BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16118
(1070 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WD5|A Chain A, Smc Hinge Heterodimer (Mouse)
Length = 233
Score = 239 bits (611), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 166/226 (73%), Gaps = 6/226 (2%)
Query: 412 DVGSSKNRVQELQKELEQVIEELGDAKTDKHEDTRRKKKQELVENFKKAYSG-VYDRMIN 470
+V +K R+ E+ KEL QV+E+LGDA+ D+ E +R+++K E++E+ K+ Y G VY R+I+
Sbjct: 2 EVEMAKRRIDEINKELNQVMEQLGDARIDRQESSRQQRKAEIMESIKRLYPGSVYGRLID 61
Query: 471 MCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTKPL 530
+C P K+Y +A+TKVLGK M+AI+VDSEKT R CIQY+K+ + +PETFLP+DYL+ KP
Sbjct: 62 LCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPT 121
Query: 531 KERLRNIRDPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRY 590
E+LR + K KL+ DV++Y+P IK+ + +A NALVC+ EDA ++A+ R+
Sbjct: 122 DEKLREL---KGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFG--GHQRH 176
Query: 591 DAVALDGTFYQKSGIMSGGSLDLARKAKRWDDKEMGNLKAQKEKLS 636
VALDGT +QKSG++SGG+ DL KA+RWD+K + LK +K +L+
Sbjct: 177 KTVALDGTLFQKSGVISGGASDLKAKARRWDEKAVDKLKEKKGRLT 222
>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|B Chain B, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|C Chain C, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|D Chain D, Sc Smc1hd:scc1-c Complex, Atpgs
Length = 430
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 43/200 (21%)
Query: 897 LQTIQAPNLRAM------EKLEHAKENLMKTNEEFENXXXXXXXXXXNFDRIKKERYDKF 950
L+T ++P L + + + A+ N E E F +IKK+R + F
Sbjct: 210 LKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELF 269
Query: 951 TRCFEHVSNEIDG---------------AGSESVLP-----RPF-LGPENPEEPLTYR-- 987
+ F++VS+ +D AG + L PF G + P R
Sbjct: 270 EKTFDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFK 329
Query: 988 --------------VSTTIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQ 1033
++ + Y P+PFFVLDE+DAALD TN+ ++A+YI LQ
Sbjct: 330 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQ 389
Query: 1034 TIVISLKEEFFSHADSLVGI 1053
IVISLK F +D+LVG+
Sbjct: 390 FIVISLKNTMFEKSDALVGV 409
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 8 IEVDNFKSYKGKFSIG-PLKKFTAVIGPNGSG 38
+E+ NFKSY+G +G FT++IGPNGSG
Sbjct: 7 LELSNFKSYRGVTKVGFGESNFTSIIGPNGSG 38
>pdb|3L51|B Chain B, Crystal Structure Of The Mouse Condensin Hinge Domain
Length = 166
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Query: 463 GVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPI 522
G+Y R+ ++ + ++Y++AI+ ++ IVVDS TA+ C+ +LK H + TF+ +
Sbjct: 18 GIYGRLGDL-GAIDEKYDIAISSCC-HALDYIVVDSIDTAQECVNFLKKHNIGIATFIGL 75
Query: 523 DYLQTKPLKERLRNIRDPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAY 582
D + ++ I+ P+N L+D++K + E+I++ FA + LV + A +VAY
Sbjct: 76 D--KXTVWAKKXSKIQTPENTPRLFDLVKVKNEEIRQAFYFALRDTLVANNLDQATRVAY 133
Query: 583 DIEPQHRYDAVALDGTFYQKSGIMSGG 609
+ R+ V L G ++SG SGG
Sbjct: 134 --QRDRRWRVVTLQGQIIEQSGTXSGG 158
>pdb|1GXL|A Chain A, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|B Chain B, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|C Chain C, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|D Chain D, Smc Hinge Domain From T. Maritima With Coiled Coil
Length = 213
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 84/155 (54%), Gaps = 11/155 (7%)
Query: 458 KKAYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPE 517
K+ + G+ D + N+ V ++Y++A++ +LG + IVV + TA+ +++LK ++
Sbjct: 38 KERFPGLVDVVSNLIE-VDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRV 96
Query: 518 TFLPIDYLQTKPLKERLRNIRDPKN-VKLLYDVLKYQPEDIKRVVLFATNNALVCETPED 576
T LP+D + R+ + + + V D++K+ P D++ + F N++V ET +D
Sbjct: 97 TILPLDLIDGSF--NRISGLENERGFVGYAVDLVKF-PSDLEVLGGFLFGNSVVVETLDD 153
Query: 577 AMKVAYDIEPQHRYDA--VALDGTFYQKSGIMSGG 609
A++ ++ ++R + LDG G ++GG
Sbjct: 154 AIR----MKKKYRLNTRIATLDGELISGRGAITGG 184
>pdb|1XEW|Y Chain Y, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases
Length = 172
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 33/141 (23%)
Query: 944 KERYDKFTRCFEHVS---NEIDGAGSESVLPRPFLGPENPEEPLT--------------- 985
KE+ + F R FE +S +EI S R L ENPE+P +
Sbjct: 2 KEKKNVFMRTFEAISRNFSEIFAKLSPGGSARLIL--ENPEDPFSGGLEIEAKPAGKDVK 59
Query: 986 ------------YRVSTTIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQ 1033
++ ++ PAPF++ DEIDA LD+ N+ +VA I +++S Q
Sbjct: 60 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKES-Q 118
Query: 1034 TIVISLKEEFFSHADSLVGIC 1054
IVI+L++ ++AD ++G+
Sbjct: 119 FIVITLRDVMMANADKIIGVS 139
>pdb|3NWC|A Chain A, Crystal Structure Of The Pyrococcus Furiosus Smc Protein
Hinge Domain
pdb|3NWC|B Chain B, Crystal Structure Of The Pyrococcus Furiosus Smc Protein
Hinge Domain
Length = 189
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 17/155 (10%)
Query: 458 KKAYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPE 517
+ G+Y + + + Y +AI LG + +VV+ E A I+YLK+H+L
Sbjct: 30 RSGIGGIYGTLAELIKVKDEAYALAIEVALGNRADNVVVEDELVAEKAIKYLKEHKLGRL 89
Query: 518 TFLPIDYLQTKPLKERLRNIRDPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDA 577
TFLP++ ++ K + ++ P DV++Y + I+ V FA + ++ + E+A
Sbjct: 90 TFLPLNKIKPKHVDS---SVGLPA-----VDVIEYD-QKIENAVKFALGDTVIVNSXEEA 140
Query: 578 MKVAYDIEPQ-HRYDAVALDGTFYQKSGIMSGGSL 611
P + V ++G Y++SG ++GG
Sbjct: 141 -------RPHIGKVRXVTIEGELYERSGAITGGHF 168
>pdb|1XEX|B Chain B, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases
Length = 172
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 33/141 (23%)
Query: 944 KERYDKFTRCFEHVS---NEIDGAGSESVLPRPFLGPENPEEPLT--------------- 985
KE+ + F R FE +S +EI S R L ENPE+P +
Sbjct: 2 KEKKNVFMRTFEAISRNFSEIFAKLSPGGSARLIL--ENPEDPFSGGLEIEAKPAGKDVK 59
Query: 986 ------------YRVSTTIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQ 1033
++ ++ PAPF++ D+IDA LD+ N+ +VA I +++S Q
Sbjct: 60 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDQIDAHLDDANVKRVADLIKESSKES-Q 118
Query: 1034 TIVISLKEEFFSHADSLVGIC 1054
IVI+L++ ++AD ++G+
Sbjct: 119 FIVITLRDVMMANADKIIGVS 139
>pdb|3KTA|B Chain B, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
pdb|3KTA|D Chain D, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
Length = 173
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 33/141 (23%)
Query: 944 KERYDKFTRCFEHVS---NEIDGAGSESVLPRPFLGPENPEEPLT--------------- 985
KE+ + F R FE +S +EI S R L ENPE+P +
Sbjct: 3 KEKKNVFXRTFEAISRNFSEIFAKLSPGGSARLIL--ENPEDPFSGGLEIEAKPAGKDVK 60
Query: 986 ------------YRVSTTIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQ 1033
++ ++ PAPF++ DEIDA LD+ N+ +VA I +++S Q
Sbjct: 61 RIEAXSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKES-Q 119
Query: 1034 TIVISLKEEFFSHADSLVGIC 1054
IVI+L++ ++AD ++G+
Sbjct: 120 FIVITLRDVXXANADKIIGVS 140
>pdb|4I99|A Chain A, Crystal Structure Of The Smchead Bound To The C-winged Helix
Domain Of Scpa
pdb|4I99|B Chain B, Crystal Structure Of The Smchead Bound To The C-winged Helix
Domain Of Scpa
Length = 354
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 995 HRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053
++ PAPF++ DEIDA LD+ N+ +VA I +++S Q IVI+L++ ++AD ++G+
Sbjct: 263 QKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKES-QFIVITLRDVXXANADKIIGV 320
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38
P ++ +E+ FKSY K + P K FTA++G NGSG
Sbjct: 2 PYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSG 38
>pdb|1GXJ|A Chain A, Smc Hinge Domain From T. Maritima WO COILED COIL
pdb|1GXJ|B Chain B, Smc Hinge Domain From T. Maritima WO COILED COIL
pdb|1GXK|A Chain A, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
pdb|1GXK|B Chain B, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
pdb|1GXK|C Chain C, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
pdb|1GXK|D Chain D, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
Length = 186
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 80/153 (52%), Gaps = 7/153 (4%)
Query: 458 KKAYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPE 517
K+ + G+ D + N+ V ++Y++A++ +LG + IVV + TA+ +++LK ++
Sbjct: 26 KERFPGLVDVVSNLIE-VDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRV 84
Query: 518 TFLPIDYLQTKPLKERLRNIRDPKN-VKLLYDVLKYQPEDIKRVVLFATNNALVCETPED 576
T LP+D + R+ + + + V D++K+ P D++ + F N++V ET +D
Sbjct: 85 TILPLDLIDGS--FNRISGLENERGFVGYAVDLVKF-PSDLEVLGGFLFGNSVVVETLDD 141
Query: 577 AMKVAYDIEPQHRYDAVALDGTFYQKSGIMSGG 609
A+++ R LDG G ++GG
Sbjct: 142 AIRMKKKYRLNTR--IATLDGELISGRGAITGG 172
>pdb|3L51|A Chain A, Crystal Structure Of The Mouse Condensin Hinge Domain
Length = 161
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 482 AITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTKPLK-ERLR---NI 537
A+ V G+ + +VVD+E TA+ ++ K T +P++ + + + E LR N+
Sbjct: 35 ALEVVAGERLYNVVVDTEVTAKKLLE--KGELKRRYTIIPLNKISARCIAPETLRVAQNL 92
Query: 538 RDPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALDG 597
P NV + ++ Y+PE +++ F VC ++A KVA+D R V L G
Sbjct: 93 VGPDNVHVALSLVDYKPE-LQKGXEFVFGTTFVCNNXDNAKKVAFDKRIXTR--TVTLGG 149
Query: 598 TFYQKSGIMSGG 609
+ G +SGG
Sbjct: 150 DVFDPHGTLSGG 161
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 996 RYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054
+ P PF VLDE++AALD N+ + A Y+ + D+ Q IVI+ ++ AD L G+
Sbjct: 347 KVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDT-QFIVITHRKGTMEEADVLYGVT 404
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 4 ILQYIEVDNFKSYKGKFSIGPLKKFTAVIGPNGSG 38
L+ ++V FKS+ + S+ +K TAV+GPNGSG
Sbjct: 2 FLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSG 36
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 24/166 (14%)
Query: 145 EQGALNRELAKV-DQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAK-KSLVEVRQAN 202
EQ LN L K+ D E + D++++ + K R ++ + A+ K K +V+ +QA
Sbjct: 1918 EQLHLNIGLKKLRDTEAQVKDLQVS------LAQKNRELDVKNEQANQKLKQMVQDQQAA 1971
Query: 203 EAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSH 262
E KD +L+ QL DVR ++ ++ +++ D+E K P++I+++E VS
Sbjct: 1972 EIKQKDARELQVQL-DVRNKEIAVQK---------VKAYADLE--KAEPAIIEAQEAVST 2019
Query: 263 IQKK----LASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAE 304
I+KK + S K V+ A EA + + + AD+RK+ E
Sbjct: 2020 IKKKHLDEIKSLPKPPTPVKLAMEAVCLMLGGKKLEWADIRKKIME 2065
>pdb|4HQF|A Chain A, Crystal Structure Of Plasmodium Falciparum Trap, I4 Form
Length = 281
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 14/88 (15%)
Query: 429 QVIEELGDAKTDKHEDTRRKKKQELVENFKKAYSGV-------YDRMINMCHPVHKRYNV 481
Q++ L D D +D+ ++ ++ K A G+ ++R + CHP + N+
Sbjct: 130 QLVVILTDGIPDSIQDSLKESRKLSDRGVKIAVFGIGQGINVAFNRFLVGCHPSDGKCNL 189
Query: 482 A-------ITKVLGKYMEAIVVDSEKTA 502
+ V+G +M+A+ V+ EKTA
Sbjct: 190 YADSAWENVKNVIGPFMKAVCVEVEKTA 217
>pdb|1XEW|X Chain X, Structural Biochemistry Of Atp-Driven Dimerization And
Dna Stimulated Activation Of Smc Atpases.
pdb|1XEX|A Chain A, Structural Biochemistry Of Atp-Driven Dimerization And
Dna Stimulated Activation Of Smc Atpases
Length = 182
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38
P ++ +E+ FKSY K + P K FTA++G NGSG
Sbjct: 2 PYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSG 38
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 999 PAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053
P+PF+VLDE+D+ LD+ N + + ++ + Q IVI+ + AD L G+
Sbjct: 241 PSPFYVLDEVDSPLDDYNAERFKRLLKENSKHT-QFIVITHNKIVMEAADLLHGV 294
>pdb|3KTA|A Chain A, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
pdb|3KTA|C Chain C, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
Length = 182
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38
P ++ +E+ FKSY K + P K FTA++G NGSG
Sbjct: 2 PYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSG 38
>pdb|4F1J|A Chain A, Crystal Structure Of The Mg2+ Loaded Vwa Domain Of
Plasmodium Falciparum Trap Protein
pdb|4F1J|B Chain B, Crystal Structure Of The Mg2+ Loaded Vwa Domain Of
Plasmodium Falciparum Trap Protein
pdb|4F1K|A Chain A, Crystal Structure Of The Mg2+ Free Vwa Domain Of
Plasmodium Falciparum Trap Protein
pdb|4F1K|B Chain B, Crystal Structure Of The Mg2+ Free Vwa Domain Of
Plasmodium Falciparum Trap Protein
Length = 203
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 14/88 (15%)
Query: 429 QVIEELGDAKTDKHEDTRRKKKQELVENFKKAYSGV-------YDRMINMCHPVHKRYNV 481
Q++ L D D +D+ ++ ++ K A G+ ++R + CHP + N+
Sbjct: 116 QLVVILTDGIPDSIQDSLKESRKLNDRGVKIAVFGIGQGINVAFNRFLVGCHPSDGKCNL 175
Query: 482 A-------ITKVLGKYMEAIVVDSEKTA 502
+ V+G +M+A+ V+ EKTA
Sbjct: 176 YADSAWENVKNVIGPFMKAVCVEVEKTA 203
>pdb|2WD5|B Chain B, Smc Hinge Heterodimer (Mouse)
Length = 213
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 72/178 (40%), Gaps = 21/178 (11%)
Query: 443 EDTRRKKKQELVENFKKAYSGVYDRMINM-CHPVHKRYNVAITKVLGKYMEAIVVDS-EK 500
E RRK + V+N Y G+ M N C P + + G + +VDS E
Sbjct: 34 EHFRRKGINQHVQN---GYHGIV--MNNFECEPA---FYTCVEVTAGNRLFYHIVDSDEV 85
Query: 501 TARLCIQYLKDHQLDPETFLPIDYLQTKPLKERLRNIRDPKNVKLLYDVLKYQPEDIKRV 560
+ ++ +++ K + TFLP++ L + N P KL +Y P +
Sbjct: 86 STKILMEFNKMNLPGEVTFLPLNKLDVRDTAYPETNDAIPMISKL-----RYNPR-FDKA 139
Query: 561 VLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALDGTFYQKSGIMSGGSLDLARKAK 618
L+C + M+V+ + D + L+G G ++GG D RK++
Sbjct: 140 FKHVFGKTLICRS----MEVSTQLARAFTMDCITLEGDQVSHRGALTGGYYD-TRKSR 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,693,620
Number of Sequences: 62578
Number of extensions: 1027397
Number of successful extensions: 3312
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 3129
Number of HSP's gapped (non-prelim): 212
length of query: 1070
length of database: 14,973,337
effective HSP length: 109
effective length of query: 961
effective length of database: 8,152,335
effective search space: 7834393935
effective search space used: 7834393935
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)