325 ILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATAL 367
Score = 58.7 bits (142), Expect = 3e-09
Identities = 21/125 (16%), Positives = 39/125 (31%), Gaps = 7/125 (5%)
Query: 2 SNTPH----PKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMD 57
H ++ I GG + + P I +P DQ Y + LG+G D
Sbjct: 291 GEVNHQVLFGRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHD 350
Query: 58 FDSVSTEVLYNLMKEVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWIEYVLKSGGNLRH 117
+ + L + L ++ +T A ++ V + +
Sbjct: 351 GPIPTFDSLSAALATAL-TPETHARATAVAGTIRTD--GAAVAARLLLDAVSREKPTVSA 407
Query: 118 LQPDH 122
L+ H
Sbjct: 408 LEHHH 412
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 111 bits (278), Expect = 2e-26
Identities = 36/269 (13%), Positives = 74/269 (27%), Gaps = 14/269 (5%)
Query: 233 MHIYLNTHVMKGQNELARKYFGHTGEPTLQQMDRNKSLLMMTNSWLYQYPRPVFPNTINV 292
M+ + R G L + + RP T+
Sbjct: 140 MYNQGADRLFGDAVNSHRASIGLPPVEHLYDYGYTDQPWLAA-DPVLSPLRPTDLGTVQT 198
Query: 293 GPTHIGDPKPLPEDLRTWIEGAEKGVIYFSLGSNMRSASLEESKRSAILTTFAKFPQYRV 352
G + D +PL +L ++ +Y GS A + + RV
Sbjct: 199 GAWILPDQRPLSAELEGFLRAGSP-PVYVGFGSGPAPAEAAR----VAIEAVRAQGR-RV 252
Query: 353 I--WKWEEEQLPGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGI 410
+ W + + + L ++ + GG + P + +
Sbjct: 253 VLSSGWAGLGRIDEGDDCLVVGEVNHQVLF--GRVAAVVHHGGAGTTTAVTRAGAPQVVV 310
Query: 411 PFFGDQDYNVKIIKNLGIGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISALSKTQM 470
P DQ Y + +LG+G D + + E L + L ++ +
Sbjct: 311 PQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATAL-TPGIRARAAAVAG--TIRT 367
Query: 471 MSPRDTAVWWIEYVLKSGGNLRHLQPDHW 499
A +E + + ++ +
Sbjct: 368 DGTTVAAKLLLEAISRQRSSVPAAKLAAA 396
Score = 70.7 bits (173), Expect = 4e-13
Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 4/102 (3%)
Query: 566 RVI--WKWEEEQLPGLPSNVICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMI 623
RV+ W + + + Q L V + GG + P +
Sbjct: 251 RVVLSSGWAGLGRIDEGDDCLVVGEVNHQVLF--GRVAAVVHHGGAGTTTAVTRAGAPQV 308
Query: 624 GIPFFGDQDYNVKIIKNLGVGSYIDYDSINNENFYNLMKEIL 665
+P DQ Y + +LGVG D + E+ + L
Sbjct: 309 VVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATAL 350
Score = 59.1 bits (143), Expect = 2e-09
Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 7/126 (5%)
Query: 2 SNTPH----PKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMD 57
H ++ + GG + P + +P DQ Y + +LG+G D
Sbjct: 274 GEVNHQVLFGRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHD 333
Query: 58 FDSVSTEVLYNLMKEVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWIEYVLKSGGNLRH 117
+ + E L + L ++ + A +E + + ++
Sbjct: 334 GPTPTVESLSAALATAL-TPGIRARAAAVAG--TIRTDGTTVAAKLLLEAISRQRSSVPA 390
Query: 118 LQPDHW 123
+
Sbjct: 391 AKLAAA 396
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 109 bits (273), Expect = 1e-25
Identities = 36/208 (17%), Positives = 68/208 (32%), Gaps = 14/208 (6%)
Query: 281 YPRPVFPNTINVGPTHIGDPKPLPEDLRTWI-EGAEKGVIYFSLGSNMRSASLEESKRSA 339
+ D P + W+ + E+ + +LG + R S+ +
Sbjct: 232 PAAIRLDTGLKTVGMRYVDYNG-PSVVPEWLHDEPERRRVCLTLGISSRENSIGQVSIEE 290
Query: 340 ILTTFAKFPQYRVIW---KWEEEQLPGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQS 396
+L +I + E + +P NV ++P H LL P + GG S
Sbjct: 291 LLGAVGDVDA-EIIATFDAQQLEGVANIPDNVRTVGFVPMHALL--PTCAATVHHGGPGS 347
Query: 397 LQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEVLYNLMKEVLYNTSYM 456
+ VP + +P D + + G G + ++ + L +K VL + ++
Sbjct: 348 WHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDDPAHR 407
Query: 457 DTVKRISALSKTQM--MSPRDTAVWWIE 482
R+ M V E
Sbjct: 408 AGAARMRD----DMLAEPSPAEVVGICE 431
Score = 72.5 bits (178), Expect = 1e-13
Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 6/115 (5%)
Query: 554 AILTTLDKFPQYRVIW---KWEEEQLPGLPSNVICRKWLPQQDLLAHPNVKLFIMQGGLQ 610
+L + +I + E + +P NV ++P LL + GG
Sbjct: 290 ELLGAVGDVDA-EIIATFDAQQLEGVANIPDNVRTVGFVPMHALLPT--CAATVHHGGPG 346
Query: 611 SLQEAVYFEVPMIGIPFFGDQDYNVKIIKNLGVGSYIDYDSINNENFYNLMKEIL 665
S A VP + +P D + + G G + + + +K +L
Sbjct: 347 SWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVL 401
Score = 66.8 bits (163), Expect = 9e-12
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 10/110 (9%)
Query: 3 NTPH----PKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDF 58
P P + GG S + VP + +P D + + G G +
Sbjct: 326 FVPMHALLPTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPV 385
Query: 59 DSVSTEVLYNLMKEVLYNTSYMDTVKRISALSKTQM--MSPRDTAVWWIE 106
++ + L +K VL + ++ R+ M V E
Sbjct: 386 PELTPDQLRESVKRVLDDPAHRAGAARMRD----DMLAEPSPAEVVGICE 431
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 104 bits (260), Expect = 5e-24
Identities = 52/312 (16%), Positives = 94/312 (30%), Gaps = 36/312 (11%)
Query: 184 ILTLPLPCVLDSSLGYMCNPAVVPENMLMGFTNKMTFWERLQNHLFIFMMHIYLNTHVMK 243
++P P L S PA ++ + + F LN
Sbjct: 122 FYSVPSPVYLASP---HLPPAYDEPTTPGVTDIRVLW--EERAARFADRYGPTLNRR--- 173
Query: 244 GQNELARKYFGHTGEPTLQQMDRNKSLLMMTNSWLYQYPRPVFPNTINVGPTHIGDPKPL 303
R G + + L+ + L P + + G + D +PL
Sbjct: 174 ------RAEIGLPPVEDVFGYGHGERPLLAADPVLA--PLQPDVDAVQTGAWLLSDERPL 225
Query: 304 PEDLRTWIEGAEKGVIYFSLGSNMRSASLEESKRSAILTTFAKFPQYRVI--WKWEEEQL 361
P +L ++ ++ GS + ++ + + + RVI W E L
Sbjct: 226 PPELEAFLAAGSP-PVHIGFGS-SSGRGIADAAK-VAVEAIRAQGR-RVILSRGWTELVL 281
Query: 362 PGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVK 421
P + + L ++ I G + + VP + IP DQ Y
Sbjct: 282 PDDRDDCFAIDEVNFQALF--RRVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAG 339
Query: 422 IIKNLGIGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISALSKT-----------QM 470
+ LGIG D + + E L + VL + ++ + T
Sbjct: 340 RVAALGIGVAHDGPTPTFESLSAALTTVL-APETRARAEAVAGMVLTDGAAAAADLVLAA 398
Query: 471 MSPRDTAVWWIE 482
+ AV +E
Sbjct: 399 VGREKPAVPALE 410
Score = 67.6 bits (165), Expect = 4e-12
Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 4/103 (3%)
Query: 565 YRVI--WKWEEEQLPGLPSNVICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPM 622
RVI W E LP + + Q L V I G + A VP
Sbjct: 268 RRVILSRGWTELVLPDDRDDCFAIDEVNFQALF--RRVAAVIHHGSAGTEHVATRAGVPQ 325
Query: 623 IGIPFFGDQDYNVKIIKNLGVGSYIDYDSINNENFYNLMKEIL 665
+ IP DQ Y + LG+G D + E+ + +L
Sbjct: 326 LVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTVL 368
Score = 56.4 bits (136), Expect = 1e-08
Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 16/117 (13%)
Query: 5 PH----PKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDS 60
++ I G + + VP + IP DQ Y + LGIG D +
Sbjct: 295 NFQALFRRVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPT 354
Query: 61 VSTEVLYNLMKEVLYNTSYMDTVKRISALSKT-----------QMMSPRDTAVWWIE 106
+ E L + VL + ++ + T + AV +E
Sbjct: 355 PTFESLSAALTTVL-APETRARAEAVAGMVLTDGAAAAADLVLAAVGREKPAVPALE 410
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 97.1 bits (242), Expect = 1e-21
Identities = 28/211 (13%), Positives = 69/211 (32%), Gaps = 17/211 (8%)
Query: 280 QYPRPVFPNTINVGPTHIGDPKPLPEDLRTWIEGAEKGVIYFSLGSNMRSASLEESKRS- 338
+ ++ + E ++ + + G+ + +
Sbjct: 195 EAQPKPGT----TKMRYVPYNGRNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGL 250
Query: 339 ----AILTTFAKFPQYRVIW---KWEEEQLPGLPSNVICRKWLPQHDLLAHPKIKLFITQ 391
A+ K V+ + L LP V+ P ++ P + +
Sbjct: 251 SLLQALSQELPKLGF-EVVVAVSDKLAQTLQPLPEGVLAAGQFPLSAIM--PACDVVVHH 307
Query: 392 GGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEVLYNLMKEVLY 451
GG + + VP + +P + + +++ G G + ++ E + +
Sbjct: 308 GGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRD 367
Query: 452 NTSYMDTVKRISALSKTQMMSPRDTAVWWIE 482
++SY+ +R++A + +P D V IE
Sbjct: 368 DSSYVGNARRLAA-EMATLPTPAD-IVRLIE 396
Score = 69.0 bits (169), Expect = 1e-12
Identities = 13/88 (14%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 566 RVIW---KWEEEQLPGLPSNVICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPM 622
V+ + L LP V+ P ++ + + GG + + VP
Sbjct: 266 EVVVAVSDKLAQTLQPLPEGVLAAGQFPLSAIMPA--CDVVVHHGGHGTTLTCLSEGVPQ 323
Query: 623 IGIPFFGDQDYNVKIIKNLGVGSYIDYD 650
+ +P + + +++ G G + ++
Sbjct: 324 VSVPVIAEVWDSARLLHAAGAGVEVPWE 351
Score = 59.4 bits (144), Expect = 1e-09
Identities = 19/106 (17%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 5 PH----PKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDS 60
P P + + GG + + VP + +P + + +++ G G + ++
Sbjct: 293 PLSAIMPACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQ 352
Query: 61 VSTEVLYNLMKEVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWIE 106
E + + ++SY+ +R++A + +P D V IE
Sbjct: 353 AGVESVLAACARIRDDSSYVGNARRLAA-EMATLPTPAD-IVRLIE 396
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 92.5 bits (230), Expect = 2e-20
Identities = 30/210 (14%), Positives = 60/210 (28%), Gaps = 19/210 (9%)
Query: 280 QYPRPVFPNTINVGPTHIGDPKPLPEDLRTWIEGAEKGVIYFSLGSNMRSASLEESKRSA 339
Q V P + +G + +A+ A
Sbjct: 187 QASDAPQG--APVQYVPYNGSGAFPAWGA---ARTSARRVCICMGRMVLNATGPAPLLRA 241
Query: 340 ILTTFAKFPQYRVIW---KWEEEQLPGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQS 396
+ + L LP N + +P + L +L I GG +
Sbjct: 242 VAAATELPGV-EAVIAVPPEHRALLTDLPDNARIAESVPLNLFL--RTCELVICAGGSGT 298
Query: 397 LQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFD--SVSTEVLYNLMKEVLYNTS 454
+ +P + +P + DQ + + G G + + E + + VL +T
Sbjct: 299 AFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDTG 358
Query: 455 YMDTVKRISALSKTQM--MSPRDTAVWWIE 482
+ ++S ++ M V +E
Sbjct: 359 FAAAAIKLSD----EITAMPHPAALVRTLE 384
Score = 69.0 bits (169), Expect = 1e-12
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 566 RVIW---KWEEEQLPGLPSNVICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPM 622
+ L LP N + +P L +L I GG + A +P
Sbjct: 252 EAVIAVPPEHRALLTDLPDNARIAESVPLNLFLRT--CELVICAGGSGTAFTATRLGIPQ 309
Query: 623 IGIPFFGDQDYNVKIIKNLGVGSYIDYD 650
+ +P + DQ + + G G + +
Sbjct: 310 LVLPQYFDQFDYARNLAAAGAGICLPDE 337
Score = 52.1 bits (125), Expect = 3e-07
Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 12/110 (10%)
Query: 5 PH----PKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFD- 59
P +L I GG + + +P + +P + DQ + + G G + +
Sbjct: 279 PLNLFLRTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQ 338
Query: 60 -SVSTEVLYNLMKEVLYNTSYMDTVKRISALSKTQM--MSPRDTAVWWIE 106
E + + VL +T + ++S ++ M V +E
Sbjct: 339 AQSDHEQFTDSIATVLGDTGFAAAAIKLSD----EITAMPHPAALVRTLE 384
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 89.1 bits (221), Expect = 3e-19
Identities = 27/194 (13%), Positives = 57/194 (29%), Gaps = 10/194 (5%)
Query: 277 WLYQYPRPVFPNTINVGPTHIGDPKPLPEDLRTWI-EGAEKGVIYFSLGSNMRSASLEES 335
++ P + P L W+ + + + GS + S + +
Sbjct: 170 FIDICPPSLRPANAAPARMMRHVATSRQCPLEPWMYTRDTRQRVLVTSGSRVAKESYDRN 229
Query: 336 KR--SAILTTFAKFPQYRVI---WKWEEEQLPGLPSNVICRKWLPQHDLLAHPKIKLFIT 390
+ ++ +I E L W P + P L +
Sbjct: 230 FDFLRGLAKDLVRWDV-ELIVAAPDTVAEALRAEVPQARVG-WTPLDVVA--PTCDLLVH 285
Query: 391 QGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEVLYNLMKEVL 450
G S + VP + IP + + + + G + STE + + +E+
Sbjct: 286 HAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQ 345
Query: 451 YNTSYMDTVKRISA 464
+Y + +S
Sbjct: 346 AKDTYARRAQDLSR 359
Score = 62.5 bits (152), Expect = 2e-10
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 3/75 (4%)
Query: 574 EQLPGLPSNVICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFFGDQDY 633
E L W P + L + G S + VP + IP +
Sbjct: 257 EALRAEVPQARVG-WTPLDVVAPT--CDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEA 313
Query: 634 NVKIIKNLGVGSYID 648
+ + + G +
Sbjct: 314 PARRVADYGAAIALL 328
Score = 57.1 bits (138), Expect = 8e-09
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 5 PH----PKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDS 60
P P L + G S + VP + IP + + + + G +
Sbjct: 272 PLDVVAPTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGE 331
Query: 61 VSTEVLYNLMKEVLYNTSYMDTVKRISA 88
STE + + +E+ +Y + +S
Sbjct: 332 DSTEAIADSCQELQAKDTYARRAQDLSR 359
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 81.8 bits (202), Expect = 1e-16
Identities = 34/217 (15%), Positives = 69/217 (31%), Gaps = 21/217 (9%)
Query: 277 WLYQYPR----PVFPNTINVGPTHIGDPKPLPEDLRTWIEGAEKGVIYFSLGSNMRSASL 332
+ +P P + G L + L + + ++G+ A
Sbjct: 192 TIESFPPSLLLEAEPEGWFMRWVPYGGGAVLGDRLP---PVPARPEVAITMGTIELQAFG 248
Query: 333 EESKRSAILTTFAKFPQYRVIW---KWEEEQLPGLPSNVICRKWLPQHDLLAHPKIKLFI 389
+ I+ + + + L LP NV W P H LL +
Sbjct: 249 IGAVE-PIIAAAGEVDA-DFVLALGDLDISPLGTLPRNVRAVGWTPLHTLL--RTCTAVV 304
Query: 390 TQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIK--NLGIGTYMDFDSVSTEVLYNLMK 447
GG ++ ++ +P + P DQ + GIG D V ++L +
Sbjct: 305 HHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLL----R 360
Query: 448 EVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWIEYV 484
++ + S + + + +P +T +E +
Sbjct: 361 RLIGDESLRTAAREVREEM-VALPTPAETVRRIVERI 396
Score = 66.8 bits (163), Expect = 7e-12
Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 574 EQLPGLPSNVICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFFGDQDY 633
L LP NV W P LL + GG ++ A+ +P + P DQ
Sbjct: 276 SPLGTLPRNVRAVGWTPLHTLLRT--CTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQ 333
Query: 634 NVKIIKNLGVG 644
+ G
Sbjct: 334 HTAREAVSRRG 344
Score = 48.7 bits (116), Expect = 4e-06
Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 11/110 (10%)
Query: 5 PH----PKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIK--NLGIGTYMDF 58
P + GG ++ ++ +P + P DQ + GIG
Sbjct: 292 PLHTLLRTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTS 351
Query: 59 DSVSTEVLYNLMKEVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWIEYV 108
D V ++L + ++ + S + + + +P +T +E +
Sbjct: 352 DKVDADLL----RRLIGDESLRTAAREVREEM-VALPTPAETVRRIVERI 396
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 67.6 bits (166), Expect = 4e-12
Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 35/190 (18%)
Query: 283 RPVFPNTINVGPTHIGDPKPLPEDLRT---WIEGAEKG-VIYFSLGS--NMRSASLEE-- 334
+ +N+GP ++ P P+ + W++ + V+Y S G+ A +
Sbjct: 234 KSKLKTYLNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALS 293
Query: 335 -----SKRSAILTTFAKFPQYRVIWKWEEEQLPGLPSNVICR--------KWLPQHDLLA 381
S+ F IW ++ LP + + W PQ ++LA
Sbjct: 294 EALEASRVP--------F-----IWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQAEVLA 340
Query: 382 HPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKN-LGIGTYMDFDSVSTE 440
H + F+T G SL ESV VPLI PFFGDQ N +++++ L IG ++ +
Sbjct: 341 HEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKS 400
Query: 441 VLYNLMKEVL 450
L + ++L
Sbjct: 401 GLMSCFDQIL 410
Score = 51.9 bits (125), Expect = 5e-07
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 587 KWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFFGDQDYNVKIIKN-LGVG 644
W PQ ++LAH V F+ G SL E+V VP+I PFFGDQ N +++++ L +G
Sbjct: 331 PWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIG 389
Score = 42.2 bits (100), Expect = 4e-04
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 6 HPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKN-LGIGTYMDFDSVSTE 64
H + F+T G SL ESV VPLI PFFGDQ N +++++ L IG ++ +
Sbjct: 341 HEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKS 400
Query: 65 VLYNLMKEVL 74
L + ++L
Sbjct: 401 GLMSCFDQIL 410
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 66.1 bits (162), Expect = 1e-11
Identities = 47/195 (24%), Positives = 76/195 (38%), Gaps = 45/195 (23%)
Query: 283 RPVFPNTINVGPTHIGDPKPLPEDLRT---WIEGAEKG-VIYFSLGS--NMRSASLEE-- 334
F +NVGP ++ P+ D W++ E V+Y S GS L
Sbjct: 236 NSKFKLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALA 295
Query: 335 -----SKRSAILTTFAKFPQYRVIW---KWEEEQLP----------GLPSNVICRKWLPQ 376
F IW +E+LP G ++ W PQ
Sbjct: 296 ESLEECGFP--------F-----IWSFRGDPKEKLPKGFLERTKTKGK---IV--AWAPQ 337
Query: 377 HDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKN-LGIGTYMDFD 435
++L H + +F+T G S+ E + VP+I PFFGDQ N + ++ L IG +D
Sbjct: 338 VEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNG 397
Query: 436 SVSTEVLYNLMKEVL 450
++ E + ++ +
Sbjct: 398 VLTKESIKKALELTM 412
Score = 49.9 bits (120), Expect = 2e-06
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 587 KWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFFGDQDYNVKIIKN-LGVG 644
W PQ ++L H +V +F+ G S+ E + VPMI PFFGDQ N + ++ L +G
Sbjct: 333 AWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIG 391
Score = 41.0 bits (97), Expect = 0.001
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 6 HPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKN-LGIGTYMDFDSVSTE 64
H + +F+T G S+ E + VP+I PFFGDQ N + ++ L IG +D ++ E
Sbjct: 343 HSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKE 402
Query: 65 VLYNLMKEVL 74
+ ++ +
Sbjct: 403 SIKKALELTM 412
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 2e-10
Identities = 95/669 (14%), Positives = 191/669 (28%), Gaps = 194/669 (28%)
Query: 3 NTPHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGD---QDYN--VKIIKNLGIGTYMD 57
+ L S QE + + F + +Y + IK M
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQK-------FVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 58 FDSVSTEVLYNLMKEVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWIEYVLKSGGNLRH 117
+Y ++ LYN + Q+ + + V ++ LK L
Sbjct: 109 ------TRMYIEQRDRLYNDN--------------QVFAKYN--VSRLQPYLKLRQALLE 146
Query: 118 LQPDHWDMPWYQYFGLDVFL---------VLLSPVILVLYLDKEKPTFDLLLYEKIMHTG 168
L+P V + + + V K + D ++
Sbjct: 147 LRPAKN-----------VLIDGVLGSGKTWV---ALDVCLSYKVQCKMDFKIF------- 185
Query: 169 YLGILPKIGHPPSIAILTLPLPCVLDSSLGYMCNPAVVPENMLMGFTNKMTFWERLQNHL 228
+L +L +P V E + W +H
Sbjct: 186 WL-------------------------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH- 219
Query: 229 FIFMMHIYLNTHVMKGQNELARKYFGHTGEPTLQQMDRNKSLLMMTNSWLYQYPRPVFPN 288
+I L H ++ EL R L+ LL++ N
Sbjct: 220 ---SSNIKLRIHSIQ--AELRR---------LLKSKPYENCLLVLLNVQ----------- 254
Query: 289 TINVGPTHIGDPKPLPE-DL--RTWIEGAEKGVIYFSLGSNMRSASLEESKRSAILTT-- 343
+ K +L + + K V F + SL+ + LT
Sbjct: 255 ----------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT--LTPDE 302
Query: 344 ----FAKFPQYRVIWKWEEEQLP-----GLP----------SNVICR--KWL-PQHDLLA 381
K+ R + LP P + + W D L
Sbjct: 303 VKSLLLKYLDCRP------QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 382 HPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKI-IKNLGIG-TYMDFDSVST 439
I+ + L+ + F+ + + F + I L + + V
Sbjct: 357 T-IIESSLNV--LEPAEYRKMFD--RLSV--FPP---SAHIPTILLSLIWFDVIKSDVM- 405
Query: 440 EVLYNLMKEVLYNTSYMDTVKRISALS-KTQMMSPRDTAV--WWIE-YVLKSGGNLRHLQ 495
V+ L K L ++ I ++ + ++ + A+ ++ Y + + L
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 496 PDHWDMPWYQYFGLDCKYKYLYVNHTSTKQSYLEMG--GRTITRTAKQCYLQEVVESKRS 553
P + D +Y + G K T + +L+ + I + +
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW-------NASG 518
Query: 554 AILTTLDKFPQYR-VIWKWEEEQLPGLPSNVICRKWLPQ--QDLLAHPNVKLFIMQGGLQ 610
+IL TL + Y+ I + + L + ++ +LP+ ++L+ +++ L
Sbjct: 519 SILNTLQQLKFYKPYICD-NDPKYERLVNAIL--DFLPKIEENLICSKYTD--LLRIALM 573
Query: 611 SLQEAVYFE 619
+ EA++ E
Sbjct: 574 AEDEAIFEE 582
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 57.2 bits (139), Expect = 8e-09
Identities = 41/184 (22%), Positives = 62/184 (33%), Gaps = 39/184 (21%)
Query: 279 YQYPRPVFPNTINVGPTH--IGDPKPLPEDLR--TWIEGAEKG-VIYFSLGS--NMRSAS 331
Q P P VGP E+ W++ G V+Y S GS + +
Sbjct: 226 LQEPGLDKPPVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTL-TCE 284
Query: 332 --------LEESK-------RSAILTTFAKFPQYRVIWKWEEEQLP----------GLPS 366
L +S+ RS + + LP G
Sbjct: 285 QLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQ-TDPLTFLPPGFLERTKKRGF-- 341
Query: 367 NVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKII-KN 425
+ W PQ +LAHP F+T G S ESV +PLI P + +Q N ++ ++
Sbjct: 342 --VIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSED 399
Query: 426 LGIG 429
+
Sbjct: 400 IRAA 403
Score = 51.5 bits (124), Expect = 5e-07
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 584 ICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFFGDQDYNVKII-KNLG 642
+ W PQ +LAHP+ F+ G S E+V +P+I P + +Q N ++ +++
Sbjct: 342 VIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIR 401
Query: 643 VG 644
Sbjct: 402 AA 403
Score = 40.3 bits (95), Expect = 0.002
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 6 HPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKII-KNLGIG 53
HP F+T G S ESV +PLI P + +Q N ++ +++
Sbjct: 355 HPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAA 403
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 56.5 bits (137), Expect = 1e-08
Identities = 40/197 (20%), Positives = 68/197 (34%), Gaps = 51/197 (25%)
Query: 279 YQYPRPVFPNTINVGPTHIGDPKPLPEDLR-------TWIEGAEKG-VIYFSLGSNMRSA 330
P VGP +P P+ + W++ V++ GS S
Sbjct: 231 LYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSF 290
Query: 331 S----------LEESKRSAILTTFAKFPQYRVIW--KWEEEQLP------------GLPS 366
L+ S R +W E++ P G+
Sbjct: 291 GPSQIREIALGLKHSG-------------VRFLWSNSAEKKVFPEGFLEWMELEGKGM-- 335
Query: 367 NVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKII-KN 425
+ W PQ ++LAH I F++ G S+ ES++F VP++ P + +Q N + K
Sbjct: 336 -IC--GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE 392
Query: 426 LGIGTYMDFDSVSTEVL 442
G+G + D +
Sbjct: 393 WGVGLGLRVDYRKGSDV 409
Score = 49.1 bits (118), Expect = 3e-06
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 588 WLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFFGDQDYNVKII-KNLGVG 644
W PQ ++LAH + F+ G S+ E+++F VP++ P + +Q N + K GVG
Sbjct: 339 WAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVG 396
Score = 40.7 bits (96), Expect = 0.002
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 6 HPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKII-KNLGIGTYMDFDSVSTE 64
H I F++ G S+ ES++F VP++ P + +Q N + K G+G + D
Sbjct: 348 HKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGS 407
Query: 65 VL 66
+
Sbjct: 408 DV 409
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 56.2 bits (136), Expect = 2e-08
Identities = 49/206 (23%), Positives = 69/206 (33%), Gaps = 52/206 (25%)
Query: 283 RPVFPNTINVGPTHIGDPKPLPEDLRT------WIEGAE----------KGVIYFSLGS- 325
P+ +GP + W E E V+Y + GS
Sbjct: 246 SSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGST 305
Query: 326 -NMRSASLEE-------SKRSAILTTFAKFPQYRVIW-------KWEEEQLP-GLPSNVI 369
M L E K+S F +W + +
Sbjct: 306 TVMTPEQLLEFAWGLANCKKS--------F-----LWIIRPDLVIGGSVIFSSEFTNEIA 352
Query: 370 CR----KWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKN 425
R W PQ +L HP I F+T G S ES+ VP++ PFF DQ + + I N
Sbjct: 353 DRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICN 412
Query: 426 -LGIGTYMDFDSVSTEVLYNLMKEVL 450
IG +D + V E L L+ EV+
Sbjct: 413 EWEIGMEIDTN-VKREELAKLINEVI 437
Score = 51.2 bits (123), Expect = 8e-07
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 587 KWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFFGDQDYNVKIIKN-LGVGS 645
W PQ +L HP++ F+ G S E++ VPM+ PFF DQ + + I N +G
Sbjct: 359 SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGM 418
Query: 646 YIDYD 650
ID +
Sbjct: 419 EIDTN 423
Score = 40.8 bits (96), Expect = 0.001
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 6 HPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKN-LGIGTYMDFDSVSTE 64
HP I F+T G S ES+ VP++ PFF DQ + + I N IG +D + V E
Sbjct: 369 HPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTN-VKRE 427
Query: 65 VLYNLMKEVL 74
L L+ EV+
Sbjct: 428 ELAKLINEVI 437
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.007
Identities = 85/535 (15%), Positives = 154/535 (28%), Gaps = 170/535 (31%)
Query: 113 GNLRHLQPDHWDMP---WYQYFGL-DVFLVLLSPVILVLYLDKEKPTFDLLLYEKIMHTG 168
G+L H +P ++ L + F +L D E PT L K
Sbjct: 14 GSLEH----VLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE-PTTPAELVGK----- 63
Query: 169 YLGILPKIGHPPSIAILTLPLPCVLDSSLGYMCNPAVVPENMLMGFTNKMTFWERLQN-- 226
+LG + + P + VL+ L F N + L+
Sbjct: 64 FLGYVSSLVEPSKVG----QFDQVLNLCLTE--------------FEN--CY---LEGND 100
Query: 227 -HLFIFMMHIYLNTHVMKGQNELARKYF---GHTGEPT--------LQQMDRNKSLLMM- 273
H + +T ++K EL + Y P + + + L+
Sbjct: 101 IHALAAKLLQENDTTLVK-TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 274 ------TNSW------LYQYPRPVFPNTINV--------GPTHIGDPKPLPE--DLRTWI 311
T+ + LYQ + + I T + K + ++ W+
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 312 EGAEK--GVIYFSLGSNMRSASLEESKRS--AI-LTTFAKFPQYRVIWK---WEEEQL-P 362
E Y S + S I + A Y V K + +L
Sbjct: 220 ENPSNTPDKDYLL------SIPI-----SCPLIGVIQLA---HYVVTAKLLGFTPGELRS 265
Query: 363 GLPSNVICRK-------------WLPQHDLLAHPKIK-LFITQGGLQSLQESVYFEVPLI 408
L + W + I LF G++ E+ P
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSW-ESFFVSVRKAITVLFFI--GVRC-YEA----YPNT 317
Query: 409 GIPFFGDQDYNVKIIKNLGIG--TYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRIS-AL 465
+P +D ++N G + M S+S + V S++ K++ +L
Sbjct: 318 SLPPSILEDS----LEN-NEGVPSPM-L-SISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 466 --SKTQMM---SPRDTAVWWIEYVLKSGGNLRHLQ-PDHWD---MPWYQ---YFGLDCKY 513
++ P+ Y L LR + P D +P+ + F
Sbjct: 371 VNGAKNLVVSGPPQSL------YGLNL--TLRKAKAPSGLDQSRIPFSERKLKFS----N 418
Query: 514 KYLYVN---HTSTKQSYLEMGGRTITRTAKQCYLQEVVESKRSAILTTLDKFPQY 565
++L V H+ L A +++V++ S + + P Y
Sbjct: 419 RFLPVASPFHS----HLLV--------PASDLINKDLVKNNVSFNAKDI-QIPVY 460
Score = 31.6 bits (71), Expect = 1.1
Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 40/120 (33%)
Query: 3 NTPHPKIKLFITQGGLQSLQE---SVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFD 59
N P F + G + ++E ++ FE + G + KI K + +
Sbjct: 1667 NNPVNLTIHFGGEKG-KRIRENYSAMIFETIVDG------KLKTEKIFKEI--------N 1711
Query: 60 SVSTEVLYNLMKEVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWIEY----VLKSGGNL 115
ST + K +L T + TQ P T + E LKS G +
Sbjct: 1712 EHSTSYTFRSEKGLLSATQF------------TQ---PALTLM---EKAAFEDLKSKGLI 1753
Score = 29.6 bits (66), Expect = 4.8
Identities = 30/150 (20%), Positives = 45/150 (30%), Gaps = 54/150 (36%)
Query: 177 GHPPSIAILTLPL-----PCVLDSSLGYMCNPAVVPENMLMGFTN-KMTFWERLQNHLFI 230
G P S+ L L L P LD S +P F+ K+ F R L +
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSR--------IP------FSERKLKFSNRF---LPV 423
Query: 231 ---FMMH-IYLNTHVMKGQNELARK-------------YFGHTGEPTLQQMDRN--KSLL 271
F H L +L + Y G L+ + + + ++
Sbjct: 424 ASPF--HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS-DLRVLSGSISERIV 480
Query: 272 -MMTNSWLYQYPRPV-FPNTINVGPTHIGD 299
+ PV + T THI D
Sbjct: 481 DCIIRL-------PVKWETTTQFKATHILD 503
Score = 29.2 bits (65), Expect = 5.3
Identities = 27/161 (16%), Positives = 48/161 (29%), Gaps = 56/161 (34%)
Query: 344 FAKFPQYRVIW----KWEEEQLPGLPSNVICRKWLPQHDLLAHPKIK--LFITQGGLQSL 397
+ + +W ++ G I +P F + G + +
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTY-GFSILDIVIN---------NPVNLTIHFGGEKG-KRI 1684
Query: 398 QE---SVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEVLYNLMKEVLYNTS 454
+E ++ FE + G + KI K + + ST + K +L T
Sbjct: 1685 RENYSAMIFETIVDG------KLKTEKIFKEI--------NEHSTSYTFRSEKGLLSATQ 1730
Query: 455 YMDTVKRISALSKTQMMSPRDTAVWWIEY----VLKSGGNL 491
+ TQ P T + E LKS G +
Sbjct: 1731 F------------TQ---PALTLM---EKAAFEDLKSKGLI 1753
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB:
3hbn_A*
Length = 282
Score = 30.5 bits (67), Expect = 1.5
Identities = 10/88 (11%), Positives = 27/88 (30%), Gaps = 2/88 (2%)
Query: 569 WKWEEEQLPGLPSNVICRKWLPQQDLLAHPNVKLFIMQGGLQSLQEAVYFEVPMIGIPFF 628
+ ++ L +N+ L + I+ + EA+ + I +
Sbjct: 196 NLKKLQKFAKLHNNIRLFIDHENIAKLMN-ESNKLIISASS-LVNEALLLKANFKAICYV 253
Query: 629 GDQDYNVKIIKNLGVGSYIDYDSINNEN 656
+Q+ + G Y ++ +
Sbjct: 254 KNQESTATWLAKKGYEVEYKYLEHHHHH 281
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like
fold, endoplasmic reticulum, glycosyltransferase,
structural genomics; NMR {Saccharomyces cerevisiae} PDB:
2ks6_A
Length = 224
Score = 30.1 bits (67), Expect = 1.9
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 24/90 (26%)
Query: 602 LFIMQGGLQSLQEAVYFEVPMIGIP--------------FFGDQDYNV----------KI 637
L I G S+ +++ P+I F + Y
Sbjct: 135 LVISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSCAPTETGLIAG 194
Query: 638 IKNLGVGSYIDYDSINNENFYNLMKEILYN 667
++ + +N +F L+ E +Y+
Sbjct: 195 LRASQTEKLKPFPVSHNPSFERLLVETIYS 224
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2,
protein ST initiative, midwest center for structural
genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium
eligens}
Length = 278
Score = 29.1 bits (66), Expect = 4.4
Identities = 2/36 (5%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 631 QDYNVKIIK---NLGVGSYIDYDSINNENFYNLMKE 663
+ K + + + D ++ +++++
Sbjct: 18 RGMVFKAVPLTISTDNEEFCDDGQLDIHRMLDILEK 53
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural
genomics consortium, transferase; HET: TPP; 1.80A {Homo
sapiens} PDB: 1ig3_A* 2f17_A*
Length = 247
Score = 28.6 bits (63), Expect = 6.7
Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 14/134 (10%)
Query: 46 IIKNLGIGTYMDFDSVSTEVLYNLMK---EVLYNT--SYMDTVKRISALSKTQMMSPRDT 100
+ G DFDS+ EV E++ + D K + L K + +D
Sbjct: 67 FLPEFING---DFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQK--KIEEKDL 121
Query: 101 AVWWIEYVLKSGGNLRHLQPDHWDMPWYQYFGLDVFLVLLSPVILVLYLDKEKPTFDLLL 160
V I + G + + + ++++ L+ L K
Sbjct: 122 KVDVIVTLGGLAGRFDQIMASVNTLFQATHIT-PFPIIIIQEESLIYLLQPGKHRLH--- 177
Query: 161 YEKIMHTGYLGILP 174
+ M + G++P
Sbjct: 178 VDTGMEGDWCGLIP 191
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics,
PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A
{Ruminococcus gnavus}
Length = 298
Score = 28.4 bits (64), Expect = 8.7
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 631 QDYNVKIIK---NLGVGSYIDYDSINNENFYNLMKE 663
D + + + + D DS+ E + E
Sbjct: 38 ADGGFEHVALGIQIEDTQWTDDDSLKQEELLLKIAE 73
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase,
protein phosphatase, hydrolase, magne metal-binding;
1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Length = 187
Score = 27.7 bits (61), Expect = 9.4
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 627 FFGDQDYNVKIIKNLGVGSYIDYDSINNENFYNLMKE 663
FF D+ N+ + LGV + +N + ++
Sbjct: 142 FFDDERRNIVDVSKLGVTCIHIQNGMNLQTLSQGLET 178
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.437
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,596,389
Number of extensions: 644494
Number of successful extensions: 1280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1210
Number of HSP's successfully gapped: 73
Length of query: 668
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 568
Effective length of database: 3,909,693
Effective search space: 2220705624
Effective search space used: 2220705624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.4 bits)