Query psy16118
Match_columns 1070
No_of_seqs 326 out of 2764
Neff 10.9
Searched_HMMs 46136
Date Fri Aug 16 21:21:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16118.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16118hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0018|consensus 100.0 1.3E-89 2.9E-94 750.1 103.7 956 2-1065 1-1136(1141)
2 COG1196 Smc Chromosome segrega 100.0 6.4E-84 1.4E-88 796.5 115.4 941 39-1067 165-1155(1163)
3 KOG0996|consensus 100.0 2E-74 4.3E-79 635.2 108.2 662 385-1062 537-1278(1293)
4 TIGR02169 SMC_prok_A chromosom 100.0 3.9E-69 8.4E-74 693.3 120.1 590 460-1065 519-1161(1164)
5 KOG0964|consensus 100.0 3E-69 6.6E-74 580.2 98.7 936 39-1064 163-1182(1200)
6 KOG0933|consensus 100.0 1.8E-63 3.9E-68 538.8 95.4 921 39-1064 169-1167(1174)
7 TIGR02168 SMC_prok_B chromosom 100.0 1.2E-54 2.5E-59 562.1 117.4 595 461-1066 518-1177(1179)
8 KOG0250|consensus 100.0 1.8E-43 3.8E-48 393.2 89.9 231 364-605 396-637 (1074)
9 PRK02224 chromosome segregatio 100.0 4.3E-31 9.3E-36 325.2 86.9 67 999-1065 811-879 (880)
10 KOG0979|consensus 100.0 2.6E-30 5.7E-35 283.8 77.7 155 885-1040 839-1026(1072)
11 PRK03918 chromosome segregatio 100.0 1.6E-27 3.6E-32 294.8 86.1 70 995-1065 808-877 (880)
12 TIGR00606 rad50 rad50. This fa 100.0 8.2E-25 1.8E-29 275.4 94.4 74 992-1065 1216-1300(1311)
13 COG0419 SbcC ATPase involved i 100.0 3.9E-24 8.5E-29 260.2 87.8 155 908-1064 718-905 (908)
14 PRK01156 chromosome segregatio 100.0 1E-23 2.2E-28 259.2 88.2 70 995-1065 821-893 (895)
15 TIGR02168 SMC_prok_B chromosom 100.0 1E-21 2.3E-26 255.0 91.4 116 56-171 175-294 (1179)
16 PRK10246 exonuclease subunit S 100.0 8.7E-21 1.9E-25 232.3 92.5 69 999-1067 975-1044(1047)
17 PRK04863 mukB cell division pr 100.0 3.9E-19 8.4E-24 217.8 100.0 56 454-511 675-730 (1486)
18 TIGR00618 sbcc exonuclease Sbc 99.9 5.6E-18 1.2E-22 210.0 97.4 64 999-1063 978-1041(1042)
19 TIGR02169 SMC_prok_A chromosom 99.9 1.3E-17 2.8E-22 215.8 99.0 116 43-161 167-282 (1164)
20 COG1196 Smc Chromosome segrega 99.9 2.8E-16 6.1E-21 196.0 92.7 192 35-226 165-363 (1163)
21 KOG0962|consensus 99.9 1.8E-14 3.9E-19 167.2 89.7 76 992-1067 1198-1286(1294)
22 KOG0996|consensus 99.9 1.9E-13 4.2E-18 154.2 82.9 188 39-226 264-459 (1293)
23 TIGR02680 conserved hypothetic 99.8 4.2E-12 9.2E-17 159.4 95.0 39 999-1040 1277-1315(1353)
24 KOG0161|consensus 99.8 5.6E-12 1.2E-16 155.2 93.0 318 98-437 817-1144(1930)
25 PF13514 AAA_27: AAA domain 99.8 2.1E-12 4.5E-17 161.6 90.4 53 998-1052 1051-1103(1111)
26 KOG0161|consensus 99.8 6E-10 1.3E-14 137.8 96.2 48 763-810 1494-1541(1930)
27 COG4717 Uncharacterized conser 99.8 8.8E-11 1.9E-15 129.2 74.8 152 885-1045 792-971 (984)
28 TIGR00606 rad50 rad50. This fa 99.7 2.8E-10 6.1E-15 144.7 81.8 105 624-729 710-815 (1311)
29 KOG0964|consensus 99.7 2.9E-09 6.2E-14 118.5 81.2 36 3-38 1-37 (1200)
30 COG0497 RecN ATPase involved i 99.7 4.5E-14 9.6E-19 152.3 34.6 208 836-1055 261-508 (557)
31 PRK10869 recombination and rep 99.7 6.2E-14 1.3E-18 158.9 36.7 170 885-1057 300-509 (553)
32 PF02463 SMC_N: RecF/RecN/SMC 99.7 3.7E-17 8E-22 165.9 6.6 70 992-1062 151-220 (220)
33 KOG0250|consensus 99.6 2.6E-08 5.6E-13 114.1 74.1 162 885-1049 868-1062(1074)
34 PRK02224 chromosome segregatio 99.6 5.3E-08 1.2E-12 121.0 81.0 34 3-38 1-35 (880)
35 TIGR00634 recN DNA repair prot 99.6 4.1E-13 8.8E-18 154.6 32.6 65 999-1064 462-529 (563)
36 PHA02562 46 endonuclease subun 99.6 7.3E-12 1.6E-16 147.3 40.4 66 998-1066 495-561 (562)
37 KOG0933|consensus 99.6 1.1E-07 2.5E-12 106.7 86.3 31 3-33 1-32 (1174)
38 PF12128 DUF3584: Protein of u 99.6 5.4E-07 1.2E-11 113.6 90.1 51 998-1052 1143-1198(1201)
39 PHA02562 46 endonuclease subun 99.6 5.3E-12 1.1E-16 148.5 34.6 36 2-38 1-39 (562)
40 KOG4674|consensus 99.4 5.6E-06 1.2E-10 101.5 92.3 47 260-306 907-953 (1822)
41 KOG0018|consensus 99.4 3.2E-06 7E-11 96.5 82.8 216 8-228 122-352 (1141)
42 PF06470 SMC_hinge: SMC protei 99.3 1.9E-12 4.2E-17 116.7 7.8 119 462-581 2-120 (120)
43 PRK04863 mukB cell division pr 99.3 1.9E-05 4.2E-10 99.0 90.9 36 1-38 1-39 (1486)
44 PRK04778 septation ring format 99.3 1.5E-06 3.3E-11 100.3 54.6 75 885-965 452-527 (569)
45 TIGR03185 DNA_S_dndD DNA sulfu 99.3 1.9E-07 4.2E-12 110.2 46.6 71 992-1066 566-648 (650)
46 PF10174 Cast: RIM-binding pro 99.2 2.1E-05 4.7E-10 91.0 81.0 28 41-68 9-36 (775)
47 PRK03918 chromosome segregatio 99.2 5.3E-05 1.1E-09 94.8 83.0 34 3-38 1-35 (880)
48 KOG4674|consensus 99.2 6.5E-05 1.4E-09 92.6 94.3 57 649-705 660-723 (1822)
49 PF01576 Myosin_tail_1: Myosin 99.1 9.1E-12 2E-16 148.5 0.0 73 343-415 330-402 (859)
50 PF01576 Myosin_tail_1: Myosin 99.1 9.1E-12 2E-16 148.5 -0.3 112 323-434 394-505 (859)
51 PF12128 DUF3584: Protein of u 99.1 0.00019 4E-09 91.1 79.9 26 10-38 3-29 (1201)
52 TIGR03185 DNA_S_dndD DNA sulfu 99.0 2E-05 4.3E-10 93.4 47.7 35 3-38 1-40 (650)
53 cd03278 ABC_SMC_barmotin Barmo 98.9 1.8E-09 3.9E-14 105.9 6.8 65 997-1062 133-197 (197)
54 cd03273 ABC_SMC2_euk Eukaryoti 98.9 3.1E-09 6.8E-14 109.8 7.1 65 997-1063 186-250 (251)
55 PF10174 Cast: RIM-binding pro 98.8 0.00075 1.6E-08 78.6 77.4 101 336-436 247-347 (775)
56 PF07888 CALCOCO1: Calcium bin 98.8 0.0004 8.7E-09 76.0 43.1 18 415-432 435-452 (546)
57 cd03275 ABC_SMC1_euk Eukaryoti 98.7 2.1E-08 4.6E-13 103.0 7.4 69 997-1065 175-244 (247)
58 PF00261 Tropomyosin: Tropomyo 98.7 6.8E-05 1.5E-09 75.8 31.6 102 121-222 6-107 (237)
59 PRK01156 chromosome segregatio 98.7 0.004 8.7E-08 77.8 76.7 34 3-38 1-35 (895)
60 cd03239 ABC_SMC_head The struc 98.6 9E-08 1.9E-12 92.0 6.4 66 995-1061 112-177 (178)
61 KOG0977|consensus 98.6 0.001 2.3E-08 72.8 37.3 44 39-82 32-75 (546)
62 PF00038 Filament: Intermediat 98.5 0.0025 5.4E-08 68.5 39.9 137 48-187 3-139 (312)
63 PF00038 Filament: Intermediat 98.5 0.0024 5.1E-08 68.7 38.8 40 152-191 55-94 (312)
64 KOG0962|consensus 98.5 0.01 2.2E-07 71.6 75.5 37 2-38 1-39 (1294)
65 cd03241 ABC_RecN RecN ATPase i 98.4 4.4E-07 9.6E-12 94.9 6.5 66 998-1064 191-256 (276)
66 PRK04778 septation ring format 98.4 0.012 2.6E-07 68.4 45.8 20 177-196 254-273 (569)
67 PRK10869 recombination and rep 98.4 6.3E-05 1.4E-09 86.2 23.9 32 5-38 2-34 (553)
68 TIGR00634 recN DNA repair prot 98.3 8.6E-05 1.9E-09 86.2 23.7 32 5-38 2-34 (563)
69 cd03274 ABC_SMC4_euk Eukaryoti 98.3 1.4E-06 3.1E-11 86.6 6.7 60 997-1057 147-206 (212)
70 cd03272 ABC_SMC3_euk Eukaryoti 98.3 1.2E-06 2.7E-11 90.4 6.2 65 997-1063 178-242 (243)
71 COG3096 MukB Uncharacterized p 98.2 0.016 3.4E-07 64.1 85.7 34 3-38 5-39 (1480)
72 KOG0977|consensus 98.2 0.0049 1.1E-07 67.8 31.1 38 155-192 96-133 (546)
73 cd03227 ABC_Class2 ABC-type Cl 98.1 3.4E-06 7.3E-11 80.3 5.9 64 998-1061 98-161 (162)
74 cd03240 ABC_Rad50 The catalyti 98.1 4.1E-06 8.9E-11 82.9 6.1 67 996-1062 136-204 (204)
75 PF05701 WEMBL: Weak chloropla 98.1 0.038 8.2E-07 63.3 50.1 10 13-22 4-13 (522)
76 PRK11637 AmiB activator; Provi 98.0 0.0074 1.6E-07 67.8 31.0 13 1032-1044 360-372 (428)
77 PF15070 GOLGA2L5: Putative go 98.0 0.039 8.4E-07 63.5 36.4 20 415-434 290-309 (617)
78 PF06160 EzrA: Septation ring 98.0 0.064 1.4E-06 62.2 48.6 56 103-158 95-150 (560)
79 PF13166 AAA_13: AAA domain 98.0 0.0028 6.1E-08 77.3 27.7 52 999-1051 527-581 (712)
80 cd03238 ABC_UvrA The excision 97.9 1.3E-05 2.9E-10 76.4 6.0 73 988-1061 88-168 (176)
81 cd00267 ABC_ATPase ABC (ATP-bi 97.9 1.4E-05 3E-10 76.0 5.7 67 988-1054 81-154 (157)
82 KOG0976|consensus 97.9 0.07 1.5E-06 59.8 48.7 70 340-409 329-398 (1265)
83 PF05557 MAD: Mitotic checkpoi 97.9 0.0001 2.2E-09 88.4 14.0 85 885-976 570-659 (722)
84 COG1340 Uncharacterized archae 97.9 0.034 7.4E-07 55.9 35.7 11 182-192 65-75 (294)
85 cd03237 ABC_RNaseL_inhibitor_d 97.9 1.7E-05 3.7E-10 81.1 6.3 76 988-1064 116-199 (246)
86 cd03230 ABC_DR_subfamily_A Thi 97.9 1.8E-05 3.9E-10 76.5 5.9 67 988-1054 96-169 (173)
87 cd03246 ABCC_Protease_Secretio 97.9 2.2E-05 4.7E-10 75.9 6.3 67 988-1054 97-169 (173)
88 KOG4643|consensus 97.9 0.1 2.2E-06 60.6 45.8 26 43-68 178-203 (1195)
89 PRK11637 AmiB activator; Provi 97.9 0.018 3.8E-07 64.7 30.1 12 624-635 48-59 (428)
90 cd03216 ABC_Carb_Monos_I This 97.9 2.2E-05 4.7E-10 74.8 5.9 67 988-1054 83-156 (163)
91 PF13555 AAA_29: P-loop contai 97.9 9.3E-06 2E-10 60.4 2.5 31 6-38 2-35 (62)
92 cd03229 ABC_Class3 This class 97.8 2.4E-05 5.2E-10 76.0 5.6 66 988-1053 101-174 (178)
93 cd03228 ABCC_MRP_Like The MRP 97.8 3.5E-05 7.6E-10 74.3 6.7 66 988-1054 97-168 (171)
94 cd03232 ABC_PDR_domain2 The pl 97.8 2.7E-05 5.9E-10 76.7 6.0 67 988-1054 109-183 (192)
95 cd03214 ABC_Iron-Siderophores_ 97.8 2.5E-05 5.4E-10 76.1 5.6 67 988-1054 98-172 (180)
96 KOG0946|consensus 97.8 0.084 1.8E-06 59.7 32.7 32 267-298 801-832 (970)
97 COG1340 Uncharacterized archae 97.8 0.048 1E-06 54.9 33.7 38 654-691 38-75 (294)
98 cd03225 ABC_cobalt_CbiO_domain 97.8 2.7E-05 5.9E-10 78.4 5.9 66 988-1053 135-207 (211)
99 cd03248 ABCC_TAP TAP, the Tran 97.8 3.2E-05 6.9E-10 78.8 6.3 66 988-1054 151-222 (226)
100 COG4637 Predicted ATPase [Gene 97.8 0.00016 3.5E-09 72.0 10.2 80 970-1050 250-340 (373)
101 cd03223 ABCD_peroxisomal_ALDP 97.8 4.3E-05 9.4E-10 73.0 6.3 64 988-1054 92-161 (166)
102 cd03269 ABC_putative_ATPase Th 97.8 3E-05 6.6E-10 77.9 5.5 67 988-1054 129-202 (210)
103 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.8 3.3E-05 7.2E-10 78.2 5.8 66 988-1053 141-213 (218)
104 PRK13540 cytochrome c biogenes 97.8 2.9E-05 6.4E-10 77.2 5.2 64 988-1051 128-197 (200)
105 TIGR02673 FtsE cell division A 97.8 3.7E-05 8E-10 77.7 6.0 66 988-1053 138-210 (214)
106 cd03245 ABCC_bacteriocin_expor 97.8 4E-05 8.6E-10 77.8 6.2 66 988-1054 141-212 (220)
107 cd03235 ABC_Metallic_Cations A 97.7 3.8E-05 8.2E-10 77.5 5.7 66 988-1053 133-205 (213)
108 COG4372 Uncharacterized protei 97.7 0.069 1.5E-06 54.6 29.8 30 54-83 65-94 (499)
109 TIGR02211 LolD_lipo_ex lipopro 97.7 3.9E-05 8.5E-10 77.9 5.8 67 988-1054 142-215 (221)
110 cd03259 ABC_Carb_Solutes_like 97.7 3.7E-05 8.1E-10 77.5 5.5 67 988-1054 131-205 (213)
111 cd03268 ABC_BcrA_bacitracin_re 97.7 4.1E-05 8.8E-10 76.9 5.7 67 988-1054 127-200 (208)
112 TIGR03864 PQQ_ABC_ATP ABC tran 97.7 3.7E-05 8E-10 78.9 5.5 67 988-1054 133-206 (236)
113 TIGR02324 CP_lyasePhnL phospho 97.7 3.8E-05 8.3E-10 78.1 5.6 68 988-1055 150-224 (224)
114 COG1136 SalX ABC-type antimicr 97.7 4.6E-05 9.9E-10 74.3 5.7 67 988-1054 143-216 (226)
115 TIGR00960 3a0501s02 Type II (G 97.7 4.8E-05 1.1E-09 76.9 6.1 66 988-1053 139-211 (216)
116 cd03213 ABCG_EPDR ABCG transpo 97.7 5.4E-05 1.2E-09 74.7 6.1 67 988-1054 112-186 (194)
117 KOG1029|consensus 97.7 0.15 3.1E-06 57.3 34.2 32 1030-1068 1073-1104(1118)
118 COG0396 sufC Cysteine desulfur 97.7 5.6E-05 1.2E-09 71.9 5.7 59 992-1051 156-216 (251)
119 TIGR03608 L_ocin_972_ABC putat 97.7 4.5E-05 9.8E-10 76.5 5.6 64 988-1051 135-204 (206)
120 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.7 5.3E-05 1.1E-09 78.0 6.2 66 988-1054 140-211 (238)
121 cd03264 ABC_drug_resistance_li 97.7 5E-05 1.1E-09 76.5 5.8 66 988-1054 131-203 (211)
122 cd03252 ABCC_Hemolysin The ABC 97.7 5.5E-05 1.2E-09 77.8 6.3 66 988-1054 139-210 (237)
123 PRK10247 putative ABC transpor 97.7 4.9E-05 1.1E-09 77.2 5.7 68 988-1055 138-212 (225)
124 COG4988 CydD ABC-type transpor 97.7 5.1E-05 1.1E-09 83.0 6.0 66 988-1054 457-528 (559)
125 cd03260 ABC_PstB_phosphate_tra 97.7 5.6E-05 1.2E-09 77.1 6.1 67 988-1055 142-215 (227)
126 cd03263 ABC_subfamily_A The AB 97.7 5.4E-05 1.2E-09 76.8 5.8 66 988-1054 134-206 (220)
127 cd03217 ABC_FeS_Assembly ABC-t 97.7 5.8E-05 1.2E-09 74.9 5.8 67 988-1054 105-179 (200)
128 KOG1029|consensus 97.7 0.16 3.5E-06 57.0 36.4 8 565-572 714-721 (1118)
129 cd03257 ABC_NikE_OppD_transpor 97.7 5E-05 1.1E-09 77.7 5.4 67 988-1054 146-220 (228)
130 cd03270 ABC_UvrA_I The excisio 97.7 7.7E-05 1.7E-09 75.4 6.7 67 988-1054 138-212 (226)
131 cd03262 ABC_HisP_GlnQ_permease 97.7 6.4E-05 1.4E-09 75.9 6.0 67 988-1054 136-209 (213)
132 PRK14245 phosphate ABC transpo 97.7 6.2E-05 1.4E-09 78.0 6.1 67 988-1055 147-220 (250)
133 cd03293 ABC_NrtD_SsuB_transpor 97.7 5.1E-05 1.1E-09 76.9 5.3 67 988-1054 132-206 (220)
134 cd03226 ABC_cobalt_CbiO_domain 97.7 6.3E-05 1.4E-09 75.2 5.8 67 988-1054 127-200 (205)
135 PRK11614 livF leucine/isoleuci 97.7 5.8E-05 1.2E-09 77.6 5.7 67 988-1054 138-211 (237)
136 cd03244 ABCC_MRP_domain2 Domai 97.7 6.9E-05 1.5E-09 76.1 6.1 66 988-1054 140-211 (221)
137 TIGR03740 galliderm_ABC gallid 97.7 6.3E-05 1.4E-09 76.4 5.8 67 988-1054 125-198 (223)
138 cd03215 ABC_Carb_Monos_II This 97.7 7.4E-05 1.6E-09 72.9 6.1 66 988-1053 105-177 (182)
139 cd03254 ABCC_Glucan_exporter_l 97.7 7.5E-05 1.6E-09 76.4 6.4 66 988-1054 140-211 (229)
140 cd03247 ABCC_cytochrome_bd The 97.7 8E-05 1.7E-09 72.4 6.2 66 988-1054 99-170 (178)
141 KOG0994|consensus 97.7 0.24 5.2E-06 58.2 60.4 13 887-899 1688-1700(1758)
142 cd03251 ABCC_MsbA MsbA is an e 97.6 7.7E-05 1.7E-09 76.6 6.4 66 988-1054 139-210 (234)
143 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.6 6.8E-05 1.5E-09 75.9 5.9 67 988-1054 143-216 (224)
144 PRK10908 cell division protein 97.6 7.4E-05 1.6E-09 75.8 6.2 67 988-1054 138-211 (222)
145 cd03292 ABC_FtsE_transporter F 97.6 7.3E-05 1.6E-09 75.5 6.0 66 988-1053 137-209 (214)
146 TIGR01184 ntrCD nitrate transp 97.6 6.3E-05 1.4E-09 76.6 5.5 68 988-1055 115-190 (230)
147 PF09726 Macoilin: Transmembra 97.6 0.076 1.6E-06 62.2 30.9 34 398-431 623-656 (697)
148 TIGR01978 sufC FeS assembly AT 97.6 6.9E-05 1.5E-09 77.5 5.8 67 988-1054 145-219 (243)
149 PF05667 DUF812: Protein of un 97.6 0.22 4.7E-06 57.2 35.5 29 200-228 394-422 (594)
150 PRK14269 phosphate ABC transpo 97.6 7.7E-05 1.7E-09 77.0 6.1 67 988-1055 143-216 (246)
151 TIGR03771 anch_rpt_ABC anchore 97.6 7.2E-05 1.6E-09 75.8 5.7 66 988-1053 114-186 (223)
152 cd03369 ABCC_NFT1 Domain 2 of 97.6 9.1E-05 2E-09 74.2 6.3 67 988-1055 126-198 (207)
153 PRK10584 putative ABC transpor 97.6 7E-05 1.5E-09 76.5 5.5 66 988-1053 147-219 (228)
154 PRK14241 phosphate transporter 97.6 7.7E-05 1.7E-09 77.7 5.9 66 988-1054 149-221 (258)
155 cd03224 ABC_TM1139_LivF_branch 97.6 7.5E-05 1.6E-09 76.0 5.6 67 988-1054 133-206 (222)
156 PRK10619 histidine/lysine/argi 97.6 7.8E-05 1.7E-09 77.6 5.8 67 988-1054 153-226 (257)
157 cd03218 ABC_YhbG The ABC trans 97.6 8.3E-05 1.8E-09 76.2 5.9 67 988-1054 134-207 (232)
158 cd03222 ABC_RNaseL_inhibitor T 97.6 0.00013 2.9E-09 69.7 6.8 75 988-1063 72-154 (177)
159 PF13166 AAA_13: AAA domain 97.6 0.36 7.9E-06 59.0 44.8 27 12-38 1-28 (712)
160 cd03253 ABCC_ATM1_transporter 97.6 9.9E-05 2.1E-09 75.9 6.3 66 988-1054 138-209 (236)
161 PRK14247 phosphate ABC transpo 97.6 8.8E-05 1.9E-09 76.9 6.0 66 988-1054 147-219 (250)
162 PRK14242 phosphate transporter 97.6 9.2E-05 2E-09 77.0 6.0 67 988-1055 150-223 (253)
163 cd03266 ABC_NatA_sodium_export 97.6 9E-05 1.9E-09 75.1 5.8 67 988-1054 137-210 (218)
164 PF15070 GOLGA2L5: Putative go 97.6 0.26 5.7E-06 56.9 39.8 17 1011-1027 569-585 (617)
165 PRK14262 phosphate ABC transpo 97.6 0.0001 2.2E-09 76.5 6.2 67 988-1055 147-220 (250)
166 PRK14268 phosphate ABC transpo 97.6 0.0001 2.2E-09 76.8 6.1 66 988-1054 155-227 (258)
167 cd03261 ABC_Org_Solvent_Resist 97.6 9.4E-05 2E-09 75.9 5.7 67 988-1054 137-211 (235)
168 cd03256 ABC_PhnC_transporter A 97.6 9.1E-05 2E-09 76.5 5.6 67 988-1054 145-219 (241)
169 cd03298 ABC_ThiQ_thiamine_tran 97.6 9.5E-05 2.1E-09 74.4 5.6 67 988-1054 129-203 (211)
170 PRK11248 tauB taurine transpor 97.6 8.9E-05 1.9E-09 76.7 5.4 67 988-1054 129-203 (255)
171 TIGR00972 3a0107s01c2 phosphat 97.6 0.0001 2.2E-09 76.2 5.9 66 988-1054 145-217 (247)
172 TIGR02203 MsbA_lipidA lipid A 97.6 7.9E-05 1.7E-09 88.2 5.7 66 988-1054 470-541 (571)
173 TIGR01277 thiQ thiamine ABC tr 97.6 0.0001 2.2E-09 74.2 5.7 67 988-1054 129-203 (213)
174 PRK14259 phosphate ABC transpo 97.6 0.00011 2.3E-09 76.9 6.0 66 988-1054 155-227 (269)
175 PRK11174 cysteine/glutathione 97.6 9.3E-05 2E-09 87.7 6.2 66 988-1054 486-557 (588)
176 PF09726 Macoilin: Transmembra 97.6 0.083 1.8E-06 61.9 29.7 100 335-434 546-645 (697)
177 cd03258 ABC_MetN_methionine_tr 97.6 8.9E-05 1.9E-09 76.0 5.3 67 988-1054 141-215 (233)
178 PRK13657 cyclic beta-1,2-gluca 97.6 0.0001 2.2E-09 87.2 6.5 66 988-1054 472-543 (588)
179 PRK14273 phosphate ABC transpo 97.6 0.00011 2.3E-09 76.5 5.9 65 988-1053 151-222 (254)
180 cd03297 ABC_ModC_molybdenum_tr 97.6 9.7E-05 2.1E-09 74.5 5.4 67 988-1054 132-206 (214)
181 PRK09493 glnQ glutamine ABC tr 97.6 0.0001 2.3E-09 75.8 5.7 67 988-1054 137-210 (240)
182 cd03267 ABC_NatA_like Similar 97.6 0.00011 2.4E-09 75.2 5.9 67 988-1054 154-228 (236)
183 TIGR02315 ABC_phnC phosphonate 97.6 0.0001 2.2E-09 76.2 5.6 67 988-1054 146-220 (243)
184 PRK11629 lolD lipoprotein tran 97.5 0.00011 2.4E-09 75.2 5.8 64 988-1051 146-216 (233)
185 cd03219 ABC_Mj1267_LivG_branch 97.5 0.00011 2.4E-09 75.5 5.8 67 988-1054 144-217 (236)
186 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 0.00015 3.2E-09 67.3 6.1 63 988-1053 71-140 (144)
187 COG4913 Uncharacterized protei 97.5 0.24 5.1E-06 55.4 69.5 44 1002-1048 1024-1067(1104)
188 COG0497 RecN ATPase involved i 97.5 0.039 8.5E-07 61.4 25.4 32 5-38 2-34 (557)
189 PRK14235 phosphate transporter 97.5 0.00011 2.4E-09 76.7 5.8 66 988-1054 164-236 (267)
190 cd03295 ABC_OpuCA_Osmoprotecti 97.5 9.5E-05 2E-09 76.2 5.3 67 988-1054 136-210 (242)
191 PRK10744 pstB phosphate transp 97.5 0.00011 2.4E-09 76.5 5.8 66 988-1054 157-229 (260)
192 TIGR02770 nickel_nikD nickel i 97.5 0.0001 2.3E-09 75.1 5.5 67 988-1054 126-200 (230)
193 PRK09580 sufC cysteine desulfu 97.5 0.00012 2.5E-09 76.1 5.8 66 988-1053 146-219 (248)
194 PRK14261 phosphate ABC transpo 97.5 0.00012 2.7E-09 75.9 6.1 67 988-1055 150-223 (253)
195 PRK11264 putative amino-acid A 97.5 0.00012 2.7E-09 75.9 6.0 67 988-1054 145-218 (250)
196 cd03273 ABC_SMC2_euk Eukaryoti 97.5 4.8E-05 1E-09 78.7 2.9 36 3-38 1-37 (251)
197 cd03234 ABCG_White The White s 97.5 0.00013 2.7E-09 74.4 5.9 67 988-1054 144-218 (226)
198 PRK14274 phosphate ABC transpo 97.5 0.00012 2.6E-09 76.3 5.9 66 988-1054 156-228 (259)
199 PRK10771 thiQ thiamine transpo 97.5 0.00012 2.7E-09 74.8 5.8 67 988-1054 130-204 (232)
200 PRK14270 phosphate ABC transpo 97.5 0.00012 2.6E-09 75.9 5.9 67 988-1055 148-221 (251)
201 cd03296 ABC_CysA_sulfate_impor 97.5 0.00011 2.3E-09 75.7 5.3 67 988-1054 137-211 (239)
202 PRK14239 phosphate transporter 97.5 0.00012 2.6E-09 76.2 5.7 66 988-1054 149-221 (252)
203 cd03265 ABC_DrrA DrrA is the A 97.5 0.00012 2.6E-09 74.3 5.6 67 988-1054 132-206 (220)
204 PRK13638 cbiO cobalt transport 97.5 0.00013 2.7E-09 76.6 5.9 68 988-1055 137-211 (271)
205 cd03279 ABC_sbcCD SbcCD and ot 97.5 0.00012 2.7E-09 73.4 5.6 63 999-1062 151-213 (213)
206 COG3910 Predicted ATPase [Gene 97.5 0.00011 2.4E-09 67.2 4.5 70 992-1063 137-209 (233)
207 TIGR03873 F420-0_ABC_ATP propo 97.5 0.00013 2.9E-09 75.8 6.0 67 988-1054 138-211 (256)
208 PRK14255 phosphate ABC transpo 97.5 0.00012 2.6E-09 76.0 5.7 66 988-1054 149-221 (252)
209 PRK14240 phosphate transporter 97.5 0.00013 2.9E-09 75.6 6.0 66 988-1054 147-219 (250)
210 PRK13538 cytochrome c biogenes 97.5 0.00014 3.1E-09 72.5 5.9 64 988-1051 130-199 (204)
211 TIGR03411 urea_trans_UrtD urea 97.5 0.00014 3.1E-09 75.0 6.1 66 988-1054 144-216 (242)
212 PRK11176 lipid transporter ATP 97.5 0.00011 2.3E-09 87.2 5.8 67 988-1055 481-553 (582)
213 PRK14256 phosphate ABC transpo 97.5 0.00013 2.8E-09 75.7 5.8 66 988-1054 149-221 (252)
214 KOG0994|consensus 97.5 0.38 8.3E-06 56.7 57.9 43 677-719 1590-1632(1758)
215 PRK13648 cbiO cobalt transport 97.5 0.00014 3E-09 76.2 5.9 67 988-1054 143-216 (269)
216 PRK14238 phosphate transporter 97.5 0.00015 3.3E-09 75.9 6.0 66 988-1054 168-240 (271)
217 PRK11124 artP arginine transpo 97.5 0.00015 3.2E-09 74.8 5.9 67 988-1054 142-215 (242)
218 PRK14251 phosphate ABC transpo 97.5 0.00014 3.1E-09 75.5 5.8 65 988-1053 148-219 (251)
219 PF06160 EzrA: Septation ring 97.5 0.36 7.8E-06 56.1 60.3 54 885-939 448-502 (560)
220 PRK11247 ssuB aliphatic sulfon 97.5 0.00014 3.1E-09 74.9 5.6 67 988-1054 134-208 (257)
221 KOG0978|consensus 97.5 0.34 7.3E-06 55.5 50.0 439 41-526 240-695 (698)
222 PRK13541 cytochrome c biogenes 97.5 0.00014 3E-09 72.0 5.2 63 988-1050 124-192 (195)
223 cd03300 ABC_PotA_N PotA is an 97.5 0.00014 3E-09 74.3 5.3 67 988-1054 131-205 (232)
224 PRK14263 phosphate ABC transpo 97.5 0.00017 3.8E-09 74.9 6.0 65 988-1053 150-221 (261)
225 PRK14267 phosphate ABC transpo 97.5 0.00016 3.5E-09 75.2 5.8 66 988-1054 150-222 (253)
226 cd03288 ABCC_SUR2 The SUR doma 97.5 0.00019 4.1E-09 74.6 6.3 67 988-1055 157-229 (257)
227 CHL00131 ycf16 sulfate ABC tra 97.5 0.00016 3.5E-09 75.2 5.7 66 988-1053 152-225 (252)
228 cd03277 ABC_SMC5_euk Eukaryoti 97.5 0.00016 3.5E-09 72.0 5.4 64 992-1055 141-207 (213)
229 cd03276 ABC_SMC6_euk Eukaryoti 97.5 0.00019 4.2E-09 70.6 5.9 62 993-1055 125-189 (198)
230 KOG0946|consensus 97.5 0.22 4.7E-06 56.6 29.4 54 114-167 662-715 (970)
231 TIGR00968 3a0106s01 sulfate AB 97.5 0.00015 3.3E-09 74.2 5.4 67 988-1054 131-205 (237)
232 PRK14244 phosphate ABC transpo 97.5 0.00018 3.9E-09 74.6 6.0 67 988-1055 150-223 (251)
233 PRK13539 cytochrome c biogenes 97.5 0.00018 3.9E-09 71.9 5.8 67 988-1055 128-200 (207)
234 PRK13650 cbiO cobalt transport 97.5 0.00017 3.6E-09 75.9 5.8 67 988-1054 141-214 (279)
235 PRK10789 putative multidrug tr 97.4 0.00016 3.4E-09 84.9 6.2 66 988-1054 452-523 (569)
236 TIGR01166 cbiO cobalt transpor 97.4 0.00014 3E-09 71.7 4.9 56 988-1043 128-189 (190)
237 PRK14237 phosphate transporter 97.4 0.00019 4.2E-09 74.9 6.1 66 988-1054 164-236 (267)
238 PRK14272 phosphate ABC transpo 97.4 0.00019 4.1E-09 74.6 6.0 66 988-1054 149-221 (252)
239 cd03279 ABC_sbcCD SbcCD and ot 97.4 7.1E-05 1.5E-09 75.1 2.7 35 3-38 1-40 (213)
240 PRK14253 phosphate ABC transpo 97.4 0.0002 4.4E-09 74.2 6.2 66 988-1054 146-218 (249)
241 cd03289 ABCC_CFTR2 The CFTR su 97.4 0.00022 4.8E-09 74.1 6.4 65 988-1053 139-209 (275)
242 PRK14275 phosphate ABC transpo 97.4 0.00021 4.5E-09 75.4 6.3 66 988-1054 183-255 (286)
243 PRK10895 lipopolysaccharide AB 97.4 0.00018 3.9E-09 74.2 5.7 67 988-1054 138-211 (241)
244 TIGR02323 CP_lyasePhnK phospho 97.4 0.00018 3.8E-09 74.8 5.7 67 988-1054 149-223 (253)
245 PRK14252 phosphate ABC transpo 97.4 0.00017 3.6E-09 75.5 5.4 65 988-1053 162-233 (265)
246 PRK14264 phosphate ABC transpo 97.4 0.00019 4.2E-09 76.3 6.0 65 988-1053 201-272 (305)
247 KOG0612|consensus 97.4 0.52 1.1E-05 56.5 44.6 36 105-140 497-532 (1317)
248 PRK09544 znuC high-affinity zi 97.4 0.00018 3.9E-09 74.1 5.6 66 988-1053 121-194 (251)
249 PRK14250 phosphate ABC transpo 97.4 0.00018 3.9E-09 74.0 5.5 67 988-1054 132-206 (241)
250 PRK11701 phnK phosphonate C-P 97.4 0.00018 3.8E-09 75.0 5.6 67 988-1054 152-226 (258)
251 PRK10790 putative multidrug tr 97.4 0.00016 3.6E-09 85.6 6.0 66 988-1054 477-548 (592)
252 PRK15112 antimicrobial peptide 97.4 0.00016 3.5E-09 75.5 5.2 67 988-1054 150-224 (267)
253 PRK10575 iron-hydroxamate tran 97.4 0.00018 4E-09 75.1 5.6 67 988-1054 148-222 (265)
254 PRK13543 cytochrome c biogenes 97.4 0.00021 4.6E-09 71.8 5.8 66 988-1053 138-210 (214)
255 PRK14271 phosphate ABC transpo 97.4 0.0002 4.4E-09 75.0 5.9 66 988-1054 164-236 (276)
256 PRK11231 fecE iron-dicitrate t 97.4 0.0002 4.3E-09 74.5 5.7 67 988-1054 139-212 (255)
257 PRK13651 cobalt transporter AT 97.4 0.00019 4E-09 76.1 5.5 66 988-1053 166-238 (305)
258 PRK13649 cbiO cobalt transport 97.4 0.00019 4.2E-09 75.7 5.7 67 988-1054 146-219 (280)
259 PRK10418 nikD nickel transport 97.4 0.0002 4.3E-09 74.3 5.6 67 988-1054 141-215 (254)
260 PRK14254 phosphate ABC transpo 97.4 0.00022 4.7E-09 75.1 5.9 63 988-1051 181-250 (285)
261 TIGR03005 ectoine_ehuA ectoine 97.4 0.0002 4.3E-09 74.3 5.6 67 988-1054 147-221 (252)
262 cd03294 ABC_Pro_Gly_Bertaine T 97.4 0.0002 4.2E-09 74.9 5.5 67 988-1054 161-235 (269)
263 PRK10253 iron-enterobactin tra 97.4 0.00021 4.6E-09 74.6 5.8 67 988-1054 144-218 (265)
264 TIGR02204 MsbA_rel ABC transpo 97.4 0.00018 3.8E-09 85.3 5.7 67 988-1055 477-549 (576)
265 TIGR03410 urea_trans_UrtE urea 97.4 0.00022 4.7E-09 73.0 5.7 67 988-1054 132-206 (230)
266 TIGR01188 drrA daunorubicin re 97.4 0.00022 4.8E-09 75.9 5.9 66 988-1053 125-197 (302)
267 PRK10419 nikE nickel transport 97.4 0.00019 4.2E-09 74.9 5.4 67 988-1054 152-226 (268)
268 PRK11831 putative ABC transpor 97.4 0.00019 4.2E-09 75.1 5.3 66 988-1053 144-217 (269)
269 PRK14257 phosphate ABC transpo 97.4 0.00024 5.1E-09 76.1 6.1 65 988-1053 226-297 (329)
270 PRK13632 cbiO cobalt transport 97.4 0.0002 4.4E-09 75.0 5.5 66 988-1053 143-215 (271)
271 PRK13647 cbiO cobalt transport 97.4 0.00024 5.2E-09 74.4 6.0 67 988-1054 139-212 (274)
272 COG1579 Zn-ribbon protein, pos 97.4 0.1 2.2E-06 51.4 23.2 47 680-726 33-79 (239)
273 PRK13644 cbiO cobalt transport 97.4 0.00024 5.3E-09 74.4 6.0 67 988-1054 137-209 (274)
274 TIGR01288 nodI ATP-binding ABC 97.4 0.00023 5E-09 75.9 5.9 67 988-1054 136-209 (303)
275 PRK14248 phosphate ABC transpo 97.4 0.00023 4.9E-09 74.6 5.8 65 988-1053 165-236 (268)
276 COG2274 SunT ABC-type bacterio 97.4 0.0002 4.4E-09 83.7 5.8 64 988-1052 610-679 (709)
277 PRK14265 phosphate ABC transpo 97.4 0.00025 5.4E-09 74.3 6.0 66 988-1054 162-234 (274)
278 PRK13643 cbiO cobalt transport 97.4 0.00024 5.2E-09 75.0 5.9 68 988-1055 145-219 (288)
279 PRK13635 cbiO cobalt transport 97.4 0.00024 5.1E-09 74.7 5.8 67 988-1054 141-214 (279)
280 PRK14246 phosphate ABC transpo 97.4 0.00025 5.4E-09 73.5 5.9 66 988-1054 154-226 (257)
281 cd03301 ABC_MalK_N The N-termi 97.4 0.00022 4.8E-09 71.9 5.3 66 988-1053 131-204 (213)
282 PRK15056 manganese/iron transp 97.4 0.00022 4.8E-09 74.7 5.5 64 988-1051 143-213 (272)
283 PRK14236 phosphate transporter 97.4 0.00026 5.6E-09 74.3 6.0 67 988-1055 169-242 (272)
284 COG1132 MdlB ABC-type multidru 97.4 0.00021 4.5E-09 84.2 5.9 67 988-1055 466-538 (567)
285 cd03236 ABC_RNaseL_inhibitor_d 97.4 0.00033 7.1E-09 72.0 6.5 67 988-1054 140-213 (255)
286 PRK13546 teichoic acids export 97.4 0.00026 5.6E-09 73.3 5.8 66 988-1053 144-216 (264)
287 TIGR03375 type_I_sec_LssB type 97.4 0.00026 5.7E-09 85.5 6.7 66 988-1054 602-673 (694)
288 cd03231 ABC_CcmA_heme_exporter 97.4 0.00031 6.7E-09 69.9 6.1 62 988-1049 126-193 (201)
289 PRK13631 cbiO cobalt transport 97.4 0.00025 5.4E-09 75.7 5.8 67 988-1054 177-250 (320)
290 PRK13637 cbiO cobalt transport 97.4 0.00025 5.4E-09 74.9 5.7 68 988-1055 145-220 (287)
291 TIGR01192 chvA glucan exporter 97.4 0.00025 5.5E-09 83.3 6.4 67 988-1055 472-544 (585)
292 PRK11300 livG leucine/isoleuci 97.4 0.00025 5.4E-09 73.9 5.7 67 988-1054 154-228 (255)
293 COG1121 ZnuC ABC-type Mn/Zn tr 97.3 0.00031 6.7E-09 69.7 5.8 68 988-1055 140-214 (254)
294 PRK11160 cysteine/glutathione 97.3 0.00025 5.5E-09 83.2 6.2 66 988-1054 476-547 (574)
295 PRK13645 cbiO cobalt transport 97.3 0.00023 5E-09 75.4 5.4 67 988-1054 151-225 (289)
296 PRK14243 phosphate transporter 97.3 0.00031 6.7E-09 73.3 6.0 66 988-1054 152-224 (264)
297 PRK13642 cbiO cobalt transport 97.3 0.00028 6.1E-09 74.1 5.7 67 988-1054 141-214 (277)
298 PRK09984 phosphonate/organopho 97.3 0.00026 5.7E-09 73.9 5.5 67 988-1054 153-227 (262)
299 PRK11153 metN DL-methionine tr 97.3 0.00027 6E-09 76.4 5.7 67 988-1054 141-215 (343)
300 TIGR01842 type_I_sec_PrtD type 97.3 0.00028 6E-09 82.6 6.1 67 988-1054 455-527 (544)
301 cd03274 ABC_SMC4_euk Eukaryoti 97.3 0.00013 2.9E-09 72.6 2.9 36 3-38 1-37 (212)
302 PRK14260 phosphate ABC transpo 97.3 0.00032 7E-09 73.0 6.0 66 988-1054 151-223 (259)
303 TIGR02769 nickel_nikE nickel i 97.3 0.00029 6.4E-09 73.6 5.6 68 988-1055 151-226 (265)
304 TIGR01846 type_I_sec_HlyB type 97.3 0.00027 5.9E-09 85.3 6.1 66 988-1054 594-665 (694)
305 cd03239 ABC_SMC_head The struc 97.3 0.00014 3.1E-09 70.0 2.9 33 5-38 1-34 (178)
306 PRK13636 cbiO cobalt transport 97.3 0.00029 6.2E-09 74.3 5.5 67 988-1054 142-216 (283)
307 PRK13633 cobalt transporter AT 97.3 0.0003 6.5E-09 74.1 5.6 67 988-1054 145-218 (280)
308 PRK03695 vitamin B12-transport 97.3 0.00033 7.3E-09 72.2 5.9 56 999-1054 151-207 (248)
309 PRK15177 Vi polysaccharide exp 97.3 0.00037 8E-09 69.8 5.9 66 988-1054 105-177 (213)
310 TIGR01189 ccmA heme ABC export 97.3 0.0003 6.5E-09 69.9 5.1 59 988-1046 128-192 (198)
311 PRK13639 cbiO cobalt transport 97.3 0.00038 8.2E-09 73.1 6.1 66 988-1053 138-210 (275)
312 KOG0612|consensus 97.3 0.76 1.6E-05 55.2 44.3 27 108-134 507-533 (1317)
313 cd03271 ABC_UvrA_II The excisi 97.3 0.00057 1.2E-08 69.7 7.1 66 988-1053 170-244 (261)
314 PRK13547 hmuV hemin importer A 97.3 0.00035 7.6E-09 72.8 5.6 68 988-1055 146-230 (272)
315 PRK13640 cbiO cobalt transport 97.3 0.00036 7.8E-09 73.5 5.7 67 988-1054 144-217 (282)
316 TIGR03522 GldA_ABC_ATP gliding 97.3 0.0004 8.6E-09 73.9 6.1 66 988-1054 134-206 (301)
317 cd03290 ABCC_SUR1_N The SUR do 97.3 0.00046 1E-08 69.8 6.3 64 988-1051 141-212 (218)
318 PRK14258 phosphate ABC transpo 97.3 0.00037 7.9E-09 72.7 5.6 67 988-1054 151-225 (261)
319 PF09728 Taxilin: Myosin-like 97.3 0.35 7.5E-06 50.9 37.0 53 335-387 217-269 (309)
320 PRK13545 tagH teichoic acids e 97.3 0.0004 8.7E-09 76.9 6.0 67 988-1054 144-217 (549)
321 TIGR02982 heterocyst_DevA ABC 97.2 0.00034 7.4E-09 70.8 5.1 66 988-1053 142-214 (220)
322 cd03291 ABCC_CFTR1 The CFTR su 97.2 0.00047 1E-08 71.9 6.2 65 988-1053 160-231 (282)
323 PRK13548 hmuV hemin importer A 97.2 0.00044 9.5E-09 71.8 6.0 67 988-1054 135-215 (258)
324 TIGR01194 cyc_pep_trnsptr cycl 97.2 0.00036 7.8E-09 81.6 5.9 67 988-1054 471-544 (555)
325 PRK13646 cbiO cobalt transport 97.2 0.00039 8.6E-09 73.3 5.6 67 988-1054 146-220 (286)
326 PRK13641 cbiO cobalt transport 97.2 0.00044 9.6E-09 73.0 6.0 68 988-1055 146-220 (287)
327 KOG4673|consensus 97.2 0.52 1.1E-05 52.4 58.6 20 624-643 613-632 (961)
328 PRK14266 phosphate ABC transpo 97.2 0.00051 1.1E-08 71.3 6.1 63 988-1051 147-216 (250)
329 PRK14249 phosphate ABC transpo 97.2 0.00053 1.1E-08 71.1 6.1 66 988-1054 148-220 (251)
330 PRK11022 dppD dipeptide transp 97.2 0.00045 9.7E-09 74.1 5.7 68 988-1055 154-229 (326)
331 PRK13652 cbiO cobalt transport 97.2 0.00048 1E-08 72.4 5.7 67 988-1054 138-212 (277)
332 COG4987 CydC ABC-type transpor 97.2 0.00061 1.3E-08 73.6 6.4 65 988-1053 475-545 (573)
333 PRK15079 oligopeptide ABC tran 97.2 0.00046 1E-08 73.9 5.6 67 988-1054 162-236 (331)
334 TIGR03719 ABC_ABC_ChvD ATP-bin 97.2 0.00054 1.2E-08 80.1 6.6 76 988-1068 444-526 (552)
335 TIGR01187 potA spermidine/putr 97.2 0.00047 1E-08 74.0 5.6 67 988-1054 101-175 (325)
336 COG1126 GlnQ ABC-type polar am 97.2 0.00048 1E-08 65.2 4.8 65 988-1052 137-208 (240)
337 PRK10636 putative ABC transpor 97.2 0.00047 1E-08 81.5 6.0 75 988-1068 431-512 (638)
338 cd03240 ABC_Rad50 The catalyti 97.2 0.00022 4.9E-09 70.6 2.8 33 5-38 1-34 (204)
339 cd03250 ABCC_MRP_domain1 Domai 97.2 0.00069 1.5E-08 67.7 6.3 66 988-1053 128-200 (204)
340 PRK13634 cbiO cobalt transport 97.2 0.00052 1.1E-08 72.5 5.7 67 988-1054 146-220 (290)
341 PRK13536 nodulation factor exp 97.2 0.00057 1.2E-08 73.5 5.9 67 988-1054 173-246 (340)
342 cd03275 ABC_SMC1_euk Eukaryoti 97.2 0.00024 5.3E-09 73.1 3.0 34 5-38 1-34 (247)
343 PF12718 Tropomyosin_1: Tropom 97.2 0.084 1.8E-06 48.1 18.8 34 262-295 18-51 (143)
344 PRK11308 dppF dipeptide transp 97.2 0.00053 1.2E-08 73.4 5.6 68 988-1055 155-230 (327)
345 TIGR02857 CydD thiol reductant 97.1 0.00051 1.1E-08 80.3 5.8 64 988-1052 459-528 (529)
346 PRK15439 autoinducer 2 ABC tra 97.1 0.00048 1E-08 79.6 5.4 67 988-1054 404-477 (510)
347 PRK13537 nodulation ABC transp 97.1 0.00066 1.4E-08 72.2 6.0 67 988-1054 139-212 (306)
348 PRK15093 antimicrobial peptide 97.1 0.00063 1.4E-08 73.2 5.8 67 988-1054 159-233 (330)
349 PRK11000 maltose/maltodextrin 97.1 0.00054 1.2E-08 74.8 5.3 67 988-1054 134-208 (369)
350 cd03272 ABC_SMC3_euk Eukaryoti 97.1 0.00028 6.1E-09 72.9 2.9 34 5-38 1-35 (243)
351 COG3840 ThiQ ABC-type thiamine 97.1 0.00055 1.2E-08 62.5 4.3 68 988-1055 130-205 (231)
352 COG1127 Ttg2A ABC-type transpo 97.1 0.0007 1.5E-08 65.2 5.2 68 988-1055 146-221 (263)
353 PRK11144 modC molybdate transp 97.1 0.00059 1.3E-08 74.2 5.3 66 988-1053 129-202 (352)
354 PF13476 AAA_23: AAA domain; P 97.1 0.00019 4E-09 72.1 1.3 30 7-38 1-31 (202)
355 PRK10762 D-ribose transporter 97.1 0.00061 1.3E-08 78.7 5.7 67 988-1054 396-469 (501)
356 PRK10070 glycine betaine trans 97.1 0.0007 1.5E-08 74.0 5.8 67 988-1054 165-239 (400)
357 TIGR02142 modC_ABC molybdenum 97.1 0.00068 1.5E-08 73.8 5.7 67 988-1054 132-206 (354)
358 COG1122 CbiO ABC-type cobalt t 97.1 0.00064 1.4E-08 68.0 5.0 68 988-1055 139-214 (235)
359 PRK13409 putative ATPase RIL; 97.1 0.00076 1.7E-08 78.4 6.3 66 988-1053 454-527 (590)
360 cd03233 ABC_PDR_domain1 The pl 97.1 0.0008 1.7E-08 66.9 5.7 68 988-1055 119-195 (202)
361 PRK09473 oppD oligopeptide tra 97.1 0.0007 1.5E-08 72.6 5.6 67 988-1054 162-236 (330)
362 TIGR02314 ABC_MetN D-methionin 97.1 0.00074 1.6E-08 72.4 5.5 66 988-1053 141-214 (343)
363 PRK10982 galactose/methyl gala 97.1 0.00073 1.6E-08 77.9 5.9 67 988-1054 135-208 (491)
364 COG1131 CcmA ABC-type multidru 97.1 0.00082 1.8E-08 70.6 5.7 63 992-1054 147-211 (293)
365 PRK11147 ABC transporter ATPas 97.1 0.00074 1.6E-08 80.1 6.0 77 988-1069 441-524 (635)
366 PRK10522 multidrug transporter 97.0 0.00069 1.5E-08 79.3 5.7 67 988-1054 450-523 (547)
367 TIGR02633 xylG D-xylose ABC tr 97.0 0.00077 1.7E-08 78.0 5.9 67 988-1054 142-215 (500)
368 PRK15134 microcin C ABC transp 97.0 0.00063 1.4E-08 79.2 5.2 67 988-1054 157-231 (529)
369 PRK10938 putative molybdenum t 97.0 0.00077 1.7E-08 77.8 5.8 66 988-1053 402-476 (490)
370 TIGR01186 proV glycine betaine 97.0 0.00087 1.9E-08 72.3 5.8 66 988-1053 130-203 (363)
371 PRK11288 araG L-arabinose tran 97.0 0.00078 1.7E-08 77.8 5.8 67 988-1054 141-214 (501)
372 TIGR02633 xylG D-xylose ABC tr 97.0 0.00071 1.5E-08 78.3 5.5 67 988-1054 404-477 (500)
373 PRK11288 araG L-arabinose tran 97.0 0.00082 1.8E-08 77.6 5.9 67 988-1054 397-470 (501)
374 cd03299 ABC_ModC_like Archeal 97.0 0.00084 1.8E-08 68.7 5.3 67 988-1054 130-204 (235)
375 PRK10851 sulfate/thiosulfate t 97.0 0.0009 1.9E-08 72.4 5.7 67 988-1054 137-211 (353)
376 PRK10938 putative molybdenum t 97.0 0.0008 1.7E-08 77.6 5.6 67 988-1054 136-209 (490)
377 PF08317 Spc7: Spc7 kinetochor 97.0 0.68 1.5E-05 49.6 28.2 127 98-228 138-265 (325)
378 PRK11650 ugpC glycerol-3-phosp 97.0 0.001 2.2E-08 72.2 5.9 66 988-1053 135-208 (356)
379 TIGR03797 NHPM_micro_ABC2 NHPM 97.0 0.00089 1.9E-08 80.9 6.2 64 988-1054 589-658 (686)
380 PRK11819 putative ABC transpor 97.0 0.0011 2.3E-08 77.6 6.5 76 988-1068 446-528 (556)
381 TIGR01193 bacteriocin_ABC ABC- 97.0 0.00099 2.1E-08 80.8 6.5 65 988-1054 612-682 (708)
382 KOG0995|consensus 97.0 0.83 1.8E-05 50.3 37.3 319 108-443 220-542 (581)
383 KOG0979|consensus 97.0 1.3 2.8E-05 52.3 58.2 103 452-554 434-544 (1072)
384 PRK15439 autoinducer 2 ABC tra 97.0 0.00099 2.1E-08 77.0 6.0 68 988-1055 141-215 (510)
385 PRK15134 microcin C ABC transp 97.0 0.00082 1.8E-08 78.2 5.4 67 988-1054 426-500 (529)
386 TIGR03269 met_CoM_red_A2 methy 97.0 0.00092 2E-08 77.7 5.5 67 988-1054 169-243 (520)
387 TIGR00630 uvra excinuclease AB 96.9 0.00094 2E-08 80.5 5.5 66 988-1053 488-561 (924)
388 PRK09452 potA putrescine/sperm 96.9 0.0012 2.6E-08 71.8 5.8 66 988-1053 145-218 (375)
389 PRK09700 D-allose transporter 96.9 0.001 2.2E-08 77.1 5.7 67 988-1054 410-483 (510)
390 PRK10762 D-ribose transporter 96.9 0.0011 2.3E-08 76.7 5.8 68 988-1055 142-216 (501)
391 PRK09536 btuD corrinoid ABC tr 96.9 0.0013 2.9E-08 71.9 6.1 67 988-1054 140-213 (402)
392 PRK13549 xylose transporter AT 96.9 0.0011 2.4E-08 76.7 5.8 67 988-1054 144-217 (506)
393 PRK10982 galactose/methyl gala 96.9 0.0011 2.3E-08 76.6 5.4 68 988-1055 392-466 (491)
394 PRK09700 D-allose transporter 96.9 0.0012 2.6E-08 76.6 5.9 67 988-1054 146-219 (510)
395 KOG0057|consensus 96.9 0.0017 3.7E-08 70.3 6.3 67 988-1055 488-560 (591)
396 PTZ00265 multidrug resistance 96.9 0.0012 2.6E-08 85.1 6.3 77 988-1064 580-663 (1466)
397 PF02463 SMC_N: RecF/RecN/SMC 96.9 0.00052 1.1E-08 69.6 2.4 33 5-38 2-36 (220)
398 TIGR03269 met_CoM_red_A2 methy 96.9 0.0012 2.5E-08 76.9 5.6 67 988-1054 428-502 (520)
399 PF13304 AAA_21: AAA domain; P 96.9 0.0014 3.1E-08 70.2 6.0 43 1001-1044 259-302 (303)
400 KOG0963|consensus 96.9 1.1 2.4E-05 49.9 36.8 18 406-423 420-437 (629)
401 PRK10636 putative ABC transpor 96.9 0.0015 3.3E-08 77.3 6.3 76 988-1069 150-232 (638)
402 TIGR03719 ABC_ABC_ChvD ATP-bin 96.8 0.0015 3.3E-08 76.3 6.2 64 988-1054 162-232 (552)
403 TIGR00958 3a01208 Conjugate Tr 96.8 0.0012 2.5E-08 79.7 5.4 64 988-1054 618-687 (711)
404 PRK13549 xylose transporter AT 96.8 0.0014 3E-08 75.9 5.7 67 988-1054 406-479 (506)
405 PLN03211 ABC transporter G-25; 96.8 0.0016 3.5E-08 76.9 6.2 67 988-1054 207-281 (659)
406 PTZ00265 multidrug resistance 96.8 0.0017 3.7E-08 83.7 6.8 68 988-1055 1359-1433(1466)
407 TIGR03258 PhnT 2-aminoethylpho 96.8 0.0018 3.9E-08 70.2 5.6 66 988-1053 138-212 (362)
408 PRK00635 excinuclease ABC subu 96.8 0.0017 3.6E-08 82.8 5.9 67 988-1054 477-551 (1809)
409 PLN03073 ABC transporter F fam 96.8 0.0019 4.1E-08 76.8 6.1 64 988-1054 628-698 (718)
410 TIGR03796 NHPM_micro_ABC1 NHPM 96.7 0.0018 3.8E-08 78.8 6.0 64 988-1054 616-685 (710)
411 TIGR03265 PhnT2 putative 2-ami 96.7 0.0018 4E-08 70.0 5.4 64 988-1051 135-206 (353)
412 TIGR03415 ABC_choXWV_ATP choli 96.7 0.002 4.4E-08 69.9 5.6 66 988-1053 165-238 (382)
413 COG4942 Membrane-bound metallo 96.7 1.2 2.5E-05 47.9 31.7 21 1020-1044 344-364 (420)
414 PRK10535 macrolide transporter 96.7 0.002 4.4E-08 76.5 5.8 68 988-1055 145-218 (648)
415 PRK13409 putative ATPase RIL; 96.7 0.0028 6.1E-08 73.8 6.8 65 988-1053 213-284 (590)
416 smart00787 Spc7 Spc7 kinetocho 96.7 1.1 2.3E-05 47.2 27.1 127 98-228 133-260 (312)
417 PRK11819 putative ABC transpor 96.7 0.0024 5.1E-08 74.7 6.2 64 988-1054 164-234 (556)
418 TIGR00954 3a01203 Peroxysomal 96.7 0.0021 4.6E-08 76.4 5.9 63 988-1053 583-651 (659)
419 PRK11147 ABC transporter ATPas 96.7 0.0023 5E-08 76.0 6.2 64 988-1054 157-227 (635)
420 COG4619 ABC-type uncharacteriz 96.7 0.0033 7.2E-08 56.6 5.4 67 988-1055 134-209 (223)
421 PF05667 DUF812: Protein of un 96.7 1.9 4E-05 49.9 33.7 17 913-929 558-574 (594)
422 cd03277 ABC_SMC5_euk Eukaryoti 96.7 0.001 2.2E-08 66.3 2.6 34 3-38 1-35 (213)
423 PRK10261 glutathione transport 96.7 0.0022 4.7E-08 75.9 5.7 67 988-1054 464-538 (623)
424 PRK14079 recF recombination pr 96.7 0.00093 2E-08 72.2 2.4 51 998-1054 289-339 (349)
425 PRK11432 fbpC ferric transport 96.6 0.0024 5.2E-08 69.0 5.4 67 988-1054 137-211 (351)
426 PRK00349 uvrA excinuclease ABC 96.6 0.0031 6.8E-08 76.3 6.9 66 988-1053 831-905 (943)
427 COG1116 TauB ABC-type nitrate/ 96.6 0.0034 7.4E-08 61.5 5.8 69 988-1056 131-207 (248)
428 PRK15064 ABC transporter ATP-b 96.6 0.0027 5.9E-08 74.0 6.1 75 988-1068 156-237 (530)
429 PRK15064 ABC transporter ATP-b 96.6 0.0027 5.9E-08 73.9 6.0 64 988-1054 439-509 (530)
430 cd03276 ABC_SMC6_euk Eukaryoti 96.6 0.0012 2.5E-08 65.1 2.4 32 5-38 1-33 (198)
431 COG4161 ArtP ABC-type arginine 96.6 0.004 8.6E-08 55.4 5.3 69 988-1059 142-217 (242)
432 COG4133 CcmA ABC-type transpor 96.6 0.0034 7.3E-08 58.1 5.0 57 992-1048 141-197 (209)
433 PF04849 HAP1_N: HAP1 N-termin 96.6 1.1 2.3E-05 46.0 27.9 70 365-434 230-299 (306)
434 KOG4673|consensus 96.6 1.8 3.9E-05 48.3 59.6 21 286-306 612-632 (961)
435 TIGR02868 CydC thiol reductant 96.5 0.0028 6.2E-08 74.1 5.7 53 988-1041 471-529 (529)
436 COG0444 DppD ABC-type dipeptid 96.5 0.0031 6.6E-08 64.4 5.0 64 988-1051 154-225 (316)
437 PRK10261 glutathione transport 96.5 0.0029 6.3E-08 74.9 5.5 67 988-1054 169-243 (623)
438 PRK00349 uvrA excinuclease ABC 96.5 0.003 6.5E-08 76.5 5.5 66 988-1053 490-563 (943)
439 COG1245 Predicted ATPase, RNas 96.5 0.0046 9.9E-08 65.3 6.1 82 988-1069 214-301 (591)
440 PRK11607 potG putrescine trans 96.5 0.0036 7.8E-08 68.3 5.7 66 988-1053 150-223 (377)
441 TIGR00630 uvra excinuclease AB 96.5 0.0046 9.9E-08 74.8 6.9 66 988-1053 829-903 (924)
442 TIGR01271 CFTR_protein cystic 96.5 0.0035 7.6E-08 81.6 6.3 61 992-1053 1364-1424(1490)
443 TIGR00955 3a01204 The Eye Pigm 96.5 0.0032 6.9E-08 74.5 5.3 66 988-1053 167-240 (617)
444 PF14915 CCDC144C: CCDC144C pr 96.4 1.2 2.6E-05 44.8 39.8 6 184-189 75-80 (305)
445 TIGR00611 recf recF protein. A 96.4 0.027 5.9E-07 61.3 11.9 43 999-1044 302-344 (365)
446 COG1117 PstB ABC-type phosphat 96.4 0.0042 9E-08 58.7 4.7 61 988-1049 150-217 (253)
447 COG1124 DppF ABC-type dipeptid 96.4 0.0039 8.5E-08 60.6 4.7 64 988-1051 142-213 (252)
448 PRK00064 recF recombination pr 96.4 0.046 9.9E-07 59.7 13.6 45 997-1044 298-342 (361)
449 COG1119 ModF ABC-type molybden 96.4 0.0051 1.1E-07 59.8 5.3 54 992-1045 182-237 (257)
450 COG1120 FepC ABC-type cobalami 96.4 0.0049 1.1E-07 61.8 5.3 66 988-1053 139-212 (258)
451 PF09728 Taxilin: Myosin-like 96.4 1.7 3.6E-05 45.9 39.9 95 336-430 204-298 (309)
452 COG4181 Predicted ABC-type tra 96.4 0.0056 1.2E-07 55.4 5.0 67 988-1054 147-220 (228)
453 COG1137 YhbG ABC-type (unclass 96.4 0.0056 1.2E-07 57.2 5.1 68 988-1055 140-214 (243)
454 COG4152 ABC-type uncharacteriz 96.4 0.0066 1.4E-07 58.6 5.7 54 997-1050 146-200 (300)
455 PTZ00243 ABC transporter; Prov 96.3 0.0048 1E-07 80.5 6.4 61 992-1053 1456-1517(1560)
456 PLN03073 ABC transporter F fam 96.3 0.0058 1.3E-07 72.7 6.5 75 988-1068 345-426 (718)
457 cd03241 ABC_RecN RecN ATPase i 96.3 0.002 4.2E-08 67.6 2.1 32 5-38 1-33 (276)
458 TIGR00611 recf recF protein. A 96.3 0.0019 4.2E-08 70.0 1.9 34 3-38 1-35 (365)
459 PLN03232 ABC transporter C fam 96.2 0.0057 1.2E-07 79.9 6.3 62 992-1054 1382-1443(1495)
460 KOG0058|consensus 96.2 0.0054 1.2E-07 69.3 5.2 67 988-1055 605-677 (716)
461 KOG0055|consensus 96.2 0.0055 1.2E-07 73.9 5.5 67 988-1055 490-562 (1228)
462 PLN03130 ABC transporter C fam 96.2 0.0062 1.3E-07 79.7 6.5 62 992-1054 1385-1446(1622)
463 PLN03140 ABC transporter G fam 96.2 0.0064 1.4E-07 78.3 6.1 68 988-1055 1020-1095(1470)
464 COG4618 ArpD ABC-type protease 96.2 0.0065 1.4E-07 65.3 5.0 63 988-1051 473-542 (580)
465 TIGR00957 MRP_assoc_pro multi 96.1 0.007 1.5E-07 79.2 6.3 62 992-1054 1432-1493(1522)
466 KOG0963|consensus 96.1 3.3 7.1E-05 46.4 37.8 39 98-136 11-49 (629)
467 cd03243 ABC_MutS_homologs The 96.0 0.008 1.7E-07 59.8 4.9 62 992-1053 101-163 (202)
468 PRK00064 recF recombination pr 96.0 0.0032 7E-08 68.5 2.3 34 3-38 1-35 (361)
469 PF14915 CCDC144C: CCDC144C pr 96.0 1.9 4.2E-05 43.4 37.2 46 183-228 88-133 (305)
470 COG4525 TauB ABC-type taurine 96.0 0.008 1.7E-07 55.8 4.3 71 988-1059 133-211 (259)
471 PLN03232 ABC transporter C fam 96.0 0.0077 1.7E-07 78.7 5.9 66 988-1054 741-813 (1495)
472 COG1129 MglA ABC-type sugar tr 96.0 0.011 2.4E-07 65.0 6.2 63 992-1055 156-219 (500)
473 cd03278 ABC_SMC_barmotin Barmo 96.0 0.0046 1E-07 60.8 2.8 33 5-38 1-34 (197)
474 cd03242 ABC_RecF RecF is a rec 96.0 0.004 8.7E-08 65.0 2.5 32 5-38 1-33 (270)
475 COG1125 OpuBA ABC-type proline 96.0 0.0084 1.8E-07 58.4 4.3 63 988-1050 136-206 (309)
476 PF15619 Lebercilin: Ciliary p 95.9 1.8 3.8E-05 41.9 24.5 15 184-198 73-87 (194)
477 COG4778 PhnL ABC-type phosphon 95.9 0.011 2.4E-07 53.4 4.6 63 997-1059 168-231 (235)
478 PLN03130 ABC transporter C fam 95.9 0.0094 2E-07 78.0 5.9 65 988-1053 741-812 (1622)
479 TIGR01271 CFTR_protein cystic 95.9 0.01 2.3E-07 77.3 6.2 66 988-1054 549-621 (1490)
480 KOG0980|consensus 95.9 5 0.00011 46.8 31.3 10 29-38 318-327 (980)
481 cd03280 ABC_MutS2 MutS2 homolo 95.8 0.011 2.4E-07 58.7 4.9 58 997-1054 106-164 (200)
482 TIGR01257 rim_protein retinal- 95.8 0.013 2.8E-07 76.6 6.4 66 988-1054 1062-1134(2272)
483 KOG0980|consensus 95.8 5.4 0.00012 46.5 38.0 8 211-218 390-397 (980)
484 PF10473 CENP-F_leu_zip: Leuci 95.8 1.4 3E-05 39.6 17.8 118 320-437 10-127 (140)
485 TIGR00957 MRP_assoc_pro multi 95.7 0.012 2.7E-07 77.0 6.0 66 988-1054 761-835 (1522)
486 COG3845 ABC-type uncharacteriz 95.7 0.013 2.8E-07 63.1 5.0 66 997-1068 156-222 (501)
487 KOG0995|consensus 95.6 4.7 0.0001 44.7 45.7 356 44-437 215-579 (581)
488 KOG4593|consensus 95.6 5.4 0.00012 45.4 49.7 394 24-443 14-521 (716)
489 PF10473 CENP-F_leu_zip: Leuci 95.6 1.6 3.5E-05 39.2 19.3 138 107-270 1-138 (140)
490 COG1195 RecF Recombinational D 95.5 0.12 2.6E-06 54.7 11.2 112 3-116 1-206 (363)
491 PRK14079 recF recombination pr 95.5 0.16 3.5E-06 55.1 12.5 140 909-1054 142-339 (349)
492 PF05557 MAD: Mitotic checkpoi 95.5 0.0037 8.1E-08 75.2 0.0 315 106-434 90-408 (722)
493 PLN03140 ABC transporter G fam 95.4 0.015 3.4E-07 74.8 5.1 68 988-1056 337-414 (1470)
494 COG0488 Uup ATPase components 95.4 0.023 5E-07 64.4 5.8 77 988-1069 154-236 (530)
495 COG3950 Predicted ATP-binding 95.4 0.0078 1.7E-07 61.0 1.8 34 3-38 1-36 (440)
496 TIGR00956 3a01205 Pleiotropic 95.4 0.017 3.8E-07 74.6 5.5 69 988-1057 210-288 (1394)
497 cd03283 ABC_MutS-like MutS-lik 95.4 0.03 6.6E-07 55.1 6.0 69 998-1066 104-183 (199)
498 COG0488 Uup ATPase components 95.3 0.028 6.1E-07 63.7 6.1 76 988-1069 440-521 (530)
499 COG1245 Predicted ATPase, RNas 95.3 0.029 6.2E-07 59.6 5.6 83 988-1070 456-545 (591)
500 TIGR01257 rim_protein retinal- 95.2 0.025 5.4E-07 74.1 6.1 69 988-1056 2071-2146(2272)
No 1
>KOG0018|consensus
Probab=100.00 E-value=1.3e-89 Score=750.08 Aligned_cols=956 Identities=44% Similarity=0.719 Sum_probs=798.0
Q ss_pred CCccccceecccccccCcccccCCCCeEEEEcCCCCc-------------------------------------------
Q psy16118 2 SPILQYIEVDNFKSYKGKFSIGPLKKFTAVIGPNGSG------------------------------------------- 38 (1070)
Q Consensus 2 ~m~~~~L~l~~F~~y~~~~~i~df~~l~lI~G~nGaG------------------------------------------- 38 (1070)
||+++.|+|.||+||+|+++||||+.|++|+||||||
T Consensus 1 ~g~L~~lEieNFKSYkGh~~iGPF~~FTaIIGPNGSGKSNlMDAISFVLGekss~LR~~~lkdLIyg~~i~~~v~l~Y~~ 80 (1141)
T KOG0018|consen 1 MGRLLTLEIENFKSYKGHQVIGPFDRFTAIIGPNGSGKSNLMDAISFVLGEKSSHLRVSHLKDLIYGKPIRKPVTLKYEE 80 (1141)
T ss_pred CCceeeeehhccccccCceeecCchhceeeeCCCCCchHHHHHHHHHHhcCCCcccccchHHHHhcCCccCCchhheeec
Confidence 7999999999999999999999999999999999999
Q ss_pred ----------------------------------------------------------------------------cchH
Q psy16118 39 ----------------------------------------------------------------------------ALKD 42 (1070)
Q Consensus 39 ----------------------------------------------------------------------------~~~~ 42 (1070)
.++.
T Consensus 81 ~dg~~~~F~R~I~~G~seY~IDne~VT~eeY~~eLekinIlVkARNFLVFQGdVE~IA~k~PkElt~LFEEISgSiElK~ 160 (1141)
T KOG0018|consen 81 GDGETRRFTRAINGGTSEYMIDNEIVTREEYLEELEKINILVKARNFLVFQGDVEKIAGKNPKELTALFEEISGSIELKP 160 (1141)
T ss_pred CCchhhhhhhhhcCCceeEEEcceeccHHHHHHHHhhcceeeeeeeEEEecChHHHHhccCHHHHHHHHHHHhhhhhhhH
Confidence 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q psy16118 43 DYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDIKELEDELDKKK 122 (1070)
Q Consensus 43 ~y~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1070)
+|...+.+.......+.......+.|..+.+..+....++.+|+.+.++.......+.+|+++..+..+.....++...+
T Consensus 161 EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~ 240 (1141)
T KOG0018|consen 161 EYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLN 240 (1141)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 123 GEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQAN 202 (1070)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1070)
.++..+....+.....+...+.+.....+++......+...+..+.. ...+............++...+..+...+...
T Consensus 241 ~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~ 319 (1141)
T KOG0018|consen 241 AEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDY 319 (1141)
T ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHH
Confidence 99999999999999999888877778888888888888888877777 55667777777778888888888888887777
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhhhHHhhhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16118 203 EAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANE 282 (1070)
Q Consensus 203 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 282 (1070)
..+...++.++.++..+......+..+++ . ..+
T Consensus 320 ~~~~~~ie~~ek~l~av~~~~~~fekei~-------------------------------------~-------~~q--- 352 (1141)
T KOG0018|consen 320 RALKETIERLEKELKAVEGAKEEFEKEIE-------------------------------------E-------RSQ--- 352 (1141)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------H-------HHh---
Confidence 77777777777777777666655555221 0 000
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcccChHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy16118 283 AHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATKRAGKILQQLDTINREQKGDQDKLDNELR 362 (1070)
Q Consensus 283 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 362 (1070)
.....+......+.++.....++.... ..++.-+......-+..++.+..
T Consensus 353 ---------------------------~rg~~lnl~d~~~~ey~rlk~ea~~~~---~~el~~ln~~~r~~~~~ld~~~~ 402 (1141)
T KOG0018|consen 353 ---------------------------ERGSELNLKDDQVEEYERLKEEACKEA---LEELEVLNRNMRSDQDTLDHELE 402 (1141)
T ss_pred ---------------------------hccccCCcchHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHhhHHH
Confidence 000011112222223333222222221 33344444444444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy16118 363 QQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEELGDAKTDKH 442 (1070)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 442 (1070)
....++..+..+...+.........+...+.++...+.++...+..+...+.....+...++.++.....++.++..+..
T Consensus 403 ~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~ 482 (1141)
T KOG0018|consen 403 RRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRH 482 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhc
Confidence 55666666666666666666677777777777777777777888888888888888888888888888888888888887
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcceecccccccchhhHHHHHHHHhccCCCeEEeCCHHHHHHHHHHHhhcCCCCcceecC
Q psy16118 443 EDTRRKKKQELVENFKKAYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPI 522 (1070)
Q Consensus 443 ~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~~~~~L~~~~~~~~~~~~~ 522 (1070)
.+.+......++..|+.++|||+|++.++|+|....|..|+..++|..+++++|++...+..||.|++....|+.||+|+
T Consensus 483 e~sR~~~~~eave~lKr~fPgv~GrviDLc~pt~kkyeiAvt~~Lgk~~daIiVdte~ta~~CI~ylKeqr~~~~TFlPl 562 (1141)
T KOG0018|consen 483 EGSRRSRKQEAVEALKRLFPGVYGRVIDLCQPTQKKYEIAVTVVLGKNMDAIIVDTEATARDCIQYLKEQRLEPMTFLPL 562 (1141)
T ss_pred ccHHHHHHHHHHHHHHHhCCCccchhhhcccccHHHHHHHHHHHHhcccceEEeccHHHHHHHHHHHHHhccCCccccch
Confidence 77777778899999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred CCccCCcchhhhhccCCCCCcceeeeeeccCcchHHHHHHHHhCCeEecCChHHHHhhhcccCCCccceEEeeCceeEec
Q psy16118 523 DYLQTKPLKERLRNIRDPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALDGTFYQK 602 (1070)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~tl~~~~~~~ 602 (1070)
+.+...++...++ .++|+..++|+|+|+ +.|++++.+++|+++||++++.|+.++|.. ..++..|+++|.+++.
T Consensus 563 d~i~v~~~~e~lr---~~~g~rlv~Dvi~ye-~e~eka~~~a~gn~Lvcds~e~Ar~l~y~~--~~r~k~valdGtl~~k 636 (1141)
T KOG0018|consen 563 DSIRVKPVNEKLR---ELGGVRLVIDVINYE-PEYEKAVQFACGNALVCDSVEDARDLAYGG--EIRFKVVALDGTLIHK 636 (1141)
T ss_pred hhhhcCccccccc---CcCCeEEEEEecCCC-HHHHHHHHHHhccceecCCHHHHHHhhhcc--cccceEEEeeeeEEec
Confidence 9998877655554 356789999999999 699999999999999999999999999977 5678899999999999
Q ss_pred CcccccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 603 SGIMSGGSLDLARKAKRWDDKEMGNLKAQKEKLSEELREAMKKSRKESELNTVQSTIKGLEIRLNYSRQDLQNTKSQIAK 682 (1070)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~ 682 (1070)
+|.|+||+++ .. |++..+..|......+..++.++... ...+......+..++..+.....++..+...+..
T Consensus 637 sGlmsGG~s~----~~-wdek~~~~L~~~k~rl~eel~ei~~~---~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~ 708 (1141)
T KOG0018|consen 637 SGLMSGGSSG----AK-WDEKEVDQLKEKKERLLEELKEIQKR---RKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQ 708 (1141)
T ss_pred cceecCCccC----CC-cCHHHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999976 33 99999999999999999999998773 2378888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH---
Q psy16118 683 LEAEIDALNARADATEPKIKAIEASMTARGDTISRKKEEMNSVEDIVFRDFCKSIGVSTIRQYEEAELRSQQERQKI--- 759 (1070)
Q Consensus 683 l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 759 (1070)
...++......+......+..+...+...+..+.+|+..++.+++.+|..++...|+. +..|++... .+.+...
T Consensus 709 ~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~-ir~Yee~~~--~~~~a~k~~e 785 (1141)
T KOG0018|consen 709 NELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVR-IREYEEREL--QQEFAKKRLE 785 (1141)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCee-eehHHHHHH--HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 888877655 2111111
Q ss_pred --------------HhhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 760 --------------CQDKDTKKNVARWERAVSDDEEELARAQGAEEKLAGEMRAEADKLENMRATRLTKKQAVDAMDEEI 825 (1070)
Q Consensus 760 --------------~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 825 (1070)
++..+...++..++..+..++.++..+......+...+.+. ..++. . -.......+.++
T Consensus 786 f~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~-k-----~k~~~~~~~~e~ 858 (1141)
T KOG0018|consen 786 FENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK-K-----NKSKFEKKEDEI 858 (1141)
T ss_pred HHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH-H-----HHHHHHHHHHHH
Confidence 12245566667777777777777777776666666555555 33333 1 155566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhhh----------hHH-----HHHHHH
Q psy16118 826 GKARREVGSIAKDIQAAQKSCVNLESKLEMKKSERHDILMNCKMNDIVLPMLRVQK----------YDR-----KLAKSI 890 (1070)
Q Consensus 826 ~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-----~l~~~l 890 (1070)
.+.......+..++..+...+..++..++.+..+..+++..|....+.+|.+.++. |+. .++.+|
T Consensus 859 ~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl~~I~vPl~~gs~~d~~~~ieidy~~L~~~y~L~~kl 938 (1141)
T KOG0018|consen 859 NEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCKLEDIEVPLSSGSMDDIVIGIEIDYSGLPREYKLQQKL 938 (1141)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCccccceecccccccccHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999888888654431 111 478999
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cc-c
Q psy16118 891 QEMTSRLQTIQAPNLRAMEKLEHAKENLMKTNEEFENARKRAKKAKANFDRIKKERYDKFTRCFEHVSNEIDGAG-SE-S 968 (1070)
Q Consensus 891 ~~l~~~l~~l~~~n~~a~~e~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~~i~~~~~~~f-~~-~ 968 (1070)
......|..+ .||+.|++.|+.++ +..+...++.+.+..+.+...+..+++.|+..|+.+|++|+.++..|| .+ .
T Consensus 939 ~e~~~~l~~~-~Pn~kA~~~~d~v~--~~~~~~EfE~ark~ak~ak~~F~~VK~~R~~~F~~~F~~va~~Id~IYK~Ltn 1015 (1141)
T KOG0018|consen 939 EEKQSVLNRI-APNLKALERLDEVR--FQEINEEFEAARKEAKKAKNAFNKVKKKRYERFMACFEHVADNIDRIYKELTN 1015 (1141)
T ss_pred HHHHHHHHHh-CcchHHHhhhhhHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999 68999999999998 999999999999999999999999999999999999999999999999 33 3
Q ss_pred CCCceeeccCCCCCCc----c---------ch----hhh---h-------hhhccccCCCeEEeecccccCChhhHHHHH
Q psy16118 969 VLPRPFLGPENPEEPL----T---------YR----VST---T-------IVSHRYHPAPFFVLDEIDAALDNTNIGKVA 1021 (1070)
Q Consensus 969 ~~~~~~l~~~~~~~~~----~---------~r----LSG---t-------~al~~~~~~Pf~ilDEvda~lD~~n~~~~~ 1021 (1070)
..|+|||++.|+++|| . || ||| | |||+.|+|||||||||||||||..|+++++
T Consensus 1016 t~g~AyL~~en~~EPyl~GIky~~~pP~KRFr~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kva 1095 (1141)
T KOG0018|consen 1016 TEGQAYLGLENPEEPYLDGIKYHCMPPGKRFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVA 1095 (1141)
T ss_pred cccceeecCCCCCcchhcCccccccCCccccCchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHH
Confidence 4599999999999998 1 34 999 5 999999999999999999999999999999
Q ss_pred HHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccceeeec
Q psy16118 1022 SYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTISSICF 1065 (1070)
Q Consensus 1022 ~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~v~~ 1065 (1070)
.||+ + ++.||||||+++.++.+||.|+||+.+..++|+|+.
T Consensus 1096 syIr--~-~~~Q~IvISLK~~~y~kadaLVGvyr~~~~~S~vlt 1136 (1141)
T KOG0018|consen 1096 SYIR--S-SNFQFIVISLKEEFYQKADALVGVYRDQEDCSKVLT 1136 (1141)
T ss_pred HHHh--c-CCceEEEEeccHHHhhhhhceeeeccCcccccceEE
Confidence 9998 5 789999999999999999999999998888999874
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.4e-84 Score=796.53 Aligned_cols=941 Identities=22% Similarity=0.378 Sum_probs=562.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHH
Q psy16118 39 ALKDDYERLKAEMIQAEEETNMSYLKKKGVVAERK----EAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDIKEL 114 (1070)
Q Consensus 39 ~~~~~y~~~~~~~~~~~~~~~~~~~~i~~l~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1070)
.-...|..++.+....+..+..++.++..+..+++ .|..+...+.+|..+..++..+...+.+.++.....++..+
T Consensus 165 aGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~ 244 (1163)
T COG1196 165 AGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEEL 244 (1163)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56668888899999999999999998887755555 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHH
Q psy16118 115 EDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKS 194 (1070)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 194 (1070)
...+..+...+..+...+......+..++..+..+...+..++..+..+...+..+...+..+...+..+..........
T Consensus 245 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~ 324 (1163)
T COG1196 245 EEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEER 324 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888888777777776655555555555555444444444444444444444444
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhhhHHhhhccchhhhhHHHHHHHHHHHHHHHHhH
Q psy16118 195 LVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAKKSL 274 (1070)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 274 (1070)
+..+...+......+.........+......+.. ...+++...
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-------------------------------------~~~e~~~~~ 367 (1163)
T COG1196 325 LEELKEKIEALKEELEERETLLEELEQLLAELEE-------------------------------------AKEELEEKL 367 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------------------------------------HHHHHHHHH
Confidence 3333333333333333222111111111111111 000000000
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcccChHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhH
Q psy16118 275 VEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATKRAGKILQQLDTINREQKGDQ 354 (1070)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 354 (1070)
.. ........+. .+......+......+..++..++.++..+.
T Consensus 368 ~~----------~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~ 410 (1163)
T COG1196 368 SA----------LLEELEELFE---------------------------ALREELAELEAELAEIRNELEELKREIESLE 410 (1163)
T ss_pred HH----------HhhhHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000000001 1111111111112222222222333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy16118 355 DKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEEL 434 (1070)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l 434 (1070)
..+..+...+..+..++..+..++..+...+..+...+..+...+..+...+..++..+..++..+..+...+..+...+
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 490 (1163)
T COG1196 411 ERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARL 490 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhcCCcceecccccccchhhHHHHHHHHhccCCCeEEeCCHHHHHHHHHHHhhcCC
Q psy16118 435 GDAKTDKHEDTRRKKKQELVENFKKAYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQL 514 (1070)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~~~~~L~~~~~ 514 (1070)
..+...... ......++.+....++|++|++.+++. ++++|..||++++|+.++++||++..++..|+.+|+...+
T Consensus 491 ~~l~~~~~~---~~~~~~~~~~~~~~~~Gv~G~v~~li~-v~~~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk~~~~ 566 (1163)
T COG1196 491 DRLEAEQRA---SQGVRAVLEALESGLPGVYGPVAELIK-VKEKYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKA 566 (1163)
T ss_pred HHHHHHhhh---hhhHHHHHHHHhccCCCccchHHHhcC-cChHHHHHHHHHcccccCCeeeCChHHHHHHHHHHhhcCC
Confidence 222211111 001123445555558999999999998 5679999999999999999999999999999999999999
Q ss_pred CCcceecCCCccCCcchhhhhccCCCCCcceeeeeeccCcchHHHHHHHHhCCeEecCChHHHHhhhcccCCCccceEEe
Q psy16118 515 DPETFLPIDYLQTKPLKERLRNIRDPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVA 594 (1070)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~t 594 (1070)
|+++|+|++.+......... ..++.+++++++|++| +.|.+++.+++|+++||++++.|..++... ..++++||
T Consensus 567 gr~tflpl~~i~~~~~~~~~---~~~g~~~~a~dli~~d-~~~~~~~~~~l~~t~Iv~~l~~A~~l~~~~--~~~~riVT 640 (1163)
T COG1196 567 GRATFLPLDRIKPLRSLKSD---AAPGFLGLASDLIDFD-PKYEPAVRFVLGDTLVVDDLEQARRLARKL--RIKYRIVT 640 (1163)
T ss_pred CccccCchhhhccccccccc---cccchhHHHHHHhcCC-HHHHHHHHHHhCCeEEecCHHHHHHHHHhc--CCCceEEe
Confidence 99999999998754321111 1245677899999999 699999999999999999999999998866 45678999
Q ss_pred eCceeEecCcccccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHh-chhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 595 LDGTFYQKSGIMSGGSLDLARKAKRWDDKEMGNLKAQKEKLSEELREAMKK-SRKESELNTVQSTIKGLEIRLNYSRQDL 673 (1070)
Q Consensus 595 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~l~~~~~~l 673 (1070)
++|+++.++|+++||+...... .....++..+..++..+...+...... ..+...+..+...+..+...+..+..++
T Consensus 641 l~G~~~~~~G~~tGG~~~~~~~--~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1163)
T COG1196 641 LDGDLVEPSGSITGGSRNKRSS--LAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718 (1163)
T ss_pred cCCcEEeCCeeeecCCccccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999994322111 000112333444444444444433222 2223333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhC-C--------CchHH
Q psy16118 674 QNTKSQIAKLEAEIDALNARADATEPKIKAIEASMTARGDTISRKKEEMNSVEDIVFRDFCKSIG-V--------STIRQ 744 (1070)
Q Consensus 674 ~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~-~--------~~~~~ 744 (1070)
..+...+..+......+...+..+...+..+...+..+..++..+...+..+.... ..+..... . .....
T Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~ 797 (1163)
T COG1196 719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL-AKLKEEIEELEEKRQALQEELEE 797 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333332221 00000000 0 00111
Q ss_pred HHHHHHHHHHHHHHHHhh-HHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 745 YEEAELRSQQERQKICQD-KDTKKNVARWERAVSDDEEELARAQGAEEKLAGEMRAEADKLENMRATRLTKKQAVDAMDE 823 (1070)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 823 (1070)
+...+......+...... .........+...+..+..++..+...+..+...+..+...+..+...+..+...+..+..
T Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 877 (1163)
T COG1196 798 LEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELED 877 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111111111 1122222333333333333333333344444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccc-------cchhhhhHHHHHHHHHHHHHH
Q psy16118 824 EIGKARREVGSIAKDIQAAQKSCVNLESKLEMKKSERHDILMNCKMNDIVLP-------MLRVQKYDRKLAKSIQEMTSR 896 (1070)
Q Consensus 824 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~l~~l~~~ 896 (1070)
.+.........+...+..+...+..+...+..+...+..+...+......++ ......+...+...+..+..+
T Consensus 878 ~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~le~~ 957 (1163)
T COG1196 878 ELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEE 957 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444433332111110000000 000000111578999999999
Q ss_pred HhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccCCCceee
Q psy16118 897 LQTIQAPNLRAMEKLEHAKENLMKTNEEFENARKRAKKAKANFDRIKKERYDKFTRCFEHVSNEIDGAG-SESVLPRPFL 975 (1070)
Q Consensus 897 l~~l~~~n~~a~~e~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~~i~~~~~~~f-~~~~~~~~~l 975 (1070)
+..+|+||+.|+++|+.+..+|+++..+++++...+..+.+.|..++..++..|+.+|..|+.+|..+| .+||||.|.|
T Consensus 958 i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~GG~a~L 1037 (1163)
T COG1196 958 IEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFGGGTAEL 1037 (1163)
T ss_pred HHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 8899999999
Q ss_pred ccCCCCCCcc----c---------h----hhh---h-------hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhc
Q psy16118 976 GPENPEEPLT----Y---------R----VST---T-------IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKT 1028 (1070)
Q Consensus 976 ~~~~~~~~~~----~---------r----LSG---t-------~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~ 1028 (1070)
.+.+|+||++ + . ||| | ||||+++|||||||||||||||++|+.+|+.||++++
T Consensus 1038 ~l~~~dd~l~~Giei~a~ppgK~~~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s 1117 (1163)
T COG1196 1038 ELTEPDDPLTAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS 1117 (1163)
T ss_pred EeCCCCchhhcCcEEEEECCCCCccchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC
Confidence 9999988871 1 1 999 3 9999999999999999999999999999999999999
Q ss_pred CCCceEEEEecCcchHhhcchheeeccCCccceeeeccc
Q psy16118 1029 QDSLQTIVISLKEEFFSHADSLVGICPGSVTISSICFGH 1067 (1070)
Q Consensus 1029 ~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~v~~~~ 1067 (1070)
.++|||||||++.||+.||.+|||||.++|||+||...
T Consensus 1118 -~~sQFIvIThr~~~m~~ad~l~GVtm~~~GvS~vvsv~ 1155 (1163)
T COG1196 1118 -KETQFIVITHRKGTMEAADRLVGVTMQEKGVSKVVSVD 1155 (1163)
T ss_pred -cCCeEEEEEcChHHHHHHHHHeeeEeecCCceEEEEee
Confidence 99999999999999999999999999989999998654
No 3
>KOG0996|consensus
Probab=100.00 E-value=2e-74 Score=635.21 Aligned_cols=662 Identities=21% Similarity=0.370 Sum_probs=419.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-----H
Q psy16118 385 IDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEELGDAKTDKHEDTRRKKKQELVENFK-----K 459 (1070)
Q Consensus 385 ~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~-----~ 459 (1070)
+.+....+..+...+..+..++.+....+..+..+...+...+..+..++..+........ ....++++|. .
T Consensus 537 ~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~---s~~kVl~al~r~kesG 613 (1293)
T KOG0996|consen 537 LKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSR---SRNKVLDALMRLKESG 613 (1293)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHcC
Confidence 3333333333344444444444444444444444444444444444444444333222211 1234455554 3
Q ss_pred hcCCcceecccccccchhhHHHHHHHHhccCCCeEEeCCHHHHHHHHHHHhhcCCCCcceecCCCccCCcchhhhhccCC
Q psy16118 460 AYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTKPLKERLRNIRD 539 (1070)
Q Consensus 460 ~~~~~~g~~~~~~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (1070)
.+||++|+++++.. ++++|..||.+ ++..|+++||++...+..||.+|+..+.|++||+++|.+.... ..+.++..
T Consensus 614 ~i~Gf~GRLGDLg~-Id~kYDvAIsT-ac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~--~~l~~i~t 689 (1293)
T KOG0996|consen 614 RIPGFYGRLGDLGA-IDEKYDVAIST-ACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQ--KKLAPITT 689 (1293)
T ss_pred CCCccccccccccc-cchHHHHHHHH-hccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhh--hccCCCCC
Confidence 48999999999985 89999999998 5568999999999999999999999999999999999886322 11222334
Q ss_pred CCCcceeeeeeccCcchHHHHHHHHhCCeEecCChHHHHhhhcccCCCccceEEeeCceeEecCcccccCCcccccc---
Q psy16118 540 PKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALDGTFYQKSGIMSGGSLDLARK--- 616 (1070)
Q Consensus 540 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~~~~~~~~--- 616 (1070)
|.+++.++|+|.|.++.+++++.+.+++++||++++.|.++++.. ..++++||++|.+++++|+|+||.....+.
T Consensus 690 penvPRLfDLv~~~d~~~r~aFYfaLrdtLV~d~LeQAtRiaygk--~rr~RVvTL~G~lIe~SGtmtGGG~~v~~g~mg 767 (1293)
T KOG0996|consen 690 PENVPRLFDLVKCKDEKFRPAFYFALRDTLVADNLEQATRIAYGK--DRRWRVVTLDGSLIEKSGTMTGGGKKVKGGRMG 767 (1293)
T ss_pred CCCcchHhhhhccCCHHHHHHHHHHHhhhhhhcCHHHHHHHhhcC--CCceEEEEecceeecccccccCCCCcCCCCCCC
Confidence 678899999999998999999999999999999999999999976 556889999999999999999987543322
Q ss_pred ----cccCCHHHHHHHHHHHHHHHHHHHHHHHh-chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 617 ----AKRWDDKEMGNLKAQKEKLSEELREAMKK-SRKESELNTVQSTIKGLEIRLNYSRQDLQNTKSQIAKLEAEIDALN 691 (1070)
Q Consensus 617 ----~~~~~~~~l~~l~~~~~~l~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~l~~~~~~~~ 691 (1070)
....+......+..++.........+... ..++..+..++..+..++.++..+......+-..+..+...+..++
T Consensus 768 ~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E 847 (1293)
T KOG0996|consen 768 TSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELE 847 (1293)
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223345666666666666666555443 3455566666666666666666666666655555555555555555
Q ss_pred HHhhhhhh---HHHHHHHHHHHHHHHHHHHH------HHHhhhhhHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH--
Q psy16118 692 ARADATEP---KIKAIEASMTARGDTISRKK------EEMNSVEDIVFRDFCKSIGVSTIRQYEEAELRSQQERQKIC-- 760 (1070)
Q Consensus 692 ~~~~~l~~---~~~~l~~~~~~l~~~l~~l~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 760 (1070)
........ ++..++..+..+..++++++ .++..++..+. .++....+.-..........++...
T Consensus 848 ~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~-----~i~~e~~q~qk~kv~~~~~~~~~l~~~ 922 (1293)
T KOG0996|consen 848 AAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKID-----EIGGEKVQAQKDKVEKINEQLDKLEAD 922 (1293)
T ss_pred HHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----HhhchhhHHhHHHHHHHHHHHHHHHHH
Confidence 44332222 22223333444444444442 22222222220 1111111111112222222222221
Q ss_pred ------------hh-HHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 761 ------------QD-KDTKKNVARWERAVSDDEEELARAQGAEEKLAGEMRAEADKLENMRATRLTKKQAVDAMDEEIGK 827 (1070)
Q Consensus 761 ------------~~-~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 827 (1070)
+. ..++..+..++..+.....++..|...+..+.....+....+.+..+.+..+...+..+...++.
T Consensus 923 i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~ 1002 (1293)
T KOG0996|consen 923 IAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELEN 1002 (1293)
T ss_pred HHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 22233333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccCc-----cccc-------chhhhhHHHHHHHHHH
Q psy16118 828 ARREVGSIAKDIQAAQKSCVNLESKLEMKKSERHDILMNC---KMNDI-----VLPM-------LRVQKYDRKLAKSIQE 892 (1070)
Q Consensus 828 ~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~-----~~~~-------~~~~~~~~~l~~~l~~ 892 (1070)
......++....-.+...+......+..+......+.... ....+ .++. ..+...+..+...+..
T Consensus 1003 i~k~~~~lk~~rId~~~K~e~~~~~l~e~~~~~~~~~k~~~~l~~~~~tE~~~~~~~~~~~~Eeleae~~~~~i~e~i~~ 1082 (1293)
T KOG0996|consen 1003 IKKSENELKAERIDIENKLEAINGELNEIESKIKQPEKELKKLSLCNMTETRPQIELDVESPEELEAEMLEDNINEKIAL 1082 (1293)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhHHHhhCccccccchhhccccccccCChHHHHhhhcHhhHHHHHHH
Confidence 3333333332111123333333333333333222222111 01111 0000 0011112235567888
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccCCC
Q psy16118 893 MTSRLQTIQAPNLRAMEKLEHAKENLMKTNEEFENARKRAKKAKANFDRIKKERYDKFTRCFEHVSNEIDGAG-SESVLP 971 (1070)
Q Consensus 893 l~~~l~~l~~~n~~a~~e~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~~i~~~~~~~f-~~~~~~ 971 (1070)
|+.++..++.||.+++.+|......|..-...++.....++...+.+..+...|.+.|+..|.-|..++..+| ....||
T Consensus 1083 lE~~~~~l~~vd~~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~RldEFm~gf~~Is~kLkemYQmIT~GG 1162 (1293)
T KOG0996|consen 1083 LEKRVEELREVDLGVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEELRKRRLDEFMAGFNIISMKLKEMYQMITLGG 1162 (1293)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999988999999999999999999999999999999999999999999999999999999999999999 667899
Q ss_pred ceeeccCCCCCCc----cc---------h----hhh---h-------hhhccccCCCeEEeecccccCChhhHHHHHHHH
Q psy16118 972 RPFLGPENPEEPL----TY---------R----VST---T-------IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYI 1024 (1070)
Q Consensus 972 ~~~l~~~~~~~~~----~~---------r----LSG---t-------~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l 1024 (1070)
+|.|.++|..||| .| + ||| | |||++|+|+|||||||||||||-.||..|+.||
T Consensus 1163 dAeLElVDslDPFseGV~FSVrPpKKSWK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYI 1242 (1293)
T KOG0996|consen 1163 DAELELVDSLDPFSEGVMFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYI 1242 (1293)
T ss_pred cceeEeeccCCCcccCceEEeeCchhhhhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHH
Confidence 9999999999998 22 2 999 4 999999999999999999999999999999999
Q ss_pred HHhcCCCceEEEEecCcchHhhcchheeeccCCcccee
Q psy16118 1025 VTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTISS 1062 (1070)
Q Consensus 1025 ~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~ 1062 (1070)
++.+ ...||||||+|..||+.|++|+||++- +|+|+
T Consensus 1243 kErT-kNAQFIIISLRnnMFELa~rLvGIYKt-dn~Tk 1278 (1293)
T KOG0996|consen 1243 KERT-KNAQFIIISLRNNMFELANRLVGIYKT-DNCTK 1278 (1293)
T ss_pred HHhc-cCCeEEEEEehhhHHHHHhhheeeEee-cCccc
Confidence 9999 999999999999999999999999994 56665
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=100.00 E-value=3.9e-69 Score=693.26 Aligned_cols=590 Identities=19% Similarity=0.318 Sum_probs=374.7
Q ss_pred hcCCcceecccccccchhhHHHHHHHHhccCCCeEEeCCHHHHHHHHHHHhhcCCCCcceecCCCccCCcchhhhhccCC
Q psy16118 460 AYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTKPLKERLRNIRD 539 (1070)
Q Consensus 460 ~~~~~~g~~~~~~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (1070)
.++|++|.+.+++. +++.|..||++++|+.++++||++..++..|+.+|+..+.|+++|+|++.+.....+.. ++.
T Consensus 519 ~~~g~~g~l~dli~-v~~~y~~Aie~~lg~~l~~ivv~~~~~a~~~i~~l~~~~~gr~tflpl~~~~~~~~~~~---~~~ 594 (1164)
T TIGR02169 519 SIQGVHGTVAQLGS-VGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLS---ILS 594 (1164)
T ss_pred CCCCceecHHHhcC-cCHHHHHHHHHHhhhhhCCEEECCHHHHHHHHHHHHhcCCCCeeeccHhhcCCCCCCcc---ccc
Confidence 36899999999998 67899999999999999999999999999999999999999999999987764221111 111
Q ss_pred -CCCcceeeeeeccCcchHHHHHHHHhCCeEecCChHHHHhhhcccCCCccceEEeeCceeEecCcccccCCccccc--c
Q psy16118 540 -PKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALDGTFYQKSGIMSGGSLDLAR--K 616 (1070)
Q Consensus 540 -~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~~~~~~~--~ 616 (1070)
++.+++++++|.|+ +.+.+++.+++|+++||++++.|..++. .++|||++|+++.++|.|+||+..... .
T Consensus 595 ~~~~~~~~~~~i~~~-~~~~~~~~~~lg~~~v~~~l~~a~~~~~------~~~~vTldG~~~~~~G~~tgG~~~~~~~~~ 667 (1164)
T TIGR02169 595 EDGVIGFAVDLVEFD-PKYEPAFKYVFGDTLVVEDIEAARRLMG------KYRMVTLEGELFEKSGAMTGGSRAPRGGIL 667 (1164)
T ss_pred CCCchHHHHHHccCc-HHHHHHHHHHCCCeEEEcCHHHHHHHhc------CCcEEEeCceeEcCCcCccCCCCCCCCCcc
Confidence 24455778999998 7999999999999999999999988863 256999999999999999999732111 1
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHh-chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16118 617 AKRWDDKEMGNLKAQKEKLSEELREAMKK-SRKESELNTVQSTIKGLEIRLNYSRQDLQNTKSQIAKLEAEIDALNARAD 695 (1070)
Q Consensus 617 ~~~~~~~~l~~l~~~~~~l~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~ 695 (1070)
...|....+..+..++..+...+..+... ..+...+..+...+..+...+..+...+..+...+..+...+..+...+.
T Consensus 668 ~~~~~~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~ 747 (1164)
T TIGR02169 668 FSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS 747 (1164)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222346667777777777666665443 23344444444444444444444444443343344333333333333333
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhC---C----CchHHHHHHHHHHHHHHHHHHhh-HHhHH
Q psy16118 696 ATEPKIKAIEASMTARGDTISRKKEEMNSVEDIVFRDFCKSIG---V----STIRQYEEAELRSQQERQKICQD-KDTKK 767 (1070)
Q Consensus 696 ~l~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 767 (1070)
.+...+..+...+..+...+..+...+..+...+.. ...... . ..+..+..........+...... ..+..
T Consensus 748 ~~~~~~~~~~~el~~l~~~i~~l~~~i~~l~~el~~-l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~ 826 (1164)
T TIGR02169 748 SLEQEIENVKSELKELEARIEELEEDLHKLEEALND-LEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333322210 000000 0 00111122222222222111111 11222
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 768 NVARWERAVSDDEEELARAQGA-------EEKLAGEMRAEADKLENMRATRLTKKQAVDAMDEEIGKARREVGSIAKDIQ 840 (1070)
Q Consensus 768 ~~~~l~~~~~~l~~~~~~l~~~-------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 840 (1070)
.+..++..+..+...+..+... +..+...+..+...+..+...+..+...+..+...+..+...+..+...+.
T Consensus 827 ~~~~l~~e~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~ 906 (1164)
T TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIE 906 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222222222 222222222233333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCc------ccccchhhhhHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHH
Q psy16118 841 AAQKSCVNLESKLEMKKSERHDILMNCKMNDI------VLPMLRVQKYDRKLAKSIQEMTSRLQTIQAPNLRAMEKLEHA 914 (1070)
Q Consensus 841 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~n~~a~~e~~~~ 914 (1070)
.+...+..+...+..+...+..+......... ..+. ...... .+...+..+..++..+|++|+.|+++|+.+
T Consensus 907 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~ 984 (1164)
T TIGR02169 907 ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPE-EELSLE-DVQAELQRVEEEIRALEPVNMLAIQEYEEV 984 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-ccCCHH-HHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 33333333333333333222222111100000 0000 000112 688999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccCCCceeeccCCCCCCc--cc-----
Q psy16118 915 KENLMKTNEEFENARKRAKKAKANFDRIKKERYDKFTRCFEHVSNEIDGAG-SESVLPRPFLGPENPEEPL--TY----- 986 (1070)
Q Consensus 915 ~~~~~~l~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~~i~~~~~~~f-~~~~~~~~~l~~~~~~~~~--~~----- 986 (1070)
..+|.++..+++++......+...|..++..+...|..+|+.|+.+|..+| .++ ||.+.|.+.++++|+ ++
T Consensus 985 ~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~~~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~ 1063 (1164)
T TIGR02169 985 LKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINENFNEIFAELS-GGTGELILENPDDPFAGGLELSAK 1063 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCeEEEEecCCCCcccCCeEEEEE
Confidence 999999999999999999999999999999999999999999999999999 566 888989887766665 11
Q ss_pred ---------h-hhh---h-------hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhh
Q psy16118 987 ---------R-VST---T-------IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSH 1046 (1070)
Q Consensus 987 ---------r-LSG---t-------~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ 1046 (1070)
. ||| + ||+|.+.|+|||||||||+|||+.|+.+|+.+|..++ ..+|||||||++.+|..
T Consensus 1064 ~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~-~~~~~i~~t~~~~~~~~ 1142 (1164)
T TIGR02169 1064 PKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKA-GEAQFIVVSLRSPMIEY 1142 (1164)
T ss_pred cCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhc-CCCeEEEEECcHHHHHh
Confidence 1 999 2 9999999999999999999999999999999999998 88999999999999999
Q ss_pred cchheeeccCCccceeeec
Q psy16118 1047 ADSLVGICPGSVTISSICF 1065 (1070)
Q Consensus 1047 ad~l~gVt~~~~gvs~v~~ 1065 (1070)
||.+|||||.++|||+||.
T Consensus 1143 ~d~~~~~~~~~~g~S~~~~ 1161 (1164)
T TIGR02169 1143 ADRAIGVTMRRNGESQVFG 1161 (1164)
T ss_pred cceeEeEEEecCCeeEEEe
Confidence 9999999998899999985
No 5
>KOG0964|consensus
Probab=100.00 E-value=3e-69 Score=580.21 Aligned_cols=936 Identities=17% Similarity=0.254 Sum_probs=531.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHH
Q psy16118 39 ALKDDYERLKAEMIQAEEETNMSYLKKKGV----VAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDIKEL 114 (1070)
Q Consensus 39 ~~~~~y~~~~~~~~~~~~~~~~~~~~i~~l----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1070)
+-...|+.++.+...+.+.+......|..+ .+.+..+....++..+|+++....+.++..++-..+.....++..+
T Consensus 163 aGtrvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~l 242 (1200)
T KOG0964|consen 163 AGTRVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERL 242 (1200)
T ss_pred cccchhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHH
Confidence 566789999999999999999988888766 4445558889999999999999888777776666666666777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHH
Q psy16118 115 EDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKS 194 (1070)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 194 (1070)
.......-..-......+......+..+..++.++...+..+..+...+...-..+-.....+.-+++.+..++..-...
T Consensus 243 e~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~ 322 (1200)
T KOG0964|consen 243 EEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQ 322 (1200)
T ss_pred HHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhh
Confidence 66655555555555555555555555555444444444444443333333332222222333333333343333333333
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhhhHHhhhccchhhhhHHHHHHHHHHHHHHHHhH
Q psy16118 195 LVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAKKSL 274 (1070)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 274 (1070)
.......+..+...+.+.+.++......+..+.. .-..+...+..++.
T Consensus 323 r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~------------------------------ee~~~~~rl~~l~~-- 370 (1200)
T KOG0964|consen 323 RNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVD------------------------------EEKRLKKRLAKLEQ-- 370 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh------------------------------HHHHHHHHHHHHHH--
Confidence 3222233333333333333333333333322222 11111112211111
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcccChHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhH
Q psy16118 275 VEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATKRAGKILQQLDTINREQKGDQ 354 (1070)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 354 (1070)
.. ..+-........+......-..+.+.+..+.. -|.........++
T Consensus 371 -------------------~~-------~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~-------~i~~~ke~e~~lq 417 (1200)
T KOG0964|consen 371 -------------------KQ-------RDLLAKQGRYSQFSSKEERDKWIRSEIEKLKR-------GINDTKEQENILQ 417 (1200)
T ss_pred -------------------HH-------HHHHHhhccccccCcHHHHHHHHHHHHHHHHH-------HHhhhhhHHHHHH
Confidence 11 11110001111122112222223333333222 3333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy16118 355 DKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEEL 434 (1070)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l 434 (1070)
.++..++..+...-.++..+...+.+...++.++.....++..+++++......+..+-..++..+..+...+...+..+
T Consensus 418 ~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L 497 (1200)
T KOG0964|consen 418 KEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNL 497 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555555556666666666666666666666777776777777777777777666666
Q ss_pred hhhhhh-hhHHHHHHHHHHHHHHHHHhcCCcceecccccccchhhHHHHHHHHhccCCCeEEeCCHHHHHHHHHHHhhcC
Q psy16118 435 GDAKTD-KHEDTRRKKKQELVENFKKAYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQ 513 (1070)
Q Consensus 435 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~~~~~L~~~~ 513 (1070)
...... ...|. .....+...++ ..|++|++.+++. ||+.|..|+++..|+.|+++||+++..+..++..+..-+
T Consensus 498 ~~~~~r~v~nGi--~~v~~I~e~~k--~ngv~G~v~eL~~-v~~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~ 572 (1200)
T KOG0964|consen 498 RATMNRSVANGI--DSVRKIKEELK--PNGVFGTVYELIK-VPNKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMK 572 (1200)
T ss_pred HHhccchhhhhh--HHHHHHHHHhc--ccccceehhhhhc-CCHHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhcc
Confidence 543221 11111 11223333333 5689999999997 899999999999999999999999999999999999999
Q ss_pred CCCcceecCCCccCCcchhhhhccCCCCCcceeeeeeccCcchHHHHHHHHhCCeEecCChHHHHhhhcccCCCccceEE
Q psy16118 514 LDPETFLPIDYLQTKPLKERLRNIRDPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAV 593 (1070)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 593 (1070)
+|++||+|++.+.++.. .+|..+++.|++..+.|+ +.|.+++.+++|.++||.+++.|...++.. ...|+
T Consensus 573 ~GrVTF~PLNrl~~r~v-----~yp~~sdaiPli~kl~y~-p~fdka~k~Vfgktivcrdl~qa~~~ak~~----~ln~I 642 (1200)
T KOG0964|consen 573 GGRVTFMPLNRLKARDV-----EYPKDSDAIPLISKLRYE-PQFDKALKHVFGKTIVCRDLEQALRLAKKH----ELNCI 642 (1200)
T ss_pred CCeeEEeecccCchhhc-----cCCCCCCccchHHHhCcc-hhhHHHHHHHhCceEEeccHHHHHHHHHhc----CCCeE
Confidence 99999999999986442 123345678999999999 799999999999999999999999988844 45699
Q ss_pred eeCceeEecCcccccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHh-chhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy16118 594 ALDGTFYQKSGIMSGGSLDLARKAKRWDDKEMGNLKAQKEKLSEELREAMKK-SRKESELNTVQSTIKGLEIRLNYSRQD 672 (1070)
Q Consensus 594 tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~l~~~~~~ 672 (1070)
|++|+.++..|+++||+.+..+.- --....+.....++..+...+...... ......+.++...++.++..+......
T Consensus 643 Tl~GDqvskkG~lTgGy~D~krsr-Le~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~ 721 (1200)
T KOG0964|consen 643 TLSGDQVSKKGVLTGGYEDQKRSR-LELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKRE 721 (1200)
T ss_pred EeccceecccCCccccchhhhhhH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999997542210 000012222333333333333332111 112233333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCCchHHH---HHHH
Q psy16118 673 LQNTKSQIAKLEAEIDALNARADATEPKIKAIEASMTARGDTISRKKEEMNSVEDIVFRDFCKSIGVSTIRQY---EEAE 749 (1070)
Q Consensus 673 l~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~ 749 (1070)
...+..++..+..+...++ ..+......+..+...+..+.......+.++...+.+.++......+ ...+
T Consensus 722 ~~~l~~e~~~~k~e~~~v~-------~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI 794 (1200)
T KOG0964|consen 722 HEKLKRELNTIKGEKSRVQ-------ESLEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEI 794 (1200)
T ss_pred HHHHHHHHHHhhhHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHH
Confidence 3333333333333333333 33333333344444444444444444444444444444443222221 1111
Q ss_pred HHHHHHHHHHHhh-HHhHHHHHHHHHHhH-HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 750 LRSQQERQKICQD-KDTKKNVARWERAVS-DDEEELARAQGAEEKLA-----GEMRAEADKLENMRATRLTKKQAVDAMD 822 (1070)
Q Consensus 750 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~l~~~~~~l~~~~~~~~-----~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 822 (1070)
..+...+...... -.+...+..++..+. .+..+...+...+..+. ..+......+..+...+.....++..++
T Consensus 795 ~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~ 874 (1200)
T KOG0964|consen 795 NKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQ 874 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 1111111111000 111111222221111 11111122211111111 0111111112222222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHh---hcc--ccC-cccccchhhhh----HHHH
Q psy16118 823 EEIGKARREVGSIAKDIQAAQKSC------VNLESKLEMKKSERHDILM---NCK--MND-IVLPMLRVQKY----DRKL 886 (1070)
Q Consensus 823 ~~~~~~~~~~~~l~~~~~~l~~~~------~~~~~~l~~~~~~~~~~~~---~~~--~~~-~~~~~~~~~~~----~~~l 886 (1070)
..+......+.++...+..+...- ..+...++.+......+.. .|. +.. -.+|......| ..++
T Consensus 875 ~~i~~~~a~~~~~~~~lE~~~~lek~~~~~~~~dKe~Ek~~~rk~~Ll~KreE~~ekIr~lG~Lp~daf~ky~~~~~~el 954 (1200)
T KOG0964|consen 875 DSIDKKKAEIKEIKKELEKAKNLEKEKKDNINFDKELEKLVRRKHMLLKKREECCEKIRELGVLPEDAFEKYQDKKSKEL 954 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHhccCCHHHH
Confidence 222222222222222221111100 0111122222211111111 111 100 01221111122 2278
Q ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-
Q psy16118 887 AKSIQEMTSRLQTIQAPNLRAMEKLEHAKENLMKTNEEFENARKRAKKAKANFDRIKKERYDKFTRCFEHVSNEIDGAG- 965 (1070)
Q Consensus 887 ~~~l~~l~~~l~~l~~~n~~a~~e~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~~i~~~~~~~f- 965 (1070)
..++.++..++..|++||..|+++|....++.+.|....+++....+.|.+.|..++.++.+....+|..|..+|..+|
T Consensus 955 ~kkL~~~neelk~ys~VNKkAldQf~nfseQre~L~~R~eELd~s~~sI~eLi~vLdqrK~eai~~TFkqV~knFsevF~ 1034 (1200)
T KOG0964|consen 955 MKKLHRCNEELKGYSNVNKKALDQFVNFSEQRESLKKRQEELDRSKDSILELITVLDQRKYEAIDLTFKQVKKNFSEVFS 1034 (1200)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeeccC--C----C------CCC-----------c-------cc-------h----hhh---h-------hhh
Q psy16118 966 SESVLPRPFLGPE--N----P------EEP-----------L-------TY-------R----VST---T-------IVS 994 (1070)
Q Consensus 966 ~~~~~~~~~l~~~--~----~------~~~-----------~-------~~-------r----LSG---t-------~al 994 (1070)
.+.|+|.|.+.+. + . .+. | +| + ||| | |||
T Consensus 1035 ~LVp~G~a~iim~k~d~~~d~~e~d~~~~~~s~~~~~sv~~ytGIsI~VSFnskq~E~~~m~QLSGGQKsvvALaLIFaI 1114 (1200)
T KOG0964|consen 1035 RLVPGGTALIIMRKRDNANDHDEDDGDMDGESNEGKDSVEMYTGISIKVSFNSKQGETLEMEQLSGGQKSVVALALIFAI 1114 (1200)
T ss_pred HhCCCCceeehhhccccccccccccccccccccccccchhhccceeEEEEeecCccHHHHHHHhcCchHHHHHHHHHHHH
Confidence 7888998855432 1 0 000 0 12 2 999 3 999
Q ss_pred ccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccceeee
Q psy16118 995 HRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTISSIC 1064 (1070)
Q Consensus 995 ~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~v~ 1064 (1070)
+++.|||||+|||||||||+..+.+|+.||+++| .++|||+.|+||.+..+||.+|||.-. +-||.|.
T Consensus 1115 QrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS-~~aQFI~TTFRpEll~vAdKfygV~f~-nKvS~V~ 1182 (1200)
T KOG0964|consen 1115 QRCDPAPFYLFDEIDAALDAQYRTAVADLIKELS-DSAQFITTTFRPELLSVADKFYGVKFE-NKVSTVD 1182 (1200)
T ss_pred HhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHh-hccceEeecccHHHHHHHHhhhceeec-cccccce
Confidence 9999999999999999999999999999999999 999999999999999999999999874 6788764
No 6
>KOG0933|consensus
Probab=100.00 E-value=1.8e-63 Score=538.80 Aligned_cols=921 Identities=18% Similarity=0.277 Sum_probs=486.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHH
Q psy16118 39 ALKDDYERLKAEMIQAEEETNMSYLKKKGV-----VAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDIKE 113 (1070)
Q Consensus 39 ~~~~~y~~~~~~~~~~~~~~~~~~~~i~~l-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (1070)
+-..-|+.++........+-...+..++.+ ...+..+......|..|+.....++.+...+..+++.........
T Consensus 169 AGTrmye~kKe~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~~ 248 (1174)
T KOG0933|consen 169 AGTRMYENKKEAAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSRICIAYEYLQAEEKRKN 248 (1174)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888888888888766 344556888888899999888888888887777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHH
Q psy16118 114 LEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKK 193 (1070)
Q Consensus 114 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 193 (1070)
+..++.+....+..+...+......+..+..++.++..+... .+......+...+..+...+-....
T Consensus 249 ~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~-------------em~~~~~~L~~~~~~~~~~~tr~~t 315 (1174)
T KOG0933|consen 249 SAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDA-------------EMGGEVKALEDKLDSLQNEITREET 315 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------------HhchhhhhHHHHHHHHHHHHHHHHH
Confidence 777777777777766666666555555555444333322111 0111111122222222222222222
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhhhHHhhhccchhhhhHHHHHHHHHHHHHHHHh
Q psy16118 194 SLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAKKS 273 (1070)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 273 (1070)
.+......+......++++...+.+....+..-.. .+ ... ......+...
T Consensus 316 ~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~----------------~~-------~~~-------~~~~~~~ke~ 365 (1174)
T KOG0933|consen 316 SLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEK----------------AM-------AKV-------EEGYEKLKEA 365 (1174)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHH----------------HH-------hhh-------hhhHHHHHHH
Confidence 22222222222222222222222221111111111 00 000 0011111111
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcccChHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhh
Q psy16118 274 LVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATKRAGKILQQLDTINREQKGD 353 (1070)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 353 (1070)
...... .++..+.....+-.- .......-..+..++..+. ..+..+...+...
T Consensus 366 ~~~~s~--------------~~e~~e~~~eslt~G------~Ss~~~~e~~l~~ql~~aK-------~~~~~~~t~~k~a 418 (1174)
T KOG0933|consen 366 FQEDSK--------------LLEKAEELVESLTAG------LSSNEDEEKTLEDQLRDAK-------ITLSEASTEIKQA 418 (1174)
T ss_pred HHHHHH--------------HHHHHHHHHHHHhcc------cccCccchhhHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 111111 111111111111111 0000011122233333322 2333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy16118 354 QDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNK---KLKEELNSDVGSSKNRVQELQKELEQV 430 (1070)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~---~~~~~l~~~~~~~~~~~~~l~~~~~~~ 430 (1070)
...+..+..++...+.+......+.......++.++..+..++.++..+. .....++.....+...+..|...+..+
T Consensus 419 ~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l 498 (1174)
T KOG0933|consen 419 KLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIGRLKDELDRL 498 (1174)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444343333333333333344444444444444433331 222233334444444444444444444
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhcCCcceecccccccchhhHHHHHHHHhccCCCeEEeCCHHHHHHHHHHHh
Q psy16118 431 IEELGDAKTDKHEDTRRKKKQELVENFKKAYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLK 510 (1070)
Q Consensus 431 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~~~~~L~ 510 (1070)
.+++.+....+...... ++ ...|.|.+..++..++..|..|++.++|+.|.++||++...+..+++.-
T Consensus 499 ~a~~~~~~f~Y~dP~~n------fd-----rs~V~G~Va~Li~vkd~~~~tAle~~aGgrLynvVv~te~tgkqLLq~g- 566 (1174)
T KOG0933|consen 499 LARLANYEFTYQDPEPN------FD-----RSKVKGLVAKLIKVKDRSYATALETTAGGRLYNVVVDTEDTGKQLLQRG- 566 (1174)
T ss_pred HhhhcccccccCCCCcc------ch-----HHHHHHHHHHHheeCcchHHHHHHHHhcCcceeEEeechHHHHHHhhcc-
Confidence 44443333333221110 00 0126677777777677789999999999999999999999998776521
Q ss_pred hcCCCCcceecCCCccCCcchhhh-hcc--CCCCCcceeeeeeccCcchHHHHHHHHhCCeEecCChHHHHhhhcccCCC
Q psy16118 511 DHQLDPETFLPIDYLQTKPLKERL-RNI--RDPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQ 587 (1070)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 587 (1070)
.-..|+|++|++.|....+++.. +.. -.++++.+++++|.|+ +.+.+++.++||+++||++++.|+.+++.. .
T Consensus 567 -~l~rRvTiIPLnKI~s~~~s~~v~~~ak~v~~~~v~~al~Li~yd-~~l~~amefvFG~tlVc~~~d~AKkVaf~~--~ 642 (1174)
T KOG0933|consen 567 -NLRRRVTIIPLNKIQSFVLSPNVLQAAKNVGNDNVELALSLIGYD-DELKKAMEFVFGSTLVCDSLDVAKKVAFDP--K 642 (1174)
T ss_pred -cccceeEEEechhhhhccCCHhHHHHHHHhcCchHHHHHHHhcCC-HHHHHHHHHHhCceEEecCHHHHHHhhccc--c
Confidence 12257899999999876655443 221 2356788999999999 699999999999999999999999999966 5
Q ss_pred ccceEEeeCceeEecCcccccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhchhHHhHHHHHHHHHHHHHHHH
Q psy16118 588 HRYDAVALDGTFYQKSGIMSGGSLDLARKAKRWDDKEMGNLKAQKEKLSEELREAMKKSRKESELNTVQSTIKGLEIRLN 667 (1070)
Q Consensus 588 ~~~~~~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~l~ 667 (1070)
.+.+.||++|++++|.|.++||+.......-. .-+.+.....++...+.++..+..+ -..+.........+..++.
T Consensus 643 i~~rsVTl~GDV~dP~GtlTGGs~~~~a~~L~-~l~~l~~~~~~~~~~q~el~~le~e---L~~le~~~~kf~~l~~ql~ 718 (1174)
T KOG0933|consen 643 IRTRSVTLEGDVYDPSGTLTGGSRSKGADLLR-QLQKLKQAQKELRAIQKELEALERE---LKSLEAQSQKFRDLKQQLE 718 (1174)
T ss_pred cccceeeecCceeCCCCcccCCCCCCcccHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 66668999999999999999999654332100 0013333333333333333332211 0000111111111222222
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCCch
Q psy16118 668 YSRQDLQNTKSQI-----AKLEAEIDALNARADATEPKIKAIEASMTARGDTISRKKEEMNSVEDIVFRDFCKSIGVSTI 742 (1070)
Q Consensus 668 ~~~~~l~~~~~~l-----~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~ 742 (1070)
-....+.-+...+ ..+...+..+...+.....+|.+....+......+..++..+..+...-. ...
T Consensus 719 l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re---------~rl 789 (1174)
T KOG0933|consen 719 LKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRE---------RRL 789 (1174)
T ss_pred HHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhH---------hHH
Confidence 2111111111111 11111111222222222222222222222222222222222111111000 000
Q ss_pred HHHHHHHHHHHHHHHHHHhh-HHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 743 RQYEEAELRSQQERQKICQD-KDTKKNVARWERAVSDDEEELARAQGAEEKLAGEMRAEADKLENMRATRLTKKQAVDAM 821 (1070)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 821 (1070)
..+...+......+++.... ..-......+.-+...+..++...+..+.++...+..+...+..+...+.........+
T Consensus 790 kdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~ 869 (1174)
T KOG0933|consen 790 KDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKA 869 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Confidence 11111111111111111110 11122222333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH-------HHHHHHHhhccccCcccc-----
Q psy16118 822 DEEIGKARREVGSIAKDIQAAQKSCVNL--------------ESKLEMKK-------SERHDILMNCKMNDIVLP----- 875 (1070)
Q Consensus 822 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~--------------~~~l~~~~-------~~~~~~~~~~~~~~~~~~----- 875 (1070)
+..+......+.....++..+......+ ..++..+. ..++.+.... ..++
T Consensus 870 ~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~----~wi~~ek~~ 945 (1174)
T KOG0933|consen 870 QAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKH----EWIGDEKRL 945 (1174)
T ss_pred HHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhc----cchhHHHHh
Confidence 3333333333333333332222222211 11111111 1111111100 0111
Q ss_pred c-chhhhhH------HHHHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 876 M-LRVQKYD------RKLAKSIQEMTSRLQTIQ-APNLRAMEKLEHAKENLMKTNEEFENARKRAKKAKANFDRIKKERY 947 (1070)
Q Consensus 876 ~-~~~~~~~------~~l~~~l~~l~~~l~~l~-~~n~~a~~e~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~~~~~~~ 947 (1070)
+ ..+..|+ .....++..|+.....++ .+|+.+.+-++.++..+..+...+..+......|.+.|..++...+
T Consensus 946 fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~ 1025 (1174)
T KOG0933|consen 946 FGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKR 1025 (1174)
T ss_pred hcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 0 0011111 167889999998888887 4899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc-cccCCCceeeccCCCCCCc---c----c----h-----hhh---h-------hhhccccCC
Q psy16118 948 DKFTRCFEHVSNEIDGAG-SESVLPRPFLGPENPEEPL---T----Y----R-----VST---T-------IVSHRYHPA 1000 (1070)
Q Consensus 948 ~~f~~~~~~i~~~~~~~f-~~~~~~~~~l~~~~~~~~~---~----~----r-----LSG---t-------~al~~~~~~ 1000 (1070)
+.+..++..||..|..+| .+.||..+.|.|.+..+.. . | + ||| | ||+..++||
T Consensus 1026 ~~L~kaw~~VN~dFG~IFs~LLPga~AkL~Ppeg~~~~dGLEvkV~~G~iWKeSL~ELSGGQRSLVALsLIlamL~fkPA 1105 (1174)
T KOG0933|consen 1026 EELNKAWEKVNKDFGSIFSTLLPGAMAKLEPPEGKTVLDGLEVKVKFGGIWKESLSELSGGQRSLVALSLILAMLKFKPA 1105 (1174)
T ss_pred HHHHHHHHHHhhhHHHHHHHhCCCccccccCCCCCccccceEEEEEeCccHHHHHHHhcCchHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999 8899999999976543322 1 1 2 999 3 999999999
Q ss_pred CeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccceeee
Q psy16118 1001 PFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTISSIC 1064 (1070)
Q Consensus 1001 Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~v~ 1064 (1070)
|||||||||||||-.....++.||+..+ +++||||||++.+||..||+||.+.- .+|||.|.
T Consensus 1106 PlYILDEVDAALDLSHTQNIG~mIkthF-~~sQFIVVSLKeGMF~NANvLFrtrF-~DG~Stv~ 1167 (1174)
T KOG0933|consen 1106 PLYILDEVDAALDLSHTQNIGRMIKTHF-THSQFIVVSLKEGMFNNANVLFRTRF-VDGVSTVQ 1167 (1174)
T ss_pred ceeehhhhHHhhcchhhhhHHHHHHhhC-CCCeEEEEEchhhccccchhhheeee-ecCceeee
Confidence 9999999999999999999999999999 99999999999999999999998775 46888864
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=100.00 E-value=1.2e-54 Score=562.10 Aligned_cols=595 Identities=20% Similarity=0.326 Sum_probs=306.1
Q ss_pred cCCcceecccccccchhhHHHHHHHHhccCCCeEEeCCHHHHHHHHHHHhhcCCCCcceecCCCccCCcchhhhhc-cC-
Q psy16118 461 YSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTKPLKERLRN-IR- 538 (1070)
Q Consensus 461 ~~~~~g~~~~~~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 538 (1070)
++|++|.+.+++. +++.|..++...+|+.+..+||++...+..++.+++....|+++|+|++.+..+........ ++
T Consensus 518 ~~~~~g~~~~li~-~~~~~~~a~~~~~g~~~~~ivv~~~~~a~~~~~~l~~~~~g~~~~l~l~~i~~~~~~~~~~~~~~~ 596 (1179)
T TIGR02168 518 LSGILGVLSELIS-VDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKN 596 (1179)
T ss_pred cCCCccchhceee-eChhHHHHHHHHHHHHhcCeEECCHHHHHHHHHHhcccCCCcEEEeeccccccccccccchhhccc
Confidence 4678888888886 56799999999999988889999999999999999988899999999988765422211111 11
Q ss_pred CCCCcceeeeeeccCcchHHHHHHHHhCCeEecCChHHHHhhhcccCCCccceEEeeCceeEecCcccccCCcccccccc
Q psy16118 539 DPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALDGTFYQKSGIMSGGSLDLARKAK 618 (1070)
Q Consensus 539 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~~~~~~~~~~ 618 (1070)
..+++..+.+++.++ +.+.+++.+.+|.+.+|.+++.|..+.+.. .....+++++|.++..+|.++++.........
T Consensus 597 ~~~~~~~~~dl~~~~-~~~~~~~~~~~~~~~ivt~l~~a~~~~~~~--~~~g~~v~~~G~~~~~gg~~~~~~~~~~~~~~ 673 (1179)
T TIGR02168 597 IEGFLGVAKDLVKFD-PKLRKALSYLLGGVLVVDDLDNALELAKKL--RPGYRIVTLDGDLVRPGGVITGGSAKTNSSIL 673 (1179)
T ss_pred cCchhHHHHHHhccc-HhHHHHHHHHhCCceEeCCHHHHHHHHHHc--CCCceEEecCCEEEcCCceEecCccccccchh
Confidence 124455667777887 577777777788878889999998777643 22345888888877666665554321111111
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHh-chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy16118 619 RWDDKEMGNLKAQKEKLSEELREAMKK-SRKESELNTVQSTIKGLEIRLNYSRQDLQNTKSQIAKLEAEIDALNARADAT 697 (1070)
Q Consensus 619 ~~~~~~l~~l~~~~~~l~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l 697 (1070)
.+ ...+..+...+..+...+..+... ..+...+..+...+..+...+..+...+..+...+..+...+..+..++..+
T Consensus 674 ~l-~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~ 752 (1179)
T TIGR02168 674 ER-RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752 (1179)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 124444444444444444443322 2222333333333333333333333333333333333333333333332222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH------HHHHHHhC--CCchHHHHHHHHHHHHHHHHHHhh-HHhHHH
Q psy16118 698 EPKIKAIEASMTARGDTISRKKEEMNSVEDIVF------RDFCKSIG--VSTIRQYEEAELRSQQERQKICQD-KDTKKN 768 (1070)
Q Consensus 698 ~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 768 (1070)
...+..+...+..+..++..+...+..+...+. ........ .................+...... ..+...
T Consensus 753 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 832 (1179)
T TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222222222222222221110 00000000 000001111111111111111000 112222
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy16118 769 VARWERAVSDDEEELARAQGAEEKLA-------GEMRAEADKLENMRATRLTKKQAVDAMDEEIGKARREVGSIAKD--- 838 (1070)
Q Consensus 769 ~~~l~~~~~~l~~~~~~l~~~~~~~~-------~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~--- 838 (1070)
+..+...+..+..++..+...+..+. ..+..+...+..+...+..+...+..+...+..+...+..+...
T Consensus 833 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1179)
T TIGR02168 833 IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE 912 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222222222222222 22222222222222222222222223333322222222222222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhhhhHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHH
Q psy16118 839 ----IQAAQKSCVNLESKLEMKKSERHDILMNCKMNDIVLPMLRVQKYDRKLAKSIQEMTSRLQTIQAPNLRAMEKLEHA 914 (1070)
Q Consensus 839 ----~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~n~~a~~e~~~~ 914 (1070)
+..+...+..+...+..+...+......+.. ...++..........+...+..++..|..+|+ ++++|..+
T Consensus 913 l~~~l~~l~~~~~~~~~~~~~l~~~l~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lg~----aiee~~~~ 987 (1179)
T TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRIDNLQERLSE-EYSLTLEEAEALENKIEDDEEEARRRLKRLEN----KIKELGPV 987 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCHHHHHhhccccccCHHHHHHHHHHHHH----HHHHcCCC
Confidence 2222333333333333222222221111100 00000000000000023344555555555554 55555544
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhcc-----cccCCCceeeccCCCCC
Q psy16118 915 K----ENLMKTNEEFENARKRAKKAKANFDRIKKERYDKF---TRCFEHVSNEIDGAG-----SESVLPRPFLGPENPEE 982 (1070)
Q Consensus 915 ~----~~~~~l~~~~~~l~~~~~~l~~~i~~~~~~~~~~f---~~~~~~i~~~~~~~f-----~~~~~~~~~l~~~~~~~ 982 (1070)
. ++|.++..++.++......+...|..++......| ..+|..|+.+|..+| .+++||.++|.+.|+++
T Consensus 988 ~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~~~~~~~~~~~~~~~~~ 1067 (1179)
T TIGR02168 988 NLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKLFGGGEAELRLTDPED 1067 (1179)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4 55666666666666666666666666666666666 666666666555555 45679999998877666
Q ss_pred Cc--cc--------------h-hhh---h-------hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEE
Q psy16118 983 PL--TY--------------R-VST---T-------IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTI 1035 (1070)
Q Consensus 983 ~~--~~--------------r-LSG---t-------~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i 1035 (1070)
|+ ++ . ||| . ||+|.+.|+|||||||+|++||..|+..|+.+|..++ ...|||
T Consensus 1068 ~~~~~~~~~~~~~~~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~-~~~~~i 1146 (1179)
T TIGR02168 1068 LLEAGIEIFAQPPGKKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFS-KNTQFI 1146 (1179)
T ss_pred ccccCceEEEeCCCCccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhc-cCCEEE
Confidence 65 11 1 899 1 6677789999999999999999999999999999997 779999
Q ss_pred EEecCcchHhhcchheeeccCCccceeeecc
Q psy16118 1036 VISLKEEFFSHADSLVGICPGSVTISSICFG 1066 (1070)
Q Consensus 1036 ~iT~~~~~~~~ad~l~gVt~~~~gvs~v~~~ 1066 (1070)
||||++.++..||.+|||++.++|||+||+.
T Consensus 1147 ~~sh~~~~~~~~d~~~~~~~~~~~~~~~~~~ 1177 (1179)
T TIGR02168 1147 VITHNKGTMEVADQLYGVTMQEKGVSKIVSV 1177 (1179)
T ss_pred EEEcChhHHHHhhhHeeeeeccCCceeEeec
Confidence 9999999999999999999998899999863
No 8
>KOG0250|consensus
Probab=100.00 E-value=1.8e-43 Score=393.20 Aligned_cols=231 Identities=16% Similarity=0.282 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q psy16118 364 QVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEELGDAKTDKHE 443 (1070)
Q Consensus 364 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 443 (1070)
+.+.+.++..+..++..++..+..|..+.+.+...+.....+...++..+..+...+......+..+...-.+....+.
T Consensus 396 ~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG- 474 (1074)
T KOG0250|consen 396 LEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG- 474 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc-
Confidence 3333334444444444444444444444444444444444444444444444444444444444444333322222222
Q ss_pred HHHHHHHHHHHHHHHHhc----CCcceecccccccchhhHHHHHHHHhccCCCeEEeCCHHHHHHHHHHHhhcCCCC--c
Q psy16118 444 DTRRKKKQELVENFKKAY----SGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDP--E 517 (1070)
Q Consensus 444 ~~~~~~~~~~~~~l~~~~----~~~~g~~~~~~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~~~~~L~~~~~~~--~ 517 (1070)
..++.++.++.... ..|.|+++..++..+++|..+|+.++|+.|++|+|.+..++..+...++....+. +
T Consensus 475 ----~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh~D~~~Lr~i~~~~~~~~~~p 550 (1074)
T KOG0250|consen 475 ----PNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIERCLGNLLNAFIVTSHKDARILRAIMRRLKIPGNRP 550 (1074)
T ss_pred ----hhhHHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHHHHHHhhhhheeCCHhhHHHHHHHHHHcCCCCCCC
Confidence 23466777775432 2367777777776777999999999999999999999999999888888777653 3
Q ss_pred ceecCCCccCCcchhhhhccCC-CCC-cceeeeeeccCcchHHHHHHHHhC--CeEecCChHHHHhhhccc-CCCccceE
Q psy16118 518 TFLPIDYLQTKPLKERLRNIRD-PKN-VKLLYDVLKYQPEDIKRVVLFATN--NALVCETPEDAMKVAYDI-EPQHRYDA 592 (1070)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~-~~~~~~~~ 592 (1070)
+++..... +..++.+. |+. ++++++++.+++|.+.+.+-...| +++++++...|..++... +|.....+
T Consensus 551 tIvvs~~~------~~~y~~~~~p~~~~pTil~~le~ddp~V~N~LID~s~iE~~lLiEdk~Ea~~~m~s~~~p~n~~~a 624 (1074)
T KOG0250|consen 551 TIVVSSFT------PFDYSVGRNPGYEFPTILDALEFDDPEVLNVLIDKSGIEQVLLIEDKKEAREFMQSDKPPANVTKA 624 (1074)
T ss_pred cEEEecCC------ccccccccCCCCCCCceeeeeecCChHHHHHhhhhccceeEEEecchHHHHHHHhcCCCCccceee
Confidence 33311110 00111111 222 578999999999999888755543 577888877777666554 44566679
Q ss_pred EeeCceeEecCcc
Q psy16118 593 VALDGTFYQKSGI 605 (1070)
Q Consensus 593 ~tl~~~~~~~~~~ 605 (1070)
+|++|.....+|.
T Consensus 625 ytldg~~~~~~g~ 637 (1074)
T KOG0250|consen 625 YTLDGRQIFAGGP 637 (1074)
T ss_pred eccCccccccCCC
Confidence 9999988876665
No 9
>PRK02224 chromosome segregation protein; Provisional
Probab=100.00 E-value=4.3e-31 Score=325.18 Aligned_cols=67 Identities=25% Similarity=0.343 Sum_probs=56.9
Q ss_pred CCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchHhhcchheeeccCCc-cceeeec
Q psy16118 999 PAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFFSHADSLVGICPGSV-TISSICF 1065 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~~~ad~l~gVt~~~~-gvs~v~~ 1065 (1070)
|.||+||||++++||..++..++.+|..++.. .+|||||||++.++..||.+|+|++... -.|+|..
T Consensus 811 ~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ad~~~~~~~~~~~~~~~~~~ 879 (880)
T PRK02224 811 PLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGAADDLVRVEKDPTTNRSSVER 879 (880)
T ss_pred CCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHhcCeeEEeecCCCcCcccccC
Confidence 56889999999999999999999999998622 3699999999999999999999998532 3465543
No 10
>KOG0979|consensus
Probab=100.00 E-value=2.6e-30 Score=283.81 Aligned_cols=155 Identities=23% Similarity=0.303 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy16118 885 KLAKSIQEMTSRLQTIQAPNLRAMEKLEHAKENLMKTNEEFENARKRAKKAKANFDRIKKERYDKFTRCFEHVSNEIDGA 964 (1070)
Q Consensus 885 ~l~~~l~~l~~~l~~l~~~n~~a~~e~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~~i~~~~~~~ 964 (1070)
++...|..-..+...+-.+|..+..+|+..+.++..+...+......+..+.+.+..+...+...+.+....|+.+|...
T Consensus 839 eld~~I~~e~t~~~~~~n~ne~~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In~~Fs~~ 918 (1072)
T KOG0979|consen 839 ELDQAITDELTRALKFENVNEDAVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQINERFSQL 918 (1072)
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556655555445555689999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cccCCCceeeccCCCCCCc--------cch------------hhh------h----hhhccccCCCeEEeecccccCC
Q psy16118 965 G-SESVLPRPFLGPENPEEPL--------TYR------------VST------T----IVSHRYHPAPFFVLDEIDAALD 1013 (1070)
Q Consensus 965 f-~~~~~~~~~l~~~~~~~~~--------~~r------------LSG------t----~al~~~~~~Pf~ilDEvda~lD 1013 (1070)
| .+++.|.+.|.. +|.|.. .|| -|| | +||+.+.||||.|.|||.-|||
T Consensus 919 F~~mg~aGeV~L~~-~~~DydkwgI~ImVkFR~s~~L~~L~sh~QSGGERSVSTiLYLlALQ~l~~~PFRvVDEINQGMD 997 (1072)
T KOG0979|consen 919 FSSMGCAGEVSLEV-NPLDYDKWGIMIMVKFRDSEGLKVLDSHRQSGGERSVSTILYLLALQELTPAPFRVVDEINQGMD 997 (1072)
T ss_pred HhhcccCceEEecc-CcccHhHhceEEEEEEccCcccccccccccCCcchHHHHHHHHHHHhhccCCCeeehhhhhcCCC
Confidence 9 778888888875 444432 233 677 3 9999999999999999999999
Q ss_pred hhhHHHHHHHHHHhcC--CCceEEEEecC
Q psy16118 1014 NTNIGKVASYIVTKTQ--DSLQTIVISLK 1040 (1070)
Q Consensus 1014 ~~n~~~~~~~l~~~~~--~~~Q~i~iT~~ 1040 (1070)
+.|-++|.++|..++| ..+||++|||+
T Consensus 998 p~NER~Vh~~mV~~ac~entsQyFliTPK 1026 (1072)
T KOG0979|consen 998 PRNERKVHDIMVNMACKENTSQYFLITPK 1026 (1072)
T ss_pred chhHHHHHHHHHHHhhcCCCcceEEecch
Confidence 9999999999999987 67899999997
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=100.00 E-value=1.6e-27 Score=294.78 Aligned_cols=70 Identities=21% Similarity=0.233 Sum_probs=62.5
Q ss_pred ccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccceeeec
Q psy16118 995 HRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTISSICF 1065 (1070)
Q Consensus 995 ~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~v~~ 1065 (1070)
+.+.|+||+||||++++||..++..++.+|..+.....|||||||++.++..||.+|.|.+. +|+|+|.+
T Consensus 808 ~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l~~~-~~~s~~~~ 877 (880)
T PRK03918 808 YLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRVSLE-GGVSKVEV 877 (880)
T ss_pred HhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEEEec-CCeeEEEe
Confidence 34578899999999999999999999999998763457999999999999999999999986 69999875
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=8.2e-25 Score=275.42 Aligned_cols=74 Identities=22% Similarity=0.261 Sum_probs=61.2
Q ss_pred hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-----CCceEEEEecCcchHh------hcchheeeccCCccc
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-----DSLQTIVISLKEEFFS------HADSLVGICPGSVTI 1060 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-----~~~Q~i~iT~~~~~~~------~ad~l~gVt~~~~gv 1060 (1070)
||-..+.++||++|||++++||..++..+...|..+.. .+.++|||||...++. .++.+|.|++.+.|.
T Consensus 1216 la~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 (1311)
T TIGR00606 1216 LAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLKKNEDQC 1295 (1311)
T ss_pred HHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeeeeccccC
Confidence 44445678899999999999999999999988887621 3579999999988765 568899999998999
Q ss_pred eeeec
Q psy16118 1061 SSICF 1065 (1070)
Q Consensus 1061 s~v~~ 1065 (1070)
|.|.-
T Consensus 1296 ~~~~~ 1300 (1311)
T TIGR00606 1296 SEIVK 1300 (1311)
T ss_pred ceeEe
Confidence 88764
No 13
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.98 E-value=3.9e-24 Score=260.16 Aligned_cols=155 Identities=20% Similarity=0.187 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccC-------------CC
Q psy16118 908 MEKLEHAKENLMKTNEEFENARKRAKK---AKANFDRIKKERYDKFTRCFEHVSNEIDGAGSESV-------------LP 971 (1070)
Q Consensus 908 ~~e~~~~~~~~~~l~~~~~~l~~~~~~---l~~~i~~~~~~~~~~f~~~~~~i~~~~~~~f~~~~-------------~~ 971 (1070)
+..+......+..+..+++.+...... +...+.... .+...+..+...|...+..+|..+. ++
T Consensus 718 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~ 796 (908)
T COG0419 718 IEELESRKAELEELKKELEKLEKALELLEELREKLGKAG-LRADILRNLLAQIEAEANEILSKLSLNRYDLRRLTIRKDG 796 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcc
Confidence 334555555555566665655543333 333333331 1344455555555555555551110 11
Q ss_pred c--eeeccCCCCCCccch-hhh--h--------hhhccc----cCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceE
Q psy16118 972 R--PFLGPENPEEPLTYR-VST--T--------IVSHRY----HPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQT 1034 (1070)
Q Consensus 972 ~--~~l~~~~~~~~~~~r-LSG--t--------~al~~~----~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~ 1034 (1070)
. ..+...++....++. ||| + +||..+ .|.||+||||++++||+.++..++..|..+.....|+
T Consensus 797 ~~~~~~~~~~~~~~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qi 876 (908)
T COG0419 797 NGGLVVVVYDGGEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQI 876 (908)
T ss_pred ccceEEEEecCCCccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeE
Confidence 1 122222221111233 999 2 443322 3689999999999999999999999999997456899
Q ss_pred EEEecCcchHhhcchheeeccCCccceeee
Q psy16118 1035 IVISLKEEFFSHADSLVGICPGSVTISSIC 1064 (1070)
Q Consensus 1035 i~iT~~~~~~~~ad~l~gVt~~~~gvs~v~ 1064 (1070)
|||||.+.+-+.||+.+-|.+.+ |.|+|-
T Consensus 877 iIISH~eel~e~~~~~i~V~k~~-g~S~v~ 905 (908)
T COG0419 877 IIISHVEELKERADVRIRVKKDG-GRSRVE 905 (908)
T ss_pred EEEeChHHHHHhCCeEEEEEecC-Ccceee
Confidence 99999999999999999999976 988874
No 14
>PRK01156 chromosome segregation protein; Provisional
Probab=99.97 E-value=1e-23 Score=259.24 Aligned_cols=70 Identities=23% Similarity=0.207 Sum_probs=60.2
Q ss_pred ccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC---CceEEEEecCcchHhhcchheeeccCCccceeeec
Q psy16118 995 HRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD---SLQTIVISLKEEFFSHADSLVGICPGSVTISSICF 1065 (1070)
Q Consensus 995 ~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~---~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~v~~ 1065 (1070)
+.+.|+||++|||++++||+.++..++.+|...... .+|+|||||.+.++..||.+|.|++. +|+|+|..
T Consensus 821 ~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d~ii~~~~~-~~~s~v~~ 893 (895)
T PRK01156 821 FLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVADVAYEVKKS-SGSSKVIP 893 (895)
T ss_pred HhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcCeEEEEEec-CCeeEEee
Confidence 445788999999999999999999999998753212 25999999999999999999999985 79999864
No 15
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.96 E-value=1e-21 Score=254.96 Aligned_cols=116 Identities=19% Similarity=0.235 Sum_probs=67.6
Q ss_pred HHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHH
Q psy16118 56 EETNMSYLKKKGVVAER----KEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDIKELEDELDKKKGEVEKIERR 131 (1070)
Q Consensus 56 ~~~~~~~~~i~~l~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (1070)
..+..++.++.++..++ ..+..++..+.+|..+..++..+...+....+..+...+..+...+..+...+..+...
T Consensus 175 ~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 254 (1179)
T TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEE 254 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455554443333 34677778888888888877777776666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16118 132 KEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKR 171 (1070)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (1070)
+..+...+..+...+..+...+..+...+..+...+..+.
T Consensus 255 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~ 294 (1179)
T TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA 294 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555555555444444444444444444444333333
No 16
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.96 E-value=8.7e-21 Score=232.26 Aligned_cols=69 Identities=14% Similarity=0.007 Sum_probs=60.7
Q ss_pred CCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCc-cceeeeccc
Q psy16118 999 PAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSV-TISSICFGH 1067 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~-gvs~v~~~~ 1067 (1070)
|.+++||||++++||......|+.+|..+...+.-||||||...+....++.+-|++..+ |.|+|....
T Consensus 975 ~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~qi~V~k~~g~g~S~v~~~~ 1044 (1047)
T PRK10246 975 RIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKINGLGYSKLDSAF 1044 (1047)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccceEEEEECCCCCcceeehhh
Confidence 667999999999999999999999999985467899999999999999999999999544 689887543
No 17
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.96 E-value=3.9e-19 Score=217.83 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=45.5
Q ss_pred HHHHHHhcCCcceecccccccchhhHHHHHHHHhccCCCeEEeCCHHHHHHHHHHHhh
Q psy16118 454 VENFKKAYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKD 511 (1070)
Q Consensus 454 ~~~l~~~~~~~~g~~~~~~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~~~~~L~~ 511 (1070)
+..+...++|++ +.++++.+++.|.+++.+++|+..+++||++...+..+|.+|..
T Consensus 675 l~~~~~~~~Gvl--vsel~~~v~~~~~~~~~A~lg~~~~~iVv~d~~~A~~ai~~L~~ 730 (1486)
T PRK04863 675 LNALAERFGGVL--LSEIYDDVSLEDAPYFSALYGPARHAIVVPDLSDAAEQLAGLED 730 (1486)
T ss_pred HHHHHHhcCCee--hhHhhhccCcchHHHHHHHHHhhhCeEEeCCHHHHHHHHHhccC
Confidence 344445677877 66766546778999999999999999999999999999998864
No 18
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=5.6e-18 Score=210.03 Aligned_cols=64 Identities=16% Similarity=0.092 Sum_probs=54.1
Q ss_pred CCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccceee
Q psy16118 999 PAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTISSI 1063 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~v 1063 (1070)
+.||+||||++++||+..+..++++|..+...+.-||||||.+.+....+..+.|.+.. |.|+|
T Consensus 978 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~~~i~v~~~~-~gS~i 1041 (1042)
T TIGR00618 978 VLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIPHRILVKKTN-AGSHV 1041 (1042)
T ss_pred CCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhCCEEEEEECC-CCccc
Confidence 56899999999999999999999999998634456889999999999888888888864 44544
No 19
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.94 E-value=1.3e-17 Score=215.78 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q psy16118 43 DYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDIKELEDELDKKK 122 (1070)
Q Consensus 43 ~y~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1070)
.|......+...+..+.+.+.++ ...+..+..+...+.+|.....++..+...+....+..+...+..+..++..+.
T Consensus 167 ~~~~~~~~~~~~l~~~~~~l~el---~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1164)
T TIGR02169 167 EFDRKKEKALEELEEVEENIERL---DLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIE 243 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444333 333344555556666666666656655555544444444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 123 GEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIR 161 (1070)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (1070)
.++..+...+..+...+..+...+..+...+..+...+.
T Consensus 244 ~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 282 (1164)
T TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK 282 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555544444444444444433333
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.92 E-value=2.8e-16 Score=196.03 Aligned_cols=192 Identities=20% Similarity=0.265 Sum_probs=132.7
Q ss_pred CCCccchHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhh
Q psy16118 35 NGSGALKDDYER---LKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKL----YHN 107 (1070)
Q Consensus 35 nGaG~~~~~y~~---~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 107 (1070)
-|...|...+.. ....+...+..+...+..+..-.+.++.....+.+|..+..-...+......+.|.++ ..+
T Consensus 165 aGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~ 244 (1163)
T COG1196 165 AGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEEL 244 (1163)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478866665554 4455667777888888888888888888878788887777777777777666666544 566
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH
Q psy16118 108 ETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKK 187 (1070)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (1070)
...+..+...+..+...+......+..+...+..+...+..+...+..+...+..+...+..+...+..+..........
T Consensus 245 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~ 324 (1163)
T COG1196 245 EEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEER 324 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777778888888888888888888888877777777766666666677777777777777777777776666666
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy16118 188 LASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEY 226 (1070)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 226 (1070)
+..+...+......+.........+......+.......
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~ 363 (1163)
T COG1196 325 LEELKEKIEALKEELEERETLLEELEQLLAELEEAKEEL 363 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666655444444444444444443333
No 21
>KOG0962|consensus
Probab=99.90 E-value=1.8e-14 Score=167.22 Aligned_cols=76 Identities=22% Similarity=0.256 Sum_probs=61.1
Q ss_pred hhhccc--cCCCeEEeecccccCChhhHHHHHHHHHHhcC-----CCceEEEEecCcchHh------hcchheeeccCCc
Q psy16118 992 IVSHRY--HPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-----DSLQTIVISLKEEFFS------HADSLVGICPGSV 1058 (1070)
Q Consensus 992 ~al~~~--~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-----~~~Q~i~iT~~~~~~~------~ad~l~gVt~~~~ 1058 (1070)
+|+..+ ..|..+.|||++.+||..|+..++.-|..+-. .+.|.|||||...+.. +++++|.|.+.+.
T Consensus 1198 LALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~i~~~~~~e~~yr~~kd~~ 1277 (1294)
T KOG0962|consen 1198 LALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQLLGRSAYPEYFYRVKKDES 1277 (1294)
T ss_pred HHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHHhhhcccchheeeecccch
Confidence 555543 46778999999999999999988877655432 6789999999876554 5678999999999
Q ss_pred cceeeeccc
Q psy16118 1059 TISSICFGH 1067 (1070)
Q Consensus 1059 gvs~v~~~~ 1067 (1070)
|.|.||-+.
T Consensus 1278 ~~s~i~~~~ 1286 (1294)
T KOG0962|consen 1278 QISMIVKHS 1286 (1294)
T ss_pred hcceeeeec
Confidence 999998764
No 22
>KOG0996|consensus
Probab=99.87 E-value=1.9e-13 Score=154.24 Aligned_cols=188 Identities=18% Similarity=0.275 Sum_probs=112.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q psy16118 39 ALKDDYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDIKELEDEL 118 (1070)
Q Consensus 39 ~~~~~y~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (1070)
.|....+.+-..+..+.........+++-...++..+..+...+..|.....++-........+.+.....++.....++
T Consensus 264 ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~ 343 (1293)
T KOG0996|consen 264 RYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEEL 343 (1293)
T ss_pred ccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777788888888888899999999999999999888887776665555555555556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHH
Q psy16118 119 DKKKGEVEKIERRKEKAENILR--------EKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKLAS 190 (1070)
Q Consensus 119 ~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 190 (1070)
..+...+............... .++.....+......+...+.++...-...+..+..+...++.+.++++.
T Consensus 344 ~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek 423 (1293)
T KOG0996|consen 344 EKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEK 423 (1293)
T ss_pred HHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555555555444442222221 12222222222334444444555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy16118 191 AKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEY 226 (1070)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 226 (1070)
......++..........+.++..++..|.......
T Consensus 424 ~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~ 459 (1293)
T KOG0996|consen 424 ARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKE 459 (1293)
T ss_pred HHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555444333
No 23
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=99.85 E-value=4.2e-12 Score=159.39 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=35.0
Q ss_pred CCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecC
Q psy16118 999 PAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLK 1040 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~ 1040 (1070)
+.++++|||+++++|+.++..++.+|..+ +.||||+||.
T Consensus 1277 ~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1277 APRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 44589999999999999999999999988 4899999975
No 24
>KOG0161|consensus
Probab=99.85 E-value=5.6e-12 Score=155.23 Aligned_cols=318 Identities=17% Similarity=0.297 Sum_probs=162.1
Q ss_pred HHHHHHHHhhH----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 98 EHQLFKLYHNE----------TDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEI 167 (1070)
Q Consensus 98 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1070)
.|.||.++..- ..+.....++..+..++...+....+++.....+..+...+..++..-...........
T Consensus 817 ~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~ 896 (1930)
T KOG0161|consen 817 TWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELL 896 (1930)
T ss_pred cCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888775432 34444444444455554444444444444444444333333333333333333333344
Q ss_pred HhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhhhHHhh
Q psy16118 168 NKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVEIN 247 (1070)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1070)
..+......+...+..+..++...+.....++........++..+...+.+++..+..+..+ ..
T Consensus 897 ~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~E----------------k~ 960 (1930)
T KOG0161|consen 897 ERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELE----------------KN 960 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HH
Confidence 44444444445555555555555555555555444444555555555555555444444432 22
Q ss_pred hccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcccChHhHHHHHH
Q psy16118 248 KKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTN 327 (1070)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (1070)
.....+..+...+..+...+..+......++..+..+...+...+.+...+......++.. +......+..-..
T Consensus 961 ~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~------l~~le~~le~e~~ 1034 (1930)
T KOG0161|consen 961 AAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQ------LDDLEVTLEREKR 1034 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 2222222333333333333333333333333333333333333333333333333333322 2222233444444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 328 LKAEATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKE 407 (1070)
Q Consensus 328 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 407 (1070)
....+++....+..++..++..+..+......+...+.....++..+..+++.....+..+...+.++..++.++...++
T Consensus 1035 ~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le 1114 (1930)
T KOG0161|consen 1035 IRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELE 1114 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666666666666666667777777777777777777777777777777777777777777777776
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q psy16118 408 ELNSDVGSSKNRVQELQKELEQVIEELGDA 437 (1070)
Q Consensus 408 ~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 437 (1070)
........++....++..++..+..++.+.
T Consensus 1115 ~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1115 AERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666667777777777777776666554
No 25
>PF13514 AAA_27: AAA domain
Probab=99.84 E-value=2.1e-12 Score=161.57 Aligned_cols=53 Identities=23% Similarity=0.398 Sum_probs=47.1
Q ss_pred cCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchhee
Q psy16118 998 HPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVG 1052 (1070)
Q Consensus 998 ~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~g 1052 (1070)
.|.|| |||++++++|+.....++++|.+++ ..+|||++||+++++..|...+|
T Consensus 1051 ~~lP~-IlDD~fvnfDd~R~~~~l~~L~~ls-~~~QVI~FTch~~l~~~a~~~~~ 1103 (1111)
T PF13514_consen 1051 EPLPF-ILDDIFVNFDDERARAALELLAELS-RRRQVIYFTCHEHLVELAREVFG 1103 (1111)
T ss_pred CCCcE-EeeCCccccCHHHHHHHHHHHHHhc-cCCeEEEEeccHHHHHHHHHhcC
Confidence 45554 5599999999999999999999998 89999999999999999887643
No 26
>KOG0161|consensus
Probab=99.80 E-value=6e-10 Score=137.79 Aligned_cols=48 Identities=15% Similarity=0.256 Sum_probs=22.6
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 763 KDTKKNVARWERAVSDDEEELARAQGAEEKLAGEMRAEADKLENMRAT 810 (1070)
Q Consensus 763 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 810 (1070)
..+...+.++...+.+....+.+++.....+..++.+++..+.++...
T Consensus 1494 k~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~ 1541 (1930)
T KOG0161|consen 1494 KNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAA 1541 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555444444444444444444444444444443
No 27
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=8.8e-11 Score=129.18 Aligned_cols=152 Identities=14% Similarity=0.183 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHhhccCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16118 885 KLAKSIQEMTSRLQTIQAPNLR--AMEKLEHAKENLMKTNEEFENARKRAKKAKANFDRIKKERYDKFTRCFEHVSNEID 962 (1070)
Q Consensus 885 ~l~~~l~~l~~~l~~l~~~n~~--a~~e~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~~i~~~~~ 962 (1070)
++..++..+..+|..+...... +..++..+..++.+....+..+.-....+.+.|..+...+.+...... .
T Consensus 792 el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~rlP~vi~~A-------~ 864 (984)
T COG4717 792 ELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKERRLPAVIQEA-------S 864 (984)
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH-------H
Confidence 5677777788888777543332 344577788888888888888888888888888888877766554433 3
Q ss_pred hcccccCCCc-eeecc-CCCCCCc-------cc--h-hhh-h---------hhhccc----cCCCeEEeecccccCChhh
Q psy16118 963 GAGSESVLPR-PFLGP-ENPEEPL-------TY--R-VST-T---------IVSHRY----HPAPFFVLDEIDAALDNTN 1016 (1070)
Q Consensus 963 ~~f~~~~~~~-~~l~~-~~~~~~~-------~~--r-LSG-t---------~al~~~----~~~Pf~ilDEvda~lD~~n 1016 (1070)
.+|....+|. -.+.. .|.+... .+ . ||- | ||+.+. -|-| +|+|.+++++|+..
T Consensus 865 ~~F~hlT~G~Yt~Iy~~e~~d~I~V~~~~G~~~~~~ELSqgT~EQLYlAlRfali~~~~~~~~LP-~i~DD~fVhFD~~R 943 (984)
T COG4717 865 EFFMHLTDGRYTGIYTQEDKDSIIVEHRAGGSKLAEELSQGTKEQLYLALRFALIHEVRTREPLP-FIADDIFVHFDDER 943 (984)
T ss_pred HHHhhccCCceeeeecccCCceeEEEecccccccHHHHhhhHHHHHHHHHHHHHHhhhccCCCCC-eeeccchhccCHHH
Confidence 3553333332 22221 1111111 11 2 888 5 777654 3444 45699999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEecCcchHh
Q psy16118 1017 IGKVASYIVTKTQDSLQTIVISLKEEFFS 1045 (1070)
Q Consensus 1017 ~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~ 1045 (1070)
..+++.+|.+++ ++.|+|..||.+.|-.
T Consensus 944 ~~r~~e~l~dls-~~~QviYFTCHe~~~d 971 (984)
T COG4717 944 AKRMLELLADLS-EGNQVIYFTCHEHTCD 971 (984)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEechhhhc
Confidence 999999999999 9999999999999864
No 28
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.74 E-value=2.8e-10 Score=144.71 Aligned_cols=105 Identities=10% Similarity=0.166 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q psy16118 624 EMGNLKAQKEKLSEELREAMKKSRKESELNTVQ-STIKGLEIRLNYSRQDLQNTKSQIAKLEAEIDALNARADATEPKIK 702 (1070)
Q Consensus 624 ~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~l~-~~~~~~~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~~~ 702 (1070)
....+...+......+..+....+....+..+. ..++.++..+..+...+..+...+..+...+..+...+..+..-..
T Consensus 710 ~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~ 789 (1311)
T TIGR00606 710 KLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLT 789 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344555555555555555544433334444443 4566666666666666666666666666666655555554443222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy16118 703 AIEASMTARGDTISRKKEEMNSVEDIV 729 (1070)
Q Consensus 703 ~l~~~~~~l~~~l~~l~~~~~~l~~~~ 729 (1070)
.+ ..+..+..++..+...+..+..++
T Consensus 790 ~v-~~i~r~~~ei~~l~~qie~l~~~l 815 (1311)
T TIGR00606 790 DV-TIMERFQMELKDVERKIAQQAAKL 815 (1311)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 224445566666666666555443
No 29
>KOG0964|consensus
Probab=99.72 E-value=2.9e-09 Score=118.46 Aligned_cols=36 Identities=25% Similarity=0.633 Sum_probs=34.5
Q ss_pred CccccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
|.|..+.|.||+||++.++|+||+| -|+|.|.||||
T Consensus 1 MyIk~ViI~GFrSYrd~tvv~~fSph~NvIVGrNGSG 37 (1200)
T KOG0964|consen 1 MYIKQVIIKGFRSYRDETVVDPFSPHHNVIVGRNGSG 37 (1200)
T ss_pred CceEEeeeccchhhccccccCCCCCCcceEecCCCCC
Confidence 8899999999999999999978998 99999999999
No 30
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.70 E-value=4.5e-14 Score=152.35 Aligned_cols=208 Identities=17% Similarity=0.195 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhhhhHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Q psy16118 836 AKDIQAAQKSCVNLESKLEMKKSERHDILMNCKMNDIVLPMLRVQKYDRKLAKSIQEMTSRLQTIQAPNLRAMEKLEHAK 915 (1070)
Q Consensus 836 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~n~~a~~e~~~~~ 915 (1070)
...+..+...+...-..+.+...++......+...+..+. .+..++..|..-.++|++.-.+++.-+..+.
T Consensus 261 d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~---------~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~ 331 (557)
T COG0497 261 DGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLE---------EVEERLFALKSLARKYGVTIEDLLEYLDKIK 331 (557)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH---------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3344455555555555555555555555555554444444 7889999999999999864445566667777
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhcccccCCCceee-------------
Q psy16118 916 ENLMKTNEEFE---NARKRAKKAKANF----DRIKKERYDKFTRCFEHVSNEIDGAGSESVLPRPFL------------- 975 (1070)
Q Consensus 916 ~~~~~l~~~~~---~l~~~~~~l~~~i----~~~~~~~~~~f~~~~~~i~~~~~~~f~~~~~~~~~l------------- 975 (1070)
.++..+...-. .+......+...+ ..+...|+..-...-..|...++.++. .++++.+
T Consensus 332 ~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~~eL~~L~M--e~a~F~ve~~~~~~~~t~~G 409 (557)
T COG0497 332 EELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVTAELKALAM--EKARFTVELKPLEESPTADG 409 (557)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCceEEEEeccCCCCCCcCC
Confidence 77776664433 3444444433333 445556666666666777777766641 2222222
Q ss_pred -------ccCCCCCCc-cc-h-hhh---h-------hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEE
Q psy16118 976 -------GPENPEEPL-TY-R-VST---T-------IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTI 1035 (1070)
Q Consensus 976 -------~~~~~~~~~-~~-r-LSG---t-------~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i 1035 (1070)
..+||+.|+ +. + .|| | .++....+.|.+||||||+|+.+.....+++.|+.+| .++|+|
T Consensus 410 ~d~VeF~istNpG~~~~PL~KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls-~~~QVl 488 (557)
T COG0497 410 ADKVEFLISTNPGEPLKPLAKVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLS-EHHQVL 488 (557)
T ss_pred cceEEEEEeCCCCCCCccHHhhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHh-cCceEE
Confidence 223333333 22 3 888 4 3333456789999999999999999999999999998 999999
Q ss_pred EEecCcchHhhcchheeecc
Q psy16118 1036 VISLKEEFFSHADSLVGICP 1055 (1070)
Q Consensus 1036 ~iT~~~~~~~~ad~l~gVt~ 1055 (1070)
||||.|++..+||.+|-|.+
T Consensus 489 ~VTHlPQVAa~ad~H~~V~K 508 (557)
T COG0497 489 CVTHLPQVAAMADTHFLVEK 508 (557)
T ss_pred EEecHHHHHhhhcceEEEEE
Confidence 99999999999999999999
No 31
>PRK10869 recombination and repair protein; Provisional
Probab=99.70 E-value=6.2e-14 Score=158.91 Aligned_cols=170 Identities=11% Similarity=0.173 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q psy16118 885 KLAKSIQEMTSRLQTIQAPNLRAMEKLEHAKENLMKTN---EEFENARKRAKKAKANF----DRIKKERYDKFTRCFEHV 957 (1070)
Q Consensus 885 ~l~~~l~~l~~~l~~l~~~n~~a~~e~~~~~~~~~~l~---~~~~~l~~~~~~l~~~i----~~~~~~~~~~f~~~~~~i 957 (1070)
.++.++..+..-.++||+.-...+.-++++..++..+. ..+..+......+...+ ..+...|.......-..|
T Consensus 300 ~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v 379 (553)
T PRK10869 300 ELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLI 379 (553)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777422223334444555544333 23444444443333333 455566777777777778
Q ss_pred HHHhhhcccccCCCceeeccC--------------------CCCCCc-cc-h-hhh---h---hhh----ccccCCCeEE
Q psy16118 958 SNEIDGAGSESVLPRPFLGPE--------------------NPEEPL-TY-R-VST---T---IVS----HRYHPAPFFV 1004 (1070)
Q Consensus 958 ~~~~~~~f~~~~~~~~~l~~~--------------------~~~~~~-~~-r-LSG---t---~al----~~~~~~Pf~i 1004 (1070)
...+..+- ++++.+.+.+. +++.|. +. + ||| + +|+ ....++|++|
T Consensus 380 ~~~L~~L~--m~~a~f~v~~~~~~~~~~~~G~d~veF~~~~n~g~~~~pL~k~lSgGe~~Ri~LA~~~~~~~~~~~~~li 457 (553)
T PRK10869 380 TESMHELS--MPHGKFTIDVKFDPEHLSADGADRIEFRVTTNPGQPLQPIAKVASGGELSRIALAIQVITARKMETPALI 457 (553)
T ss_pred HHHHHHcC--CCCcEEEEEEecCCCCCCCCCceEEEEEEecCCCCCcchhhhhCCHHHHHHHHHHHHHHhccCCCCCEEE
Confidence 77776653 33444333321 111111 11 2 899 2 333 3334789999
Q ss_pred eecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCC
Q psy16118 1005 LDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGS 1057 (1070)
Q Consensus 1005 lDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~ 1057 (1070)
|||||++||+.....|+++|..++ .++|||||||.+.+...||.+|.|.+..
T Consensus 458 ~DEpd~gld~~~~~~v~~~l~~l~-~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 458 FDEVDVGISGPTAAVVGKLLRQLG-ESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 999999999999999999999998 7899999999999999999999999843
No 32
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.68 E-value=3.7e-17 Score=165.86 Aligned_cols=70 Identities=34% Similarity=0.598 Sum_probs=61.9
Q ss_pred hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCcccee
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTISS 1062 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~ 1062 (1070)
||++.+.|+|||||||||++||+.|+.+++.+|.+++ +.+|||||||++.++..||.+|||+|.++|||.
T Consensus 151 lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~-~~~Q~ii~Th~~~~~~~a~~~~~v~~~~~g~~~ 220 (220)
T PF02463_consen 151 LALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELS-KQSQFIITTHNPEMFEDADKLIGVTMVENGVSA 220 (220)
T ss_dssp HHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHT-TTSEEEEE-S-HHHHTT-SEEEEEEECCTTCE-
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccCC
Confidence 9999999999999999999999999999999999998 899999999999999999999999999999983
No 33
>KOG0250|consensus
Probab=99.65 E-value=2.6e-08 Score=114.11 Aligned_cols=162 Identities=16% Similarity=0.144 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy16118 885 KLAKSIQEMTSRLQTIQAPNLRAMEKLEHAKENLMKTNEEFENARKRAKKAKANFDRIKKERYDKFTRCFEHVSNEIDGA 964 (1070)
Q Consensus 885 ~l~~~l~~l~~~l~~l~~~n~~a~~e~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~~i~~~~~~~ 964 (1070)
++...+..|...++....+.-.....+......+..+..+-.- ..-.+.+...+...-..|...|......++.+....
T Consensus 868 eik~ei~rlk~~i~~~ee~~~~~~e~~~~~~~~~~~~~k~~~~-k~~~~e~L~~l~~~l~~R~~~~qk~r~~~~~~~~~~ 946 (1074)
T KOG0250|consen 868 EIKREIKRLKRQIQMCEESLGELEELHRGLHEARKELKKEDEL-KVTLDELLKALGEALESREQKYQKFRKLLTRRATEE 946 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888876542221111122211122222111111 111233444444444566667777777787777777
Q ss_pred c-----cccCCCceeeccCCCCCCc----------------cch-hhh------h----hhhccccCCCeEEeecccccC
Q psy16118 965 G-----SESVLPRPFLGPENPEEPL----------------TYR-VST------T----IVSHRYHPAPFFVLDEIDAAL 1012 (1070)
Q Consensus 965 f-----~~~~~~~~~l~~~~~~~~~----------------~~r-LSG------t----~al~~~~~~Pf~ilDEvda~l 1012 (1070)
| ..+..|.+... +....+ +.+ ||| | +|||..+.+||++||||||||
T Consensus 947 F~~~l~~R~~sg~l~~~--~e~ktl~i~v~~~~~~~~~~v~d~~gLSGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFM 1024 (1074)
T KOG0250|consen 947 FDALLGKRGFSGKLEFD--HEEKTLSISVKLPTSGNEKAVRDTRGLSGGERSFSTVCLLLSLWEVMECPFRALDEFDVFM 1024 (1074)
T ss_pred HHHHhhccccCcceeec--ccccccchhhccCCCCcccccccccccCcccchHHHHHHHHHHhHhhcCchhhhhHHHHHH
Confidence 7 22223433222 211111 123 999 3 999999999999999999999
Q ss_pred ChhhHHHHHHHHHHhcC-CCceEEEEecCcchHhhcch
Q psy16118 1013 DNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFSHADS 1049 (1070)
Q Consensus 1013 D~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~ 1049 (1070)
|.+|+...+++|.+++- ..+|||+|||+.--+-..+-
T Consensus 1025 D~vNRKi~~dlLv~~a~~~~~Q~IfiTPqdi~~l~~~~ 1062 (1074)
T KOG0250|consen 1025 DMVNRKISMDLLVDFAKKKGRQFIFITPQDISKLNSDD 1062 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhhcceEEEEccccHhhhcccc
Confidence 99999999999999975 44899999998653333333
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=99.63 E-value=5.3e-08 Score=121.03 Aligned_cols=34 Identities=32% Similarity=0.600 Sum_probs=31.2
Q ss_pred CccccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
|+|.+|+|.|||||.+. +| +|++ +|+|+||||||
T Consensus 1 M~i~~l~l~nf~~~~~~-~~-~f~~g~~~i~G~Ng~G 35 (880)
T PRK02224 1 MRFDRVRLENFKCYADA-DL-RLEDGVTVIHGVNGSG 35 (880)
T ss_pred CeEEEEEEECcccccce-EE-ecCCCeEEEECCCCCC
Confidence 99999999999999864 66 8986 99999999999
No 35
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.62 E-value=4.1e-13 Score=154.57 Aligned_cols=65 Identities=14% Similarity=0.267 Sum_probs=58.2
Q ss_pred CCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCc---cceeee
Q psy16118 999 PAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSV---TISSIC 1064 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~---gvs~v~ 1064 (1070)
|+|++||||||++||+.++..|+++|..++ .+.|||||||.+.++..||.+|.|.++.. ++|+|.
T Consensus 462 ~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~~~~vi~iTH~~~~~~~ad~~~~l~k~~~~~~t~s~i~ 529 (563)
T TIGR00634 462 AVTTLIFDEVDVGVSGETAQAIAKKLAQLS-ERHQVLCVTHLPQVAAHADAHFKVEKEGLDGRTATRVR 529 (563)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEEChHHHHHhcCeEEEEEEccCCCcEEEEEE
Confidence 469999999999999999999999999998 78999999999999999999999998433 356654
No 36
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.60 E-value=7.3e-12 Score=147.27 Aligned_cols=66 Identities=20% Similarity=0.144 Sum_probs=58.5
Q ss_pred cCCCeEEeeccc-ccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccceeeecc
Q psy16118 998 HPAPFFVLDEID-AALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTISSICFG 1066 (1070)
Q Consensus 998 ~~~Pf~ilDEvd-a~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~v~~~ 1066 (1070)
.++|++||||++ ++||..++..|..+|..+ .+.++|||||++.++..+|.++.|... +|+|+|+.+
T Consensus 495 ~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~~~~~d~~~~l~~~-~~~~~~~~~ 561 (562)
T PHA02562 495 VDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHDPQKFDRHLKMEKV-GRFSVMVEN 561 (562)
T ss_pred CCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhchhhhhcEEEEEEE-CCeeEEeec
Confidence 467899999995 889999999999999988 478999999999999999999988874 689998753
No 37
>KOG0933|consensus
Probab=99.57 E-value=1.1e-07 Score=106.72 Aligned_cols=31 Identities=32% Similarity=0.507 Sum_probs=24.2
Q ss_pred CccccceecccccccCcccccCCCC-eEEEEc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIG 33 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G 33 (1070)
|.|..|.|.+|+||+-+++|.+|+| ||+|+|
T Consensus 1 M~IkeiiLDGFKSYa~rTvI~~fDp~FNAITG 32 (1174)
T KOG0933|consen 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITG 32 (1174)
T ss_pred CchhhhhhcchhcceeeeeccCCCcccchhhc
Confidence 7788888888888888777778877 777655
No 38
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.56 E-value=5.4e-07 Score=113.61 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=37.0
Q ss_pred cCCCe---EEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCc--chHhhcchhee
Q psy16118 998 HPAPF---FVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKE--EFFSHADSLVG 1052 (1070)
Q Consensus 998 ~~~Pf---~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~--~~~~~ad~l~g 1052 (1070)
..+|| |.+|||= -||+.|+..+++|+.. .+-.+|.-+|++ .++..-...|-
T Consensus 1143 ~~~~~~ihwpiDEiG-~L~~~Nv~~l~~~~~~---nnI~li~A~P~~~~~vl~lF~~rY~ 1198 (1201)
T PF12128_consen 1143 GDADFRIHWPIDEIG-KLHPNNVKKLLDMCNS---NNISLISAFPNPDSEVLRLFKNRYI 1198 (1201)
T ss_pred CCCCeEEEeeehhhc-cCChHHHHHHHHHHHh---CCceEEEeCCCCChHHHHHHhhHhh
Confidence 45676 6799996 7999999999998853 467778777765 45554455553
No 39
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.56 E-value=5.3e-12 Score=148.47 Aligned_cols=36 Identities=31% Similarity=0.339 Sum_probs=32.7
Q ss_pred CCccccceecccccccCcc-cccCCCC--eEEEEcCCCCc
Q psy16118 2 SPILQYIEVDNFKSYKGKF-SIGPLKK--FTAVIGPNGSG 38 (1070)
Q Consensus 2 ~m~~~~L~l~~F~~y~~~~-~i~df~~--l~lI~G~nGaG 38 (1070)
||++.+|+|+|||||.+.+ +| +|++ +|+|+||||||
T Consensus 1 ~~~~~~l~l~nf~s~~~~~~~i-~f~~~g~~~i~G~NG~G 39 (562)
T PHA02562 1 MLKFKKIRYKNILSVGNQPIEI-QLDKVKKTLITGKNGAG 39 (562)
T ss_pred CceEEEEEEEcccccCCCceEE-EEcCCCEEEEECCCCCC
Confidence 8999999999999998754 67 8973 99999999999
No 40
>KOG4674|consensus
Probab=99.39 E-value=5.6e-06 Score=101.51 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy16118 260 VSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYE 306 (1070)
Q Consensus 260 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 306 (1070)
+.....++..+...+......+..+...+......+...+..++++.
T Consensus 907 Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~ 953 (1822)
T KOG4674|consen 907 LRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETR 953 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555566666666666666666655555554
No 41
>KOG0018|consensus
Probab=99.37 E-value=3.2e-06 Score=96.53 Aligned_cols=216 Identities=17% Similarity=0.265 Sum_probs=127.1
Q ss_pred ceecccccccCcc-cccCCCC------eEEEEcCCCCc-cc---hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16118 8 IEVDNFKSYKGKF-SIGPLKK------FTAVIGPNGSG-AL---KDDYERLKAEMIQAEEETNMSYLKKKGVVAERKEAK 76 (1070)
Q Consensus 8 L~l~~F~~y~~~~-~i~df~~------l~lI~G~nGaG-~~---~~~y~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~ 76 (1070)
+.=.||.=|.|.+ .|.-.+| |=-|+|.=--- .| +.+-......+.. .-.....|..-..+.+..+
T Consensus 122 VkARNFLVFQGdVE~IA~k~PkElt~LFEEISgSiElK~EYeelK~E~~kAE~~t~~----~~~kkk~I~aEkk~aK~~k 197 (1141)
T KOG0018|consen 122 VKARNFLVFQGDVEKIAGKNPKELTALFEEISGSIELKPEYEELKYEMAKAEETTTG----NYKKKKSIAAEKKEAKEGK 197 (1141)
T ss_pred eeeeeEEEecChHHHHhccCHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh----HhhhhhHHHHHHHHHHhhH
Confidence 3446888888765 3433333 34566643333 12 1111111122222 2222223332223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 77 IEKDEAEKYQRIREEIVAKEVEHQLFKL----YHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRE 152 (1070)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (1070)
.....+..+..-..........|.++++ ......+..+++++..+....+.-...+.....+......++..++..
T Consensus 198 ~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~ 277 (1141)
T KOG0018|consen 198 EEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKK 277 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555556666666766 345567777788888888888877777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 153 LAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYER 228 (1070)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 228 (1070)
+......+.+ ...+-........+..++......+...+.........++.+..++..+......+..++....+
T Consensus 278 i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q 352 (1141)
T KOG0018|consen 278 ISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQ 352 (1141)
T ss_pred HHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777666666 43444455555666666667777777777777777777777777777777777777666655554
No 42
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=99.35 E-value=1.9e-12 Score=116.73 Aligned_cols=119 Identities=29% Similarity=0.541 Sum_probs=100.8
Q ss_pred CCcceecccccccchhhHHHHHHHHhccCCCeEEeCCHHHHHHHHHHHhhcCCCCcceecCCCccCCcchhhhhccCCCC
Q psy16118 462 SGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTKPLKERLRNIRDPK 541 (1070)
Q Consensus 462 ~~~~g~~~~~~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (1070)
+|++|.+.+++.+ +++|..|+++++|..++++||++...+..++++++..+.|+.+|+|++.+..............++
T Consensus 2 ~gv~G~l~dli~v-~~~~~~Ave~~LG~~l~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~~~~~~~~~~~~~~ 80 (120)
T PF06470_consen 2 PGVLGRLADLIEV-DPKYEKAVEAALGGRLQAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSRSSASSADQIRPPG 80 (120)
T ss_dssp TTEEEEGGGSEEE-SGGGHHHHHHHHGGGGGSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGGTTSCCCGGHHSTT
T ss_pred CCeeeeHHhceec-CHHHHHHHHHHHHHhhceEEECcHHHHHHHHHHHhhccCCeEEEEECccccccccccchhhccCCc
Confidence 5899999999984 999999999999999999999999999999999999999999999999886544322111101235
Q ss_pred CcceeeeeeccCcchHHHHHHHHhCCeEecCChHHHHhhh
Q psy16118 542 NVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVA 581 (1070)
Q Consensus 542 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 581 (1070)
+..++.++|+++++.+.+.+.+++|++++|++++.|..++
T Consensus 81 ~~~~l~d~i~~~d~~~~~~~~~llg~~~vv~~l~~A~~la 120 (120)
T PF06470_consen 81 GAGPLIDLIEFPDEEYRPALEFLLGDVVVVDDLEEARKLA 120 (120)
T ss_dssp SEEEGGGGEEESCGGGHHHHHHHHTTEEEESSHHHHHHHH
T ss_pred chHHHHHhcccCcHHHHHHHHHHcCCEEEECCHHHHHHhC
Confidence 6789999999944899999999999999999999998763
No 43
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.32 E-value=1.9e-05 Score=99.00 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=31.9
Q ss_pred CC--CccccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 1 MS--PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 1 ~~--m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
|| ++|.+|.|.||++|.+. ++ ||.+ +++|+|+||||
T Consensus 1 ~~~~~ki~~l~l~N~~~~~~~-~~-~f~~~~~~l~G~NGaG 39 (1486)
T PRK04863 1 MIERGKFRSLTLVNWNGFFAR-TF-DLDELVTTLSGGNGAG 39 (1486)
T ss_pred CCCCceeeEEEEecccCccce-EE-EecCCeEEEECCCCCC
Confidence 55 67789999999999876 67 8988 99999999999
No 44
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=99.30 E-value=1.5e-06 Score=100.27 Aligned_cols=75 Identities=20% Similarity=0.304 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhhccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16118 885 KLAKSIQEMTSRLQTIQAPNLRAME-KLEHAKENLMKTNEEFENARKRAKKAKANFDRIKKERYDKFTRCFEHVSNEIDG 963 (1070)
Q Consensus 885 ~l~~~l~~l~~~l~~l~~~n~~a~~-e~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~~i~~~~~~ 963 (1070)
.+...+..+...+.. ||+|+.++. +|..+..++.++..+..++......+...|.. ..+|..+|..|+..|..
T Consensus 452 ~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy-----~nRfr~~~~~V~~~f~~ 525 (569)
T PRK04778 452 EVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY-----ANRYRSDNEEVAEALNE 525 (569)
T ss_pred HHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccCCCCHHHHHHHHH
Confidence 678999999999999 999999999 99999999999999999999998888888877 56899999999999887
Q ss_pred cc
Q psy16118 964 AG 965 (1070)
Q Consensus 964 ~f 965 (1070)
--
T Consensus 526 Ae 527 (569)
T PRK04778 526 AE 527 (569)
T ss_pred HH
Confidence 54
No 45
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.28 E-value=1.9e-07 Score=110.21 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=49.0
Q ss_pred hhhcccc--CCCeEEeecccccCChhhHHHHHH-HHHHhcCCCceEEEEecCcchHhhc--------chheeecc-CCcc
Q psy16118 992 IVSHRYH--PAPFFVLDEIDAALDNTNIGKVAS-YIVTKTQDSLQTIVISLKEEFFSHA--------DSLVGICP-GSVT 1059 (1070)
Q Consensus 992 ~al~~~~--~~Pf~ilDEvda~lD~~n~~~~~~-~l~~~~~~~~Q~i~iT~~~~~~~~a--------d~l~gVt~-~~~g 1059 (1070)
+||+.+. +.|| |||++++.||..++..++. ++... ..|+||+||..++-... ..-|-+.. ...+
T Consensus 566 ~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~---~~QvIils~d~e~~~~~~~~l~~~i~~~y~l~y~~~~~ 641 (650)
T TIGR03185 566 WGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA---SHQVLLLSTDEEVDEKHYNLLKPNISHEYLLEFDDEAR 641 (650)
T ss_pred HHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc---CCeEEEEechHhhCHHHHHHHHHHhhhheEEEecCCcC
Confidence 6776554 4787 5699999999999999884 77654 48999999997765521 11233333 4555
Q ss_pred ceeeecc
Q psy16118 1060 ISSICFG 1066 (1070)
Q Consensus 1060 vs~v~~~ 1066 (1070)
-|.|-.|
T Consensus 642 ~t~i~~g 648 (650)
T TIGR03185 642 TSVVTEG 648 (650)
T ss_pred ceeecCC
Confidence 5666666
No 46
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.23 E-value=2.1e-05 Score=91.00 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy16118 41 KDDYERLKAEMIQAEEETNMSYLKKKGV 68 (1070)
Q Consensus 41 ~~~y~~~~~~~~~~~~~~~~~~~~i~~l 68 (1070)
..+|..++.++......+......|+.+
T Consensus 9 q~E~e~L~~ele~~~~~l~~~~~~i~~f 36 (775)
T PF10174_consen 9 QRENERLRRELERKQSKLGSSMNSIKTF 36 (775)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHhcc
Confidence 4566667777777666666666666553
No 47
>PRK03918 chromosome segregation protein; Provisional
Probab=99.22 E-value=5.3e-05 Score=94.84 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=31.2
Q ss_pred CccccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
|+|.+|+|.||+||.+ .+| +|++ +|+|+||||||
T Consensus 1 m~i~~l~i~nf~~~~~-~~i-~f~~g~~~i~G~nG~G 35 (880)
T PRK03918 1 MKIEELKIKNFRSHKS-SVV-EFDDGINLIIGQNGSG 35 (880)
T ss_pred CeeEEEEEeCccCccC-ceE-ecCCCcEEEEcCCCCC
Confidence 8999999999999986 467 8986 99999999999
No 48
>KOG4674|consensus
Probab=99.19 E-value=6.5e-05 Score=92.58 Aligned_cols=57 Identities=16% Similarity=0.367 Sum_probs=23.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy16118 649 ESELNTVQSTIKGLEIRLNYSRQ-------DLQNTKSQIAKLEAEIDALNARADATEPKIKAIE 705 (1070)
Q Consensus 649 ~~~~~~l~~~~~~~~~~l~~~~~-------~l~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~ 705 (1070)
..++..++..+..+...+..+.. ++..+...+..+..++..+......+...|....
T Consensus 660 ~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~ 723 (1822)
T KOG4674|consen 660 QEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQE 723 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333 3333444444444444444444444443333333
No 49
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.12 E-value=9.1e-12 Score=148.54 Aligned_cols=73 Identities=22% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16118 343 LDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGS 415 (1070)
Q Consensus 343 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~ 415 (1070)
+..+...+......+..+.+....+..++..+...++........+......+...+.++......+...++.
T Consensus 330 L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~ 402 (859)
T PF01576_consen 330 LQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDA 402 (859)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444444444444444444444433333333333333333333333333
No 50
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.12 E-value=9.1e-12 Score=148.52 Aligned_cols=112 Identities=22% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 323 TEYTNLKAEATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDN 402 (1070)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 402 (1070)
..+......+......+..++..+...+..+...+..+.+....+..++..+...++.....+..++.....++.++.++
T Consensus 394 ~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El 473 (859)
T PF01576_consen 394 EELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEEL 473 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHH
Confidence 33444444455555555666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy16118 403 KKLKEELNSDVGSSKNRVQELQKELEQVIEEL 434 (1070)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l 434 (1070)
...+.++...+.........+...+..+...+
T Consensus 474 ~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~ 505 (859)
T PF01576_consen 474 QEQLEEAEDALEAEEQKKLRLQVELQQLRQEI 505 (859)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555555555555555444
No 51
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.11 E-value=0.00019 Score=91.13 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=15.2
Q ss_pred ecccccccCcc-cccCCCCeEEEEcCCCCc
Q psy16118 10 VDNFKSYKGKF-SIGPLKKFTAVIGPNGSG 38 (1070)
Q Consensus 10 l~~F~~y~~~~-~i~df~~l~lI~G~nGaG 38 (1070)
|.-|-| |.+ .| +.++-+-|||.||+|
T Consensus 3 i~s~~~--G~v~El-~lDG~t~i~GTNG~G 29 (1201)
T PF12128_consen 3 IDSHLP--GVVAEL-KLDGHTHICGTNGVG 29 (1201)
T ss_pred ecCCCC--CceEEE-ecCCceeeecCCCCc
Confidence 344555 555 34 555666666666666
No 52
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.03 E-value=2e-05 Score=93.36 Aligned_cols=35 Identities=29% Similarity=0.582 Sum_probs=31.9
Q ss_pred CccccceecccccccCcccccCCC-----CeEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLK-----KFTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~-----~l~lI~G~nGaG 38 (1070)
|+|.+|+|.|||+|.|.+.+ +|+ ++++|+||||+|
T Consensus 1 M~i~~l~l~nf~~~~~~~~~-~~~~~~~~~~~~i~G~Ng~G 40 (650)
T TIGR03185 1 MIILQLTLENFGPYRGRQTF-DLSPSSPKPIILIGGLNGAG 40 (650)
T ss_pred CcccEEEEeceEEEcCCcee-eeecCCCCeEEEEECCCCCC
Confidence 99999999999999998777 775 289999999999
No 53
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.92 E-value=1.8e-09 Score=105.94 Aligned_cols=65 Identities=35% Similarity=0.534 Sum_probs=61.5
Q ss_pred ccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCcccee
Q psy16118 997 YHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTISS 1062 (1070)
Q Consensus 997 ~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~ 1062 (1070)
+.|.|+++|||++++||..++..+..+|.++. .+.+||+|||+..++..||.+|+|+|.++|+|+
T Consensus 133 ~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~-~~~tiIiitH~~~~~~~~d~v~~~~~~~~~~~~ 197 (197)
T cd03278 133 VRPSPFCVLDEVDAALDDANVERFARLLKEFS-KETQFIVITHRKGTMEAADRLYGVTMQESGVSK 197 (197)
T ss_pred cCCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-cCCEEEEEECCHHHHhhcceEEEEEeccCCCCC
Confidence 46888999999999999999999999999997 778999999999999999999999999999986
No 54
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.87 E-value=3.1e-09 Score=109.76 Aligned_cols=65 Identities=37% Similarity=0.532 Sum_probs=61.3
Q ss_pred ccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccceee
Q psy16118 997 YHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTISSI 1063 (1070)
Q Consensus 997 ~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~v 1063 (1070)
+.|+++++|||++++||..++..+.++|..+. .+.++|+|||++.++..||+.||||+. +|+|.|
T Consensus 186 ~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~~~~~~~d~v~~~~~~-~~~~~~ 250 (251)
T cd03273 186 FKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKEGMFNNANVLFRTRFV-DGTSTV 250 (251)
T ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHhCCEEEEEEee-CCEEec
Confidence 36888999999999999999999999999997 789999999999999999999999997 899987
No 55
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.83 E-value=0.00075 Score=78.59 Aligned_cols=101 Identities=7% Similarity=0.127 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16118 336 AGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGS 415 (1070)
Q Consensus 336 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~ 415 (1070)
+..++.+|..++..........+.+.+.+..........+..++.+..++..-..++..+..++..+..+..+....+..
T Consensus 247 l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~ 326 (775)
T PF10174_consen 247 LRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEV 326 (775)
T ss_pred HHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33344444444444443333334444444444444444444444444444444444444444444444444444444444
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q psy16118 416 SKNRVQELQKELEQVIEELGD 436 (1070)
Q Consensus 416 ~~~~~~~l~~~~~~~~~~l~~ 436 (1070)
++..+...+.....+...+..
T Consensus 327 lkesl~~ke~~~~~Lqsdve~ 347 (775)
T PF10174_consen 327 LKESLRAKEQEAEMLQSDVEA 347 (775)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 444444444444444444433
No 56
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.81 E-value=0.0004 Score=75.96 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy16118 415 SSKNRVQELQKELEQVIE 432 (1070)
Q Consensus 415 ~~~~~~~~l~~~~~~~~~ 432 (1070)
.+..+.+.|...+..+..
T Consensus 435 ql~~EkQeL~~yi~~Le~ 452 (546)
T PF07888_consen 435 QLQEEKQELLEYIERLEQ 452 (546)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 57
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.72 E-value=2.1e-08 Score=103.04 Aligned_cols=69 Identities=62% Similarity=0.919 Sum_probs=62.9
Q ss_pred ccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeecc-CCccceeeec
Q psy16118 997 YHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICP-GSVTISSICF 1065 (1070)
Q Consensus 997 ~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~-~~~gvs~v~~ 1065 (1070)
+.|.|+++|||++++||...+..+.++|.+++..+.++|+|||++.++..||.+|+|++ .+.|.|+++.
T Consensus 175 ~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~~~~~~~~~~~~ 244 (247)
T cd03275 175 YQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYRDQECNSSKVLT 244 (247)
T ss_pred cCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEecCCCCcceEEe
Confidence 35788999999999999999999999999997337899999999999999999999999 7789999874
No 58
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.70 E-value=6.8e-05 Score=75.78 Aligned_cols=102 Identities=23% Similarity=0.414 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 121 KKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQ 200 (1070)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 200 (1070)
++.+++.....+..+...+............++..+...+..+...+......+.....++..+..........+..++.
T Consensus 6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~ 85 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLEN 85 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333344444444333333344444455555555555555555555555555555555555555555555555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q psy16118 201 ANEAHNKDIADLETQLADVRKR 222 (1070)
Q Consensus 201 ~~~~~~~~~~~~~~~l~~l~~~ 222 (1070)
........+..++.++......
T Consensus 86 r~~~~eeri~~lE~~l~ea~~~ 107 (237)
T PF00261_consen 86 REQSDEERIEELEQQLKEAKRR 107 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 59
>PRK01156 chromosome segregation protein; Provisional
Probab=98.68 E-value=0.004 Score=77.81 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=31.4
Q ss_pred CccccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
|+|.+|+|.||+||.+ ++| +|++ +|+|+||||||
T Consensus 1 M~i~~l~l~NF~s~~~-~~i-~f~~gi~~I~G~NGsG 35 (895)
T PRK01156 1 MIIKRIRLKNFLSHDD-SEI-EFDTGINIITGKNGAG 35 (895)
T ss_pred CeEEEEEEeCccCCCC-ceE-ecCCCeEEEECCCCCC
Confidence 8999999999999975 577 8987 99999999999
No 60
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.57 E-value=9e-08 Score=91.97 Aligned_cols=66 Identities=45% Similarity=0.672 Sum_probs=58.0
Q ss_pred ccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccce
Q psy16118 995 HRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTIS 1061 (1070)
Q Consensus 995 ~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs 1061 (1070)
+.+.++|++||||++++||..+...+.++|..++..+.++|+|||++.++..||++|+|++. +++|
T Consensus 112 ~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~~-~~~~ 177 (178)
T cd03239 112 QEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLFV-HGVS 177 (178)
T ss_pred hcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEEe-CCcc
Confidence 34578899999999999999999999999999862348999999999999999999999994 4555
No 61
>KOG0977|consensus
Probab=98.56 E-value=0.001 Score=72.83 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=33.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy16118 39 ALKDDYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEA 82 (1070)
Q Consensus 39 ~~~~~y~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~ 82 (1070)
.++.--..-|.++..+.+++..++++|+.|..+-..|......+
T Consensus 32 ~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~l 75 (546)
T KOG0977|consen 32 PIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLL 75 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555677899999999999999999988887766655543
No 62
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.53 E-value=0.0025 Score=68.53 Aligned_cols=137 Identities=18% Similarity=0.198 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHH
Q psy16118 48 KAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDIKELEDELDKKKGEVEK 127 (1070)
Q Consensus 48 ~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 127 (1070)
+.++..+.++....+++|+.+..+-..|......+..-. ..... .........+..+...+..+..+...+..++..
T Consensus 3 K~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~--~~~~~-~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~ 79 (312)
T PF00038_consen 3 KEELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKK--GEEVS-RIKEMYEEELRELRRQIDDLSKEKARLELEIDN 79 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H-HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcc--cccCc-ccccchhhHHHHhHHhhhhHHHHhhHHhhhhhh
Confidence 356777888899999999999888877766655543221 00000 011222345556667777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH
Q psy16118 128 IERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKK 187 (1070)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (1070)
+...+..+..++.........+..++..+...++........+...+..+...+..+...
T Consensus 80 l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~ 139 (312)
T PF00038_consen 80 LKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQN 139 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhh
Confidence 777777777777777666666666677666666666555555555566665555544443
No 63
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.50 E-value=0.0024 Score=68.73 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHH
Q psy16118 152 ELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASA 191 (1070)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 191 (1070)
++..+...++.+......+...+..+...+..++.++...
T Consensus 55 el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e 94 (312)
T PF00038_consen 55 ELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE 94 (312)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3333444444443333333333333333333333333333
No 64
>KOG0962|consensus
Probab=98.46 E-value=0.01 Score=71.62 Aligned_cols=37 Identities=19% Similarity=0.483 Sum_probs=29.7
Q ss_pred CCccccceeccccccc--CcccccCCCCeEEEEcCCCCc
Q psy16118 2 SPILQYIEVDNFKSYK--GKFSIGPLKKFTAVIGPNGSG 38 (1070)
Q Consensus 2 ~m~~~~L~l~~F~~y~--~~~~i~df~~l~lI~G~nGaG 38 (1070)
|-.|.+|.|.|..||. +.++|.+|+|++||.||||+|
T Consensus 1 Ms~i~klsI~GIRSf~~~d~~~i~F~sPlTLIvG~NG~G 39 (1294)
T KOG0962|consen 1 MSSIDKLSIRGIRSFDDKDRNTIEFFSPLTLIVGANGTG 39 (1294)
T ss_pred CchhHhhHhhcccccCCcccceeeecCCeeeEecCCCCC
Confidence 4567788888877775 455786678999999999999
No 65
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.39 E-value=4.4e-07 Score=94.93 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=61.9
Q ss_pred cCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccceeee
Q psy16118 998 HPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTISSIC 1064 (1070)
Q Consensus 998 ~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~v~ 1064 (1070)
.++|++||||++++||......+.++|..++ ...++|+|||++.++..||.+|.|..+..|||+++
T Consensus 191 ~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~-~~~tii~isH~~~~~~~~d~~~~l~~~~~~~~~~~ 256 (276)
T cd03241 191 DAVPTLIFDEIDTGISGEVAQAVGKKLKELS-RSHQVLCITHLPQVAAMADNHFLVEKEVEGGRTVT 256 (276)
T ss_pred CCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEechHHHHHhcCcEEEEEEecCCCeEEE
Confidence 3889999999999999999999999999997 78899999999999999999999999888988865
No 66
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.37 E-value=0.012 Score=68.40 Aligned_cols=20 Identities=5% Similarity=0.195 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16118 177 SKERVSHIQKKLASAKKSLV 196 (1070)
Q Consensus 177 l~~~~~~~~~~~~~~~~~~~ 196 (1070)
+...+..+..++......+.
T Consensus 254 i~~~i~~l~~~i~~~~~~l~ 273 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLE 273 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555444333
No 67
>PRK10869 recombination and repair protein; Provisional
Probab=98.37 E-value=6.3e-05 Score=86.22 Aligned_cols=32 Identities=25% Similarity=0.589 Sum_probs=28.2
Q ss_pred cccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 5 LQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 5 ~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
+..|+|.||+.|. ...| +|.+ +|+|+||||||
T Consensus 2 L~~L~I~nf~~i~-~~~i-~f~~glnvitGetGaG 34 (553)
T PRK10869 2 LAQLTISNFAIVR-ELEI-DFQSGMTVITGETGAG 34 (553)
T ss_pred ccEEEEcccccce-eeEE-ecCCCcEEEECCCCCC
Confidence 4689999999994 5677 8987 99999999999
No 68
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.32 E-value=8.6e-05 Score=86.21 Aligned_cols=32 Identities=22% Similarity=0.579 Sum_probs=27.9
Q ss_pred cccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 5 LQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 5 ~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
+.+|+|.||++|.. ..| +|.+ +++|+||||||
T Consensus 2 l~~l~i~nf~~~~~-~~i-~f~~g~~vitG~nGaG 34 (563)
T TIGR00634 2 LTELRINNFALIRV-LTV-EFERGLTVLTGETGAG 34 (563)
T ss_pred ceEEEEcceeeeee-eEE-ecCCCeEEEECCCCCC
Confidence 56899999999964 566 7986 99999999999
No 69
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.27 E-value=1.4e-06 Score=86.61 Aligned_cols=60 Identities=52% Similarity=0.806 Sum_probs=56.1
Q ss_pred ccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCC
Q psy16118 997 YHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGS 1057 (1070)
Q Consensus 997 ~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~ 1057 (1070)
+.|.|+++|||++++||...+..+.++|.+++ ...++|+|||++.++..||++++|++..
T Consensus 147 ~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~~~~~~~d~v~~~~~~~ 206 (212)
T cd03274 147 YKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRNNMFELADRLVGIYKTN 206 (212)
T ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcHHHHHhCCEEEEEEecC
Confidence 36788999999999999999999999999997 8899999999999999999999999853
No 70
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.26 E-value=1.2e-06 Score=90.44 Aligned_cols=65 Identities=37% Similarity=0.537 Sum_probs=60.0
Q ss_pred ccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccceee
Q psy16118 997 YHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTISSI 1063 (1070)
Q Consensus 997 ~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~v 1063 (1070)
..|+|+++|||++++||...+..+..+|.++. .+++||++||.+.++..||.++.++-. +|||+|
T Consensus 178 ~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~-~~~~ii~~~h~~~~~~~~d~i~~l~~~-~~~~~~ 242 (243)
T cd03272 178 CDPAPFYLFDEIDAALDAQYRTAVANMIKELS-DGAQFITTTFRPELLEVADKFYGVKFR-NKVSTI 242 (243)
T ss_pred cCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHhhCCEEEEEEEE-CCEEee
Confidence 35788999999999999999999999999997 689999999999999999999999986 499986
No 71
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.24 E-value=0.016 Score=64.08 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=27.8
Q ss_pred CccccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
++.-+|||-||..|.-.+. |.+. ++..+|-||||
T Consensus 5 GKfrSLTliNWNGFFARTF--DlDeLVTTLSGGNGAG 39 (1480)
T COG3096 5 GKFRSLTLINWNGFFARTF--DLDELVTTLSGGNGAG 39 (1480)
T ss_pred cccceeeEeeccchhhhhc--cHHHHHHhccCCCCCc
Confidence 5678899999999876543 5655 79999999999
No 72
>KOG0977|consensus
Probab=98.17 E-value=0.0049 Score=67.76 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHH
Q psy16118 155 KVDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAK 192 (1070)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 192 (1070)
.+...+++.......+...+..+..+++.++..+....
T Consensus 96 ~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~ 133 (546)
T KOG0977|consen 96 TARKLLDETARERAKLEIEITKLREELKELRKKLEKAE 133 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333333333333333333333334443333333333
No 73
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.14 E-value=3.4e-06 Score=80.29 Aligned_cols=64 Identities=31% Similarity=0.401 Sum_probs=56.3
Q ss_pred cCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccce
Q psy16118 998 HPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTIS 1061 (1070)
Q Consensus 998 ~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs 1061 (1070)
.+.|+++|||+++++|..++..+..+|.++....+++|++||...++..+|.+|.+.+...|+|
T Consensus 98 ~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~~~~~~~ 161 (162)
T cd03227 98 KPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKKVITGVY 161 (162)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEEEecccc
Confidence 3778999999999999999999999999875245899999999999999999999988655554
No 74
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.11 E-value=4.1e-06 Score=82.92 Aligned_cols=67 Identities=27% Similarity=0.301 Sum_probs=57.9
Q ss_pred cccCCCeEEeecccccCChhhHH-HHHHHHHHhcCC-CceEEEEecCcchHhhcchheeeccCCcccee
Q psy16118 996 RYHPAPFFVLDEIDAALDNTNIG-KVASYIVTKTQD-SLQTIVISLKEEFFSHADSLVGICPGSVTISS 1062 (1070)
Q Consensus 996 ~~~~~Pf~ilDEvda~lD~~n~~-~~~~~l~~~~~~-~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~ 1062 (1070)
-..+.|+++|||++++||..++. .+.++|.++... ..++|+|||.+..+..||..|.+.+...|-|+
T Consensus 136 l~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~~~~~~~ 204 (204)
T cd03240 136 FGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKDGRQKSR 204 (204)
T ss_pred hccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeCCCCCCC
Confidence 34688999999999999999999 999999998622 67999999999999999999988886546553
No 75
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.10 E-value=0.038 Score=63.30 Aligned_cols=10 Identities=40% Similarity=0.547 Sum_probs=6.2
Q ss_pred cccccCcccc
Q psy16118 13 FKSYKGKFSI 22 (1070)
Q Consensus 13 F~~y~~~~~i 22 (1070)
|.|.++.+++
T Consensus 4 f~SVk~Avs~ 13 (522)
T PF05701_consen 4 FESVKEAVSL 13 (522)
T ss_pred ChHHHHHHHH
Confidence 6666666555
No 76
>PRK11637 AmiB activator; Provisional
Probab=98.04 E-value=0.0074 Score=67.77 Aligned_cols=13 Identities=8% Similarity=-0.041 Sum_probs=9.4
Q ss_pred ceEEEEecCcchH
Q psy16118 1032 LQTIVISLKEEFF 1044 (1070)
Q Consensus 1032 ~Q~i~iT~~~~~~ 1044 (1070)
..+|||.|-.+++
T Consensus 360 G~~vii~hg~g~~ 372 (428)
T PRK11637 360 GLVVVVEHGKGDM 372 (428)
T ss_pred ccEEEEEeCCCcE
Confidence 3789999966544
No 77
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.03 E-value=0.039 Score=63.46 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy16118 415 SSKNRVQELQKELEQVIEEL 434 (1070)
Q Consensus 415 ~~~~~~~~l~~~~~~~~~~l 434 (1070)
..+..+..+...-..+...+
T Consensus 290 ~~qe~Lea~~qqNqqL~~ql 309 (617)
T PF15070_consen 290 EAQEHLEALSQQNQQLQAQL 309 (617)
T ss_pred HHHHHHHHHHhhhHHHHHHH
Confidence 33344444444444444444
No 78
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.00 E-value=0.064 Score=62.17 Aligned_cols=56 Identities=16% Similarity=0.325 Sum_probs=28.0
Q ss_pred HHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 103 KLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQ 158 (1070)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (1070)
++......+..+.+.+.....++..+...+..+...-..-+..+..+...+..++.
T Consensus 95 rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk 150 (560)
T PF06160_consen 95 RFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRK 150 (560)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555444444444444444444443
No 79
>PF13166 AAA_13: AAA domain
Probab=97.95 E-value=0.0028 Score=77.26 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=44.9
Q ss_pred CCCeEEeecccccCChhhHHHHHHHHHHh---cCCCceEEEEecCcchHhhcchhe
Q psy16118 999 PAPFFVLDEIDAALDNTNIGKVASYIVTK---TQDSLQTIVISLKEEFFSHADSLV 1051 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~~~~~~~l~~~---~~~~~Q~i~iT~~~~~~~~ad~l~ 1051 (1070)
.-+++|||.+=.-||..++..++.+|... + ...||||.||+-.+|..-...+
T Consensus 527 ~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~-~~~QviIlTHn~~F~~~l~~~~ 581 (712)
T PF13166_consen 527 KKKIIVIDDPISSLDHNRRFGVASRLKEEIKNS-KFRQVIILTHNLYFFKELKKWF 581 (712)
T ss_pred cCceEEECCCCCCCCHHHHHHHHHHHHHHhhcC-CcceEEEEeCcHHHHHHHHHHh
Confidence 44689999999999999999999999999 5 8899999999988776544443
No 80
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.95 E-value=1.3e-05 Score=76.36 Aligned_cols=73 Identities=22% Similarity=0.312 Sum_probs=60.3
Q ss_pred hhh-h-----hhhccccC--CCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCcc
Q psy16118 988 VST-T-----IVSHRYHP--APFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVT 1059 (1070)
Q Consensus 988 LSG-t-----~al~~~~~--~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~g 1059 (1070)
||| . ||...+.+ +++++|||++++||..++..|.++|+++...+.-+|+|||+......||.++-+.. .+|
T Consensus 88 LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~-g~~ 166 (176)
T cd03238 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGP-GSG 166 (176)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECC-CCC
Confidence 888 2 55555667 89999999999999999999999999985246789999999999999999876654 456
Q ss_pred ce
Q psy16118 1060 IS 1061 (1070)
Q Consensus 1060 vs 1061 (1070)
.+
T Consensus 167 ~~ 168 (176)
T cd03238 167 KS 168 (176)
T ss_pred CC
Confidence 54
No 81
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.93 E-value=1.4e-05 Score=75.98 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=56.4
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhc-chheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHA-DSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~a-d~l~gVt 1054 (1070)
||| ++|.....+.|++||||++++||..++..+.++|..+.....++|+|||+....... |.++-+.
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~ 154 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLK 154 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 788 166666778899999999999999999999999999862347999999999998885 8877654
No 82
>KOG0976|consensus
Probab=97.91 E-value=0.07 Score=59.76 Aligned_cols=70 Identities=10% Similarity=0.088 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 340 LQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEEL 409 (1070)
Q Consensus 340 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l 409 (1070)
..++..++..+.+.......+...+..++.+...+......++..+...+..++.+.....+.+.++..+
T Consensus 329 trqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidel 398 (1265)
T KOG0976|consen 329 TRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDEL 398 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444333333333333333333333333333333333333
No 83
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.91 E-value=0.0001 Score=88.42 Aligned_cols=85 Identities=20% Similarity=0.160 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhccCCCHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 885 KLAKSIQEMTSRLQTIQAPNLR---A--MEKLEHAKENLMKTNEEFENARKRAKKAKANFDRIKKERYDKFTRCFEHVSN 959 (1070)
Q Consensus 885 ~l~~~l~~l~~~l~~l~~~n~~---a--~~e~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~~i~~ 959 (1070)
.++.+...|...+..++..+.. + ...+.....++..+..++..+.+ .+.+++........++.+.|..
T Consensus 570 ~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ek-------r~~RLkevf~~ks~eFr~av~~ 642 (722)
T PF05557_consen 570 ALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEK-------RNQRLKEVFKAKSQEFREAVYS 642 (722)
T ss_dssp HHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777554321111 1 12233344445445544444443 2333332222222333333333
Q ss_pred HhhhcccccCCCceeec
Q psy16118 960 EIDGAGSESVLPRPFLG 976 (1070)
Q Consensus 960 ~~~~~f~~~~~~~~~l~ 976 (1070)
-|+--..+.++|.+.|.
T Consensus 643 llGyki~~~~~~~~rl~ 659 (722)
T PF05557_consen 643 LLGYKIDFMPNGRVRLT 659 (722)
T ss_dssp HHSEEEEEETTTEEEEE
T ss_pred HhcceeeecCCCeEEEE
Confidence 33322233567777776
No 84
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.90 E-value=0.034 Score=55.88 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy16118 182 SHIQKKLASAK 192 (1070)
Q Consensus 182 ~~~~~~~~~~~ 192 (1070)
+.+..++..++
T Consensus 65 deineev~elK 75 (294)
T COG1340 65 DEINEEVQELK 75 (294)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 85
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.90 E-value=1.7e-05 Score=81.10 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=61.6
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHh-hcchheeeccCCcc
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFS-HADSLVGICPGSVT 1059 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~-~ad~l~gVt~~~~g 1059 (1070)
||| - +|.+...++++++|||++++||..++..+.++|+.+.. .+.-+|+|||....+. .||.++-+ .+++|
T Consensus 116 LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l-~~~~~ 194 (246)
T cd03237 116 LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVF-EGEPS 194 (246)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-cCCCe
Confidence 888 1 77777889999999999999999999999999999852 2578999999987766 79988744 35566
Q ss_pred ceeee
Q psy16118 1060 ISSIC 1064 (1070)
Q Consensus 1060 vs~v~ 1064 (1070)
+.-++
T Consensus 195 ~~~~~ 199 (246)
T cd03237 195 VNGVA 199 (246)
T ss_pred eEEEe
Confidence 65443
No 86
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.89 E-value=1.8e-05 Score=76.45 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=57.2
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| ++|...+.+.|+++|||++++||..++..+.++|.++...++.+|+|||....+. .||..+-+.
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~ 169 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILN 169 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEe
Confidence 788 1777778899999999999999999999999999998624578999999988766 789876553
No 87
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.88 E-value=2.2e-05 Score=75.89 Aligned_cols=67 Identities=22% Similarity=0.272 Sum_probs=58.1
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . +|.....+.|+++|||++++||...+..+.++|..+...+.-+|+|||+...+..||..+-+.
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~ 169 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLE 169 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEE
Confidence 888 1 777778899999999999999999999999999998634678999999999999999876543
No 88
>KOG4643|consensus
Probab=97.88 E-value=0.1 Score=60.56 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy16118 43 DYERLKAEMIQAEEETNMSYLKKKGV 68 (1070)
Q Consensus 43 ~y~~~~~~~~~~~~~~~~~~~~i~~l 68 (1070)
......+.+........+..+...++
T Consensus 178 elAdle~kir~LrqElEEK~enll~l 203 (1195)
T KOG4643|consen 178 ELADLEKKIRTLRQELEEKFENLLRL 203 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 89
>PRK11637 AmiB activator; Provisional
Probab=97.87 E-value=0.018 Score=64.74 Aligned_cols=12 Identities=0% Similarity=0.133 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q psy16118 624 EMGNLKAQKEKL 635 (1070)
Q Consensus 624 ~l~~l~~~~~~l 635 (1070)
++..+..++..+
T Consensus 48 ~l~~l~~qi~~~ 59 (428)
T PRK11637 48 QLKSIQQDIAAK 59 (428)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 90
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.87 E-value=2.2e-05 Score=74.81 Aligned_cols=67 Identities=24% Similarity=0.269 Sum_probs=57.1
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| +||...+.+.|+++|||++++||..++..+.++|+++...+.-+|+|||+... ...||+.+-+.
T Consensus 83 LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~ 156 (163)
T cd03216 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLR 156 (163)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 27777788999999999999999999999999999985246789999999875 56799877654
No 91
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.86 E-value=9.3e-06 Score=60.36 Aligned_cols=31 Identities=35% Similarity=0.671 Sum_probs=27.7
Q ss_pred ccceecccccccCcccccCCCC---eEEEEcCCCCc
Q psy16118 6 QYIEVDNFKSYKGKFSIGPLKK---FTAVIGPNGSG 38 (1070)
Q Consensus 6 ~~L~l~~F~~y~~~~~i~df~~---l~lI~G~nGaG 38 (1070)
.+|.|.||++|.+ +++ +|++ +++|+||||||
T Consensus 2 ~rl~L~Nw~~f~~-~~~-~~~~~g~~tli~G~nGsG 35 (62)
T PF13555_consen 2 TRLQLVNWGSFDG-ETI-DFDPRGDVTLITGPNGSG 35 (62)
T ss_pred cEEEEeccCccCC-eEE-eecCCCcEEEEECCCCCC
Confidence 5799999999998 677 8873 89999999999
No 92
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.83 E-value=2.4e-05 Score=76.05 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=56.6
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchHh-hcchheee
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFFS-HADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~~-~ad~l~gV 1053 (1070)
||| . +|.....+.|++||||++++||..++..+.++|..+... ++-+|+|||+...+. .+|..+-+
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 174 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVL 174 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 888 1 777778899999999999999999999999999998722 489999999988877 78987544
No 93
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.83 E-value=3.5e-05 Score=74.28 Aligned_cols=66 Identities=21% Similarity=0.274 Sum_probs=57.7
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . +|...+.+.++++|||++++||..++..+.++|..+. .+.-+|+|||....+..||..+-+.
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~~~~l~ 168 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLSTIRDADRIIVLD 168 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHhCCEEEEEc
Confidence 788 1 6766677889999999999999999999999999996 6789999999999998899876554
No 94
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.82 E-value=2.7e-05 Score=76.69 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=56.9
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc--hHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE--FFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~--~~~~ad~l~gVt 1054 (1070)
||| . ||...+.+.|+++|||++++||..++..+.++|..++..+.-+|+|||+.. +...+|..+.+.
T Consensus 109 LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~ 183 (192)
T cd03232 109 LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLK 183 (192)
T ss_pred CCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEc
Confidence 788 2 777777888999999999999999999999999998634679999999987 378899876554
No 95
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.82 E-value=2.5e-05 Score=76.10 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=57.0
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|.+...+.|+++|||++++||..++..+.++|..+... +.-+|+|||+...+ ..||..|-+.
T Consensus 98 LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~ 172 (180)
T cd03214 98 LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLK 172 (180)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1 776677889999999999999999999999999998622 67999999998875 7899887554
No 96
>KOG0946|consensus
Probab=97.82 E-value=0.084 Score=59.69 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=13.5
Q ss_pred HHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy16118 267 LASAKKSLVEVRQANEAHNKDIADLETQLADV 298 (1070)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 298 (1070)
+.+....+.....++..++.++..+....+..
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~ 832 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTLLERTSAA 832 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444444444444333
No 97
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.82 E-value=0.048 Score=54.87 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 654 TVQSTIKGLEIRLNYSRQDLQNTKSQIAKLEAEIDALN 691 (1070)
Q Consensus 654 ~l~~~~~~~~~~l~~~~~~l~~~~~~l~~l~~~~~~~~ 691 (1070)
.+......+...+..+......+....+.+..++..+.
T Consensus 38 ~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK 75 (294)
T COG1340 38 ELAEKRDELNAKVRELREKAQELREERDEINEEVQELK 75 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 98
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.81 E-value=2.7e-05 Score=78.40 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=56.5
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhh-cchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSH-ADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~-ad~l~gV 1053 (1070)
||| .||.+...+.|++||||++++||..++..|.++|.++...+.-+|+|||+...+.. ||.++-+
T Consensus 135 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 207 (211)
T cd03225 135 LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVL 207 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 888 17777788999999999999999999999999999986335789999999887765 8987654
No 99
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.80 E-value=3.2e-05 Score=78.85 Aligned_cols=66 Identities=20% Similarity=0.236 Sum_probs=58.2
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . +|...+.+.|++||||++++||..++..|.++|.++. .+..+|+|||....+..||.++-+.
T Consensus 151 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~ 222 (226)
T cd03248 151 LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWP-ERRTVLVIAHRLSTVERADQILVLD 222 (226)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHhCCEEEEec
Confidence 888 1 7777778889999999999999999999999999997 6789999999999999999876543
No 100
>COG4637 Predicted ATPase [General function prediction only]
Probab=97.78 E-value=0.00016 Score=71.97 Aligned_cols=80 Identities=19% Similarity=0.202 Sum_probs=65.1
Q ss_pred CCceeeccCCCCCCccch---hhh-h-------hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEe
Q psy16118 970 LPRPFLGPENPEEPLTYR---VST-T-------IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVIS 1038 (1070)
Q Consensus 970 ~~~~~l~~~~~~~~~~~r---LSG-t-------~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT 1038 (1070)
.|+..|...|+.-...|| ||. | -++++.+|.||.+|||....|=+.-...++.++.+.| +.+|+||+|
T Consensus 250 ~g~~~l~~~d~~~~~P~~~~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAa-k~sQv~VsT 328 (373)
T COG4637 250 DGRIELKWQDRGFLDPFRDRELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAA-KRSQVIVST 328 (373)
T ss_pred CceEEEEeccccccCchhhhhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhh-ccceEEEEe
Confidence 366667665553333454 998 6 5667788889999999999999999999999999999 999999999
Q ss_pred cCcchHhhcchh
Q psy16118 1039 LKEEFFSHADSL 1050 (1070)
Q Consensus 1039 ~~~~~~~~ad~l 1050 (1070)
|.+.+...-.-.
T Consensus 329 HS~rLl~~~e~~ 340 (373)
T COG4637 329 HSPRLLNAVEEH 340 (373)
T ss_pred CCHHHHhhcccc
Confidence 999988776543
No 101
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.77 E-value=4.3e-05 Score=73.05 Aligned_cols=64 Identities=17% Similarity=0.300 Sum_probs=55.6
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . +|...+.+.|+++|||++++||..++..+.++|.++. .-+|+|||+...+..||..+-+.
T Consensus 92 LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~---~tiiivsh~~~~~~~~d~i~~l~ 161 (166)
T cd03223 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG---ITVISVGHRPSLWKFHDRVLDLD 161 (166)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhC---CEEEEEeCChhHHhhCCEEEEEc
Confidence 888 1 7777778999999999999999999999999999873 57999999999999999876443
No 102
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.77 E-value=3e-05 Score=77.95 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=57.2
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| +||.+.+.+.|+++|||++++||..++..|.++|..+...+.-+|+|||+...+ ..||+++-+.
T Consensus 129 LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 202 (210)
T cd03269 129 LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLN 202 (210)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEe
Confidence 888 178777889999999999999999999999999999863457899999998866 5799876554
No 103
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.77 E-value=3.3e-05 Score=78.24 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=56.9
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHhhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
||| .+|.....+.|+++|||++++||..++..|.++|.++.. .+.-+|+|||+...+..||..+-+
T Consensus 141 LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l 213 (218)
T cd03255 141 LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIEL 213 (218)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEe
Confidence 888 177777888999999999999999999999999999962 257899999999888889976544
No 104
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.77 E-value=2.9e-05 Score=77.16 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=56.6
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchhe
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLV 1051 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~ 1051 (1070)
||| . +|...+.+.|++||||++++||..++..+.++|.++...+..+|+|||+......||.++
T Consensus 128 LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 128 LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 887 1 777778889999999999999999999999999998435678999999999999999864
No 105
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.77 E-value=3.7e-05 Score=77.66 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=56.1
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~gV 1053 (1070)
||| .+|.....+.|++||||++++||..++..+.++|.++...+.-+|+|||+...+. .||..+-+
T Consensus 138 LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l 210 (214)
T TIGR02673 138 LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIIL 210 (214)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEe
Confidence 888 1777777888999999999999999999999999998524678999999987765 68987654
No 106
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.76 E-value=4e-05 Score=77.83 Aligned_cols=66 Identities=15% Similarity=0.261 Sum_probs=57.8
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| - +|.....+.|++||||++++||..++..|.++|.+++ ...-+|+|||....+..||.++-+.
T Consensus 141 LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~~~~~~d~v~~l~ 212 (220)
T cd03245 141 LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLLDLVDRIIVMD 212 (220)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEEEEe
Confidence 888 1 7777778889999999999999999999999999997 5588999999999999999876543
No 107
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.75 E-value=3.8e-05 Score=77.47 Aligned_cols=66 Identities=12% Similarity=0.183 Sum_probs=56.0
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheee
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gV 1053 (1070)
||| . +|.....+.|+++|||++++||..++..|.++|.++...+.-+|+|||+...+ ..||..+.+
T Consensus 133 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 205 (213)
T cd03235 133 LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL 205 (213)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 888 1 77777789999999999999999999999999999853456799999998766 568987654
No 108
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.75 E-value=0.069 Score=54.57 Aligned_cols=30 Identities=7% Similarity=0.113 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy16118 54 AEEETNMSYLKKKGVVAERKEAKIEKDEAE 83 (1070)
Q Consensus 54 ~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~ 83 (1070)
....+.......++|..+++.++.+.+.+.
T Consensus 65 ~~~~lr~gVfqlddi~~qlr~~rtel~~a~ 94 (499)
T COG4372 65 LNRNLRSGVFQLDDIRPQLRALRTELGTAQ 94 (499)
T ss_pred hhhhHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777776666554
No 109
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.74 E-value=3.9e-05 Score=77.91 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=57.1
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . ||...+.+.|+++|||++++||..++..|.++|..+.. .+.-+|+|||+...+..+|..+.+.
T Consensus 142 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~ 215 (221)
T TIGR02211 142 LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMK 215 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEe
Confidence 888 2 77777788999999999999999999999999998852 2578999999999988888765543
No 110
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.74 E-value=3.7e-05 Score=77.51 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=56.8
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| - +|.....+.|+++|||++++||..++..+.++|.++.. .++-+|+|||+... ...||.++.+.
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~ 205 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMN 205 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEE
Confidence 888 1 77777889999999999999999999999999999852 26789999999875 56799877554
No 111
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.74 E-value=4.1e-05 Score=76.89 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=57.1
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|.....+.|+++|||++++||..++..|.++|.++...+.-+|+|||+...+ ..||..+.+.
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~ 200 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIIN 200 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEE
Confidence 888 1 77777888999999999999999999999999999862457899999998876 5799876654
No 112
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.73 E-value=3.7e-05 Score=78.86 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=58.3
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . ||.....+.|++||||++++||..++..|.++|..++. .+.-+|+|||+...+..||.++-+.
T Consensus 133 LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~ 206 (236)
T TIGR03864 133 LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLH 206 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEe
Confidence 888 1 77777889999999999999999999999999999862 3578999999999988899887554
No 113
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.73 E-value=3.8e-05 Score=78.12 Aligned_cols=68 Identities=28% Similarity=0.271 Sum_probs=57.9
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeecc
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGICP 1055 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt~ 1055 (1070)
||| - ||...+.+.++++|||++++||..++..+.++|..+...+.-+|+|||+...+ ..||.++.+|.
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~~ 224 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVTP 224 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecCC
Confidence 888 1 66666778899999999999999999999999999852467899999998877 48999888773
No 114
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.73 E-value=4.6e-05 Score=74.27 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=56.4
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . +|=..+...++++.||++++||..|...+.++|.++.. .++=+|||||.+.++..||+.|-+.
T Consensus 143 LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~ 216 (226)
T COG1136 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELK 216 (226)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEe
Confidence 999 2 44444567778889999999999999999999999963 3568999999999999999986554
No 115
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.72 E-value=4.8e-05 Score=76.87 Aligned_cols=66 Identities=14% Similarity=0.172 Sum_probs=55.9
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~gV 1053 (1070)
||| .+|...+.+.|+++|||++++||..++..+.++|.++...+.-+|+|||+...+. .||.++-+
T Consensus 139 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l 211 (216)
T TIGR00960 139 LSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTL 211 (216)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 888 1777777899999999999999999999999999998524578999999988765 68987644
No 116
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.71 E-value=5.4e-05 Score=74.65 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=57.0
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc--hHhhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE--FFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~--~~~~ad~l~gVt 1054 (1070)
||| . ||.+.+.+.|+++|||++++||..++..+.++|.++...+.-+|+|||+.. ....+|.++.+.
T Consensus 112 LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~ 186 (194)
T cd03213 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLS 186 (194)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEe
Confidence 788 1 777778899999999999999999999999999998634679999999985 567899876554
No 117
>KOG1029|consensus
Probab=97.71 E-value=0.15 Score=57.29 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=20.4
Q ss_pred CCceEEEEecCcchHhhcchheeeccCCccceeeecccc
Q psy16118 1030 DSLQTIVISLKEEFFSHADSLVGICPGSVTISSICFGHY 1068 (1070)
Q Consensus 1030 ~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~v~~~~~ 1068 (1070)
+.-|+|.|+-+.. +|-.-|= .+|+|-+++..|
T Consensus 1073 ~kgdiI~Vlnkde----peWW~Ge---~ng~sGLFPSNY 1104 (1118)
T KOG1029|consen 1073 KKGDIINVLNKDE----PEWWSGE---RNGKSGLFPSNY 1104 (1118)
T ss_pred cCCCEEEecCCCC----hhhhccc---ccCccccCcccc
Confidence 5779999997743 3444442 347777777666
No 118
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=5.6e-05 Score=71.92 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=50.2
Q ss_pred hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhc--chhe
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHA--DSLV 1051 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~a--d~l~ 1051 (1070)
+.+....|. |+||||+|++||-...+.+++-+..+...++=|++|||..++..+. |+.+
T Consensus 156 lQ~~~lePk-l~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 156 LQLLLLEPK-LAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHhcCCC-EEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 444444444 9999999999999999999999999976889999999999999988 6654
No 119
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.71 E-value=4.5e-05 Score=76.53 Aligned_cols=64 Identities=19% Similarity=0.329 Sum_probs=55.5
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchhe
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLV 1051 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~ 1051 (1070)
||| - +|...+.+.|+++|||++++||..++..|.++|+++...+.-+|+|||+...+..||..+
T Consensus 135 lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~ 204 (206)
T TIGR03608 135 LSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVI 204 (206)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEE
Confidence 888 1 777777888999999999999999999999999998634678999999999888888754
No 120
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.71 E-value=5.3e-05 Score=77.96 Aligned_cols=66 Identities=23% Similarity=0.219 Sum_probs=58.3
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . +|...+.++|+++|||++++||..++..|.++|..+. .+..+|+|||+...+..||.++-+.
T Consensus 140 LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~ 211 (238)
T cd03249 140 LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQ 211 (238)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEE
Confidence 888 1 7777778889999999999999999999999999997 7788999999999999999876554
No 121
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.71 E-value=5e-05 Score=76.45 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=57.3
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| ++|...+.++|+++|||++++||..++..+.++|..++ .+.-+|+|||+...+ ..||+++-+.
T Consensus 131 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~ 203 (211)
T cd03264 131 LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG-EDRIVILSTHIVEDVESLCNQVAVLN 203 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 888 17777788999999999999999999999999999997 668899999998876 5799876443
No 122
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.70 E-value=5.5e-05 Score=77.76 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=58.5
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| .||...+.+.++++|||++++||..++..|.++|..+. .+.-+|+|||+...+..||.++-+.
T Consensus 139 LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~d~v~~l~ 210 (237)
T cd03252 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVKNADRIIVME 210 (237)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEEEEE
Confidence 888 17777778889999999999999999999999999997 6788999999999999899876554
No 123
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.70 E-value=4.9e-05 Score=77.19 Aligned_cols=68 Identities=22% Similarity=0.381 Sum_probs=59.1
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHhhcchheeecc
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~l~gVt~ 1055 (1070)
||| . ||...+.+.|++||||++++||..++..|.++|.++.. .+.-+|+|||....+..||..+.+.+
T Consensus 138 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~ 212 (225)
T PRK10247 138 LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQP 212 (225)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEec
Confidence 888 1 77777889999999999999999999999999999852 25789999999999899998877754
No 124
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=5.1e-05 Score=83.02 Aligned_cols=66 Identities=23% Similarity=0.250 Sum_probs=59.2
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . +|=.-.+|+|+++|||++|+||..+-..+.+.|.+++ ++.=+|+||||...+..||..|-+-
T Consensus 457 LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~-~~ktvl~itHrl~~~~~~D~I~vld 528 (559)
T COG4988 457 LSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELA-KQKTVLVITHRLEDAADADRIVVLD 528 (559)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHH-hCCeEEEEEcChHHHhcCCEEEEec
Confidence 999 2 5545568999999999999999999999999999999 8899999999999999999986443
No 125
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.69 E-value=5.6e-05 Score=77.14 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=57.3
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeecc
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGICP 1055 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt~ 1055 (1070)
||| .+|...+.+.|+++|||++++||..++..+.++|.++. ...-+|+|||+...+ ..||.++-+..
T Consensus 142 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~ 215 (227)
T cd03260 142 LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELK-KEYTIVIVTHNMQQAARVADRTAFLLN 215 (227)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-hCcEEEEEeccHHHHHHhCCEEEEEeC
Confidence 888 17777778899999999999999999999999999997 558899999998764 57998776653
No 126
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.69 E-value=5.4e-05 Score=76.85 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=57.1
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . ||.....+.|+++|||++++||..+...+.++|..+. ...-+|+|||+...+ ..||.++-+.
T Consensus 134 LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~ 206 (220)
T cd03263 134 LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR-KGRSIILTTHSMDEAEALCDRIAIMS 206 (220)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhcCEEEEEE
Confidence 888 1 7777788999999999999999999999999999997 668899999999876 5699876543
No 127
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.68 E-value=5.8e-05 Score=74.95 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=57.8
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh--hcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS--HADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~--~ad~l~gVt 1054 (1070)
||| . +|...+.+.|+++|||++++||..++..|.++|.++...+.-+|+|||+...+. .||.++.+.
T Consensus 105 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~ 179 (200)
T cd03217 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLY 179 (200)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEE
Confidence 888 1 666667889999999999999999999999999998623678999999999888 799987665
No 128
>KOG1029|consensus
Probab=97.68 E-value=0.16 Score=56.97 Aligned_cols=8 Identities=0% Similarity=0.164 Sum_probs=3.8
Q ss_pred hCCeEecC
Q psy16118 565 TNNALVCE 572 (1070)
Q Consensus 565 ~~~~~~~~ 572 (1070)
-|++++|.
T Consensus 714 pGDII~V~ 721 (1118)
T KOG1029|consen 714 PGDIIIVF 721 (1118)
T ss_pred CCCEEEEe
Confidence 34555444
No 129
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.68 E-value=5e-05 Score=77.69 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=57.4
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| - ||...+.+.|+++|||++++||..++..|.++|.+++.. +.-+|+|||....+. .||.+|-+.
T Consensus 146 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 220 (228)
T cd03257 146 LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMY 220 (228)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEe
Confidence 888 1 777777899999999999999999999999999998622 678999999998876 799887554
No 130
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.68 E-value=7.7e-05 Score=75.44 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=55.0
Q ss_pred hhh------hhhhccccCC--CeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPA--PFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~--Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| ++|.+.+.+. +++||||++++||..++..+.++|..+...+.-+|+|||....+..||.++-+.
T Consensus 138 LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~ 212 (226)
T cd03270 138 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIG 212 (226)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeC
Confidence 888 1555555443 599999999999999999999999998534567999999999999999986553
No 131
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.67 E-value=6.4e-05 Score=75.90 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=56.5
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|...+.+.|++||||++++||..++..|.++|.++...+.-+|+|||+...+ ..||..+-+.
T Consensus 136 LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~ 209 (213)
T cd03262 136 LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMD 209 (213)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 888 1 77777788899999999999999999999999999862357899999998876 5799876553
No 132
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=6.2e-05 Score=77.99 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=58.1
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeecc
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGICP 1055 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt~ 1055 (1070)
||| . +|...+.+.++++|||++++||..++..|.++|.++. .+..+|+|||+...+ ..||.++-+..
T Consensus 147 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~~l~~ 220 (250)
T PRK14245 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDKTAFFYM 220 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEEC
Confidence 888 1 7777778899999999999999999999999999997 678999999998865 77998776643
No 133
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.67 E-value=5.1e-05 Score=76.94 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=56.3
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcc-hHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEE-FFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~-~~~~ad~l~gVt 1054 (1070)
||| .+|.+.+.+.|++||||++++||..++..|.++|.++.. .+.-+|+|||+.. +...||.++-+.
T Consensus 132 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (220)
T cd03293 132 LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLS 206 (220)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 888 177777888999999999999999999999999998842 3578999999988 457899876543
No 134
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.66 E-value=6.3e-05 Score=75.25 Aligned_cols=67 Identities=22% Similarity=0.330 Sum_probs=56.4
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| .+|.+.+.+.|+++|||++++||..++..+.++|.++...+.-+|+|||+...+. .||.++.+.
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 200 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLA 200 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1776677788999999999999999999999999998525578999999988765 799876554
No 135
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=5.8e-05 Score=77.57 Aligned_cols=67 Identities=15% Similarity=0.127 Sum_probs=57.3
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc-hHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE-FFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~-~~~~ad~l~gVt 1054 (1070)
||| .+|.+.+.+.|+++|||++++||..++..+.++|.++...+.-+|+|||+.. +...||+++-+.
T Consensus 138 LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 211 (237)
T PRK11614 138 MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLE 211 (237)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEe
Confidence 777 1777777889999999999999999999999999998634678999999976 788999887554
No 136
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.66 E-value=6.9e-05 Score=76.12 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=58.0
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| .||...+.+.|+++|||++++||..++..+.++|.++. ....+|+|||+......||.++-+.
T Consensus 140 LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~ 211 (221)
T cd03244 140 LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF-KDCTVLTIAHRLDTIIDSDRILVLD 211 (221)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEE
Confidence 888 17777778889999999999999999999999999987 6789999999999888898876554
No 137
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.66 E-value=6.3e-05 Score=76.45 Aligned_cols=67 Identities=21% Similarity=0.184 Sum_probs=57.5
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . ||...+.+.|+++|||++++||..++..|.++|.++...+..+|+|||++..+ ..||.++-+.
T Consensus 125 LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 198 (223)
T TIGR03740 125 FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIIS 198 (223)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEe
Confidence 888 1 77777888999999999999999999999999999862457899999999876 6799887654
No 138
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.66 E-value=7.4e-05 Score=72.93 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=55.4
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheee
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gV 1053 (1070)
||| . +|...+.+.|+++|||++++||..++..+.++|..+...+..+|++||+...+ ..||..+-+
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l 177 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVM 177 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEe
Confidence 888 1 77777788999999999999999999999999999852468999999997655 558987654
No 139
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=7.5e-05 Score=76.36 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=58.6
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . +|...+.+.|+++|||++++||..++..+.++|..+. .+..+|+|||....+..||.++-+.
T Consensus 140 LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~ 211 (229)
T cd03254 140 LSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKNADKILVLD 211 (229)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEEe
Confidence 888 1 6666678889999999999999999999999999997 7889999999999999999876554
No 140
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.65 E-value=8e-05 Score=72.43 Aligned_cols=66 Identities=21% Similarity=0.197 Sum_probs=57.8
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||...+..+.++|..+. .+.-+|+|||....+..||+.+-+.
T Consensus 99 LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~~~~l~ 170 (178)
T cd03247 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIEHMDKILFLE 170 (178)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEE
Confidence 888 17777778889999999999999999999999999997 6788999999999999999875443
No 141
>KOG0994|consensus
Probab=97.65 E-value=0.24 Score=58.23 Aligned_cols=13 Identities=0% Similarity=0.210 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHhh
Q psy16118 887 AKSIQEMTSRLQT 899 (1070)
Q Consensus 887 ~~~l~~l~~~l~~ 899 (1070)
+.+.+.|+.+-.+
T Consensus 1688 r~rAe~L~~eA~~ 1700 (1758)
T KOG0994|consen 1688 RERAEQLRTEAEK 1700 (1758)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 142
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=7.7e-05 Score=76.59 Aligned_cols=66 Identities=24% Similarity=0.288 Sum_probs=58.7
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| .+|.+.+.+.++++|||++++||..++..|.++|..+. ++..+|+|||....+..||.++-+.
T Consensus 139 LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~v~~l~ 210 (234)
T cd03251 139 LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIENADRIVVLE 210 (234)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEec
Confidence 888 17777788899999999999999999999999999997 7889999999999999999876554
No 143
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.65 E-value=6.8e-05 Score=75.93 Aligned_cols=67 Identities=13% Similarity=0.073 Sum_probs=56.9
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|.+.+.+.|++||||++++||..++..|.++|..+...+..+|+|||+...+ ..||.++.+.
T Consensus 143 LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 216 (224)
T cd03220 143 YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLE 216 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1 77777889999999999999999999999999999863457899999998765 5799876554
No 144
>PRK10908 cell division protein FtsE; Provisional
Probab=97.65 E-value=7.4e-05 Score=75.85 Aligned_cols=67 Identities=10% Similarity=0.135 Sum_probs=56.3
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| . +|...+.+.|+++|||++++||..++..|.++|..+...+.-+|+|||+...+. .||.++-+.
T Consensus 138 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 211 (222)
T PRK10908 138 LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLS 211 (222)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1 777777788999999999999999999999999998524578999999988765 588876554
No 145
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.64 E-value=7.3e-05 Score=75.53 Aligned_cols=66 Identities=12% Similarity=0.223 Sum_probs=56.0
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~gV 1053 (1070)
||| ++|...+.+.++++|||++++||..++..|.++|.++...+.-+|+|||+...+. .||.++-+
T Consensus 137 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 137 LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 888 1777777899999999999999999999999999998524578999999988775 68987654
No 146
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.64 E-value=6.3e-05 Score=76.61 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=57.0
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheeecc
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gVt~ 1055 (1070)
||| .+|.+.+.+.|++||||++++||..++..+.++|.++.. .+.-+|+|||.... ...||..+-+..
T Consensus 115 LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~ 190 (230)
T TIGR01184 115 LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTN 190 (230)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeC
Confidence 888 177777888999999999999999999999999999852 25689999999875 567998765543
No 147
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.64 E-value=0.076 Score=62.21 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy16118 398 SLKDNKKLKEELNSDVGSSKNRVQELQKELEQVI 431 (1070)
Q Consensus 398 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 431 (1070)
.|.+...+++.....+..-..++.+|...+..+.
T Consensus 623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555555554443
No 148
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.64 E-value=6.9e-05 Score=77.51 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=56.9
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhh--cchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSH--ADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~--ad~l~gVt 1054 (1070)
||| .||.....+.|+++|||++++||..++..|.++|.++...+.-+|+|||+...+.. ||.++-+.
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~ 219 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLL 219 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEe
Confidence 788 17777788999999999999999999999999999986245789999999988865 78876443
No 149
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.63 E-value=0.22 Score=57.23 Aligned_cols=29 Identities=7% Similarity=0.056 Sum_probs=16.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 200 QANEAHNKDIADLETQLADVRKRKAEYER 228 (1070)
Q Consensus 200 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 228 (1070)
..+..++.-+......+..|..+|..+..
T Consensus 394 ~ni~kL~~~v~~s~~rl~~L~~qWe~~R~ 422 (594)
T PF05667_consen 394 ENIAKLQALVEASEQRLVELAQQWEKHRA 422 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555666666666665554
No 150
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=7.7e-05 Score=77.04 Aligned_cols=67 Identities=19% Similarity=0.163 Sum_probs=58.2
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeecc
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGICP 1055 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt~ 1055 (1070)
||| . +|...+.+.|+++|||++++||..++..|.++|.++. .+.-+|+|||+...+ ..||.++.+..
T Consensus 143 LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~ 216 (246)
T PRK14269 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-HNLSMIMVTHNMQQGKRVADYTAFFHL 216 (246)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhCcEEEEEEC
Confidence 888 1 7777788999999999999999999999999999997 688999999998854 68998876653
No 151
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.63 E-value=7.2e-05 Score=75.76 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=56.6
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc-hHhhcchheee
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE-FFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~-~~~~ad~l~gV 1053 (1070)
||| . +|.+...+.|++||||++++||..++..|.++|.++...+.-+|+|||+.. +...||.++-+
T Consensus 114 LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l 186 (223)
T TIGR03771 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL 186 (223)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 888 1 777778899999999999999999999999999998634679999999988 45679988743
No 152
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.62 E-value=9.1e-05 Score=74.23 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=58.2
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeecc
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~ 1055 (1070)
||| . ||...+.+.|+++|||++++||...+..|.++|..+. .+.-+|+|||.......+|.++-+..
T Consensus 126 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~~d~v~~l~~ 198 (207)
T cd03369 126 LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIIDYDKILVMDA 198 (207)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEEC
Confidence 888 1 6666677889999999999999999999999999986 68899999999998888998876653
No 153
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.62 E-value=7e-05 Score=76.46 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=56.7
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchHhhcchheee
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
||| - +|...+.+.++++|||++++||..++..|.++|.++... +.-+|+|||....+..||.++-+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l 219 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRL 219 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE
Confidence 888 1 777777899999999999999999999999999998522 57899999999999999977544
No 154
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.62 E-value=7.7e-05 Score=77.66 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=57.5
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| . ||...+.+.|+++|||++++||..++..+.++|.++. .+..+|+|||+... ...||.++.+.
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~~~~~~~d~i~~l~ 221 (258)
T PRK14241 149 LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQQAARVSDQTAFFN 221 (258)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 888 1 7777778889999999999999999999999999997 66899999999876 46899987664
No 155
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.61 E-value=7.5e-05 Score=75.96 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=56.8
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| .+|.....++|+++|||++++||..++..|.++|.++...+.-+|+|||.... ...||.++-+.
T Consensus 133 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (222)
T cd03224 133 LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLE 206 (222)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEee
Confidence 787 17777778899999999999999999999999999986346799999999886 57799876554
No 156
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.61 E-value=7.8e-05 Score=77.60 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=57.4
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| . +|...+.+.|++||||++++||..++..+.++|.++...+..+|+|||+...+. .||+++-+.
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~ 226 (257)
T PRK10619 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH 226 (257)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 888 1 777777888999999999999999999999999998634689999999998876 589876554
No 157
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.61 E-value=8.3e-05 Score=76.22 Aligned_cols=67 Identities=19% Similarity=0.196 Sum_probs=57.1
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCc-chHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKE-EFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~-~~~~~ad~l~gVt 1054 (1070)
||| +||.+...+.|+++|||++++||..++..|.++|+.++..+.-+|+|||.. .+...||.++-+.
T Consensus 134 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 207 (232)
T cd03218 134 LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIY 207 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 178778889999999999999999999999999999863456799999998 5777899876554
No 158
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.60 E-value=0.00013 Score=69.68 Aligned_cols=75 Identities=20% Similarity=0.229 Sum_probs=59.5
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCC-ceEEEEecCcchHh-hcchheeeccCCcc
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDS-LQTIVISLKEEFFS-HADSLVGICPGSVT 1059 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~-~Q~i~iT~~~~~~~-~ad~l~gVt~~~~g 1059 (1070)
||| . +|.....+.|+++|||++++||..++..+.++|..+.... .-+|+|||...... .||..+-+. .++|
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~-~~~~ 150 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE-GEPG 150 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEc-CCCc
Confidence 888 2 6666667889999999999999999999999999885232 68999999988766 799887555 4466
Q ss_pred ceee
Q psy16118 1060 ISSI 1063 (1070)
Q Consensus 1060 vs~v 1063 (1070)
+=-|
T Consensus 151 ~~~~ 154 (177)
T cd03222 151 VYGI 154 (177)
T ss_pred ccee
Confidence 5333
No 159
>PF13166 AAA_13: AAA domain
Probab=97.60 E-value=0.36 Score=58.99 Aligned_cols=27 Identities=33% Similarity=0.651 Sum_probs=21.0
Q ss_pred ccccccC-cccccCCCCeEEEEcCCCCc
Q psy16118 12 NFKSYKG-KFSIGPLKKFTAVIGPNGSG 38 (1070)
Q Consensus 12 ~F~~y~~-~~~i~df~~l~lI~G~nGaG 38 (1070)
|||+|.+ ...+++|..+++|+|.||||
T Consensus 1 n~~~~~~~~~~~~~~~~~n~IYG~NGsG 28 (712)
T PF13166_consen 1 NYASFDNWDNELDEFKKINLIYGRNGSG 28 (712)
T ss_pred CeeeecCCCccCCCCCceEEEECCCCCC
Confidence 7899952 22444678899999999999
No 160
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.60 E-value=9.9e-05 Score=75.89 Aligned_cols=66 Identities=23% Similarity=0.309 Sum_probs=58.4
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| - +|...+.+.++++|||++++||..++..+.++|..+. .+.-+|+|||+......||.++-+.
T Consensus 138 LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~d~~~~l~ 209 (236)
T cd03253 138 LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-KGRTTIVIAHRLSTIVNADKIIVLK 209 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHhCCEEEEEE
Confidence 888 1 7777788889999999999999999999999999997 5778999999999999999876554
No 161
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=8.8e-05 Score=76.92 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=57.4
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|..-..+.|+++|||++++||..++..+.++|.++. .+.-+|+|||+...+ ..||.++-+.
T Consensus 147 LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~ 219 (250)
T PRK14247 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-KDMTIVLVTHFPQQAARISDYVAFLY 219 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 888 1 6666678889999999999999999999999999997 678999999998876 6799876554
No 162
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.59 E-value=9.2e-05 Score=76.95 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=57.8
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeecc
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGICP 1055 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt~ 1055 (1070)
||| . +|...+.+.|+++|||++++||..++..|.++|.++. .+.-+|+|||+...+ ..||.++-+..
T Consensus 150 LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~~~~~~~d~v~~l~~ 223 (253)
T PRK14242 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQQAARVSDVTAFFYM 223 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHHHHHHhCCEEEEEEC
Confidence 888 1 7777778889999999999999999999999999996 678999999998766 67998876543
No 163
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.59 E-value=9e-05 Score=75.10 Aligned_cols=67 Identities=19% Similarity=0.155 Sum_probs=56.8
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..|.++|..+...+.-+|+|||+... ...||.++-+.
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~ 210 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLH 210 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 888 17777778899999999999999999999999999985246789999999875 46799877554
No 164
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.58 E-value=0.26 Score=56.87 Aligned_cols=17 Identities=12% Similarity=0.176 Sum_probs=7.7
Q ss_pred cCChhhHHHHHHHHHHh
Q psy16118 1011 ALDNTNIGKVASYIVTK 1027 (1070)
Q Consensus 1011 ~lD~~n~~~~~~~l~~~ 1027 (1070)
+-|+..+..++.+|.++
T Consensus 569 p~dnpTAqqImqLL~ei 585 (617)
T PF15070_consen 569 PHDNPTAQQIMQLLQEI 585 (617)
T ss_pred CCCCchHHHHHHHhHhc
Confidence 33444444444444444
No 165
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.58 E-value=0.0001 Score=76.48 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=57.8
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc-hHhhcchheeecc
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE-FFSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~-~~~~ad~l~gVt~ 1055 (1070)
||| . +|...+.++|+++|||++++||..++..|.++|..++ .+..+|+|||+.. +...||.++-+..
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tili~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS-ENYTIVIVTHNIGQAIRIADYIAFMYR 220 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 888 1 7777778889999999999999999999999999997 6789999999988 4678998876543
No 166
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.58 E-value=0.0001 Score=76.77 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=56.9
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|...+.+.|+++|||++++||..++..+.++|+++. .+..+|+|||+...+ ..||+++-+.
T Consensus 155 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~~tiiivsH~~~~~~~~~d~i~~l~ 227 (258)
T PRK14268 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-KDYTIVIVTHNMQQAARISDYTGFFL 227 (258)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-hCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 888 1 6666677889999999999999999999999999997 678999999998765 6799876553
No 167
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=9.4e-05 Score=75.89 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=56.8
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..|.++|.++.. .+.-+|+|||+...+ ..||.++-+.
T Consensus 137 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~ 211 (235)
T cd03261 137 LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLY 211 (235)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEE
Confidence 888 177777889999999999999999999999999999862 257899999998765 5699876554
No 168
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=9.1e-05 Score=76.51 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=56.8
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| - +|...+.+.|++||||++++||..++..+.++|..+.. .+.-+|+|||+...+. .||.++-+.
T Consensus 145 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~ 219 (241)
T cd03256 145 LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLK 219 (241)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1 77777788899999999999999999999999999852 2578999999988776 899876554
No 169
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=9.5e-05 Score=74.40 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=56.3
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| - +|...+.+.|+++|||++++||..++..+.++|.++.. .+.-+|+|||+.... ..||.++-+.
T Consensus 129 LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 203 (211)
T cd03298 129 LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLD 203 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEE
Confidence 788 1 77777788899999999999999999999999999852 257899999998866 6699876554
No 170
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=8.9e-05 Score=76.71 Aligned_cols=67 Identities=22% Similarity=0.162 Sum_probs=56.5
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| - ||.....+.|++||||++++||..++..+.++|.++.. .+.-+|+|||+...+ ..||.++-+.
T Consensus 129 LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~ 203 (255)
T PRK11248 129 LSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLS 203 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 888 1 77777888999999999999999999999999999841 367899999998765 6789876554
No 171
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.56 E-value=0.0001 Score=76.19 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=57.0
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| .+|.+.+.+.++++|||++++||..++..|.++|..+. ...-+|+|||+... ...||.++-+.
T Consensus 145 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~ 217 (247)
T TIGR00972 145 LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELK-KKYTIVIVTHNMQQAARISDRTAFFY 217 (247)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hcCeEEEEecCHHHHHHhCCEEEEEE
Confidence 888 17777788889999999999999999999999999997 56789999999985 46799876544
No 172
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.56 E-value=7.9e-05 Score=88.21 Aligned_cols=66 Identities=27% Similarity=0.316 Sum_probs=58.6
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| - +|-.-++++|+++|||++++||..+...+.+.|..+. ++.=+|+|||++.++..||..+-+.
T Consensus 470 LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~~~~~~D~ii~l~ 541 (571)
T TIGR02203 470 LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLSTIEKADRIVVMD 541 (571)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhHHHHhCCEEEEEe
Confidence 999 1 5544568899999999999999999999999999997 8899999999999999999987553
No 173
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.56 E-value=0.0001 Score=74.21 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=56.2
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|.+.+.+.|+++|||++++||..++..|.++|.++.. .++.+|+|||+.... ..||..+-+.
T Consensus 129 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~ 203 (213)
T TIGR01277 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVS 203 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEE
Confidence 777 1 77667788899999999999999999999999999852 268999999998864 6799876554
No 174
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.56 E-value=0.00011 Score=76.89 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=57.2
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc-hHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE-FFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~-~~~~ad~l~gVt 1054 (1070)
||| .||.+.+.+.|+++|||++++||..++..+.++|.++. .+.-+|+|||+.. +...||.++-+.
T Consensus 155 LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~ 227 (269)
T PRK14259 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQQAVRVSDMTAFFN 227 (269)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEe
Confidence 888 17777788999999999999999999999999999997 6678999999976 557899876554
No 175
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.56 E-value=9.3e-05 Score=87.69 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=59.1
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| ++|=.-++++|++||||++++||..+...+.+.|.++. ++.-+|+|||+..++..||..|-+.
T Consensus 486 LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~i~~aD~Iivl~ 557 (588)
T PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLEDLAQWDQIWVMQ 557 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHHHHhCCEEEEEe
Confidence 999 25555568999999999999999999999999999997 7889999999999999999988664
No 176
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.56 E-value=0.083 Score=61.90 Aligned_cols=100 Identities=19% Similarity=0.291 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 335 RAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVG 414 (1070)
Q Consensus 335 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~ 414 (1070)
+..+++.++..++.++...+..+..++.+...+.....+-..+.+.+-..+..++++-..++.-|..-..-.-+|=..+.
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg 625 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALG 625 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554433332211122233444444444444444444444333333333444444
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy16118 415 SSKNRVQELQKELEQVIEEL 434 (1070)
Q Consensus 415 ~~~~~~~~l~~~~~~~~~~l 434 (1070)
..+++++-+...+..-..++
T Consensus 626 ~akrq~ei~~~~~~~~d~ei 645 (697)
T PF09726_consen 626 DAKRQLEIAQGQLRKKDKEI 645 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333
No 177
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.56 E-value=8.9e-05 Score=75.99 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=56.9
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . ||.....+.|++||||++++||..++..|.++|.++... ++-+|+|||+...+ ..||.++-+.
T Consensus 141 LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 141 LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1 777778899999999999999999999999999998522 67899999999876 5699876553
No 178
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.56 E-value=0.0001 Score=87.20 Aligned_cols=66 Identities=23% Similarity=0.269 Sum_probs=58.7
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| - +|=.-++++|++||||++++||..+...+.+.|..+. ++.-+|+|||++.++..||..|-+.
T Consensus 472 LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~~~~~D~ii~l~ 543 (588)
T PRK13657 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLSTVRNADRILVFD 543 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHHHHhCCEEEEEE
Confidence 898 2 5544568999999999999999999999999999987 7899999999999999999987664
No 179
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.56 E-value=0.00011 Score=76.48 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=57.0
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheee
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGI 1053 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gV 1053 (1070)
||| . +|...+.+.|++||||++++||..++..+.++|..+. .+.-+|+|||+...+ ..||+++-+
T Consensus 151 LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l 222 (254)
T PRK14273 151 LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTAFF 222 (254)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 888 1 7777788889999999999999999999999999997 678899999999875 679987644
No 180
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=9.7e-05 Score=74.50 Aligned_cols=67 Identities=16% Similarity=0.122 Sum_probs=56.3
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .+|.+.+.+.|+++|||++++||..++..+.++|.+++.. +.-+|+|||....+ ..||..+-+.
T Consensus 132 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (214)
T cd03297 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVME 206 (214)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEE
Confidence 888 1777778889999999999999999999999999998622 56899999998866 5789875443
No 181
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.55 E-value=0.0001 Score=75.85 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=56.8
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . ||...+.+.|+++|||++++||..++..+.++|..+...+.-+|+|||+...+ ..||.++-+.
T Consensus 137 LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 210 (240)
T PRK09493 137 LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFID 210 (240)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1 77777788899999999999999999999999999863467899999998877 5689876554
No 182
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.55 E-value=0.00011 Score=75.18 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=57.0
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . ||.....++|+++|||++++||..++..+.++|.++.. .+.-+|+|||+...+ ..||.++.+.
T Consensus 154 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 154 LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 888 1 77777788899999999999999999999999999852 257899999999864 6799887664
No 183
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.55 E-value=0.0001 Score=76.24 Aligned_cols=67 Identities=22% Similarity=0.289 Sum_probs=56.9
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|...+.+.|+++|||++++||..++..+.++|.++.. .+.-+|+|||+...+ ..||.++-+.
T Consensus 146 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~ 220 (243)
T TIGR02315 146 LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLK 220 (243)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEE
Confidence 888 1 77777888999999999999999999999999999852 257899999998876 6799877654
No 184
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=0.00011 Score=75.19 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=54.9
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHhhcchhe
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFSHADSLV 1051 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~l~ 1051 (1070)
||| .||.....+.|+++|||++++||..++..+.++|.++.. .+.-+|+|||....+..+|..+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~ 216 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQL 216 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEE
Confidence 888 177777778899999999999999999999999999852 3678999999999888888543
No 185
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.55 E-value=0.00011 Score=75.51 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=56.8
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|.....+.|+++|||++++||..++..+.++|.++...+.-+|+|||+...+ ..||.++-+.
T Consensus 144 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~ 217 (236)
T cd03219 144 LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLD 217 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 888 1 77777788999999999999999999999999999853456799999998886 5699876554
No 186
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.54 E-value=0.00015 Score=67.34 Aligned_cols=63 Identities=17% Similarity=0.234 Sum_probs=53.0
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheee
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gV 1053 (1070)
||| . +|...+.+.|+++|||++++||..++..+.++|+.+. ..+|+|||..... ..+|..|-+
T Consensus 71 lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~---~til~~th~~~~~~~~~d~v~~l 140 (144)
T cd03221 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSHDRYFLDQVATKIIEL 140 (144)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC---CEEEEEECCHHHHHHhCCEEEEE
Confidence 788 2 6666678889999999999999999999999999873 4799999998766 568887644
No 187
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.54 E-value=0.24 Score=55.37 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=38.5
Q ss_pred eEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcc
Q psy16118 1002 FFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHAD 1048 (1070)
Q Consensus 1002 f~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad 1048 (1070)
|+||||.+.--|++-.++.+..+.++ +.|.++|||.+.+--.-+
T Consensus 1024 tVIlDEAF~R~s~~~a~~~i~~f~~f---glh~v~iTPlk~I~~l~~ 1067 (1104)
T COG4913 1024 TVILDEAFSRSSHVVAGRIIAAFREF---GLHAVFITPLKEIRLLRH 1067 (1104)
T ss_pred eEeechhhccCCHHHHHHHHHHHHHc---CceEEEechHHHHHHHHh
Confidence 68999999999999999999999988 489999999987655444
No 188
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.039 Score=61.39 Aligned_cols=32 Identities=25% Similarity=0.502 Sum_probs=27.2
Q ss_pred cccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 5 LQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 5 ~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
+..|+|.||.=+... .| +|.+ +++|+|.||||
T Consensus 2 L~~LsIknfaiIe~L-~l-eF~~GltVlTGETGAG 34 (557)
T COG0497 2 LLELSIKNFAIIEEL-EL-EFEKGLTVLTGETGAG 34 (557)
T ss_pred CcEEeeeheeeeeee-ee-eccCCceEEecCCCCc
Confidence 467999999999654 55 7976 99999999999
No 189
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.54 E-value=0.00011 Score=76.74 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=57.0
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| - +|...+.+.|++||||++++||..++..|.++|..++ .+.-+|+|||+...+ ..||.++-+.
T Consensus 164 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~-~~~tiiivtH~~~~~~~~~d~v~~l~ 236 (267)
T PRK14235 164 LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR-QNYTIVIVTHSMQQAARVSQRTAFFH 236 (267)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh-cCCeEEEEEcCHHHHHhhCCEEEEEE
Confidence 888 1 7777788899999999999999999999999999997 667899999998876 6788876554
No 190
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=9.5e-05 Score=76.21 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=56.8
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| . ||...+.+.|+++|||++++||..++..|.++|..+.. .+.-+|+|||+... ...||.++-+.
T Consensus 136 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 136 LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMK 210 (242)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 888 2 77777889999999999999999999999999999852 25789999999985 56799876543
No 191
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.54 E-value=0.00011 Score=76.51 Aligned_cols=66 Identities=17% Similarity=0.190 Sum_probs=57.1
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|...+.+.|+++|||++++||..++..|.++|.++. .+.-+|+|||+...+ ..||.++-+.
T Consensus 157 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~ 229 (260)
T PRK10744 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTAFMY 229 (260)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1 7777778899999999999999999999999999996 667899999999876 5799876554
No 192
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.54 E-value=0.0001 Score=75.13 Aligned_cols=67 Identities=21% Similarity=0.196 Sum_probs=56.7
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . ||.+.+.+.|+++|||++++||..++..|.++|.++.. .+.-+|+|||+...+ ..||.++-+.
T Consensus 126 LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 200 (230)
T TIGR02770 126 LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMD 200 (230)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1 77777888899999999999999999999999999862 257899999998877 4799876554
No 193
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.53 E-value=0.00012 Score=76.05 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=55.8
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhh--cchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSH--ADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~--ad~l~gV 1053 (1070)
||| ++|...+.+.|+++|||++++||...+..|.++|+.+...+.-+|+|||+...... +|.++-+
T Consensus 146 LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l 219 (248)
T PRK09580 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVL 219 (248)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEE
Confidence 888 17777778899999999999999999999999999986235789999999888876 7876543
No 194
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.53 E-value=0.00012 Score=75.92 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=57.8
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeecc
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGICP 1055 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt~ 1055 (1070)
||| . ||...+.+.|+++|||++++||..++..|.++|..++ ....+|+|||+.... ..||.++-+..
T Consensus 150 LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~-~~~tvii~sh~~~~~~~~~d~v~~l~~ 223 (253)
T PRK14261 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK-KEYTVIIVTHNMQQAARVSDYTGFMYL 223 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-hCceEEEEEcCHHHHHhhCCEEEEEEC
Confidence 888 1 7777778889999999999999999999999999997 678999999998765 67998875543
No 195
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.53 E-value=0.00012 Score=75.93 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=57.0
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|.+.+.+.|++||||++++||..++..+.++|..+...+.-+|+|||+...+ ..||.++-+.
T Consensus 145 LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~ 218 (250)
T PRK11264 145 LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD 218 (250)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 888 1 77777888999999999999999999999999999863467899999998776 5699876554
No 196
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.53 E-value=4.8e-05 Score=78.68 Aligned_cols=36 Identities=39% Similarity=0.593 Sum_probs=32.8
Q ss_pred CccccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
|+|.+|.|.||++|.+.+++++|.+ +++|+||||||
T Consensus 1 m~i~~~~~~~f~~~~~~~~~~~~~~~~~~IvG~NGsG 37 (251)
T cd03273 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSG 37 (251)
T ss_pred CEeeEEEEeCccccCcCEeeccCCCCeEEEECCCCCC
Confidence 7999999999999998877657876 99999999999
No 197
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.53 E-value=0.00013 Score=74.36 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=57.5
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCc--chHhhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKE--EFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~--~~~~~ad~l~gVt 1054 (1070)
||| . +|...+.+.+++||||++++||..+...|.++|.++...+.-+|+|||+. .+...||..+-+.
T Consensus 144 LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~ 218 (226)
T cd03234 144 ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLS 218 (226)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEe
Confidence 888 1 77777788999999999999999999999999999862457999999996 6889999876554
No 198
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.53 E-value=0.00012 Score=76.28 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=57.1
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| . +|...+.+.|+++|||++++||..++..+.++|.++. .+..+|+|||+... ...||.++-+.
T Consensus 156 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~ 228 (259)
T PRK14274 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-EKYTIVIVTHNMQQAARVSDQTAFFY 228 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhCCEEEEEE
Confidence 888 1 6766777889999999999999999999999999997 67899999999876 46799876554
No 199
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.53 E-value=0.00012 Score=74.81 Aligned_cols=67 Identities=19% Similarity=0.167 Sum_probs=56.4
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|.....+.|++||||++++||...+..+.++|.++.. .+..+|+|||+...+ ..||..+-+.
T Consensus 130 LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 204 (232)
T PRK10771 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVA 204 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 888 1 77777788999999999999999999999999999852 257899999999865 6799876554
No 200
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.53 E-value=0.00012 Score=75.88 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=57.3
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheeecc
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gVt~ 1055 (1070)
||| - +|...+.+.|+++|||++++||..++..|.++|.++. ....+|+|||+... ...||+++-+..
T Consensus 148 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~-~~~tiiivsH~~~~~~~~~d~v~~l~~ 221 (251)
T PRK14270 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK-KEYTIVIVTHNMQQASRVSDYTAFFLM 221 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCeEEEEEcCHHHHHHhcCEEEEEEC
Confidence 888 1 6666677889999999999999999999999999997 67899999999876 567998876643
No 201
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=0.00011 Score=75.67 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=56.0
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| . +|...+.++|+++|||++++||..++..+.++|.++... +.-+|+|||+... ...||.++-+.
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~ 211 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMN 211 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1 677677888999999999999999999999999998622 5689999999875 56799877654
No 202
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.52 E-value=0.00012 Score=76.16 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=56.8
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| . +|.....+.|++||||++++||..++..+.++|.++. .+..+|+|||+... ...||+++-+.
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~ 221 (252)
T PRK14239 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK-DDYTMLLVTRSMQQASRISDRTGFFL 221 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh-hCCeEEEEECCHHHHHHhCCEEEEEE
Confidence 888 1 7777778889999999999999999999999999996 66889999999865 57899886554
No 203
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=0.00012 Score=74.25 Aligned_cols=67 Identities=21% Similarity=0.187 Sum_probs=56.4
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| +||...+.++|+++|||++++||..++..+.++|.++... +.-+|+|||+...+ ..||+++-+.
T Consensus 132 LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~ 206 (220)
T cd03265 132 YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIID 206 (220)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 888 1787778899999999999999999999999999998632 56899999998765 5699876543
No 204
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=0.00013 Score=76.62 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=57.6
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeecc
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGICP 1055 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt~ 1055 (1070)
||| .+|.....+.|+++|||++++||..++..+.++|.++...+.-+|+|||....+ ..||.++-+..
T Consensus 137 LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~ 211 (271)
T PRK13638 137 LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQ 211 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 888 177777889999999999999999999999999999852356799999998876 67998876543
No 205
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.52 E-value=0.00012 Score=73.41 Aligned_cols=63 Identities=19% Similarity=0.073 Sum_probs=51.0
Q ss_pred CCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCcccee
Q psy16118 999 PAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTISS 1062 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~ 1062 (1070)
+.+++||||++++||...+..+.++|..+.....=+|+|||.......++..+-| +..+|||+
T Consensus 151 ~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~-~~~~~~~~ 213 (213)
T cd03279 151 RLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEV-IKTPGGSR 213 (213)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEE-EecCCCCC
Confidence 3459999999999999999999999999962367899999999877666555444 45678884
No 206
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.52 E-value=0.00011 Score=67.16 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=57.6
Q ss_pred hhhc--cccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcc-hheeeccCCccceee
Q psy16118 992 IVSH--RYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHAD-SLVGICPGSVTISSI 1063 (1070)
Q Consensus 992 ~al~--~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad-~l~gVt~~~~gvs~v 1063 (1070)
|+++ ++...-||||||..|+|....---+..+|..++..++||||.||.|-+|.+-. .+|-++- .|+..+
T Consensus 137 ~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~--~g~~~~ 209 (233)
T COG3910 137 LAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISE--SGIEER 209 (233)
T ss_pred HHHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEec--CCcccc
Confidence 7777 45777899999999999999999999999999877799999999999998865 3555553 455544
No 207
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.52 E-value=0.00013 Score=75.79 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=57.5
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|.+.+.+.|+++|||++++||..++..+.++|.++...+.-+|+|||+.... ..||+++.+.
T Consensus 138 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 211 (256)
T TIGR03873 138 LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLD 211 (256)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 888 1 77777888899999999999999999999999999862357899999998887 6899876654
No 208
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.52 E-value=0.00012 Score=75.98 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=57.2
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|...+.+.++++|||++++||..++..+.++|..+. .+.-+|+|||+...+ ..||+++-+.
T Consensus 149 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~ 221 (252)
T PRK14255 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELR-DQYTIILVTHSMHQASRISDKTAFFL 221 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH-hCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 888 1 7777788899999999999999999999999999997 668999999998875 6799875443
No 209
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.51 E-value=0.00013 Score=75.57 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=57.0
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| . ||...+.+.|+++|||++++||..++..|.++|..+. .+..+|+|||+... ...||.++-+.
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~v~~l~ 219 (250)
T PRK14240 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQQASRISDKTAFFL 219 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHHhhCCEEEEEE
Confidence 888 1 7777778899999999999999999999999999996 67899999999885 56799876554
No 210
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.51 E-value=0.00014 Score=72.52 Aligned_cols=64 Identities=14% Similarity=0.251 Sum_probs=54.4
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchhe
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLV 1051 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~ 1051 (1070)
||| . +|...+.+.|+++|||++++||..++..+.++|.++...+.-+|+|||+...+..++...
T Consensus 130 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 199 (204)
T PRK13538 130 LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRK 199 (204)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceE
Confidence 888 1 777777889999999999999999999999999998524578999999999997766543
No 211
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.51 E-value=0.00014 Score=74.96 Aligned_cols=66 Identities=21% Similarity=0.247 Sum_probs=57.5
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . ||...+.+.|+++|||++++||..++..+.++|.++. .+.-+|+|||....+ ..||.++-+.
T Consensus 144 LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~ 216 (242)
T TIGR03411 144 LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA-GKHSVVVVEHDMEFVRSIADKVTVLH 216 (242)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 888 1 7777778899999999999999999999999999997 678999999998876 4699876554
No 212
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.51 E-value=0.00011 Score=87.21 Aligned_cols=67 Identities=19% Similarity=0.283 Sum_probs=59.6
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeecc
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~ 1055 (1070)
||| - +|=.-++.+|++||||++++||..+...+.+.|..++ .+.-+|+|||++.++..||.++-+..
T Consensus 481 LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~~~~~~D~Ii~l~~ 553 (582)
T PRK11176 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIEKADEILVVED 553 (582)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEEEEC
Confidence 999 2 5555668999999999999999999999999999997 78899999999999999999976643
No 213
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.51 E-value=0.00013 Score=75.69 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=57.0
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|...+.+.|+++|||++++||..++..+.++|++++ ....+|+|||+...+ ..||+++-+.
T Consensus 149 LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~ 221 (252)
T PRK14256 149 LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK-EKYTIIIVTHNMQQAARVSDYTAFFY 221 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCcEEEEECCHHHHHhhCCEEEEEE
Confidence 888 1 6666677889999999999999999999999999997 678999999998875 7899886554
No 214
>KOG0994|consensus
Probab=97.50 E-value=0.38 Score=56.67 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy16118 677 KSQIAKLEAEIDALNARADATEPKIKAIEASMTARGDTISRKK 719 (1070)
Q Consensus 677 ~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~ 719 (1070)
...+...++.+..++.+....+.........+.++...++.|+
T Consensus 1590 ~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1590 DRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333343333333333333333333333344433
No 215
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.00014 Score=76.19 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=57.4
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . +|...+.++|++||||++++||..++..+.++|.++.. .+.-+|+|||+...+..||+++-+.
T Consensus 143 LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~ 216 (269)
T PRK13648 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMN 216 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEE
Confidence 888 1 77777889999999999999999999999999999862 2578999999998888899876553
No 216
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.49 E-value=0.00015 Score=75.87 Aligned_cols=66 Identities=17% Similarity=0.128 Sum_probs=56.8
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| . ||...+.+.|++||||++++||..++..+.++|..++ .+.-+|+|||+... ...||.++-+.
T Consensus 168 LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivsH~~~~i~~~~d~i~~l~ 240 (271)
T PRK14238 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK-KDYSIIIVTHNMQQAARISDKTAFFL 240 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-cCCEEEEEEcCHHHHHHhCCEEEEEE
Confidence 888 1 6767778889999999999999999999999999997 67899999999887 46799876543
No 217
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00015 Score=74.83 Aligned_cols=67 Identities=19% Similarity=0.238 Sum_probs=56.9
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|...+.+.|++||||++++||..++..+.++|.++...+.-+|+|||+.... ..||.++-+.
T Consensus 142 LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~ 215 (242)
T PRK11124 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYME 215 (242)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 888 1 77777788899999999999999999999999999862357899999998887 5699876554
No 218
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.49 E-value=0.00014 Score=75.47 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=56.2
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheee
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gV 1053 (1070)
||| . +|.+.+.+.|+++|||++++||..++..|.++|.++. ...-+|+|||+... ...||+++-+
T Consensus 148 LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l 219 (251)
T PRK14251 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQQAGRISDQTAFL 219 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHHHHHhhcCEEEEE
Confidence 888 1 7766778899999999999999999999999999996 67889999999986 5668987644
No 219
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.49 E-value=0.36 Score=56.08 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhhccCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 885 KLAKSIQEMTSRLQTIQAPNLRAMEK-LEHAKENLMKTNEEFENARKRAKKAKANF 939 (1070)
Q Consensus 885 ~l~~~l~~l~~~l~~l~~~n~~a~~e-~~~~~~~~~~l~~~~~~l~~~~~~l~~~i 939 (1070)
.+...+..+...|... |+|+..+.. +..+...+..+.....++-....-....|
T Consensus 448 ~~~~~i~~l~~~L~~~-pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~i 502 (560)
T PF06160_consen 448 DVSDEIEELSDELNQV-PINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLI 502 (560)
T ss_pred HHHHHHHHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888887 679886554 66677777777777777765544444433
No 220
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00014 Score=74.94 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=56.1
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| - ||.....+.|++||||++++||..++..+.++|..+.. .+.-+|+|||+... ...||.++-+.
T Consensus 134 LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~ 208 (257)
T PRK11247 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIE 208 (257)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1 77777788999999999999999999999999998742 35789999999876 46799876554
No 221
>KOG0978|consensus
Probab=97.48 E-value=0.34 Score=55.50 Aligned_cols=439 Identities=14% Similarity=0.191 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---------HHHhh
Q psy16118 41 KDDYERLKAEMIQAEEETN---MSYLKKKGVVAERKEAKIEKD-EAEKYQRIREEIVAKEVEHQLF---------KLYHN 107 (1070)
Q Consensus 41 ~~~y~~~~~~~~~~~~~~~---~~~~~i~~l~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 107 (1070)
..+|..+............ .....++.+..-+........ ...+|.......-.++...... ....+
T Consensus 240 ~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~~~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l 319 (698)
T KOG0978|consen 240 VKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLKEYERELKDTESDNLKLRKQHSSAADSLESKSRDLESL 319 (698)
T ss_pred HHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHH
Q ss_pred HhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHH-HHH
Q psy16118 108 ETDIKELEDELDKKK-GEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVS-HIQ 185 (1070)
Q Consensus 108 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~ 185 (1070)
.........+..... .-..........+................-..........+.-.+..+..-......++. ...
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~ 399 (698)
T KOG0978|consen 320 LDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDRESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKAR 399 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhhhHHhhhccchhhhhHHHHHHH
Q psy16118 186 KKLASAKKSLVEVRQANEAHNK--DIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHI 263 (1070)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 263 (1070)
..++.+...+..+......-.. .......++.........++.... ....+..++........+.
T Consensus 400 ~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~-------------~~k~ll~e~~t~gsA~ed~ 466 (698)
T KOG0978|consen 400 AETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEK-------------NFKCLLSEMETIGSAFEDM 466 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcccChHhHHHHHHHHHHHhHHHHHHHHHH
Q psy16118 264 QKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATKRAGKILQQL 343 (1070)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 343 (1070)
+..+..+-..+.......-.+-.+..........+......+... +..+......+...+
T Consensus 467 Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~--------------------i~~l~~~~~~~~~~i 526 (698)
T KOG0978|consen 467 QEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQ--------------------ILTLKASVDKLELKI 526 (698)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy16118 344 DTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQEL 423 (1070)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l 423 (1070)
..+..+...+......+..++..+...+........++......++.........+.++...+.+...++.........+
T Consensus 527 ~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rl 606 (698)
T KOG0978|consen 527 GKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRL 606 (698)
T ss_pred HHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhcCCcceecccccccchhhHHHHHHHHhccCCCeEEeCCHHHHH
Q psy16118 424 QKELEQVIEELGDAKTDKHEDTRRKKKQELVENFKKAYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTAR 503 (1070)
Q Consensus 424 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~ 503 (1070)
+.++..+...+...+.....+.....+..-+...+..+. |+.|+.+|..+|-.-+|..+-.-.|...-..+
T Consensus 607 eEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~~Lk---------Cs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etR 677 (698)
T KOG0978|consen 607 EEELERLKRKLERLKKEESGASADEVLAEELKEYKELLK---------CSVCNTRWKDAVITKCGHVFCEECVQTRYETR 677 (698)
T ss_pred HHHHHHHHHHHHHhccccccccccHHHHHHHHHHHhcee---------CCCccCchhhHHHHhcchHHHHHHHHHHHHHh
Q ss_pred HHHHHHhhcCCCCcceecCCCcc
Q psy16118 504 LCIQYLKDHQLDPETFLPIDYLQ 526 (1070)
Q Consensus 504 ~~~~~L~~~~~~~~~~~~~~~~~ 526 (1070)
. ++++.+...|-|.|...
T Consensus 678 q-----RKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 678 Q-----RKCPKCNAAFGANDVHR 695 (698)
T ss_pred c-----CCCCCCCCCCCcccccc
No 222
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.47 E-value=0.00014 Score=71.99 Aligned_cols=63 Identities=22% Similarity=0.257 Sum_probs=54.3
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchh
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSL 1050 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l 1050 (1070)
||| - +|...+.++|+++|||++++||..++..+.++|......+.-+|+|||+......||.+
T Consensus 124 LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 124 LSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 888 1 77777788899999999999999999999999986542567899999999999999875
No 223
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00014 Score=74.34 Aligned_cols=67 Identities=15% Similarity=0.127 Sum_probs=56.9
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| . +|...+.++|++||||++++||..++..|.++|..+.+ .+..+|+|||+... +..||.++-+.
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~ 205 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMN 205 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 888 1 77777788999999999999999999999999999862 26899999999986 67899876554
No 224
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.00017 Score=74.86 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=56.1
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheee
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gV 1053 (1070)
||| . +|...+.+.++++|||++++||..++..|.++|.++. .++.+|+|||+... +..||.++-+
T Consensus 150 LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~~d~v~~l 221 (261)
T PRK14263 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQAIRVADTTAFF 221 (261)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEE
Confidence 888 1 6666677889999999999999999999999999996 67899999999884 6789987655
No 225
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.00016 Score=75.15 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=56.6
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| . +|..-+.+.|++||||++++||..++..+.++|..+. .+.-+|+|||+... ...||.++-+.
T Consensus 150 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~ 222 (253)
T PRK14267 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK-KEYTIVLVTHSPAQAARVSDYVAFLY 222 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-hCCEEEEEECCHHHHHhhCCEEEEEE
Confidence 888 2 6666677889999999999999999999999999997 66899999999887 46799876553
No 226
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.46 E-value=0.00019 Score=74.61 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=59.1
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeecc
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~ 1055 (1070)
||| . ||...+.+.|++||||++++||..+...|.++|..+. .+.-+|+|||+...+..||+++-+..
T Consensus 157 LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~dri~~l~~ 229 (257)
T cd03288 157 FSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTILDADLVLVLSR 229 (257)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHHHhCCEEEEEEC
Confidence 888 1 6666778889999999999999999999999999986 78899999999999999999876653
No 227
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.46 E-value=0.00016 Score=75.16 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=55.5
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhh--cchheee
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSH--ADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~--ad~l~gV 1053 (1070)
||| . +|...+.++|++||||++++||..++..|.++|.++...+.-+|+|||....... +|.++-+
T Consensus 152 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l 225 (252)
T CHL00131 152 FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVM 225 (252)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEE
Confidence 787 1 6777778889999999999999999999999999986246789999999888764 7876544
No 228
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.46 E-value=0.00016 Score=71.96 Aligned_cols=64 Identities=25% Similarity=0.341 Sum_probs=51.1
Q ss_pred hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-C-ceEEEEecCc-chHhhcchheeecc
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-S-LQTIVISLKE-EFFSHADSLVGICP 1055 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~-~Q~i~iT~~~-~~~~~ad~l~gVt~ 1055 (1070)
||++.+.++|+++|||++++||..++..+.++|..+... + +++|+|||.. ..+..+|.++.+..
T Consensus 141 la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l 207 (213)
T cd03277 141 LSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCV 207 (213)
T ss_pred HHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEE
Confidence 445556788999999999999999999999999998623 2 5899999974 67777876544443
No 229
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.46 E-value=0.00019 Score=70.61 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=48.6
Q ss_pred hhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC--Cce-EEEEecCcchHhhcchheeecc
Q psy16118 993 VSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD--SLQ-TIVISLKEEFFSHADSLVGICP 1055 (1070)
Q Consensus 993 al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~--~~Q-~i~iT~~~~~~~~ad~l~gVt~ 1055 (1070)
++|.+.++||++|||++++||..++..+.++|.++... +.+ +|++||....+...| .+||.+
T Consensus 125 ~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d-~v~~~~ 189 (198)
T cd03276 125 SLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSD-DVKVFR 189 (198)
T ss_pred HHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccccccc-ceeEEE
Confidence 44446899999999999999999999999999997522 344 566669887776666 567776
No 230
>KOG0946|consensus
Probab=97.46 E-value=0.22 Score=56.56 Aligned_cols=54 Identities=7% Similarity=0.153 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 114 LEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEI 167 (1070)
Q Consensus 114 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1070)
++..+..+..+++.++.....+....+.+..++.....+...+..++..+..++
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL 715 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333444444444444444444444333333333333444444433333
No 231
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.45 E-value=0.00015 Score=74.25 Aligned_cols=67 Identities=19% Similarity=0.239 Sum_probs=56.4
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| . +|..-..+.|+++|||++++||..++..|.++|.++... +..+|+|||++.. +..||..+.+.
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~ 205 (237)
T TIGR00968 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMS 205 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEE
Confidence 787 1 555566788999999999999999999999999998622 5899999999986 67799887665
No 232
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00018 Score=74.62 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=57.5
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeecc
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGICP 1055 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt~ 1055 (1070)
||| . +|...+.+.|+++|||++++||..+...|.++|..+. .+..+|+|||+...+ ..||+++-+..
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~ 223 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRVAFFQS 223 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEEEEEEC
Confidence 888 1 6666677889999999999999999999999999997 678999999998875 57998765543
No 233
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.45 E-value=0.00018 Score=71.94 Aligned_cols=67 Identities=19% Similarity=0.201 Sum_probs=57.5
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeecc
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~ 1055 (1070)
||| . +|.....+.++++|||++++||...+..+.++|.++...+.-+|+|||+...+.. |..+.+..
T Consensus 128 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 128 LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 888 1 7777778889999999999999999999999999875356789999999998887 88877743
No 234
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=0.00017 Score=75.86 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=58.3
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| - +|...+.+.|+++|||++++||..++..|.++|.++.. .+..+|+|||+...+..||+++-+.
T Consensus 141 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~ 214 (279)
T PRK13650 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMK 214 (279)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEE
Confidence 888 1 77777888999999999999999999999999999863 2689999999998888999876554
No 235
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.45 E-value=0.00016 Score=84.91 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=59.2
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . +|-.-.+++|++||||++++||..+...+.+.|..+. ++.-+|+|||+..++..||..+-+.
T Consensus 452 LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~~~~~d~i~~l~ 523 (569)
T PRK10789 452 LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSALTEASEILVMQ 523 (569)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhHHHcCCEEEEEe
Confidence 899 2 6666678999999999999999999999999999987 7788999999999999999986554
No 236
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.45 E-value=0.00014 Score=71.70 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=48.7
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF 1043 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~ 1043 (1070)
||| . ||...+.+.|++||||++++||..++..|.++|.++...+.-+|+|||+...
T Consensus 128 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 128 LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 888 1 7777788999999999999999999999999999986346799999998753
No 237
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.44 E-value=0.00019 Score=74.94 Aligned_cols=66 Identities=14% Similarity=0.124 Sum_probs=57.2
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| - +|...+.+.++++|||++++||..++..+.++|..+. .+..+|+|||+... +..||.++-+.
T Consensus 164 LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~ 236 (267)
T PRK14237 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARASDYTAFFY 236 (267)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCEEEEEE
Confidence 888 1 7777778889999999999999999999999999997 67899999999865 57899876554
No 238
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.44 E-value=0.00019 Score=74.60 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=57.1
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| . ||.....+.|++||||++++||..++..+.++|+.+. .+.-+|+|||+...+. .||+++-+.
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~ 221 (252)
T PRK14272 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMHQAARVSDTTSFFL 221 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1 7777778889999999999999999999999999997 6789999999988765 689876553
No 239
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.44 E-value=7.1e-05 Score=75.13 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=32.5
Q ss_pred CccccceecccccccCcccccCCCC-----eEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLKK-----FTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~~-----l~lI~G~nGaG 38 (1070)
|++.+|+|.||++|++.+.| +|.. +++|.||||||
T Consensus 1 m~~~~i~l~nf~~y~~~~~i-~~~~~~~~~~~~i~G~NGsG 40 (213)
T cd03279 1 MKPLKLELKNFGPFREEQVI-DFTGLDNNGLFLICGPTGAG 40 (213)
T ss_pred CEEEEEEEECCcCcCCceEE-eCCCCCccCEEEEECCCCCC
Confidence 89999999999999998888 8862 99999999999
No 240
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.44 E-value=0.0002 Score=74.20 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=56.4
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| . +|...+.+.+++||||++++||..++..+.++|.+++ ...-+|+|||+... ...||.++-+.
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~ 218 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK-KNYTIVIVTHSMQQARRISDRTAFFL 218 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEecCHHHHHHhCCEEEEEE
Confidence 888 1 6666677889999999999999999999999999997 66899999999886 55699876554
No 241
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.44 E-value=0.00022 Score=74.09 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=57.8
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheee
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
||| - ||-..+.+++++||||++++||..+...+.++|.... .++-+|+|||+..++..||+++-+
T Consensus 139 LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~dri~vl 209 (275)
T cd03289 139 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAMLECQRFLVI 209 (275)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHhCCEEEEe
Confidence 888 1 7777788999999999999999999999999999887 788999999999999999987544
No 242
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.44 E-value=0.00021 Score=75.37 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=56.9
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . ||...+.+.|++||||++++||...+..|.++|..+. .+.-+|+|||+...+ ..||+++-+.
T Consensus 183 LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~~~tvIivsH~~~~~~~~~d~i~~L~ 255 (286)
T PRK14275 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR-GSYTIMIVTHNMQQASRVSDYTMFFY 255 (286)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1 7777778889999999999999999999999999997 667899999998875 6799876554
No 243
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.43 E-value=0.00018 Score=74.15 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=56.7
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc-hHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE-FFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~-~~~~ad~l~gVt 1054 (1070)
||| . ||...+.+.|+++|||++++||...+..|.++|..+...+.-+|+|||+.. +...||..+.+.
T Consensus 138 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~ 211 (241)
T PRK10895 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVS 211 (241)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 888 1 777778899999999999999999999999999988634678999999984 667899876554
No 244
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.43 E-value=0.00018 Score=74.83 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=56.7
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..|.++|.++.. .+.-+|+|||....+. .||.++-+.
T Consensus 149 LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~ 223 (253)
T TIGR02323 149 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQ 223 (253)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 888 177777889999999999999999999999999998752 2689999999988776 689875543
No 245
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.43 E-value=0.00017 Score=75.48 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=56.3
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheee
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGI 1053 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gV 1053 (1070)
||| . +|...+.+.|+++|||++++||..++..|.++|..++ .+.-+|+|||+.... ..||+++-+
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~~~tiiivth~~~~~~~~~d~i~~l 233 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK-NKVTILIVTHNMQQAARVSDYTAYM 233 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hCCEEEEEecCHHHHHHhCCEEEEE
Confidence 888 1 7777778889999999999999999999999999997 678999999998765 679987544
No 246
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.43 E-value=0.00019 Score=76.34 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=55.5
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheee
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gV 1053 (1070)
||| - +|...+.+.|++||||++++||..+...|.++|.++. ....+|+|||+... ...||..+.+
T Consensus 201 LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~-~~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELA-EEYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 777 1 7777778889999999999999999999999999997 66889999999877 4679985433
No 247
>KOG0612|consensus
Probab=97.43 E-value=0.52 Score=56.52 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=15.5
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 105 YHNETDIKELEDELDKKKGEVEKIERRKEKAENILR 140 (1070)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 140 (1070)
......+....++...+...+..+..+++.++....
T Consensus 497 ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~ 532 (1317)
T KOG0612|consen 497 KEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKND 532 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444433333
No 248
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.43 E-value=0.00018 Score=74.06 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=55.8
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchH-hhcchheee
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFF-SHADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~-~~ad~l~gV 1053 (1070)
||| . ||...+.++|+++|||++++||..++..+.++|.++... +.-+|+|||+...+ ..||..+-+
T Consensus 121 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l 194 (251)
T PRK09544 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL 194 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 888 1 777777889999999999999999999999999988522 57899999998875 679987644
No 249
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.43 E-value=0.00018 Score=73.99 Aligned_cols=67 Identities=24% Similarity=0.186 Sum_probs=56.1
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|...+.+.+++||||++++||..++..+.++|..+.. .+.-+|+|||+...+ ..||.++-+.
T Consensus 132 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~ 206 (241)
T PRK14250 132 LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLN 206 (241)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEe
Confidence 888 1 67666788899999999999999999999999999852 267899999998864 5799876554
No 250
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.43 E-value=0.00018 Score=74.97 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=57.0
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| .||...+.+.|+++|||++++||..+...+.++|..+... +.-+|+|||+..... .||.++-+.
T Consensus 152 LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~ 226 (258)
T PRK11701 152 FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMK 226 (258)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEE
Confidence 888 1776667889999999999999999999999999988622 678999999999886 799876554
No 251
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.42 E-value=0.00016 Score=85.63 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=58.7
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| - +|=.-++++|+++|||++++||..+...+.+.|..++ +++-+|+|||++.++..||..+-+.
T Consensus 477 LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~-~~~tvIivtHr~~~l~~~D~ii~l~ 548 (592)
T PRK10790 477 LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR-EHTTLVVIAHRLSTIVEADTILVLH 548 (592)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEEEE
Confidence 898 2 5555568999999999999999999999999999997 7899999999999999999987553
No 252
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.42 E-value=0.00016 Score=75.54 Aligned_cols=67 Identities=10% Similarity=0.170 Sum_probs=56.7
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| . ||...+.+.|+++|||++++||..++..+.++|.++.. .+.-+|+|||+...+. .||.++-+.
T Consensus 150 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~ 224 (267)
T PRK15112 150 LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMH 224 (267)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEE
Confidence 888 1 77777888999999999999999999999999999852 2578999999988876 589876554
No 253
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.42 E-value=0.00018 Score=75.10 Aligned_cols=67 Identities=22% Similarity=0.202 Sum_probs=56.8
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . ||.....+.|++||||++++||..++..|.++|..++. .+.-+|+|||+.... ..||.++-+.
T Consensus 148 LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~ 222 (265)
T PRK10575 148 LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALR 222 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1 77777889999999999999999999999999999852 257899999998866 6799876554
No 254
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.42 E-value=0.00021 Score=71.84 Aligned_cols=66 Identities=21% Similarity=0.248 Sum_probs=55.4
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheee
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGI 1053 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gV 1053 (1070)
||| . ||...+.+.|+++|||++++||..++..|.++|..+...+.-+|+|||....+ ..+|.++-+
T Consensus 138 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l 210 (214)
T PRK13543 138 LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTL 210 (214)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEE
Confidence 888 1 77777889999999999999999999999999998753567899999998755 677776644
No 255
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.0002 Score=74.98 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=56.8
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| . +|...+.+.|++||||++++||..++..|.++|.++. ....+|+|||.... ...||+++-+.
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiiivsH~~~~~~~~~dri~~l~ 236 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA-DRLTVIIVTHNLAQAARISDRAALFF 236 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1 6666677889999999999999999999999999997 67899999999886 56799876554
No 256
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.41 E-value=0.0002 Score=74.49 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=56.4
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| . +|.......|+++|||++++||..++..|.++|..+...+.-+|+|||+... ...+|.++-+.
T Consensus 139 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~ 212 (255)
T PRK11231 139 LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLA 212 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEE
Confidence 888 1 6666677889999999999999999999999999986246789999999886 56899876553
No 257
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.41 E-value=0.00019 Score=76.13 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=56.2
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc-hHhhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE-FFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~-~~~~ad~l~gV 1053 (1070)
||| ++|-..+.+.++++|||++++||..++..|.++|..+...+.-+|+|||+.. +...||+.+-+
T Consensus 166 LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl 238 (305)
T PRK13651 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238 (305)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence 898 1777777888999999999999999999999999998524678999999976 56889987644
No 258
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.41 E-value=0.00019 Score=75.67 Aligned_cols=67 Identities=18% Similarity=0.154 Sum_probs=56.4
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| - ||...+.+.|++||||++++||..++..|.++|..+...+.-+|+|||+...+ ..||.++-+.
T Consensus 146 LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 219 (280)
T PRK13649 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLE 219 (280)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEE
Confidence 888 1 77777788899999999999999999999999999852357899999998866 6799876554
No 259
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.41 E-value=0.0002 Score=74.32 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=56.4
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .+|.+.+.+.|++||||++++||..++..|.++|..++. .+.-+|+|||+...+ ..+|+++-+.
T Consensus 141 LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~ 215 (254)
T PRK10418 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMS 215 (254)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEE
Confidence 888 177777788899999999999999999999999999852 257899999998876 5799876553
No 260
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.00022 Score=75.11 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=54.6
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchhe
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLV 1051 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~ 1051 (1070)
||| .+|...+.+.+++||||++++||..++..+.++|..++ .+.-+|+|||+...+ ..||+.+
T Consensus 181 LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~-~~~tiii~tH~~~~i~~~~dri~ 250 (285)
T PRK14254 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA-EEYTVVIVTHNMQQAARISDKTA 250 (285)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCEEE
Confidence 787 17777778889999999999999999999999999997 567899999998875 4689754
No 261
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.40 E-value=0.0002 Score=74.34 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=55.9
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|...+.+.++++|||++++||..++..|.++|.++... +..+|+|||+.... ..||.++-+.
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 221 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFD 221 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEE
Confidence 888 1 666667788999999999999999999999999998622 67999999998776 6799876443
No 262
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=0.0002 Score=74.93 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=56.5
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| . +|...+.+.|++||||++++||..++..|.++|.+++. .+.-+|+|||+... ...||.++-+.
T Consensus 161 LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~ 235 (269)
T cd03294 161 LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMK 235 (269)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 888 1 77777888999999999999999999999999999852 25789999999876 46799876554
No 263
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00021 Score=74.60 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=56.9
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcc-hHhhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEE-FFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~-~~~~ad~l~gVt 1054 (1070)
||| . +|...+.+.++++|||++++||..++..+.++|.++.. .+.-+|+|||+.. ++..||.++-+.
T Consensus 144 LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~ 218 (265)
T PRK10253 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALR 218 (265)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1 77777788899999999999999999999999999862 2578999999987 668899886654
No 264
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.40 E-value=0.00018 Score=85.31 Aligned_cols=67 Identities=25% Similarity=0.274 Sum_probs=59.8
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeecc
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~ 1055 (1070)
||| ++|=.-++++|+++|||++++||..+...+.+.|..+. ++.-+|+|||++..+..+|..+.+..
T Consensus 477 LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~~~~~d~vi~l~~ 549 (576)
T TIGR02204 477 LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLATVLKADRIVVMDQ 549 (576)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEEEEC
Confidence 888 25555678999999999999999999999999999997 78999999999999999999876654
No 265
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.39 E-value=0.00022 Score=72.96 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=56.7
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| . +|...+.++|+++|||++++||..++..|.++|.++.. .+.-+|+|||....+. .||.++-+.
T Consensus 132 LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 132 LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVME 206 (230)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1 77777889999999999999999999999999999862 2578999999988776 689876553
No 266
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.39 E-value=0.00022 Score=75.94 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=56.1
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gV 1053 (1070)
||| .||...+.+.|+++|||++++||..++..|.++|.++...+.-+|++||....+ ..||.++-+
T Consensus 125 LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l 197 (302)
T TIGR01188 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAII 197 (302)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 888 177777889999999999999999999999999999863457899999998766 468986544
No 267
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.39 E-value=0.00019 Score=74.93 Aligned_cols=67 Identities=13% Similarity=0.098 Sum_probs=57.1
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| .||...+.+.++++|||++++||..++..+.++|..+.. .++-+|+|||+...+. .||.++-+.
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~ 226 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMD 226 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEE
Confidence 887 177777788899999999999999999999999999862 2679999999988775 799887664
No 268
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.39 E-value=0.00019 Score=75.05 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=54.9
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcch-Hhhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEF-FSHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~-~~~ad~l~gV 1053 (1070)
||| .||.+.+.+.|++||||++++||..++..|.++|.++... +.-+|+|||+... ...||.++-+
T Consensus 144 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l 217 (269)
T PRK11831 144 LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIV 217 (269)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEE
Confidence 888 1777777888999999999999999999999999998522 5789999999654 5668986544
No 269
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.00024 Score=76.08 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=56.3
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchheee
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLVGI 1053 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~gV 1053 (1070)
||| - +|-..+..+|+++|||++++||..+...+.++|..+. .+.-+|+|||+..++. .||+.+-+
T Consensus 226 LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~-~~~Tii~iTH~l~~i~~~~Driivl 297 (329)
T PRK14257 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK-KKYSIIIVTHSMAQAQRISDETVFF 297 (329)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 777 1 6666678999999999999999999999999999997 7789999999999865 59987544
No 270
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.39 E-value=0.0002 Score=74.95 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=56.8
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchHhhcchheee
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
||| . +|...+.+.|+++|||++++||..++..|.++|.++... +.-+|+|||+...+..||.++-+
T Consensus 143 LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l 215 (271)
T PRK13632 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVF 215 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEE
Confidence 888 1 777778889999999999999999999999999998622 37999999999888889987644
No 271
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.39 E-value=0.00024 Score=74.44 Aligned_cols=67 Identities=19% Similarity=0.144 Sum_probs=57.5
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .+|.....+.+++||||++++||..++..|.++|..+...+.-+|+|||+...+ ..||.++-+.
T Consensus 139 LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~ 212 (274)
T PRK13647 139 LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLK 212 (274)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 177777788999999999999999999999999999962467899999998876 7899876554
No 272
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.38 E-value=0.1 Score=51.39 Aligned_cols=47 Identities=26% Similarity=0.408 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy16118 680 IAKLEAEIDALNARADATEPKIKAIEASMTARGDTISRKKEEMNSVE 726 (1070)
Q Consensus 680 l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~l~ 726 (1070)
+..+..++..+...+..++..+..+++.+..++.+|..+...+...+
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444444433
No 273
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.00024 Score=74.39 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=57.9
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| - ||...+.+.|+++|||++++||..++..|.++|..+...+.-+|+|||....+..||..+-+.
T Consensus 137 LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~ 209 (274)
T PRK13644 137 LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMD 209 (274)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 888 1 777777888999999999999999999999999988524678999999999999999876554
No 274
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.38 E-value=0.00023 Score=75.87 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=56.7
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..|.++|.++...+.-+|+|||....+ ..||.++-+.
T Consensus 136 LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~ 209 (303)
T TIGR01288 136 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLE 209 (303)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 888 177777788899999999999999999999999999853467899999998866 5799876553
No 275
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.00023 Score=74.59 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=55.7
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheee
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gV 1053 (1070)
||| . +|...+.+.++++|||++++||...+..+.++|..+. ...-+|+|||+... ...||..+-+
T Consensus 165 LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~v~~l 236 (268)
T PRK14248 165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK-EEYSIIIVTHNMQQALRVSDRTAFF 236 (268)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEEeCHHHHHHhCCEEEEE
Confidence 888 2 6766778889999999999999999999999999997 56789999999875 5678987544
No 276
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.38 E-value=0.0002 Score=83.65 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=58.5
Q ss_pred hhh----h--hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchhee
Q psy16118 988 VST----T--IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVG 1052 (1070)
Q Consensus 988 LSG----t--~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~g 1052 (1070)
||| . +|-.-+.+.|..+|||.+++||..+-..+.+.|.++. .++=+|+||||+.|...||+.|-
T Consensus 610 LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~ti~~adrIiV 679 (709)
T COG2274 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLSTIRSADRIIV 679 (709)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccchHhhhccEEEE
Confidence 999 2 5555678999999999999999999999999999998 89999999999999999999863
No 277
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.00025 Score=74.32 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=56.6
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| - +|...+.+.+++||||++++||..++..|.++|.++. .+.-+|+|||+...+ ..||.++-+.
T Consensus 162 LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK-EQYTIIMVTHNMQQASRVADWTAFFN 234 (274)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 888 1 6666678889999999999999999999999999997 678899999998654 7899887553
No 278
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.00024 Score=74.99 Aligned_cols=68 Identities=18% Similarity=0.108 Sum_probs=57.2
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeecc
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGICP 1055 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt~ 1055 (1070)
||| .+|...+.+.|++||||++++||..++..|.++|..+...+.-+|+|||....+ ..||+++-+..
T Consensus 145 LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~ 219 (288)
T PRK13643 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEK 219 (288)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 888 177777788899999999999999999999999999852467899999998865 68998765543
No 279
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.00024 Score=74.65 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=57.9
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchHhhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . ||-..+.+.++++|||++++||..++..+.++|.+++.. ++-+|+|||....+..||..+-+.
T Consensus 141 LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~ 214 (279)
T PRK13635 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMN 214 (279)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEE
Confidence 888 1 777777888999999999999999999999999998722 689999999999888999876554
No 280
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.00025 Score=73.51 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=57.5
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|-..+.+.|++||||++++||..+...+.++|..+. ..+.+|+|||+...+ ..||.++-+.
T Consensus 154 LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiilvsh~~~~~~~~~d~v~~l~ 226 (257)
T PRK14246 154 LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK-NEIAIVIVSHNPQQVARVADYVAFLY 226 (257)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCcEEEEEECCHHHHHHhCCEEEEEE
Confidence 887 1 6666677889999999999999999999999999997 679999999998877 7899877664
No 281
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.37 E-value=0.00022 Score=71.94 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=55.3
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheee
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gV 1053 (1070)
||| . +|...+.+.|+++|||++++||..++..+.++|.++.. .+.-+|+|||.... ...||.++-+
T Consensus 131 LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 204 (213)
T cd03301 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVM 204 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 888 1 77777888999999999999999999999999999852 25789999999876 4568987654
No 282
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.37 E-value=0.00022 Score=74.71 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=54.0
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchhe
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLV 1051 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~ 1051 (1070)
||| . +|...+.+.|+++|||++++||..++..|.++|.++...+.-+|+|||+... ...||.++
T Consensus 143 LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~ 213 (272)
T PRK15056 143 LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTV 213 (272)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 888 1 7777778899999999999999999999999999985235689999999865 57888753
No 283
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.37 E-value=0.00026 Score=74.26 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=57.7
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeecc
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGICP 1055 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt~ 1055 (1070)
||| . +|...+.+.+++||||++++||..++..|.++|.+++ .+.-+|+|||+...+ ..||.++-+..
T Consensus 169 LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~ 242 (272)
T PRK14236 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-SKYTIVIVTHNMQQAARVSDYTAFMYM 242 (272)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCeEEEEeCCHHHHHhhCCEEEEEEC
Confidence 888 1 7777778899999999999999999999999999997 678899999998864 67998866553
No 284
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.37 E-value=0.00021 Score=84.17 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=59.5
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeecc
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~ 1055 (1070)
||| ++|=.-.+++|++||||..+++|..+-..+.+.|..+. ++...|+|+||..++..||.++.+..
T Consensus 466 LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~aD~IiVl~~ 538 (567)
T COG1132 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKNADRIIVLDN 538 (567)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHhCCEEEEEEC
Confidence 999 26666678999999999999999999999999999887 77788999999999999999876554
No 285
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.37 E-value=0.00033 Score=72.04 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=55.9
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| . +|...+.++|+++|||++++||..++..|..+|..+...+.=+|+|||....+. .||.++.+.
T Consensus 140 LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~ 213 (255)
T cd03236 140 LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY 213 (255)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC
Confidence 888 1 666667788999999999999999999999999998623567999999988776 699876553
No 286
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.36 E-value=0.00026 Score=73.35 Aligned_cols=66 Identities=15% Similarity=0.052 Sum_probs=56.0
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheee
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGI 1053 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gV 1053 (1070)
||| . ||...+.++|+++|||++++||...+..+.++|..+...+..+|+|||....+ ..||.++-+
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l 216 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWI 216 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEE
Confidence 888 1 77777889999999999999999999999999998853568999999998765 578987544
No 287
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.36 E-value=0.00026 Score=85.49 Aligned_cols=66 Identities=14% Similarity=0.256 Sum_probs=58.7
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| - +|=.-++++|++||||++++||..+...+.+.|..+. ++.-+|+|||+..++..||.++-+.
T Consensus 602 LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~~~~~~D~iivl~ 673 (694)
T TIGR03375 602 LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSLLDLVDRIIVMD 673 (694)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhCCEEEEEe
Confidence 898 1 5555568999999999999999999999999999997 8899999999999999999987553
No 288
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.36 E-value=0.00031 Score=69.86 Aligned_cols=62 Identities=18% Similarity=0.278 Sum_probs=51.5
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcch
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADS 1049 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~ 1049 (1070)
||| . +|.+.+.+.|++||||++++||..++..+.++|.++...+.-+|+|||++.....+..
T Consensus 126 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~ 193 (201)
T cd03231 126 LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGA 193 (201)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccc
Confidence 888 1 7777788999999999999999999999999999885345679999998776555443
No 289
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.36 E-value=0.00025 Score=75.68 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=56.9
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| ++|...+.+.|++||||++++||...+..+.++|..+...+.-+|+|||+...+ ..||.++-+.
T Consensus 177 LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~ 250 (320)
T PRK13631 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMD 250 (320)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 888 177777789999999999999999999999999998853467899999998855 7899876544
No 290
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.36 E-value=0.00025 Score=74.85 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=57.3
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchH-hhcchheeecc
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFF-SHADSLVGICP 1055 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~-~~ad~l~gVt~ 1055 (1070)
||| - +|...+.+.|++||||++++||..++..|.++|.++... +.-+|+|||....+ ..||+.+-+..
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~ 220 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNK 220 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 888 1 666667788999999999999999999999999998632 67999999998766 67999876653
No 291
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.36 E-value=0.00025 Score=83.35 Aligned_cols=67 Identities=25% Similarity=0.273 Sum_probs=59.6
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeecc
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~ 1055 (1070)
||| ++|-.-..++|++||||++++||..+...+.+.|..+. .+.-+|+|||+..++..||..+-+..
T Consensus 472 LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~~~~~d~i~~l~~ 544 (585)
T TIGR01192 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLSTVRNADLVLFLDQ 544 (585)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHHHHcCCEEEEEEC
Confidence 898 26666678999999999999999999999999999987 77889999999999999999875543
No 292
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.36 E-value=0.00025 Score=73.90 Aligned_cols=67 Identities=13% Similarity=0.223 Sum_probs=56.8
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| - +|...+.+.|+++|||++++||..++..+.++|..+... +.-+|+|||....+ ..||.++-+.
T Consensus 154 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 228 (255)
T PRK11300 154 LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVN 228 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1 777778888999999999999999999999999998622 57899999998876 6699876554
No 293
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.00031 Score=69.74 Aligned_cols=68 Identities=10% Similarity=0.147 Sum_probs=59.1
Q ss_pred hhh-----h-hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecC-cchHhhcchheeecc
Q psy16118 988 VST-----T-IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLK-EEFFSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG-----t-~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~-~~~~~~ad~l~gVt~ 1055 (1070)
||| . +|-.....+.+++|||+++++|..+...|.++|.++...+.=+++|||. ..++..+|..+.+-+
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~ 214 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR 214 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC
Confidence 999 2 8888888999999999999999999999999999996457899999997 567778998776655
No 294
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.35 E-value=0.00025 Score=83.20 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=59.0
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| - +|-.-++++|++||||++++||..+...+.+.|..+. ++.-+|+|||++.++..||.++-+.
T Consensus 476 LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~~~~d~i~~l~ 547 (574)
T PRK11160 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGLEQFDRICVMD 547 (574)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHHHhCCEEEEEe
Confidence 999 2 5555668999999999999999999999999999997 7889999999999999999987554
No 295
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00023 Score=75.35 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=56.3
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| . +|...+.+.|+++|||++++||..++..|.++|..+.. .+.-+|+|||+... ...||.++-+.
T Consensus 151 LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~ 225 (289)
T PRK13645 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMH 225 (289)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 888 1 77777788899999999999999999999999999852 26789999999875 56899876554
No 296
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.33 E-value=0.00031 Score=73.26 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=56.7
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc-hHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE-FFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~-~~~~ad~l~gVt 1054 (1070)
||| . ||...+...+++||||++++||..++..|.++|..++ ...-+|+|||+.. +...||.++-+.
T Consensus 152 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tvi~vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK-EQYTIIIVTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 888 1 7777777889999999999999999999999999997 6689999999976 568889876554
No 297
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.33 E-value=0.00028 Score=74.13 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=57.5
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . +|...+.+.|++||||++++||..++..|.++|..+... +.-+|+|||+...+..||..+-+.
T Consensus 141 LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~ 214 (277)
T PRK13642 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMK 214 (277)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEE
Confidence 888 2 776677788999999999999999999999999998632 689999999999988899876444
No 298
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.33 E-value=0.00026 Score=73.87 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=56.7
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| - ||...+.+.++++|||++++||..++..|.++|..++. .+.-+|+|||+... +..||.++-+.
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~ 227 (262)
T PRK09984 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALR 227 (262)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 887 1 66666778889999999999999999999999999862 25899999999984 78899887664
No 299
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.33 E-value=0.00027 Score=76.38 Aligned_cols=67 Identities=16% Similarity=0.220 Sum_probs=56.3
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .+|.+.+.+.|+++|||++++||..++..+.++|.++... +.-+|+|||+...+ ..||.++-+.
T Consensus 141 LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~ 215 (343)
T PRK11153 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVID 215 (343)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1777778889999999999999999999999999998522 57899999998775 5699876553
No 300
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.32 E-value=0.00028 Score=82.57 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=58.4
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| - +|-.-++++|++||||++++||..+...+.+.|..+..++..+|+|||+..++..||..|.+.
T Consensus 455 LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~ 527 (544)
T TIGR01842 455 LSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQ 527 (544)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEE
Confidence 899 1 666667899999999999999999999999999988424679999999999999999987664
No 301
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.32 E-value=0.00013 Score=72.60 Aligned_cols=36 Identities=50% Similarity=0.990 Sum_probs=31.8
Q ss_pred CccccceecccccccCcccccCCC-CeEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLK-KFTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~-~l~lI~G~nGaG 38 (1070)
|.+.+|+|.||++|.+..++++++ .+++|.||||||
T Consensus 1 ~~~~~l~l~nfk~~~~~~~l~~~~~~i~~ivGpNGaG 37 (212)
T cd03274 1 LIITKLVLENFKSYAGEQVIGPFHKSFSAIVGPNGSG 37 (212)
T ss_pred CeEEEEEEECcccCCCCeeeccCCCCeEEEECCCCCC
Confidence 789999999999999988874454 499999999999
No 302
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.00032 Score=72.99 Aligned_cols=66 Identities=18% Similarity=0.114 Sum_probs=56.8
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|.+...+.|+++|||++++||..+...+.++|..+. ...-+|+|||+...+ ..||.++-+.
T Consensus 151 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~i~~~~d~i~~l~ 223 (259)
T PRK14260 151 LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR-SELTIAIVTHNMQQATRVSDFTAFFS 223 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCeEEEEe
Confidence 888 1 7777778889999999999999999999999999997 668899999998765 6789876554
No 303
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.32 E-value=0.00029 Score=73.55 Aligned_cols=68 Identities=15% Similarity=0.076 Sum_probs=57.0
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHh-hcchheeecc
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFS-HADSLVGICP 1055 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~-~ad~l~gVt~ 1055 (1070)
||| . +|...+.+.|+++|||++++||..+...|.++|.++.. .+.-+|+|||....+. .||.++-+..
T Consensus 151 LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~ 226 (265)
T TIGR02769 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDK 226 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeC
Confidence 888 1 66666778899999999999999999999999999852 2578999999988775 7998876653
No 304
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.31 E-value=0.00027 Score=85.29 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=58.8
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| - +|-.-.+++|++||||++++||..+...+.+.|..+. ++.-+|+|||++.++..||..+-+.
T Consensus 594 LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~ii~l~ 665 (694)
T TIGR01846 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTVRACDRIIVLE 665 (694)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHHHHhCCEEEEEe
Confidence 888 1 5555678999999999999999999999999999997 7889999999999999999986553
No 305
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.31 E-value=0.00014 Score=69.98 Aligned_cols=33 Identities=42% Similarity=0.819 Sum_probs=29.1
Q ss_pred cccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 5 LQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 5 ~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
+.+|+|.||++|.+.+++ ++.+ +|+|+||||||
T Consensus 1 i~~i~l~nf~~~~~~~~~-~~~~~~~~i~G~NGsG 34 (178)
T cd03239 1 IKQITLKNFKSYRDETVV-GGSNSFNAIVGPNGSG 34 (178)
T ss_pred CcEEEEECccCCCCCEEe-cCCCceEEEECCCCCC
Confidence 468999999999988777 5555 99999999999
No 306
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.31 E-value=0.00029 Score=74.25 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=56.6
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| . +|.....+.|++||||++++||..++..|.++|.+++.. +.-+|+|||+...+. .||..+-+.
T Consensus 142 LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~ 216 (283)
T PRK13636 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMK 216 (283)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 888 2 666667788999999999999999999999999998622 679999999988775 799876553
No 307
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.31 E-value=0.0003 Score=74.08 Aligned_cols=67 Identities=21% Similarity=0.171 Sum_probs=57.7
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . +|...+.+.|++||||++++||..++..+.++|.++.. .+.-+|+|||+...+..||.++-+.
T Consensus 145 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~ 218 (280)
T PRK13633 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMD 218 (280)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEE
Confidence 888 1 77777888899999999999999999999999999852 2679999999999998899876443
No 308
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.31 E-value=0.00033 Score=72.22 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=47.8
Q ss_pred CCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc-hHhhcchheeec
Q psy16118 999 PAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE-FFSHADSLVGIC 1054 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~-~~~~ad~l~gVt 1054 (1070)
++++++|||++++||..++..|.++|..+...+.-+|+|||... +...||.++-+.
T Consensus 151 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~ 207 (248)
T PRK03695 151 AGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLK 207 (248)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 35799999999999999999999999998634578999999977 678899876443
No 309
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.30 E-value=0.00037 Score=69.81 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=53.3
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| +||.....++|+++|||+.+++|..+...+..+|.......+ +|+|||....+ ..||.++-+.
T Consensus 105 lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~-ii~vsH~~~~~~~~~d~i~~l~ 177 (213)
T PRK15177 105 YSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKG-LIVLTHNPRLIKEHCHAFGVLL 177 (213)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCc-EEEEECCHHHHHHhcCeeEEEE
Confidence 777 177777889999999999999999999999998865431334 99999999876 4799886554
No 310
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.29 E-value=0.0003 Score=69.86 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=50.0
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhh
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSH 1046 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ 1046 (1070)
||| . +|.+.+.+.|+++|||++++||..++..|.++|..+...+.-+|+|||++.-+-.
T Consensus 128 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~ 192 (198)
T TIGR01189 128 LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE 192 (198)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc
Confidence 888 1 7777788999999999999999999999999999874356789999999854433
No 311
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.28 E-value=0.00038 Score=73.05 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=56.1
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchheee
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~gV 1053 (1070)
||| . ||.....+.|++||||++++||..++..+..+|..+...+.-+|+|||+..... .||.++-+
T Consensus 138 LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l 210 (275)
T PRK13639 138 LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVM 210 (275)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 888 1 777778899999999999999999999999999998623578999999988754 79987544
No 312
>KOG0612|consensus
Probab=97.28 E-value=0.76 Score=55.21 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=10.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 108 ETDIKELEDELDKKKGEVEKIERRKEK 134 (1070)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 134 (1070)
..+...+...+..+..+++.++.....
T Consensus 507 ~~~~~~l~~~~~~~~eele~~q~~~~~ 533 (1317)
T KOG0612|consen 507 EAKKRKLEALVRQLEEELEDAQKKNDN 533 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333333
No 313
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.28 E-value=0.00057 Score=69.75 Aligned_cols=66 Identities=15% Similarity=0.260 Sum_probs=53.7
Q ss_pred hhh--h----hhhccccC---CCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheee
Q psy16118 988 VST--T----IVSHRYHP---APFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~~~---~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
||| . +|.....+ .++++|||++++||...+..+.++|..+...+.-+|+|||+..++..||.++-+
T Consensus 170 LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~ii~L 244 (261)
T cd03271 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWIIDL 244 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEe
Confidence 888 2 44444443 469999999999999999999999999863456899999999999999976544
No 314
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.27 E-value=0.00035 Score=72.82 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=55.4
Q ss_pred hhh--h----hhhccc---------cCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchH-hhcchh
Q psy16118 988 VST--T----IVSHRY---------HPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFF-SHADSL 1050 (1070)
Q Consensus 988 LSG--t----~al~~~---------~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~-~~ad~l 1050 (1070)
||| . ||.+.+ .+.++++|||++++||..++..|.++|.++... +.-+|+|||+...+ ..||.+
T Consensus 146 LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i 225 (272)
T PRK13547 146 LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRI 225 (272)
T ss_pred CCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 888 1 555555 367899999999999999999999999998622 57899999998876 479988
Q ss_pred eeecc
Q psy16118 1051 VGICP 1055 (1070)
Q Consensus 1051 ~gVt~ 1055 (1070)
+-+..
T Consensus 226 ~~l~~ 230 (272)
T PRK13547 226 AMLAD 230 (272)
T ss_pred EEEEC
Confidence 76653
No 315
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.27 E-value=0.00036 Score=73.49 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=57.3
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . +|...+.+.|++||||++++||..++..+.++|..++. .+..+|+|||+...+..||+.+-+.
T Consensus 144 LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~ 217 (282)
T PRK13640 144 LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLD 217 (282)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEE
Confidence 888 1 66666778899999999999999999999999999863 2689999999999999999876553
No 316
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.27 E-value=0.0004 Score=73.89 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=57.0
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc-hHhhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE-FFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~-~~~~ad~l~gVt 1054 (1070)
||| - ||...+...|+++|||++++||..++..|.++|..+. .+..+|++||... +...||+++-+.
T Consensus 134 LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sH~l~~~~~~~d~i~~l~ 206 (301)
T TIGR03522 134 LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-KDKTIILSTHIMQEVEAICDRVIIIN 206 (301)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 888 1 7777778889999999999999999999999999997 6789999999987 567799875543
No 317
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.26 E-value=0.00046 Score=69.81 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=53.8
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHH--HHHHhcCCCceEEEEecCcchHhhcchhe
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVAS--YIVTKTQDSLQTIVISLKEEFFSHADSLV 1051 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~--~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~ 1051 (1070)
||| . +|.....+.++++|||++++||..++..+.+ ++..+...+.-+|+|||....+..||.++
T Consensus 141 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~ 212 (218)
T cd03290 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWII 212 (218)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEE
Confidence 888 1 7777778889999999999999999999988 67666424578999999999998898765
No 318
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.26 E-value=0.00037 Score=72.65 Aligned_cols=67 Identities=19% Similarity=0.096 Sum_probs=56.1
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|.....+.|+++|||++++||..++..+.++|..++. .+.-+|+|||+.... ..||.++-+.
T Consensus 151 LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~ 225 (261)
T PRK14258 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFK 225 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEc
Confidence 888 1 77777788999999999999999999999999999742 368999999998865 5789876444
No 319
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.26 E-value=0.35 Score=50.90 Aligned_cols=53 Identities=9% Similarity=0.166 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 335 RAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDK 387 (1070)
Q Consensus 335 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 387 (1070)
.+.-.......++..+.....-+..+..++..+...+..+..+........+.
T Consensus 217 QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~ 269 (309)
T PF09728_consen 217 QLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEK 269 (309)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555555555544444444444444444333333
No 320
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.25 E-value=0.0004 Score=76.88 Aligned_cols=67 Identities=15% Similarity=0.037 Sum_probs=56.5
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| - ||...+.++|++||||++++||...+..|.++|..+...+.-+|+|||....+ ..||.++-+.
T Consensus 144 LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~ 217 (549)
T PRK13545 144 YSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLH 217 (549)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 888 1 77777888999999999999999999999999999853457899999997765 5699876554
No 321
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.25 E-value=0.00034 Score=70.85 Aligned_cols=66 Identities=20% Similarity=0.286 Sum_probs=56.7
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHhhcchheee
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
||| . ||...+.+.|+++|||++++||...+..+..+|+.+.. .+.-+|+|||...++..||..+-+
T Consensus 142 lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l 214 (220)
T TIGR02982 142 LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHM 214 (220)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEE
Confidence 888 1 77777778899999999999999999999999999862 368999999999999999976533
No 322
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.25 E-value=0.00047 Score=71.94 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=55.0
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHH-HHHhcCCCceEEEEecCcchHhhcchheee
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASY-IVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~-l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
||| - ||...+.+.|++||||++++||...+..+.++ +..+. .+.-+|+|||....+..||.++-+
T Consensus 160 LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~~~~~d~i~~l 231 (282)
T cd03291 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILIL 231 (282)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHHHHhCCEEEEE
Confidence 888 1 77777788999999999999999999999875 45665 678999999999999999987544
No 323
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.24 E-value=0.00044 Score=71.84 Aligned_cols=67 Identities=22% Similarity=0.238 Sum_probs=54.3
Q ss_pred hhh--h----hhhccc------cCCCeEEeecccccCChhhHHHHHHHHHHhc-CCCceEEEEecCcchHh-hcchheee
Q psy16118 988 VST--T----IVSHRY------HPAPFFVLDEIDAALDNTNIGKVASYIVTKT-QDSLQTIVISLKEEFFS-HADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~------~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~-~~~~Q~i~iT~~~~~~~-~ad~l~gV 1053 (1070)
||| . +|...+ .+.|+++|||++++||..++..|.++|.++. ..+.-+|+|||....+. .||.++-+
T Consensus 135 LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 214 (258)
T PRK13548 135 LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLL 214 (258)
T ss_pred CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEE
Confidence 888 1 555555 3668999999999999999999999999985 24578999999987664 89987655
Q ss_pred c
Q psy16118 1054 C 1054 (1070)
Q Consensus 1054 t 1054 (1070)
.
T Consensus 215 ~ 215 (258)
T PRK13548 215 H 215 (258)
T ss_pred E
Confidence 4
No 324
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=97.24 E-value=0.00036 Score=81.59 Aligned_cols=67 Identities=19% Similarity=0.312 Sum_probs=55.4
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHH-HHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYI-VTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l-~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| ++|-.-..++|++||||++++||..+...+.+.+ ..+...+.-+|+|||++.++..||..+.+.
T Consensus 471 LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~ 544 (555)
T TIGR01194 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLA 544 (555)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEE
Confidence 998 1555567899999999999999999999998754 344215789999999999999999987654
No 325
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.24 E-value=0.00039 Score=73.35 Aligned_cols=67 Identities=24% Similarity=0.213 Sum_probs=56.4
Q ss_pred hhh-----h-hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST-----T-IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-----t-~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|...+.+.|++||||++++||..++..+..+|.++.. .+..+|+|||+...+ ..||+.+-+.
T Consensus 146 LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~ 220 (286)
T PRK13646 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMK 220 (286)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 888 1 77777778899999999999999999999999999852 368999999998765 6899876554
No 326
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.24 E-value=0.00044 Score=73.02 Aligned_cols=68 Identities=16% Similarity=0.124 Sum_probs=57.0
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheeecc
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gVt~ 1055 (1070)
||| - ||...+.+.|++||||++++||..++..|.++|.++...++-+|+|||+... ...||.++-+..
T Consensus 146 LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~ 220 (287)
T PRK13641 146 LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEH 220 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 888 1 6666677889999999999999999999999999985246789999999886 568998876643
No 327
>KOG4673|consensus
Probab=97.23 E-value=0.52 Score=52.36 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16118 624 EMGNLKAQKEKLSEELREAM 643 (1070)
Q Consensus 624 ~l~~l~~~~~~l~~~~~~l~ 643 (1070)
++.+|...+...+.....+-
T Consensus 613 Ei~~LqrRlqaaE~R~eel~ 632 (961)
T KOG4673|consen 613 EIEDLQRRLQAAERRCEELI 632 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 328
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.22 E-value=0.00051 Score=71.27 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=53.0
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhh-cchhe
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSH-ADSLV 1051 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~-ad~l~ 1051 (1070)
||| . ||...+.+.|+++|||++++||..++..+.++|.++. .+.-+|+|||+...+.. +|.++
T Consensus 147 LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~~~~i~ 216 (250)
T PRK14266 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQQATRVSKYTS 216 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHHhhcCEEE
Confidence 888 1 6666677889999999999999999999999999997 67899999999876555 55443
No 329
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.21 E-value=0.00053 Score=71.14 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=55.7
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| ++|...+.+.+++||||++++||..++..+.++|..+. .+.-+|+|||+...+. .||.++-+.
T Consensus 148 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~ 220 (251)
T PRK14249 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDWTGFLL 220 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEe
Confidence 888 16666677889999999999999999999999999996 6789999999987754 579886554
No 330
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.00045 Score=74.06 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=56.7
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheeecc
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGICP 1055 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gVt~ 1055 (1070)
||| .+|...+...+++|+||++++||..++..+.++|.++.. .+.-+|+|||...++ ..||+++-++.
T Consensus 154 LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~ 229 (326)
T PRK11022 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYA 229 (326)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999 166666677789999999999999999999999999862 357899999998876 68998765543
No 331
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.00048 Score=72.38 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=56.6
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . ||...+.+.|++||||++++||..++..|.++|.++... +.-+|+|||+.... ..||+++-+.
T Consensus 138 LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~ 212 (277)
T PRK13652 138 LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMD 212 (277)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 888 1 777778888999999999999999999999999998622 57899999998875 6899875443
No 332
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00061 Score=73.56 Aligned_cols=65 Identities=17% Similarity=0.310 Sum_probs=57.8
Q ss_pred hhh--h--hhhc--cccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheee
Q psy16118 988 VST--T--IVSH--RYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG--t--~al~--~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
||| - +||. -.+.+|..+|||++.+||..+-+.++.+|-..+ .+.=+|+|||+-.-.+.+|+++.+
T Consensus 475 LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~le~~drIivl 545 (573)
T COG4987 475 LSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRGLERMDRIIVL 545 (573)
T ss_pred CCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccccHhhcCEEEEE
Confidence 999 2 5554 347999999999999999999999999999998 888999999999999999998644
No 333
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.19 E-value=0.00046 Score=73.94 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=56.5
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| - +|...+...+++||||++++||..+...+.++|.++.. .+.-+|+|||....+. .||+++-+.
T Consensus 162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999 1 77777778899999999999999999999999999852 2679999999988875 699876444
No 334
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.19 E-value=0.00054 Score=80.07 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=60.1
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchheeeccCCccc
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLVGICPGSVTI 1060 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~gVt~~~~gv 1060 (1070)
||| .||.....++|+++|||++++||..++..+.++|..+. .+ +|+|||....+. .||.++.+. ..|.
T Consensus 444 LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-viivsHd~~~~~~~~d~i~~l~--~~~~ 518 (552)
T TIGR03719 444 LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GC-AVVISHDRWFLDRIATHILAFE--GDSH 518 (552)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--Ce-EEEEeCCHHHHHHhCCEEEEEE--CCCe
Confidence 898 18888888999999999999999999999999999985 34 999999988654 689876543 2344
Q ss_pred eeeecccc
Q psy16118 1061 SSICFGHY 1068 (1070)
Q Consensus 1061 s~v~~~~~ 1068 (1070)
...+.|.|
T Consensus 519 ~~~~~g~~ 526 (552)
T TIGR03719 519 VEWFEGNY 526 (552)
T ss_pred EEEeCCCH
Confidence 44445544
No 335
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=97.18 E-value=0.00047 Score=74.00 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=55.8
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| . +|...+.+.|+++|||++++||..++..+.++|.++.. .+.-+|+|||.... +..||.++-+.
T Consensus 101 LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~ 175 (325)
T TIGR01187 101 LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMR 175 (325)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 898 1 66667788899999999999999999999999999852 25789999999765 66799876443
No 336
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.18 E-value=0.00048 Score=65.16 Aligned_cols=65 Identities=18% Similarity=0.272 Sum_probs=54.0
Q ss_pred hhh-h---hhhc--cccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchhee
Q psy16118 988 VST-T---IVSH--RYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVG 1052 (1070)
Q Consensus 988 LSG-t---~al~--~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~g 1052 (1070)
||| - .||. .++.-..++|||+++|||+.-++-|.+.+++++..+.-.|||||--+++ ++||+.+.
T Consensus 137 LSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviF 208 (240)
T COG1126 137 LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIF 208 (240)
T ss_pred cCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEE
Confidence 999 1 4444 4456668999999999999999999999999997778999999998876 57888643
No 337
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.18 E-value=0.00047 Score=81.52 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=59.9
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchheeeccCCccc
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLVGICPGSVTI 1060 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~gVt~~~~gv 1060 (1070)
||| . ||.....+++|+||||++++||...+..+.++|..+. . =+|+|||...++. .||.++-+. +|.
T Consensus 431 LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~--g-tvi~vSHd~~~~~~~~d~i~~l~---~G~ 504 (638)
T PRK10636 431 FSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFE--G-ALVVVSHDRHLLRSTTDDLYLVH---DGK 504 (638)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcC--C-eEEEEeCCHHHHHHhCCEEEEEE---CCE
Confidence 999 2 8888888999999999999999999999999999984 4 5999999988764 689877554 343
Q ss_pred eeeecccc
Q psy16118 1061 SSICFGHY 1068 (1070)
Q Consensus 1061 s~v~~~~~ 1068 (1070)
-....|.|
T Consensus 505 i~~~~g~~ 512 (638)
T PRK10636 505 VEPFDGDL 512 (638)
T ss_pred EEEcCCCH
Confidence 22345554
No 338
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.17 E-value=0.00022 Score=70.61 Aligned_cols=33 Identities=24% Similarity=0.590 Sum_probs=30.3
Q ss_pred cccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 5 LQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 5 ~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
|.+|++.||++|.+.+.+ +|++ +++|+||||||
T Consensus 1 ~~~l~l~nfr~~~~~~~l-~~~~g~~~i~G~NGsG 34 (204)
T cd03240 1 IDKLSIRNIRSFHERSEI-EFFSPLTLIVGQNGAG 34 (204)
T ss_pred CcEEEEECcccccCceEE-ecCCCeEEEECCCCCC
Confidence 578999999998888888 8986 99999999999
No 339
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.17 E-value=0.00069 Score=67.71 Aligned_cols=66 Identities=20% Similarity=0.303 Sum_probs=53.9
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHH-HHHHhcCCCceEEEEecCcchHhhcchheee
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVAS-YIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~-~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
||| . +|...+.++++++|||++++||..+...+.. ++..+...+.-+|+|||+...+..||+.+-+
T Consensus 128 lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l 200 (204)
T cd03250 128 LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVL 200 (204)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEE
Confidence 888 1 6666677889999999999999999999988 5666652457899999999998889987544
No 340
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.17 E-value=0.00052 Score=72.53 Aligned_cols=67 Identities=22% Similarity=0.225 Sum_probs=56.2
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| ++|...+...|++||||++++||..++..|.++|..+... +.-+|+|||....+ ..||+.+-+.
T Consensus 146 LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~ 220 (290)
T PRK13634 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMH 220 (290)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1777777888999999999999999999999999998622 57899999997765 6799876553
No 341
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.17 E-value=0.00057 Score=73.50 Aligned_cols=67 Identities=13% Similarity=0.073 Sum_probs=56.3
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| - +|.......+++||||++++||..++..|.++|.++...+.-+|++||....+ ..||+++-+.
T Consensus 173 LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~ 246 (340)
T PRK13536 173 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLE 246 (340)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 888 1 66666778899999999999999999999999999853467899999997765 6799876554
No 342
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.16 E-value=0.00024 Score=73.14 Aligned_cols=34 Identities=62% Similarity=1.213 Sum_probs=29.0
Q ss_pred cccceecccccccCcccccCCCCeEEEEcCCCCc
Q psy16118 5 LQYIEVDNFKSYKGKFSIGPLKKFTAVIGPNGSG 38 (1070)
Q Consensus 5 ~~~L~l~~F~~y~~~~~i~df~~l~lI~G~nGaG 38 (1070)
+.+|+|.||++|.+.++++++.++++|+||||||
T Consensus 1 i~~i~l~nf~~~~~~~~~~~~~~~~~i~G~NGsG 34 (247)
T cd03275 1 LKRLELENFKSYKGRHVIGPFDRFTCIIGPNGSG 34 (247)
T ss_pred CcEEEEECccccCCCeeecCCCCeEEEECCCCCC
Confidence 4689999999999887783444599999999999
No 343
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.16 E-value=0.084 Score=48.11 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHH
Q psy16118 262 HIQKKLASAKKSLVEVRQANEAHNKDIADLETQL 295 (1070)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 295 (1070)
.+...+..++........+|..+...+..++..+
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~el 51 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQKKNQQLEEEL 51 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 344
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.15 E-value=0.00053 Score=73.42 Aligned_cols=68 Identities=22% Similarity=0.150 Sum_probs=57.1
Q ss_pred hhh-----h-hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHh-hcchheeecc
Q psy16118 988 VST-----T-IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFS-HADSLVGICP 1055 (1070)
Q Consensus 988 LSG-----t-~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~-~ad~l~gVt~ 1055 (1070)
||| . +|.......+++|+||++++||..+...+.++|.++.. .+.-+|+|||...++. .||.++-++.
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~ 230 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYL 230 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 899 1 66666778889999999999999999999999999852 2678999999999886 7998765543
No 345
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.14 E-value=0.00051 Score=80.29 Aligned_cols=64 Identities=20% Similarity=0.273 Sum_probs=57.0
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchhee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVG 1052 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~g 1052 (1070)
||| ++|=.-++++|++||||++++||..+...+.+.|..+. ++.=+|+|||+..++..||..|.
T Consensus 459 LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~ 528 (529)
T TIGR02857 459 LSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLALAERADRIVV 528 (529)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHhCCEEEe
Confidence 898 15555568899999999999999999999999999997 78899999999999999998763
No 346
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.14 E-value=0.00048 Score=79.59 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=57.1
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .+|.+...+++++||||++++||..++..+.++|.++...+.-+|+|||....+ ..||..|-+.
T Consensus 404 LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~ 477 (510)
T PRK15439 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMH 477 (510)
T ss_pred CCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 888 277777889999999999999999999999999999863456799999997766 5799877654
No 347
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.13 E-value=0.00066 Score=72.19 Aligned_cols=67 Identities=18% Similarity=0.076 Sum_probs=56.2
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .||.......++++|||++++||..++..|.++|.++...+.-+|++||....+ ..||+++-+.
T Consensus 139 LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~ 212 (306)
T PRK13537 139 LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIE 212 (306)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 888 177777788899999999999999999999999999863467899999998765 6799875443
No 348
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.00063 Score=73.22 Aligned_cols=67 Identities=15% Similarity=0.229 Sum_probs=56.3
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| - +|...+...+++||||++++||......+.++|+++.. .+.-+|+|||....+ ..||+++-+.
T Consensus 159 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~ 233 (330)
T PRK15093 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLY 233 (330)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 999 1 77777778899999999999999999999999999862 257899999998877 6799875443
No 349
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.00054 Score=74.79 Aligned_cols=67 Identities=19% Similarity=0.119 Sum_probs=55.9
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcc-hHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEE-FFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~-~~~~ad~l~gVt 1054 (1070)
||| ++|...+.+.++++|||++++||..++..+..+|+++.. .+.-+|+|||... .+..||.++-+.
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~ 208 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLD 208 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 898 177777788899999999999999999999999999852 2578999999976 567899876443
No 350
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.12 E-value=0.00028 Score=72.93 Aligned_cols=34 Identities=38% Similarity=0.720 Sum_probs=30.8
Q ss_pred cccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 5 LQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 5 ~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
|.+|+|.||++|.+..++++|++ +++|.||||||
T Consensus 1 i~~i~~~nfksy~~~~~~~~~~~~~~~i~GpNGsG 35 (243)
T cd03272 1 IKQVIIQGFKSYKDQTVIEPFSPKHNVVVGRNGSG 35 (243)
T ss_pred CcEEEEeCccCcccCcccccCCCCcEEEECCCCCC
Confidence 46899999999998888767887 99999999999
No 351
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.11 E-value=0.00055 Score=62.45 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=54.9
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheeecc
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gVt~ 1055 (1070)
||| - +|=--+++-|+.+|||.+++||+.=+.-|..++.+++. .+.-+++|||++.- ...||..+.+..
T Consensus 130 LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~ 205 (231)
T COG3840 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDN 205 (231)
T ss_pred cCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeC
Confidence 898 1 55555699999999999999999999999999999974 55679999999764 456777665554
No 352
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.11 E-value=0.0007 Score=65.19 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=54.6
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecC-cchHhhcchheeecc
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLK-EEFFSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~-~~~~~~ad~l~gVt~ 1055 (1070)
||| . ||=.-.-..++++|||.+++||+.....|.++|+++-. =..-+|+|||. +.++..||+.|-+..
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~ 221 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLAD 221 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeC
Confidence 999 2 44444445589999999999999999999999999842 34689999996 778889999876654
No 353
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.10 E-value=0.00059 Score=74.15 Aligned_cols=66 Identities=18% Similarity=0.262 Sum_probs=55.1
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcc-hHhhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEE-FFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~-~~~~ad~l~gV 1053 (1070)
||| .+|...+.+.++++|||++++||..++..+.++|+.+... +.-+|+|||... .+..||.++-+
T Consensus 129 LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l 202 (352)
T PRK11144 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVL 202 (352)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEE
Confidence 898 1777777888999999999999999999999999998622 467999999986 56779986544
No 354
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=97.09 E-value=0.00019 Score=72.14 Aligned_cols=30 Identities=40% Similarity=0.792 Sum_probs=24.9
Q ss_pred cceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 7 YIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 7 ~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
+|+|.|||+|.+. +| +|++ +++|+||||+|
T Consensus 1 ~i~i~nf~~~~~~-~i-~f~~g~~vi~G~Ng~G 31 (202)
T PF13476_consen 1 KIHIKNFRSFKDL-EI-DFSPGLNVIYGPNGSG 31 (202)
T ss_dssp EEEEEEETTEEEE-EE-E--SEEEEEEESTTSS
T ss_pred CEEEEEeCCCcce-EE-EcCCCcEEEECCCCCC
Confidence 5899999999764 57 8976 99999999999
No 355
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.09 E-value=0.00061 Score=78.69 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=56.8
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| .||.....+.|+++|||++++||..++..|.++|..+...+.-+|+|||.... ...||.++-+.
T Consensus 396 LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~ 469 (501)
T PRK10762 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMH 469 (501)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEE
Confidence 999 27777788899999999999999999999999999986345679999999665 46799876554
No 356
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.09 E-value=0.0007 Score=74.04 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=55.8
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..|.++|.++.. .+.-+|+|||.... ...||.++-+.
T Consensus 165 LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~ 239 (400)
T PRK10070 165 LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQ 239 (400)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEE
Confidence 898 177777788899999999999999999999999998852 35689999999765 46799876543
No 357
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.08 E-value=0.00068 Score=73.79 Aligned_cols=67 Identities=19% Similarity=0.212 Sum_probs=55.4
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..+.++|.++... +.-+|+|||+...+ ..||.++-+.
T Consensus 132 LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~ 206 (354)
T TIGR02142 132 LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLE 206 (354)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 888 1777777888999999999999999999999999998622 56799999998754 6799875443
No 358
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.08 E-value=0.00064 Score=67.95 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=51.9
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcch-Hhhcchheeecc
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEF-FSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~-~~~ad~l~gVt~ 1055 (1070)
||| ++|---.+..-++||||.+|+||..++..++++|+++... +.=+|+|||+-.. +.+||+.|-...
T Consensus 139 LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~ 214 (235)
T COG1122 139 LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDD 214 (235)
T ss_pred cCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEEC
Confidence 999 2444444555699999999999999999999999999622 2469999998555 455999764443
No 359
>PRK13409 putative ATPase RIL; Provisional
Probab=97.08 E-value=0.00076 Score=78.39 Aligned_cols=66 Identities=23% Similarity=0.208 Sum_probs=56.8
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gV 1053 (1070)
||| .+|.+...++++++|||++++||..++..+.++|++++. .+.-+|+|||...++ ..||+++-+
T Consensus 454 LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl 527 (590)
T PRK13409 454 LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVF 527 (590)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999 288888899999999999999999999999999999962 256799999998765 479987654
No 360
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.08 E-value=0.0008 Score=66.86 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=53.5
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecC--cchHhhcchheeecc
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLK--EEFFSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~--~~~~~~ad~l~gVt~ 1055 (1070)
||| . +|...+.+.|+++|||++++||...+..|.++|..+... ..-+|++||+ ..+...||..+-+..
T Consensus 119 LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~ 195 (202)
T cd03233 119 ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE 195 (202)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC
Confidence 888 1 777777888999999999999999999999999998622 4566666654 456788998765543
No 361
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.07 E-value=0.0007 Score=72.61 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=56.2
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| - +|...+...+++|+||++++||..++..+.++|.++.. .+.-+|+|||...++. .||+++-+.
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~ 236 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMY 236 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 999 1 66666777899999999999999999999999999862 2578999999988774 799886554
No 362
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.06 E-value=0.00074 Score=72.42 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=55.4
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchH-hhcchheee
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFF-SHADSLVGI 1053 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~-~~ad~l~gV 1053 (1070)
||| - +|-....+.++++|||++++||..+...+.++|+++... +.-+|+|||...++ ..||.++-+
T Consensus 141 LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999 1 666667788999999999999999999999999998622 57899999998876 679987533
No 363
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.06 E-value=0.00073 Score=77.93 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=56.6
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . ||.+...+.|++||||++++||..++..+.++|.+++..+.-+|+|||+...+ ..||.++-+.
T Consensus 135 LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 135 LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILR 208 (491)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999 1 77777888999999999999999999999999999863457899999997755 5789876554
No 364
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.05 E-value=0.00082 Score=70.62 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=51.6
Q ss_pred hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCC-ceEEEEecCcchHhh-cchheeec
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDS-LQTIVISLKEEFFSH-ADSLVGIC 1054 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~-~Q~i~iT~~~~~~~~-ad~l~gVt 1054 (1070)
+|.......+++||||++++||+..+..|.++|+.++..+ .=+|++||...-++. ||+++-+.
T Consensus 147 ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~ 211 (293)
T COG1131 147 IALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILN 211 (293)
T ss_pred HHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEe
Confidence 6766677779999999999999999999999999998323 469999998776666 89665443
No 365
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.05 E-value=0.00074 Score=80.14 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=61.4
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeeccCCccc
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGICPGSVTI 1060 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt~~~~gv 1060 (1070)
||| . ||.....+++++||||++++||..++..+.++|..+. . =+|+|||....+ ..||.++-+.. +|.
T Consensus 441 LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vSHd~~~~~~~~d~i~~l~~--~g~ 515 (635)
T PRK11147 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQ--G-TVLLVSHDRQFVDNTVTECWIFEG--NGK 515 (635)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHHHHHHhcCEEEEEeC--CCe
Confidence 999 2 7777788999999999999999999999999999873 3 499999998766 57898765532 354
Q ss_pred eeeeccccC
Q psy16118 1061 SSICFGHYS 1069 (1070)
Q Consensus 1061 s~v~~~~~~ 1069 (1070)
-..+.|-|+
T Consensus 516 i~~~~g~y~ 524 (635)
T PRK11147 516 IGRYVGGYH 524 (635)
T ss_pred EEEccCCHH
Confidence 456667664
No 366
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.05 E-value=0.00069 Score=79.25 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=56.2
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| .+|-.-++++|+++|||++++||..+...+.+.|..... .+.-+|+|||+..++..||.++-+.
T Consensus 450 LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~ 523 (547)
T PRK10522 450 LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMR 523 (547)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEE
Confidence 888 166666789999999999999999999999888865431 3578999999999999999987654
No 367
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.04 E-value=0.00077 Score=78.01 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=56.6
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| +||...+.+.++++|||++++||..++..+.++|.+++..+.-+|+|||....+ ..||.++-+.
T Consensus 142 LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~ 215 (500)
T TIGR02633 142 YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIR 215 (500)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEe
Confidence 999 277777788899999999999999999999999999863456899999997765 5799877554
No 368
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.04 E-value=0.00063 Score=79.18 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=56.3
Q ss_pred hhh-----h-hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST-----T-IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-----t-~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|...+.+.++++|||++++||..++..|.++|+++... +.-+|+|||+...+ ..||+++-+.
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~ 231 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQ 231 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEE
Confidence 999 1 777777889999999999999999999999999998522 46799999998765 5799886554
No 369
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.03 E-value=0.00077 Score=77.78 Aligned_cols=66 Identities=21% Similarity=0.160 Sum_probs=55.3
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchHh--hcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFFS--HADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~~--~ad~l~gV 1053 (1070)
||| .||.+...+.++++|||++++||..++..+.++|.+++.. .+.+|+|||+...+. +||.++-+
T Consensus 402 LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l 476 (490)
T PRK10938 402 LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFV 476 (490)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEe
Confidence 888 1888888899999999999999999999999999999633 246999999988775 47876543
No 370
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.03 E-value=0.00087 Score=72.32 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=55.7
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcc-hHhhcchheee
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEE-FFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~-~~~~ad~l~gV 1053 (1070)
||| . +|...+.++|+++|||++++||...+..+.++|..+.. .+.-+|+|||... .+..||+++-+
T Consensus 130 LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl 203 (363)
T TIGR01186 130 LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIM 203 (363)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999 1 77777789999999999999999999999999998852 2578999999987 57889987533
No 371
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.00078 Score=77.80 Aligned_cols=67 Identities=16% Similarity=0.153 Sum_probs=56.8
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .||.+...+.|+++|||++++||..++..+.++|..+...+.-+|+|||+...+ ..||.++-+.
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~ 214 (501)
T PRK11288 141 LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFK 214 (501)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999 188888889999999999999999999999999999863456899999997765 6689876544
No 372
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.03 E-value=0.00071 Score=78.28 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=56.7
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .+|.....+.++++|||++++||..++..+.++|..+...+.-+|+|||....+ ..||+++-+.
T Consensus 404 LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~ 477 (500)
T TIGR02633 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIG 477 (500)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 999 177777788899999999999999999999999999863456799999997755 6799987554
No 373
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.02 E-value=0.00082 Score=77.62 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=57.2
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .+|.+...+.+++||||++++||..++..+.++|.++...+.=+|+|||....+ ..||..+-+.
T Consensus 397 LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~ 470 (501)
T PRK11288 397 LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMR 470 (501)
T ss_pred CCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEE
Confidence 898 277777788999999999999999999999999999863456799999997755 7899987665
No 374
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.02 E-value=0.00084 Score=68.71 Aligned_cols=67 Identities=18% Similarity=0.163 Sum_probs=55.6
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| . +|......+|+++|||++++||..++..+..+|+.++.. +.-+|+|||+... +..+|+++-+.
T Consensus 130 LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~ 204 (235)
T cd03299 130 LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIML 204 (235)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 887 2 666667788999999999999999999999999998622 6789999999886 56799875443
No 375
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.01 E-value=0.0009 Score=72.41 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=56.0
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| - +|-..+.+.++++|||++++||..++..+.++|.++... +.-+|+|||.... +..||.++-+.
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~ 211 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMS 211 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999 1 666667788999999999999999999999999998622 5789999999875 78899875443
No 376
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.00 E-value=0.0008 Score=77.65 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=56.1
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .+|.....+.|+++|||++++||..++..+.++|.+++..+.-+|+|||+...+ ..||.++-+.
T Consensus 136 LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~ 209 (490)
T PRK10938 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLA 209 (490)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEE
Confidence 898 177777789999999999999999999999999999863456799999997654 6689876553
No 377
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.00 E-value=0.68 Score=49.61 Aligned_cols=127 Identities=20% Similarity=0.317 Sum_probs=83.4
Q ss_pred HHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhh
Q psy16118 98 EHQLFKLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKR-PSLIK 176 (1070)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 176 (1070)
.|+-|....+..-...+...+..++.+...+...+..+...+..+......+..++..++....+ +..+. ..+..
T Consensus 138 ~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e----~~~~D~~eL~~ 213 (325)
T PF08317_consen 138 MWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE----IESCDQEELEA 213 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhcCHHHHHH
Confidence 45566667777788888888888888888888888888887777777777777776666554443 22232 34555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 177 SKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYER 228 (1070)
Q Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 228 (1070)
++..+......+...+..+..++.++..+...++.+..++.++..++..++.
T Consensus 214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666666666666666666666666655555544
No 378
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.00 E-value=0.001 Score=72.15 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=55.4
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcc-hHhhcchheee
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEE-FFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~-~~~~ad~l~gV 1053 (1070)
||| . +|-..+.+.++++|||++++||..++..+..+|+.+.. .+.-+|+|||... .+..||.++-+
T Consensus 135 LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl 208 (356)
T PRK11650 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVM 208 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 899 1 66666788899999999999999999999999998862 2578999999865 77899987544
No 379
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.00 E-value=0.00089 Score=80.85 Aligned_cols=64 Identities=22% Similarity=0.243 Sum_probs=55.8
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| ++|=.-++++|++||||++++||..+...+.+.|..+. .-+|+|||+..++..||.++.+.
T Consensus 589 LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~---~T~IiItHr~~~i~~~D~Iivl~ 658 (686)
T TIGR03797 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLK---VTRIVIAHRLSTIRNADRIYVLD 658 (686)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhC---CeEEEEecChHHHHcCCEEEEEE
Confidence 888 15555678999999999999999999999999998873 47899999999999999987553
No 380
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.99 E-value=0.0011 Score=77.60 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=60.4
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeeccCCccc
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGICPGSVTI 1060 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt~~~~gv 1060 (1070)
||| . ||.....+++++||||++++||..++..+.++|..+. .+ +|+|||....+ ..||.++-+ ...|.
T Consensus 446 LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~t-vi~vtHd~~~~~~~~d~i~~l--~~~g~ 520 (556)
T PRK11819 446 LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GC-AVVISHDRWFLDRIATHILAF--EGDSQ 520 (556)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--Ce-EEEEECCHHHHHHhCCEEEEE--ECCCe
Confidence 898 2 7777788999999999999999999999999999985 44 99999997755 568986544 32355
Q ss_pred eeeecccc
Q psy16118 1061 SSICFGHY 1068 (1070)
Q Consensus 1061 s~v~~~~~ 1068 (1070)
-.++.|.|
T Consensus 521 ~~~~~g~~ 528 (556)
T PRK11819 521 VEWFEGNF 528 (556)
T ss_pred EEEecCCH
Confidence 55556654
No 381
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.99 E-value=0.00099 Score=80.80 Aligned_cols=65 Identities=14% Similarity=0.241 Sum_probs=55.8
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| - +|=.-+++.|++||||++++||..+...+.+.|..+ ++.-+|+|||+..++..||.++-+.
T Consensus 612 LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~~~D~i~~l~ 682 (708)
T TIGR01193 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQSDKIIVLD 682 (708)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHHHcCCEEEEEE
Confidence 888 1 554456888999999999999999999999999886 4567899999999999999987553
No 382
>KOG0995|consensus
Probab=96.99 E-value=0.83 Score=50.32 Aligned_cols=319 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH
Q psy16118 108 ETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKK 187 (1070)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (1070)
.+-...+.+.....-.+++.+++....+...+. +..+....+..++..+..+...+.....-...+......+...
T Consensus 220 ~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~ 295 (581)
T KOG0995|consen 220 DELKHRLEKYFTSIANEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKK 295 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhhhHHhhhccchhhhhHHHHHHHHHHH
Q psy16118 188 LASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKL 267 (1070)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 267 (1070)
+..+..++...+.+++.++.....++..+..-.=..++++.-.. +...+...+.........+.+.+
T Consensus 296 l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~-------------Er~~l~r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 296 LEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNL-------------ERNKLKRELNKIQSELDRLSKEV 362 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHh--cCCCCCcccChHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy16118 268 ASAKKSLVEVRQANEAHNKDIADLETQLADV-RKRKAEYERQ--SIPGRDINLESAQMTEYTNLKAEATKRAGKILQQLD 344 (1070)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 344 (1070)
-..+..++..-.+++..-.++..+...+.-. .......+.. ......+.....=.-.+..........+.....+..
T Consensus 363 w~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~ 442 (581)
T KOG0995|consen 363 WELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELE 442 (581)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy16118 345 TINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIR-QNEASLKDNKKLKEELNSDVGSSKNRVQEL 423 (1070)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~-~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l 423 (1070)
.++.....+...+.+..+.+..+..++..+..........-.+....-+ +++...+++......+...+....+.+...
T Consensus 443 tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~ 522 (581)
T KOG0995|consen 443 TLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSI 522 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhhhhhH
Q psy16118 424 QKELEQVIEELGDAKTDKHE 443 (1070)
Q Consensus 424 ~~~~~~~~~~l~~~~~~~~~ 443 (1070)
+-++..+......-+.....
T Consensus 523 e~el~~~~~~~~eer~ki~~ 542 (581)
T KOG0995|consen 523 ELELDRMVATGEEERQKIAK 542 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 383
>KOG0979|consensus
Probab=96.97 E-value=1.3 Score=52.27 Aligned_cols=103 Identities=11% Similarity=0.187 Sum_probs=60.9
Q ss_pred HHHHHHHHh---cC-CcceecccccccchhhHHHHHHHHhcc-CCCeEEeCCHHHHHHHHHHHhhcCCCCcce--ecCCC
Q psy16118 452 ELVENFKKA---YS-GVYDRMINMCHPVHKRYNVAITKVLGK-YMEAIVVDSEKTARLCIQYLKDHQLDPETF--LPIDY 524 (1070)
Q Consensus 452 ~~~~~l~~~---~~-~~~g~~~~~~~~~~~~~~~aie~~l~~-~l~~~vv~~~~~~~~~~~~L~~~~~~~~~~--~~~~~ 524 (1070)
+.+.|++.. |. .+++++.--+...+++|+..++..+|- .+..|+|.+..+...+...++...+...+. +|-+.
T Consensus 434 dAy~wlrenr~~FK~~vyeP~~m~l~~k~~~~A~~lEn~v~~~~~~~Fi~~~~eD~~lf~~~i~d~k~~vn~~~~~~~~~ 513 (1072)
T KOG0979|consen 434 DAYQWLRENRSEFKDEVYEPPIMTLNVKNAEFAKYLENFVGFNDLKAFICCDSEDYLLFVKKIKDEKWRVNASEVIPREK 513 (1072)
T ss_pred HHHHHHHHCHHHhcccccCCceEEEecCChHHHHHHHcccCccccceeeeechHHHHHHHHHhhhcceeeeceecccccc
Confidence 455666543 33 377775444445677899999998885 467899999999988888777654443322 22222
Q ss_pred ccCCcchhhhhc-cCCCCCcceeeeeeccCc
Q psy16118 525 LQTKPLKERLRN-IRDPKNVKLLYDVLKYQP 554 (1070)
Q Consensus 525 ~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~ 554 (1070)
..+...++.++. +..-+..+++.+++.++.
T Consensus 514 k~~d~~p~~sre~l~~lGF~gyls~f~~~p~ 544 (1072)
T KOG0979|consen 514 KYADKIPAQSREELKRLGFEGYLSNFIEAPE 544 (1072)
T ss_pred ccccCCCccCHHHHHhcChHHHhhhhhcCcH
Confidence 222111111111 111244567788888873
No 384
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.97 E-value=0.00099 Score=77.01 Aligned_cols=68 Identities=19% Similarity=0.181 Sum_probs=57.2
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeecc
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGICP 1055 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt~ 1055 (1070)
||| .||.....+.++++|||++++||..++..+.++|.+++..+.=+|+|||+...+ ..||.++-+..
T Consensus 141 LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 141 LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRD 215 (510)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999 177777789999999999999999999999999999863456799999997755 67998876543
No 385
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=96.97 E-value=0.00082 Score=78.23 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=57.0
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .||.+.+.+.+++||||++++||..++..+.++|.+++. .+.-+|+|||....+ ..||.++-+.
T Consensus 426 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~ 500 (529)
T PRK15134 426 FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLR 500 (529)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEE
Confidence 899 188888888999999999999999999999999999862 256799999997755 5799887654
No 386
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.95 E-value=0.00092 Score=77.73 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=56.3
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|.....+.++++|||++++||..++..|.++|.++.. .+.=+|+|||....+ ..||.++-+.
T Consensus 169 LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~ 243 (520)
T TIGR03269 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLE 243 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEe
Confidence 999 2 77777788999999999999999999999999999852 256799999998876 5799876543
No 387
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.94 E-value=0.00094 Score=80.51 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=54.7
Q ss_pred hhh--h----hhhccc-cCC-CeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheee
Q psy16118 988 VST--T----IVSHRY-HPA-PFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~-~~~-Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
||| . +|.... .|. ++|||||+.++||...+.++.++|..+...+..+|||||+..++..||.++-+
T Consensus 488 LSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~L 561 (924)
T TIGR00630 488 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDI 561 (924)
T ss_pred CCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEe
Confidence 999 2 444333 333 49999999999999999999999999963567999999999999999998765
No 388
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.93 E-value=0.0012 Score=71.84 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=54.9
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheee
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gV 1053 (1070)
||| - +|-..+...++++|||++++||...+..+..+|+.+.. .+.-+|+|||.... +..||.++-+
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl 218 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVM 218 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 898 1 66656677789999999999999999999999999863 26799999998774 7889987543
No 389
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.93 E-value=0.001 Score=77.11 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=56.5
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| .||.+.+.+.+++||||++++||..++..+.++|..+...+.-+|+|||.... ...||+++-+.
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~ 483 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFC 483 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEE
Confidence 898 17877788899999999999999999999999999985345679999999764 56799876554
No 390
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.93 E-value=0.0011 Score=76.70 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=57.1
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeecc
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGICP 1055 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt~ 1055 (1070)
||| .+|...+.+.++++|||++++||..++..|.++|..+...+.-+|+|||....+ ..||.++-+..
T Consensus 142 LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 142 LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRD 216 (501)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 898 177777889999999999999999999999999999853456799999997654 68998876643
No 391
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=96.92 E-value=0.0013 Score=71.94 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=57.1
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| - +|-..+...|+++|||++++||......+.++|+++...+.-+|++||....+ ..||+++-+.
T Consensus 140 LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~ 213 (402)
T PRK09536 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLA 213 (402)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 888 1 77777788899999999999999999999999999963456899999998877 6799886554
No 392
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.92 E-value=0.0011 Score=76.72 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=56.5
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .||.....+.++++|||++++||..++..+.++|.++...+.=+|+|||+...+ ..||.++-+.
T Consensus 144 LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~ 217 (506)
T PRK13549 144 LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIR 217 (506)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEE
Confidence 999 177777888999999999999999999999999999853456799999997765 5799877554
No 393
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.90 E-value=0.0011 Score=76.58 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=57.5
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheeecc
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gVt~ 1055 (1070)
||| . +|.+...+.++++|||++++||..++..+.++|..+...+.-+|+|||.... ...||+.+-+..
T Consensus 392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~ 466 (491)
T PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSN 466 (491)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEEC
Confidence 999 2 8888888999999999999999999999999999885345679999998664 468999876643
No 394
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.90 E-value=0.0012 Score=76.56 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=56.5
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .||.....+.|+++|||++++||..++..+.++|.+++..+.=+|+|||....+ ..||.++-+.
T Consensus 146 LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~ 219 (510)
T PRK09700 146 LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMK 219 (510)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999 177777889999999999999999999999999999863346799999997765 5799876554
No 395
>KOG0057|consensus
Probab=96.89 E-value=0.0017 Score=70.33 Aligned_cols=67 Identities=19% Similarity=0.310 Sum_probs=60.6
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeecc
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~ 1055 (1070)
||| ++|=.-.+.+|+++|||++++||...-..+.++|.... .+.-+|+|-|+-.|...+|.++++..
T Consensus 488 LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l~ll~~~DkI~~l~n 560 (591)
T KOG0057|consen 488 LSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRLDLLKDFDKIIVLDN 560 (591)
T ss_pred cccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecchhHhcCCEEEEEEC
Confidence 999 25555679999999999999999999999999999966 78899999999999999999998876
No 396
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.88 E-value=0.0012 Score=85.07 Aligned_cols=77 Identities=18% Similarity=0.160 Sum_probs=64.5
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHhhcchheeeccCCccc
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFSHADSLVGICPGSVTI 1060 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gv 1060 (1070)
||| ++|-..++..|++||||++++||..+...+.+.|..+.. .+.=+|+|||+..++..||.++.+..++.|+
T Consensus 580 LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~ 659 (1466)
T PTZ00265 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGS 659 (1466)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccc
Confidence 999 266666788999999999999999999999999999852 3577999999999999999988776655565
Q ss_pred eeee
Q psy16118 1061 SSIC 1064 (1070)
Q Consensus 1061 s~v~ 1064 (1070)
.+.+
T Consensus 660 ~~~~ 663 (1466)
T PTZ00265 660 TVDV 663 (1466)
T ss_pred cccc
Confidence 5544
No 397
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=96.88 E-value=0.00052 Score=69.61 Aligned_cols=33 Identities=36% Similarity=0.920 Sum_probs=28.0
Q ss_pred cccceecccccccCcc-cccCCCC-eEEEEcCCCCc
Q psy16118 5 LQYIEVDNFKSYKGKF-SIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 5 ~~~L~l~~F~~y~~~~-~i~df~~-l~lI~G~nGaG 38 (1070)
|.+|+|.||++|.|.. .+ +|.+ +++|+||||+|
T Consensus 2 I~~l~i~nFr~~~~~~~~~-~~~~~~~~i~G~NGsG 36 (220)
T PF02463_consen 2 IKSLEIENFRNFKGKNAEL-SFSPGLNVIVGPNGSG 36 (220)
T ss_dssp EEEEEEESBTTC-SCEEEE-ETTSSEEEEEESTTSS
T ss_pred ccEEEEcCceEEecCeEEE-ecCCCCEEEEcCCCCC
Confidence 6789999999998544 45 8887 99999999999
No 398
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.88 E-value=0.0012 Score=76.92 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=56.3
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .||.....+.+++||||++++||..++..|.++|.+++. .+.-+|+|||....+ ..||.++-+.
T Consensus 428 LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~ 502 (520)
T TIGR03269 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMR 502 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999 177777788899999999999999999999999998852 256799999997765 5699887554
No 399
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=96.88 E-value=0.0014 Score=70.24 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=38.8
Q ss_pred CeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchH
Q psy16118 1001 PFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFF 1044 (1070)
Q Consensus 1001 Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~ 1044 (1070)
+++++||+|++|.+.....++++|...+ . +.||||.||.|.++
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~~-~~~~QviitTHSp~il 302 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKELS-KKNIQVIITTHSPFIL 302 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHTG-GGSSEEEEEES-GGG-
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhhC-ccCCEEEEeCccchhc
Confidence 8899999999999999999999999887 5 79999999999876
No 400
>KOG0963|consensus
Probab=96.88 E-value=1.1 Score=49.95 Aligned_cols=18 Identities=6% Similarity=0.093 Sum_probs=7.0
Q ss_pred HHHHHHHHHhhHHHHHHH
Q psy16118 406 KEELNSDVGSSKNRVQEL 423 (1070)
Q Consensus 406 ~~~l~~~~~~~~~~~~~l 423 (1070)
....+.-+..++..+...
T Consensus 420 ~~~~ke~i~klE~dl~~~ 437 (629)
T KOG0963|consen 420 ATEQKELIAKLEQDLLKV 437 (629)
T ss_pred HHHHHHHHHHHHhhHhhc
Confidence 333333334444444433
No 401
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.86 E-value=0.0015 Score=77.29 Aligned_cols=76 Identities=20% Similarity=0.218 Sum_probs=61.2
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeeccCCccc
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGICPGSVTI 1060 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt~~~~gv 1060 (1070)
||| . ||.....+.++++|||++++||..++..+.++|..+. .-||+|||....+ ..||.++-+. +|.
T Consensus 150 LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~---~tviivsHd~~~l~~~~d~i~~L~---~G~ 223 (638)
T PRK10636 150 FSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQ---GTLILISHDRDFLDPIVDKIIHIE---QQS 223 (638)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHhcCEEEEEe---CCE
Confidence 999 2 7777778889999999999999999999999999873 3699999998765 5789877554 354
Q ss_pred eeeeccccC
Q psy16118 1061 SSICFGHYS 1069 (1070)
Q Consensus 1061 s~v~~~~~~ 1069 (1070)
-..+.|.|+
T Consensus 224 i~~~~g~~~ 232 (638)
T PRK10636 224 LFEYTGNYS 232 (638)
T ss_pred EEEecCCHH
Confidence 444678775
No 402
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=96.85 E-value=0.0015 Score=76.34 Aligned_cols=64 Identities=13% Similarity=0.196 Sum_probs=54.3
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . ||...+.+.|+++|||++++||..++..+.++|.++. . =+|+|||+...+ ..||.++-+.
T Consensus 162 LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~-tvIiisHd~~~~~~~~d~v~~l~ 232 (552)
T TIGR03719 162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--G-TVVAVTHDRYFLDNVAGWILELD 232 (552)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--C-eEEEEeCCHHHHHhhcCeEEEEE
Confidence 999 2 7777788999999999999999999999999999884 3 599999998765 4688876555
No 403
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.84 E-value=0.0012 Score=79.75 Aligned_cols=64 Identities=19% Similarity=0.188 Sum_probs=53.5
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| - +|=.-++++|++||||++++||..+...+.+ .. .. ++.-+|+|||+..++..||..|-+.
T Consensus 618 LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~-~~-~~~TvIiItHrl~~i~~aD~IivL~ 687 (711)
T TIGR00958 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR-SR-ASRTVLLIAHRLSTVERADQILVLK 687 (711)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-cc-CCCeEEEEeccHHHHHhCCEEEEEE
Confidence 998 1 5555568999999999999999999888887 32 33 6789999999999999999987654
No 404
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.83 E-value=0.0014 Score=75.86 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=56.0
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| .+|.....+++++||||++++||..++..+.++|..+...+.-+|+|||.... ...||..|-+.
T Consensus 406 LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~ 479 (506)
T PRK13549 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMH 479 (506)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 999 17777778889999999999999999999999999986345679999999765 56799876443
No 405
>PLN03211 ABC transporter G-25; Provisional
Probab=96.83 E-value=0.0016 Score=76.88 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=57.9
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc--hHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE--FFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~--~~~~ad~l~gVt 1054 (1070)
||| ++|.....+.|+++|||++++||..++..+.++|++++..+.-+|++||++. ++..+|.++-+.
T Consensus 207 LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~ 281 (659)
T PLN03211 207 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLS 281 (659)
T ss_pred cChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEec
Confidence 888 2777777889999999999999999999999999999744678999999986 588999987554
No 406
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.81 E-value=0.0017 Score=83.70 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=57.9
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhc-CCCceEEEEecCcchHhhcchheeecc
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKT-QDSLQTIVISLKEEFFSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~-~~~~Q~i~iT~~~~~~~~ad~l~gVt~ 1055 (1070)
||| - +|=..++.+|++||||.+++||..+...+.+.|..+. .++.=+|+||||..++..||.+|-+..
T Consensus 1359 LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNN 1433 (1466)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeC
Confidence 888 1 4444568899999999999999999999999999883 146789999999999999999986654
No 407
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.77 E-value=0.0018 Score=70.17 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=54.9
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC--CceEEEEecCcch-Hhhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD--SLQTIVISLKEEF-FSHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~--~~Q~i~iT~~~~~-~~~ad~l~gV 1053 (1070)
||| ++|-..+.+.++++|||.+++||...+..+..+|+.+... +.-+|+|||.... +..||.++-+
T Consensus 138 LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl 212 (362)
T TIGR03258 138 LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIM 212 (362)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999 1666667788999999999999999999999999998622 5689999999764 7889987533
No 408
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=96.76 E-value=0.0017 Score=82.78 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=55.4
Q ss_pred hhh--h----hhhccccCC--CeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYHPA--PFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~~~--Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . +|-....+. ++|||||+.++||...+.++.++|+.+...+..+|+|||+..++..||.++-+-
T Consensus 477 LSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~vi~~aDrVi~L~ 551 (1809)
T PRK00635 477 LSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQMISLADRIIDIG 551 (1809)
T ss_pred CCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhCCEEEEEc
Confidence 999 2 444433333 699999999999999999999999999534678999999999999999987653
No 409
>PLN03073 ABC transporter F family; Provisional
Probab=96.76 E-value=0.0019 Score=76.75 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=54.4
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| . ||.....+.|++||||++++||..++..+...|..+. . =+|+|||....+. .||.+|-+.
T Consensus 628 LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~--g-tvIivSHd~~~i~~~~drv~~l~ 698 (718)
T PLN03073 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQ--G-GVLMVSHDEHLISGSVDELWVVS 698 (718)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcC--C-EEEEEECCHHHHHHhCCEEEEEE
Confidence 999 2 7777788999999999999999999999999998763 3 5999999987765 689887554
No 410
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.75 E-value=0.0018 Score=78.76 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=55.4
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| - +|=.-++++|+++|||++++||..+...+.+.|.. .+.-+|+|||+..++..||..+-+.
T Consensus 616 LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~ 685 (710)
T TIGR03796 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLE 685 (710)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEe
Confidence 899 1 55556789999999999999999999999999975 3578999999999999999987553
No 411
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.74 E-value=0.0018 Score=70.00 Aligned_cols=64 Identities=23% Similarity=0.241 Sum_probs=54.0
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchhe
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLV 1051 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~ 1051 (1070)
||| . +|-..+...++++|||++++||...+..+..+|+++.. .+.-+|+|||.... +..||.++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~ 206 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIV 206 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE
Confidence 999 1 66666678899999999999999999999999998852 25789999999874 78899764
No 412
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.74 E-value=0.002 Score=69.90 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=55.2
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheee
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGI 1053 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gV 1053 (1070)
||| . +|...+.+.++++|||++++||...+..|.++|.++.. .+.-+|+|||.... +..||+++-+
T Consensus 165 LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl 238 (382)
T TIGR03415 165 LSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIM 238 (382)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 898 2 66666778899999999999999999999999999862 25789999999876 6889987544
No 413
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.71 E-value=1.2 Score=47.95 Aligned_cols=21 Identities=5% Similarity=0.172 Sum_probs=12.9
Q ss_pred HHHHHHHhcCCCceEEEEecCcchH
Q psy16118 1020 VASYIVTKTQDSLQTIVISLKEEFF 1044 (1070)
Q Consensus 1020 ~~~~l~~~~~~~~Q~i~iT~~~~~~ 1044 (1070)
|+..|..++ ++|||-|=.+-|
T Consensus 344 yA~~l~GYG----~vvIldhG~gy~ 364 (420)
T COG4942 344 YADWLRGYG----LVVILDHGGGYH 364 (420)
T ss_pred echhhccCc----eEEEEEcCCccE
Confidence 455566555 777777765444
No 414
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=96.69 E-value=0.002 Score=76.49 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=57.6
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeecc
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~ 1055 (1070)
||| . +|-.-+.+.++++|||++++||..++..+.++|..+...+..+|+|||+...+..||..+-+..
T Consensus 145 LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~ 218 (648)
T PRK10535 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRD 218 (648)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEEC
Confidence 788 1 5555667779999999999999999999999999985346899999999999999998765543
No 415
>PRK13409 putative ATPase RIL; Provisional
Probab=96.69 E-value=0.0028 Score=73.75 Aligned_cols=65 Identities=22% Similarity=0.193 Sum_probs=54.7
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheee
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGI 1053 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gV 1053 (1070)
||| . +|......+++++|||++++||...+..+.++|+.+. .+.-+|+|||+...+ ..||..+-+
T Consensus 213 LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~-~g~tvIivsHd~~~l~~~~D~v~vl 284 (590)
T PRK13409 213 LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA-EGKYVLVVEHDLAVLDYLADNVHIA 284 (590)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 888 1 6666678889999999999999999999999999997 477899999997765 568876433
No 416
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.69 E-value=1.1 Score=47.24 Aligned_cols=127 Identities=19% Similarity=0.249 Sum_probs=84.8
Q ss_pred HHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhh
Q psy16118 98 EHQLFKLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKR-PSLIK 176 (1070)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 176 (1070)
.|+-|....++.-...+...+..++.+...+.+....+..-+..+......+..++..+++.... +..+. ..+..
T Consensus 133 ~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e----~~~~d~~eL~~ 208 (312)
T smart00787 133 MWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDE----LEDCDPTELDR 208 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHhCCHHHHHH
Confidence 45666667777888888888888888888888888888777777777776666666665443333 33333 34455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 177 SKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYER 228 (1070)
Q Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 228 (1070)
++.++......+......+..++.++..+...++....+..++..++..++.
T Consensus 209 lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 209 AKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666666666666666666666666666655555
No 417
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.69 E-value=0.0024 Score=74.74 Aligned_cols=64 Identities=13% Similarity=0.235 Sum_probs=54.5
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . ||.....++|+++|||++++||..++..+.++|+.+. . =+|+|||+...+ ..||.++-+.
T Consensus 164 LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~-tviiisHd~~~~~~~~d~i~~l~ 234 (556)
T PRK11819 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--G-TVVAVTHDRYFLDNVAGWILELD 234 (556)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--C-eEEEEeCCHHHHHhhcCeEEEEe
Confidence 999 2 7777788999999999999999999999999999884 3 499999998766 5688876555
No 418
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=96.69 E-value=0.0021 Score=76.37 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=55.5
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
||| .+|-..+.+.|++||||++++||..+...+.++|.+. +.-+|+|||+..+...||..+-+
T Consensus 583 LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~---~~tvI~isH~~~~~~~~d~il~l 651 (659)
T TIGR00954 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF---GITLFSVSHRKSLWKYHEYLLYM 651 (659)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEeCchHHHHhCCEEEEE
Confidence 898 1777778899999999999999999999999999764 46799999999999999998744
No 419
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.68 E-value=0.0023 Score=75.98 Aligned_cols=64 Identities=22% Similarity=0.250 Sum_probs=54.9
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . ||.....+.++++|||++++||..++..+.++|..+. . =+|+|||....+ ..||.++-+.
T Consensus 157 LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~-tvlivsHd~~~l~~~~d~i~~L~ 227 (635)
T PRK11147 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--G-SIIFISHDRSFIRNMATRIVDLD 227 (635)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--C-EEEEEeCCHHHHHHhcCeEEEEE
Confidence 999 2 7777778899999999999999999999999999884 3 699999998766 5689887665
No 420
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.68 E-value=0.0033 Score=56.62 Aligned_cols=67 Identities=25% Similarity=0.457 Sum_probs=53.2
Q ss_pred hhh--h--hhhc---cccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheeecc
Q psy16118 988 VST--T--IVSH---RYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG--t--~al~---~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gVt~ 1055 (1070)
||| . .||- ++.|. +.+|||++++||..|.+.+-.||-.+.+ ...=++-|||.+.- |.+||..+-|+.
T Consensus 134 lSGGE~QriAliR~Lq~~P~-ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~ 209 (223)
T COG4619 134 LSGGEKQRIALIRNLQFMPK-ILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQP 209 (223)
T ss_pred ccchHHHHHHHHHHhhcCCc-eEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEecc
Confidence 999 2 4443 33443 7889999999999999999999988874 45668889998766 999999887765
No 421
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.68 E-value=1.9 Score=49.85 Aligned_cols=17 Identities=24% Similarity=0.175 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16118 913 HAKENLMKTNEEFENAR 929 (1070)
Q Consensus 913 ~~~~~~~~l~~~~~~l~ 929 (1070)
.+...+..|...+++..
T Consensus 558 ~lh~~c~~Li~~v~~tG 574 (594)
T PF05667_consen 558 SLHENCSQLIETVEETG 574 (594)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33334444444444333
No 422
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=96.67 E-value=0.001 Score=66.29 Aligned_cols=34 Identities=32% Similarity=0.607 Sum_probs=29.2
Q ss_pred CccccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
+.+.+|+|.||++| +...+ +|.+ +|+|+||||||
T Consensus 1 ~~i~~i~i~nfr~~-~~~~i-~~~~g~n~i~G~NgsG 35 (213)
T cd03277 1 GSIVRIKLENFVTY-DETEF-RPGPSLNMIIGPNGSG 35 (213)
T ss_pred CeeEEEEEeCCCCc-ceeEE-ecCCCeEEEECCCCCC
Confidence 35789999999999 45667 7775 99999999999
No 423
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.66 E-value=0.0022 Score=75.92 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=56.1
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .+|.......+++||||++++||..+...+.++|.++... +.-+|+|||....+ ..||+++-+.
T Consensus 464 LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~ 538 (623)
T PRK10261 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMY 538 (623)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999 1777778889999999999999999999999999998522 56799999997755 5799876544
No 424
>PRK14079 recF recombination protein F; Provisional
Probab=96.65 E-value=0.00093 Score=72.24 Aligned_cols=51 Identities=25% Similarity=0.281 Sum_probs=37.1
Q ss_pred cCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 998 HPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 998 ~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
...|+++||||.+.||...+..+.++|.... |++|.|- ..-..+|..+.|.
T Consensus 289 ~~~pilLlDd~~seLD~~~~~~l~~~l~~~~----q~~it~t--~~~~~~~~~~~~~ 339 (349)
T PRK14079 289 GEAPVLLVDDFTAELDPRRRGALLALAASLP----QAIVAGT--EAPPGAALTLRIE 339 (349)
T ss_pred CCCCEEEEcccchhcCHHHHHHHHHHHhcCC----cEEEEcC--CCCCCCceEEEEe
Confidence 6789999999999999999999988885442 6655443 2445556666664
No 425
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.64 E-value=0.0024 Score=68.97 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=55.4
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| - +|-..+...++++|||++++||...+..+...|+.+.. .+.-+|+|||.... +..||.++-+.
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~ 211 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMN 211 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 999 1 66666778889999999999999999999999998862 25789999998765 68899875443
No 426
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=96.64 E-value=0.0031 Score=76.32 Aligned_cols=66 Identities=17% Similarity=0.276 Sum_probs=54.9
Q ss_pred hhh--h----hhhccccCC---CeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheee
Q psy16118 988 VST--T----IVSHRYHPA---PFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~~~~---Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
||| . ||.....+. +++||||++++||...+..+.++|..+...+.-+|+|||+..++..||.++-+
T Consensus 831 LSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~L 905 (943)
T PRK00349 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDL 905 (943)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEe
Confidence 888 1 555545554 89999999999999999999999999853457899999999999999976655
No 427
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.0034 Score=61.54 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=56.8
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecC-cchHhhcchheeeccC
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLK-EEFFSHADSLVGICPG 1056 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~-~~~~~~ad~l~gVt~~ 1056 (1070)
||| ++|=......+..+|||.++|||+-.+..+-+.|..+-. ...=+++|||+ .+-.-.||++|-.+.+
T Consensus 131 LSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 131 LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred cChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999 155555567779999999999999999999999988863 44789999997 6777889999877764
No 428
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.62 E-value=0.0027 Score=73.96 Aligned_cols=75 Identities=19% Similarity=0.277 Sum_probs=57.7
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeeccCCccc
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGICPGSVTI 1060 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt~~~~gv 1060 (1070)
||| . ||.....+.|+++|||++++||..++..+.++|.+. +.-+|+|||....+ ..||.++-+. +|.
T Consensus 156 LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~d~i~~l~---~g~ 229 (530)
T PRK15064 156 VAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNER---NSTMIIISHDRHFLNSVCTHMADLD---YGE 229 (530)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcceEEEEe---CCE
Confidence 898 1 777777888999999999999999999999999753 35699999998764 6789876444 243
Q ss_pred eeeecccc
Q psy16118 1061 SSICFGHY 1068 (1070)
Q Consensus 1061 s~v~~~~~ 1068 (1070)
-.+..|+|
T Consensus 230 i~~~~g~~ 237 (530)
T PRK15064 230 LRVYPGNY 237 (530)
T ss_pred EEEecCCH
Confidence 22345655
No 429
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.61 E-value=0.0027 Score=73.95 Aligned_cols=64 Identities=20% Similarity=0.230 Sum_probs=55.0
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| .||.....++++++|||++++||..++..+.++|..+. . =+|+|||....+. .||.++-+.
T Consensus 439 LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vsHd~~~~~~~~d~i~~l~ 509 (530)
T PRK15064 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYE--G-TLIFVSHDREFVSSLATRIIEIT 509 (530)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCC--C-EEEEEeCCHHHHHHhCCEEEEEE
Confidence 898 17777888999999999999999999999999999884 3 5999999988654 689887554
No 430
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=96.60 E-value=0.0012 Score=65.12 Aligned_cols=32 Identities=28% Similarity=0.551 Sum_probs=27.6
Q ss_pred cccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 5 LQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 5 ~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
+.+|+|.||++|.+ ..+ +|.+ +++|+||||+|
T Consensus 1 i~~l~l~nfr~~~~-~~l-~f~~gl~~i~G~NGsG 33 (198)
T cd03276 1 IESITLKNFMCHRH-LQI-EFGPRVNFIVGNNGSG 33 (198)
T ss_pred CeEEEEeCccceee-eEE-ecCCCeEEEECCCCCc
Confidence 46899999999964 456 7876 99999999999
No 431
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.59 E-value=0.004 Score=55.42 Aligned_cols=69 Identities=20% Similarity=0.207 Sum_probs=50.4
Q ss_pred hhh-h---hhhcc--ccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchHhhcchheeeccCCcc
Q psy16118 988 VST-T---IVSHR--YHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFFSHADSLVGICPGSVT 1059 (1070)
Q Consensus 988 LSG-t---~al~~--~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~~~ad~l~gVt~~~~g 1059 (1070)
||| - .||.+ .+.....+|||..|+||+.-..-++++|+++++. -+|+ ||||--.+....-..+ |+|+ .|
T Consensus 142 lsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqv-ivthev~va~k~as~v-vyme-~g 217 (242)
T COG4161 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQV-IVTHEVEVARKTASRV-VYME-NG 217 (242)
T ss_pred cccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEE-EEEeehhHHHhhhhhe-Eeee-cC
Confidence 888 1 44443 3444578999999999999999999999999853 3565 5788877776655543 7774 34
No 432
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0034 Score=58.11 Aligned_cols=57 Identities=18% Similarity=0.298 Sum_probs=48.4
Q ss_pred hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcc
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHAD 1048 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad 1048 (1070)
+|=.-+.|+|.-||||++++||..++.+|..++...+..+-=+|..||.+--...|.
T Consensus 141 lArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~a~ 197 (209)
T COG4133 141 LARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIASAQ 197 (209)
T ss_pred HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCccc
Confidence 444456899999999999999999999999999999866678889999987665544
No 433
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.58 E-value=1.1 Score=45.97 Aligned_cols=70 Identities=20% Similarity=0.289 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy16118 365 VQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEEL 434 (1070)
Q Consensus 365 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l 434 (1070)
...+.++..+..++-.++.++..+-.+-.++...+......-..+..++..++.+......-+...+.++
T Consensus 230 ~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEEl 299 (306)
T PF04849_consen 230 RRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEEL 299 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444444444444444444444333
No 434
>KOG4673|consensus
Probab=96.56 E-value=1.8 Score=48.33 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy16118 286 KDIADLETQLADVRKRKAEYE 306 (1070)
Q Consensus 286 ~~~~~l~~~l~~~~~~~~~~~ 306 (1070)
.++.+|...++....+..++-
T Consensus 612 ~Ei~~LqrRlqaaE~R~eel~ 632 (961)
T KOG4673|consen 612 GEIEDLQRRLQAAERRCEELI 632 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 435
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.55 E-value=0.0028 Score=74.06 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=47.4
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCc
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKE 1041 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~ 1041 (1070)
||| - +|=.-++++|++||||++++||..+...+.+.|..+. ++.=+|+|||+.
T Consensus 471 LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 471 LSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 999 1 5555679999999999999999999999999999987 888999999984
No 436
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.54 E-value=0.0031 Score=64.37 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=54.1
Q ss_pred hhh-----h-hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcc-hHhhcchhe
Q psy16118 988 VST-----T-IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEE-FFSHADSLV 1051 (1070)
Q Consensus 988 LSG-----t-~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~-~~~~ad~l~ 1051 (1070)
||| . +|+...-...+.|-||++.|||..+-..+.++|+++.. .++=+|+|||.-+ +.+.||+++
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~ 225 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVA 225 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEE
Confidence 999 1 66655556669999999999999999999999999974 5789999999987 678899765
No 437
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.52 E-value=0.0029 Score=74.89 Aligned_cols=67 Identities=21% Similarity=0.208 Sum_probs=56.0
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . ||...+...+++||||++++||..+...+.++|+.+... +.=+|+|||+...+ ..||+++-+.
T Consensus 169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 999 1 777777888899999999999999999999999998622 56799999997765 6799876544
No 438
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=96.50 E-value=0.003 Score=76.49 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=53.9
Q ss_pred hhh--h----hhhccc-cCC-CeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheee
Q psy16118 988 VST--T----IVSHRY-HPA-PFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~-~~~-Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
||| . +|-... .|. ++|||||+.++||...+.++.++|..+...+.-+|||||+...+..||.++-+
T Consensus 490 LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~L 563 (943)
T PRK00349 490 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDI 563 (943)
T ss_pred CCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEe
Confidence 999 2 333332 343 48999999999999999999999999863467899999999999999987644
No 439
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=96.50 E-value=0.0046 Score=65.28 Aligned_cols=82 Identities=20% Similarity=0.156 Sum_probs=64.9
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccce
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTIS 1061 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs 1061 (1070)
||| - +|..-.+.+-||+|||+.++||-.-+-.+++.|++++.++.=+|||-|.-.+..+--=.+.|.-++||+=
T Consensus 214 LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG~pg~Y 293 (591)
T COG1245 214 LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGEPGVY 293 (591)
T ss_pred cCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEecCCccc
Confidence 888 1 4444568999999999999999999999999999998446899999999888765444455666788876
Q ss_pred eeeccccC
Q psy16118 1062 SICFGHYS 1069 (1070)
Q Consensus 1062 ~v~~~~~~ 1069 (1070)
-||...||
T Consensus 294 Gvvs~p~s 301 (591)
T COG1245 294 GVVSKPKS 301 (591)
T ss_pred eEeccchH
Confidence 66655544
No 440
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.50 E-value=0.0036 Score=68.31 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=54.4
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheee
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gV 1053 (1070)
||| . +|-..+.+.++++|||.+++||...+..+...|..+.. .+.-+|+|||.... +..||+++-+
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl 223 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIM 223 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 999 2 66666777889999999999999999999988887752 25789999999875 7889987533
No 441
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.49 E-value=0.0046 Score=74.78 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=54.8
Q ss_pred hhh--h----hhhcccc---CCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheee
Q psy16118 988 VST--T----IVSHRYH---PAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG--t----~al~~~~---~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
||| . ||..... +.+++||||+.++||..++..+.++|..+...+.-+|||||+..++..||.++.+
T Consensus 829 LSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~L 903 (924)
T TIGR00630 829 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDL 903 (924)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEe
Confidence 888 1 4444443 4679999999999999999999999999853567999999999999999976654
No 442
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=96.47 E-value=0.0035 Score=81.60 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=55.7
Q ss_pred hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheee
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
+|-...+++|++||||.+++||..+-..+.+.|++.. +++=+|+||||..++..+|.++-+
T Consensus 1364 LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~~DrIlvL 1424 (1490)
T TIGR01271 1364 LARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEALLECQQFLVI 1424 (1490)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEE
Confidence 5555679999999999999999999999999999987 889999999999999999998644
No 443
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=96.45 E-value=0.0032 Score=74.47 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=57.5
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc--hHhhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE--FFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~--~~~~ad~l~gV 1053 (1070)
||| ++|...+.+.|+++|||++++||..+...+++.|+.++..+.-+|++||++. ++..+|.++-+
T Consensus 167 LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll 240 (617)
T TIGR00955 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILM 240 (617)
T ss_pred cCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEe
Confidence 888 3788788899999999999999999999999999999734678999999985 78999998544
No 444
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.44 E-value=1.2 Score=44.84 Aligned_cols=6 Identities=33% Similarity=0.601 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy16118 184 IQKKLA 189 (1070)
Q Consensus 184 ~~~~~~ 189 (1070)
+..+++
T Consensus 75 L~SkLe 80 (305)
T PF14915_consen 75 LNSKLE 80 (305)
T ss_pred HhHHHH
Confidence 333333
No 445
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.44 E-value=0.027 Score=61.27 Aligned_cols=43 Identities=19% Similarity=0.391 Sum_probs=37.5
Q ss_pred CCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH
Q psy16118 999 PAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF 1044 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~ 1044 (1070)
..|+++||||.+.||...+..+.++|... +.|+||+||.+..+
T Consensus 302 ~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~~~ 344 (365)
T TIGR00611 302 EYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLDHL 344 (365)
T ss_pred CCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChhhc
Confidence 68999999999999999999999999754 35999999987543
No 446
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.43 E-value=0.0042 Score=58.73 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=47.6
Q ss_pred hhh-h---hhhccc--cCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcch
Q psy16118 988 VST-T---IVSHRY--HPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADS 1049 (1070)
Q Consensus 988 LSG-t---~al~~~--~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~ 1049 (1070)
||| - ++|.+. .+.-.++|||+.+|||+....++=++|.++. ...-+|||||+.+= ..++|.
T Consensus 150 LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~ 217 (253)
T COG1117 150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDY 217 (253)
T ss_pred CChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHh
Confidence 788 1 444432 3344899999999999999999999999997 89999999999544 445554
No 447
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.42 E-value=0.0039 Score=60.55 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=50.2
Q ss_pred hhh---h-hhhccc--cCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHh-hcchhe
Q psy16118 988 VST---T-IVSHRY--HPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFS-HADSLV 1051 (1070)
Q Consensus 988 LSG---t-~al~~~--~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~-~ad~l~ 1051 (1070)
||| - +||.+. -...++||||+.++||..+-.-+.++|.++.. .+.=||+|||+-.++. +||+++
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~ 213 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIA 213 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhhee
Confidence 999 2 555543 33348999999999999999999999999962 3458999999977765 578764
No 448
>PRK00064 recF recombination protein F; Reviewed
Probab=96.42 E-value=0.046 Score=59.68 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=38.3
Q ss_pred ccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH
Q psy16118 997 YHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF 1044 (1070)
Q Consensus 997 ~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~ 1044 (1070)
..+.|+++||||.+.||..++..+.++|..+ ..|+|++||....+
T Consensus 298 ~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~~ 342 (361)
T PRK00064 298 TGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLEDL 342 (361)
T ss_pred hCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhhh
Confidence 4688999999999999999999999998754 35999999986543
No 449
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.40 E-value=0.0051 Score=59.85 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=46.4
Q ss_pred hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC--CCceEEEEecCcchHh
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ--DSLQTIVISLKEEFFS 1045 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~--~~~Q~i~iT~~~~~~~ 1045 (1070)
||=..++.-+..||||..++||.-|+..+.++|.+.+. +..++|+|||+.+-+.
T Consensus 182 iaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~ 237 (257)
T COG1119 182 IARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIP 237 (257)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcc
Confidence 77666777779999999999999999999999999975 3789999999965443
No 450
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.39 E-value=0.0049 Score=61.75 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=55.8
Q ss_pred hhh-----h-hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCc-chHhhcchheee
Q psy16118 988 VST-----T-IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKE-EFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG-----t-~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~-~~~~~ad~l~gV 1053 (1070)
||| . +|..-+..+|+.+|||+.++||-.|--.++++|+++.. .+.=+|+|+|.. .-+.+||.++-+
T Consensus 139 LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~l 212 (258)
T COG1120 139 LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILL 212 (258)
T ss_pred cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 999 2 77777889999999999999999999999999999973 347799999987 667788876543
No 451
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.38 E-value=1.7 Score=45.89 Aligned_cols=95 Identities=15% Similarity=0.233 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16118 336 AGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGS 415 (1070)
Q Consensus 336 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~ 415 (1070)
+..+...-..++..+.-....++.+...+.....-....+.+++.....+..++.+........+..+..+-.+-.+...
T Consensus 204 ~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~ 283 (309)
T PF09728_consen 204 VQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQK 283 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33344444555555555555556665555555555555555555555555555555555555544444444444444444
Q ss_pred hHHHHHHHHHHHHHH
Q psy16118 416 SKNRVQELQKELEQV 430 (1070)
Q Consensus 416 ~~~~~~~l~~~~~~~ 430 (1070)
....+..+...+..+
T Consensus 284 ~~~~~~~~~~k~~kL 298 (309)
T PF09728_consen 284 LEKELEKLKKKIEKL 298 (309)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444443333
No 452
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.37 E-value=0.0056 Score=55.39 Aligned_cols=67 Identities=15% Similarity=0.279 Sum_probs=55.2
Q ss_pred hhh--h--hhhcc-ccCCC-eEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T--IVSHR-YHPAP-FFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t--~al~~-~~~~P-f~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| - .||.+ +.++| +.+=||++.+||...-.+++++|=.+-+ ..+-.|+|||.+.+...|++.+.+.
T Consensus 147 LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~ 220 (228)
T COG4181 147 LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLR 220 (228)
T ss_pred cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeee
Confidence 898 2 66654 36777 5677999999999999999999977643 6789999999999999999976543
No 453
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=96.36 E-value=0.0056 Score=57.15 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=51.3
Q ss_pred hhh-----h-hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecC-cchHhhcchheeecc
Q psy16118 988 VST-----T-IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLK-EEFFSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG-----t-~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~-~~~~~~ad~l~gVt~ 1055 (1070)
||| . +|-.......|++|||++|++|+-.+.-+-++++.+...+.=++|.-|| .+|+..+|+-|=|+.
T Consensus 140 LSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~ 214 (243)
T COG1137 140 LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISD 214 (243)
T ss_pred cccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEec
Confidence 888 1 3333333445999999999999988777777777775345566777786 899999999998876
No 454
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.35 E-value=0.0066 Score=58.62 Aligned_cols=54 Identities=22% Similarity=0.262 Sum_probs=44.5
Q ss_pred ccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCc-chHhhcchh
Q psy16118 997 YHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKE-EFFSHADSL 1050 (1070)
Q Consensus 997 ~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~-~~~~~ad~l 1050 (1070)
....-+.||||++++||++|++.+-+++.++...+.=+|+-||+. .+=+.||.+
T Consensus 146 iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~l 200 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRL 200 (300)
T ss_pred hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhh
Confidence 445559999999999999999999999999965788999999984 344456664
No 455
>PTZ00243 ABC transporter; Provisional
Probab=96.34 E-value=0.0048 Score=80.52 Aligned_cols=61 Identities=13% Similarity=0.240 Sum_probs=53.5
Q ss_pred hhhcccc-CCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheee
Q psy16118 992 IVSHRYH-PAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 992 ~al~~~~-~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
+|=.-++ |+|++||||.+++||..+-..+.+.|.... +++=+|+||||..|+..+|.++-+
T Consensus 1456 LARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVL 1517 (1560)
T PTZ00243 1456 MARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHTVAQYDKIIVM 1517 (1560)
T ss_pred HHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHHHHhCCEEEEE
Confidence 4434456 699999999999999999999999999987 788999999999999999998644
No 456
>PLN03073 ABC transporter F family; Provisional
Probab=96.32 E-value=0.0058 Score=72.69 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=58.3
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeeccCCccc
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGICPGSVTI 1060 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt~~~~gv 1060 (1070)
||| . +|...+.+.++++|||++++||..++..+.++|..+. .-+|||||....+ ..||.++-+.. |.
T Consensus 345 LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~---~tviivsHd~~~l~~~~d~i~~l~~---g~ 418 (718)
T PLN03073 345 FSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWP---KTFIVVSHAREFLNTVVTDILHLHG---QK 418 (718)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcC---CEEEEEECCHHHHHHhCCEEEEEEC---CE
Confidence 999 2 6666677889999999999999999999999999873 4699999998876 45898866552 43
Q ss_pred eeeecccc
Q psy16118 1061 SSICFGHY 1068 (1070)
Q Consensus 1061 s~v~~~~~ 1068 (1070)
-.+..|.|
T Consensus 419 i~~~~g~~ 426 (718)
T PLN03073 419 LVTYKGDY 426 (718)
T ss_pred EEEeCCCH
Confidence 33344554
No 457
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.002 Score=67.62 Aligned_cols=32 Identities=22% Similarity=0.518 Sum_probs=27.8
Q ss_pred cccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 5 LQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 5 ~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
+.+|+|.||++|.. ..| +|.+ +++|+||||||
T Consensus 1 l~~l~i~nf~~~~~-~~i-~~~~~~~~i~G~nGsG 33 (276)
T cd03241 1 LLELSIKNFALIEE-LEL-DFEEGLTVLTGETGAG 33 (276)
T ss_pred CcEEEEeCccceee-eEE-EeCCCeEEEEcCCCCC
Confidence 46799999999965 566 8876 99999999999
No 458
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.26 E-value=0.0019 Score=70.02 Aligned_cols=34 Identities=29% Similarity=0.723 Sum_probs=30.3
Q ss_pred CccccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
|++.+|+|.||++|.. ..+ +|.+ +++|+||||||
T Consensus 1 M~l~~L~i~nFR~~~~-~~l-~~~~~~nvi~G~NGsG 35 (365)
T TIGR00611 1 MYLSRLELTDFRNYDA-VDL-ELSPGVNVIVGPNGQG 35 (365)
T ss_pred CEEEEEEEeCCcceee-eEE-EECCCeEEEECCCCCC
Confidence 8999999999999975 455 6876 99999999999
No 459
>PLN03232 ABC transporter C family member; Provisional
Probab=96.25 E-value=0.0057 Score=79.88 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=55.5
Q ss_pred hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
+|=.-.+++|++||||.+++||..+-..+.+.|++.. +++=+|+||||..|+..||.++-+.
T Consensus 1382 LARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVL~ 1443 (1495)
T PLN03232 1382 LARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNTIIDCDKILVLS 1443 (1495)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEE
Confidence 4444568999999999999999999999999999987 7889999999999999999987554
No 460
>KOG0058|consensus
Probab=96.24 E-value=0.0054 Score=69.29 Aligned_cols=67 Identities=24% Similarity=0.215 Sum_probs=57.7
Q ss_pred hhh-h---hhhc--cccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeecc
Q psy16118 988 VST-T---IVSH--RYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG-t---~al~--~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~ 1055 (1070)
||| - +||. .++..++.||||.++|||...-..+-+.|..+. ++.=+|||.||-.|+..||.++-|-.
T Consensus 605 LSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~-~~rTVlvIAHRLSTV~~Ad~Ivvi~~ 677 (716)
T KOG0058|consen 605 LSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM-QGRTVLVIAHRLSTVRHADQIVVIDK 677 (716)
T ss_pred ccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh-cCCeEEEEehhhhHhhhccEEEEEcC
Confidence 999 2 5554 457888999999999999999999999998887 88999999999999999998765554
No 461
>KOG0055|consensus
Probab=96.23 E-value=0.0055 Score=73.91 Aligned_cols=67 Identities=21% Similarity=0.224 Sum_probs=59.8
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeecc
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~ 1055 (1070)
||| - +|-.-++..++.+|||.++|||....+.|-+.|...+ .+.=.||||||-.|...||.++.+..
T Consensus 490 LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLStIrnaD~I~v~~~ 562 (1228)
T KOG0055|consen 490 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLSTIRNADKIAVMEE 562 (1228)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhhhhccCEEEEEEC
Confidence 999 1 5555668888999999999999999999999999998 99999999999999999999986654
No 462
>PLN03130 ABC transporter C family member; Provisional
Probab=96.22 E-value=0.0062 Score=79.68 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=55.9
Q ss_pred hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
+|=.-.+++|+.||||.+++||..+-..+.+.|++.. .++=+|+||||..|+..||+++-+.
T Consensus 1385 LARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~tI~~~DrIlVLd 1446 (1622)
T PLN03130 1385 LARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILVLD 1446 (1622)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHHHHhCCEEEEEE
Confidence 5555668999999999999999999999999999997 8899999999999999999987543
No 463
>PLN03140 ABC transporter G family member; Provisional
Probab=96.17 E-value=0.0064 Score=78.25 Aligned_cols=68 Identities=18% Similarity=0.186 Sum_probs=58.4
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc--hHhhcchheeecc
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE--FFSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~--~~~~ad~l~gVt~ 1055 (1070)
||| ++|...+.+.|+++|||++++||..+...++++|+.++..+.=+|++||++. ++..+|.++-+..
T Consensus 1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~ 1095 (1470)
T PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1095 (1470)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcC
Confidence 888 3787788899999999999999999999999999999744567999999997 5789998765543
No 464
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.16 E-value=0.0065 Score=65.29 Aligned_cols=63 Identities=24% Similarity=0.390 Sum_probs=51.8
Q ss_pred hhh-h-----hhhccccCCCe-EEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchhe
Q psy16118 988 VST-T-----IVSHRYHPAPF-FVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLV 1051 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf-~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~ 1051 (1070)
||| - +|=..| .-|| .||||..++||..--..+..-|...-.++.=+|+|||||..+..+|.+.
T Consensus 473 LSgGQRQRIaLARAlY-G~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkil 542 (580)
T COG4618 473 LSGGQRQRIALARALY-GDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKIL 542 (580)
T ss_pred CCchHHHHHHHHHHHc-CCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceee
Confidence 999 1 443334 5676 7899999999999888888888877448889999999999999999864
No 465
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=96.13 E-value=0.007 Score=79.20 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=55.4
Q ss_pred hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
+|=...+++|++||||.+++||..+-..+.+.|++.. .++=+|+||||..++..||+++-+.
T Consensus 1432 LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~ti~~~DrIlVld 1493 (1522)
T TIGR00957 1432 LARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNTIMDYTRVIVLD 1493 (1522)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEE
Confidence 5555568999999999999999999999999999987 7889999999999999999987543
No 466
>KOG0963|consensus
Probab=96.08 E-value=3.3 Score=46.38 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=19.5
Q ss_pred HHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 98 EHQLFKLYHNETDIKELEDELDKKKGEVEKIERRKEKAE 136 (1070)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 136 (1070)
.|.-+.+..++..++..-.++...+......++.+....
T Consensus 11 ~Wk~~dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~t 49 (629)
T KOG0963|consen 11 YWKRFDLERLQRELDAEATEIAQRQDESEISRKRLAEET 49 (629)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhH
Confidence 444455555555555555555555555444444444433
No 467
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.05 E-value=0.008 Score=59.79 Aligned_cols=62 Identities=11% Similarity=0.157 Sum_probs=47.9
Q ss_pred hhhccccCCCeEEeecccccCChhhHHHHHH-HHHHhcCCCceEEEEecCcchHhhcchheee
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALDNTNIGKVAS-YIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~-~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
.++....+.++++|||+.+++|......+.. ++..+...+.-+|++||...++..++...+|
T Consensus 101 ~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l 163 (202)
T cd03243 101 EILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGV 163 (202)
T ss_pred HHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCe
Confidence 4555566888999999999999988776654 4555542467899999999999999955444
No 468
>PRK00064 recF recombination protein F; Reviewed
Probab=96.04 E-value=0.0032 Score=68.55 Aligned_cols=34 Identities=24% Similarity=0.609 Sum_probs=30.4
Q ss_pred CccccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
|++.+|+|.||+.|.. ..+ +|.+ +++|+||||||
T Consensus 1 M~i~~l~i~nfr~~~~-~~l-~~~~~~~~i~G~NgsG 35 (361)
T PRK00064 1 MYLTRLSLTDFRNYEE-LDL-ELSPGVNVLVGENGQG 35 (361)
T ss_pred CEEEEEEEeCCCcccc-eEE-EecCCeEEEECCCCCC
Confidence 7899999999999975 456 6876 99999999999
No 469
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.04 E-value=1.9 Score=43.37 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 183 HIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYER 228 (1070)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 228 (1070)
.++..++.+...+...-...+.-...-.+++-.+......|-.++.
T Consensus 88 rLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqd 133 (305)
T PF14915_consen 88 RLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQD 133 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHH
Confidence 3334444443333333333333333333344444444444444444
No 470
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.03 E-value=0.008 Score=55.78 Aligned_cols=71 Identities=24% Similarity=0.229 Sum_probs=52.6
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecC-cchHhhcchheeeccCCcc
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLK-EEFFSHADSLVGICPGSVT 1059 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~-~~~~~~ad~l~gVt~~~~g 1059 (1070)
||| - +|=.......|.+|||.+++||.-.++++-.+|-++-+ .+.||++|||. .+-.=.|+.|+-.+. .||
T Consensus 133 LSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp-~pg 211 (259)
T COG4525 133 LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSP-GPG 211 (259)
T ss_pred ecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecC-CCc
Confidence 888 1 33333334459999999999999999999999998865 67899999997 344456777764443 355
No 471
>PLN03232 ABC transporter C family member; Provisional
Probab=96.02 E-value=0.0077 Score=78.68 Aligned_cols=66 Identities=15% Similarity=0.281 Sum_probs=54.3
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHH-HHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVA-SYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~-~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . +|=.-++++|+++|||+.++||..+...+. ..+.... ++.=+|+|||+..++..||.+|-+.
T Consensus 741 LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~~l~~aD~Ii~L~ 813 (1495)
T PLN03232 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLHFLPLMDRIILVS 813 (1495)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEECChhhHHhCCEEEEEe
Confidence 999 2 666667899999999999999998877664 4566554 6788999999999999999986553
No 472
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=96.01 E-value=0.011 Score=64.95 Aligned_cols=63 Identities=25% Similarity=0.304 Sum_probs=53.2
Q ss_pred hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecC-cchHhhcchheeecc
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLK-EEFFSHADSLVGICP 1055 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~-~~~~~~ad~l~gVt~ 1055 (1070)
.|-.....+.++||||++|+|+..-+.++.++|+.+...+.=+|+|||+ .++++.||++. |-.
T Consensus 156 IArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~Drit-VlR 219 (500)
T COG1129 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRIT-VLR 219 (500)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEE-EEe
Confidence 3333345788999999999999999999999999996578899999997 89999999864 443
No 473
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.97 E-value=0.0046 Score=60.85 Aligned_cols=33 Identities=48% Similarity=0.920 Sum_probs=26.7
Q ss_pred cccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 5 LQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 5 ~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
+.+|++.||++|.....+ +|.+ +++|+||||||
T Consensus 1 ~~~~~~~~fr~~~~~~~l-~~~~g~~~i~G~nGsG 34 (197)
T cd03278 1 LKKLELKGFKSFADKTTI-PFPPGLTAIVGPNGSG 34 (197)
T ss_pred CcEEEEeCCcCcCCCeee-ecCCCcEEEECCCCCC
Confidence 357999999999544555 5654 99999999999
No 474
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.97 E-value=0.004 Score=65.04 Aligned_cols=32 Identities=28% Similarity=0.692 Sum_probs=0.0
Q ss_pred cccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 5 LQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 5 ~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
+.+|+|.||++|. ..++ +|.+ +++|+||||||
T Consensus 1 l~~l~i~nfr~~~-~~~~-~~~~~~~~i~G~NGsG 33 (270)
T cd03242 1 LKSLELRNFRNYA-ELEL-EFEPGVTVLVGENAQG 33 (270)
T ss_pred CcEEEEeCCcCcc-eeEE-ecCCCeEEEECCCCCC
No 475
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.96 E-value=0.0084 Score=58.39 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=50.5
Q ss_pred hhh--h----hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecC-cchHhhcchh
Q psy16118 988 VST--T----IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLK-EEFFSHADSL 1050 (1070)
Q Consensus 988 LSG--t----~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~-~~~~~~ad~l 1050 (1070)
||| - .|=......|+++|||.+.|||+.++..+-+.+..+-+ -+.-||+|||. ++-+..||++
T Consensus 136 LSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri 206 (309)
T COG1125 136 LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRI 206 (309)
T ss_pred cCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceE
Confidence 999 1 33333467789999999999999999998888877742 35789999997 6778888886
No 476
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.92 E-value=1.8 Score=41.92 Aligned_cols=15 Identities=13% Similarity=0.364 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy16118 184 IQKKLASAKKSLVEV 198 (1070)
Q Consensus 184 ~~~~~~~~~~~~~~~ 198 (1070)
+...+...+.....+
T Consensus 73 Lr~~LR~~q~~~r~~ 87 (194)
T PF15619_consen 73 LRERLRKSQEQEREL 87 (194)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 477
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.92 E-value=0.011 Score=53.42 Aligned_cols=63 Identities=29% Similarity=0.254 Sum_probs=53.4
Q ss_pred ccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeeccCCcc
Q psy16118 997 YHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGICPGSVT 1059 (1070)
Q Consensus 997 ~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt~~~~g 1059 (1070)
...-|+.+|||.+|.||..|+..++++|.+--..++=+|=|=|...+- ..||+++-|+...|+
T Consensus 168 ivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~~~~~ 231 (235)
T COG4778 168 IVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSAFSPR 231 (235)
T ss_pred hccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecccCCcc
Confidence 347899999999999999999999999988744788899999987775 478999998875443
No 478
>PLN03130 ABC transporter C family member; Provisional
Probab=95.89 E-value=0.0094 Score=78.01 Aligned_cols=65 Identities=17% Similarity=0.303 Sum_probs=54.2
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHH-HHHHHHhcCCCceEEEEecCcchHhhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKV-ASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~-~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
||| ++|=.-++.+|+++|||+.++||..+...+ -..|.... ++.=+|+|||+..++..||.+|-+
T Consensus 741 LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~L 812 (1622)
T PLN03130 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILV 812 (1622)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEEEE
Confidence 999 266667899999999999999999887765 45666664 677899999999999999998654
No 479
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=95.88 E-value=0.01 Score=77.34 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=56.7
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHH-HHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVAS-YIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~-~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| ++|-.-+.++++++|||+.++||......+.+ ++..+. .+.=+|+|||+...+..||.++-+.
T Consensus 549 LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~~~~ad~ii~l~ 621 (1490)
T TIGR01271 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEHLKKADKILLLH 621 (1490)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHHHHhCCEEEEEE
Confidence 898 26666678899999999999999999999997 466776 6788999999999999999887554
No 480
>KOG0980|consensus
Probab=95.88 E-value=5 Score=46.77 Aligned_cols=10 Identities=40% Similarity=0.308 Sum_probs=4.6
Q ss_pred EEEEcCCCCc
Q psy16118 29 TAVIGPNGSG 38 (1070)
Q Consensus 29 ~lI~G~nGaG 38 (1070)
+.+.-|||+-
T Consensus 318 ~~~~~~~~sq 327 (980)
T KOG0980|consen 318 PASDPPNASQ 327 (980)
T ss_pred cccCCccccc
Confidence 4444455444
No 481
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.85 E-value=0.011 Score=58.67 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=47.4
Q ss_pred ccCCCeEEeecccccCChhhHHHHH-HHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 997 YHPAPFFVLDEIDAALDNTNIGKVA-SYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 997 ~~~~Pf~ilDEvda~lD~~n~~~~~-~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
..+.++++|||+.+++|......++ .++..+...++-+|++||...+...+|..+.+.
T Consensus 106 ~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~ 164 (200)
T cd03280 106 ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVE 164 (200)
T ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeE
Confidence 4577899999999999999988886 467766424678999999999999999876553
No 482
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=95.79 E-value=0.013 Score=76.64 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=57.3
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| ++|+..+.++++++|||++++||...+..+.++|.++. .+.=+|++||....+. .||+++-+.
T Consensus 1062 LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~ 1134 (2272)
T TIGR01257 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIIS 1134 (2272)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 888 28888888999999999999999999999999999996 7788999999987765 688765443
No 483
>KOG0980|consensus
Probab=95.79 E-value=5.4 Score=46.50 Aligned_cols=8 Identities=38% Similarity=0.617 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy16118 211 DLETQLAD 218 (1070)
Q Consensus 211 ~~~~~l~~ 218 (1070)
++..++..
T Consensus 390 qLr~elaq 397 (980)
T KOG0980|consen 390 QLRNELAQ 397 (980)
T ss_pred HHHHHHHH
Confidence 33333333
No 484
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.76 E-value=1.4 Score=39.57 Aligned_cols=118 Identities=18% Similarity=0.190 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 320 AQMTEYTNLKAEATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASL 399 (1070)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l 399 (1070)
..+.+.....+.+..++..++.++...+.....+..........+..+..++..+...+..+...+..+..+...+...+
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l 89 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL 89 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q psy16118 400 KDNKKLKEELNSDVGSSKNRVQELQKELEQVIEELGDA 437 (1070)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 437 (1070)
...+..+.+|......+..-+..+......+.......
T Consensus 90 q~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ 127 (140)
T PF10473_consen 90 QKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSA 127 (140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=95.72 E-value=0.012 Score=76.97 Aligned_cols=66 Identities=12% Similarity=0.245 Sum_probs=55.9
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHH---hcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVT---KTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~---~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| ++|-.-+.++|+++|||++++||..+...+.+.+.. +. .+.=+|+|||+...+..||.++-+.
T Consensus 761 LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~-~~~tvIlvTH~~~~l~~~D~ii~l~ 835 (1522)
T TIGR00957 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL-KNKTRILVTHGISYLPQVDVIIVMS 835 (1522)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhh-cCCEEEEEeCChhhhhhCCEEEEec
Confidence 999 266666789999999999999999999999998854 33 4567999999999999999976553
No 486
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=95.71 E-value=0.013 Score=63.08 Aligned_cols=66 Identities=21% Similarity=0.254 Sum_probs=0.0
Q ss_pred ccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecC-cchHhhcchheeeccCCccceeeecccc
Q psy16118 997 YHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLK-EEFFSHADSLVGICPGSVTISSICFGHY 1068 (1070)
Q Consensus 997 ~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~-~~~~~~ad~l~gVt~~~~gvs~v~~~~~ 1068 (1070)
|..+-|.||||++|-|-+.-+..|...|+.+...+.=+|+|||+ +++|+.||+ ||-=..|. |+|++
T Consensus 156 yr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDr---vTVLR~Gk---vvgt~ 222 (501)
T COG3845 156 YRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADR---VTVLRRGK---VVGTV 222 (501)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCe---eEEEeCCe---EEeee
No 487
>KOG0995|consensus
Probab=95.64 E-value=4.7 Score=44.73 Aligned_cols=356 Identities=15% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q psy16118 44 YERLKAEMIQAEEETNM-SYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDIKELEDELDKKK 122 (1070)
Q Consensus 44 y~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1070)
|.....++...+..... ....+..+......+.....+.++.-.-...++ .....++....+...-+..+.
T Consensus 215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslr--------e~~~~L~~D~nK~~~y~~~~~ 286 (581)
T KOG0995|consen 215 SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLR--------EKKARLQDDVNKFQAYVSQMK 286 (581)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHH--------HHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 123 GEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREM---DVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVR 199 (1070)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 199 (1070)
..-..+...+..+...+.....++..+..+...+...++.. -..+..+..+...+...+..+...+..+....-+.+
T Consensus 287 ~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~ 366 (581)
T KOG0995|consen 287 SKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELK 366 (581)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhhhHHhhhccchhhhhHHHHHHHHHHHHHHHHhHHHHHH
Q psy16118 200 QANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQ 279 (1070)
Q Consensus 200 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 279 (1070)
-.++..-..+...-.++..+-..+...-.....+-.+.-+..--....-...-...+...+......+.+...+...++.
T Consensus 367 l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~ 446 (581)
T KOG0995|consen 367 LEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQE 446 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcccChHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy16118 280 ANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATKRAGKILQQLDTINREQKGDQDKLDN 359 (1070)
Q Consensus 280 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 359 (1070)
.+.+....+....+.+..+..++...... ........+........+++.
T Consensus 447 ~~~~~~~~i~E~~~~l~~~~~el~~~~~~------------------------------~~~~k~e~eee~~k~~~E~e~ 496 (581)
T KOG0995|consen 447 HFSNKASTIEEKIQILGEIELELKKAESK------------------------------YELKKEEAEEEWKKCRKEIEK 496 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy16118 360 ELRQQVQT----QNEIKKKRHEMEEAQKRIDKLEDHIRQNEASL-KDNKKLKEELNSDVGSSKNRVQELQKELEQVIEEL 434 (1070)
Q Consensus 360 ~~~~~~~~----~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l 434 (1070)
+...+..+ ...+......+...+..++.+-....+-...+ ..+..-+...-.-....+..+.++...+...-.++
T Consensus 497 le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~iqs~le~~k~~~~~~~~ei 576 (581)
T KOG0995|consen 497 LEEELLNLKLVLNTSMKEAEELVKSIELELDRMVATGEEERQKIAKQLFAVIDQISDFKVSIQSSLENLKADLHKECEEI 576 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhh
Q psy16118 435 GDA 437 (1070)
Q Consensus 435 ~~~ 437 (1070)
..+
T Consensus 577 ~~~ 579 (581)
T KOG0995|consen 577 EKA 579 (581)
T ss_pred Hhc
No 488
>KOG4593|consensus
Probab=95.63 E-value=5.4 Score=45.35 Aligned_cols=394 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred CCCCeEEEEcCCCCc-------------------------------------------------------cchHHHHHHH
Q psy16118 24 PLKKFTAVIGPNGSG-------------------------------------------------------ALKDDYERLK 48 (1070)
Q Consensus 24 df~~l~lI~G~nGaG-------------------------------------------------------~~~~~y~~~~ 48 (1070)
+|+....++||.|+| .+.+......
T Consensus 14 ~~~~s~~~s~~~~~~s~l~~~s~s~g~sP~~~q~s~~~~~~s~n~~~~s~~~~~~~~l~~Lqns~kr~el~~~k~~~i~~ 93 (716)
T KOG4593|consen 14 LRSLSNFPSQPVESGSQLDISSSSPGSSPNLYQPSMQSEERSENITSKSLLMQLEDELMQLQNSHKRAELELTKAQSILA 93 (716)
T ss_pred hhccCCCCCcccccccccchhccCCCCCccccCcCCCchhhhccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q psy16118 49 AEMIQAEEETNMSYLKKKGVVAERKE----AKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDIKELEDELDKKKGE 124 (1070)
Q Consensus 49 ~~~~~~~~~~~~~~~~i~~l~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1070)
.......++......++..+....+. +..+......-.............-.|..+........+....+..+..+
T Consensus 94 r~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e 173 (716)
T KOG4593|consen 94 RNYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWE 173 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhH---------HHHHHHHHHHHHHHHHHH
Q psy16118 125 VEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKS---------KERVSHIQKKLASAKKSL 195 (1070)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~~~~ 195 (1070)
+.-.+..+..+...+....+.+.....++......+......+.......... ..++..+...+...-..+
T Consensus 174 ~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel 253 (716)
T KOG4593|consen 174 VMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQEL 253 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHhcCCCCccchhhhhhHHhhhccchhhhhHHHHHHHHHHHHHHHH
Q psy16118 196 VEVRQANEAHNKDIA---DLETQLADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAKK 272 (1070)
Q Consensus 196 ~~~~~~~~~~~~~~~---~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 272 (1070)
..+...+..+..++. +...-+.-+..+...++.+.. .+..+...+..++-....+..++...+.
T Consensus 254 ~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~-------------~~~~l~~~~~~LELeN~~l~tkL~rwE~ 320 (716)
T KOG4593|consen 254 EELERALSQLREELATLRENRETVGLLQEELEGLQSKLG-------------RLEKLQSTLLGLELENEDLLTKLQRWER 320 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-------------HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q ss_pred -------------------------------------------hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Q psy16118 273 -------------------------------------------SLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQS 309 (1070)
Q Consensus 273 -------------------------------------------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 309 (1070)
.+....++....-..+......+..+...+......
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~- 399 (716)
T KOG4593|consen 321 ADQEMGSLRTPEDLMEKLVNEQSRNANLKNKNSTVTSPARGLERARQLLKEELKQVAGITEEETKLKELHETLARRLQK- 399 (716)
T ss_pred HhhhhhccCCHHHHHHHHHHHHHHHhhhccccccccCcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-
Q ss_pred CCCCCcccChHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 310 IPGRDINLESAQMTEYTNLKAEATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLE 389 (1070)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 389 (1070)
..-+......+...+.........+...+.......+.+..-+..+............+....+....
T Consensus 400 ------------~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k 467 (716)
T KOG4593|consen 400 ------------RALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQK 467 (716)
T ss_pred ------------HHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q psy16118 390 DHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEELGDAKTDKHE 443 (1070)
Q Consensus 390 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 443 (1070)
.....+...+.++..++......+...+....-+...+.....++..+......
T Consensus 468 ~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~r 521 (716)
T KOG4593|consen 468 KRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDR 521 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
No 489
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.61 E-value=1.6 Score=39.20 Aligned_cols=138 Identities=18% Similarity=0.264 Sum_probs=0.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHH
Q psy16118 107 NETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQK 186 (1070)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (1070)
+..+.-....++...+.+-+.+...+..++..+.........+..+.......+..+...+..+...+..+...+..+..
T Consensus 1 de~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 1 DEEKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred CcHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhhhHHhhhccchhhhhHHHHHHHHHH
Q psy16118 187 KLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKK 266 (1070)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (1070)
....+...+...+..+..+......+...+..++.......+ .+...+..++..
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e--------------------------~~~~~ve~L~~q 134 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKE--------------------------ESKSAVEMLQKQ 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHH
Q ss_pred HHHH
Q psy16118 267 LASA 270 (1070)
Q Consensus 267 ~~~~ 270 (1070)
+..+
T Consensus 135 l~~L 138 (140)
T PF10473_consen 135 LKEL 138 (140)
T ss_pred Hhhh
No 490
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=95.55 E-value=0.12 Score=54.67 Aligned_cols=112 Identities=14% Similarity=0.133 Sum_probs=0.0
Q ss_pred CccccceecccccccCcccccCCCC-eEEEEcCCCCc-------------------------------------------
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG------------------------------------------- 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG------------------------------------------- 38 (1070)
|.+..|++.||..| ....+ +|++ +++++|+||+|
T Consensus 1 M~l~~L~L~nFRNy-~~~~l-~~~p~~nvl~G~NgqGKTNlLEAI~~l~~grS~Rt~~~~~lir~~~~~~~i~~~v~~~~ 78 (363)
T COG1195 1 MYLLSLLLRNFRNY-AELDL-DLSPGVNVLVGENGQGKTNLLEAIYLLALGRSHRTSRDKELIRTGADEAEISARVQRKG 78 (363)
T ss_pred CceeeeehhhcCCc-cccee-ccCCCcEEEECCCCCchHHHHHHHHHHccccCccccchhHHHhcCCccEEEEEEEeecc
Q ss_pred -------------------------------------------------cchHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy16118 39 -------------------------------------------------ALKDDYERLKAEMIQAEEETNMSYLKKKGVV 69 (1070)
Q Consensus 39 -------------------------------------------------~~~~~y~~~~~~~~~~~~~~~~~~~~i~~l~ 69 (1070)
.....=.++.-.+-...-..-..+.....+.
T Consensus 79 ~~~~~~~~~~~~g~~~vring~~~~~~~el~g~l~~vlf~Pedl~Lv~G~P~~RRrFLD~~l~~~~p~y~~~~~~Y~k~l 158 (363)
T COG1195 79 REGTLGLQISKKGRRRVRINGTKARKLAELAGHLNVVLFTPEDLGLVKGSPSDRRRFLDWLLFQIEPVYLEALSNYEKLL 158 (363)
T ss_pred ceeeeEEEeccCcceEEEECCcccccHHHHhhhCceEEecccccccccCCHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHH
Q psy16118 70 AERKEAKIEK-DEAEKYQRIREEIVAKEVEHQLFKLYHNETDIKELED 116 (1070)
Q Consensus 70 ~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1070)
.+...+-... ....-+.-+..++-..-..+..+.......--.....
T Consensus 159 kqRN~~Lk~~~~d~~~L~~~d~qLa~~g~~i~~~R~~~l~~L~~~~~~ 206 (363)
T COG1195 159 KQRNALLKQLQGDYAWLDVWDQQLAELGAEIAAARAEYLNALAPLAEK 206 (363)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PRK14079 recF recombination protein F; Provisional
Probab=95.49 E-value=0.16 Score=55.12 Aligned_cols=140 Identities=16% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccCCCceeeccCCC--
Q psy16118 909 EKLEHAKENLMKTNEEFENARK-----RAKKAKANFDRIKKERYDKFTRCFEHVSNEIDGAG-SESVLPRPFLGPENP-- 980 (1070)
Q Consensus 909 ~e~~~~~~~~~~l~~~~~~l~~-----~~~~l~~~i~~~~~~~~~~f~~~~~~i~~~~~~~f-~~~~~~~~~l~~~~~-- 980 (1070)
..|...-.+|..+..+...+-+ ........+..+-......-..+++.++..|..+| ...++..+.+.....
T Consensus 142 ~~y~~~l~~y~k~lkqRn~lLk~~~~~~l~~w~~~l~~~g~~i~~~R~~~~~~l~~~~~~~~~~l~~~~~l~l~y~~~~~ 221 (349)
T PRK14079 142 ARYAALLSAYERAVQQRNAALKSGGGWGLHVWDDELVKLGDEIMALRRRALTRLSELAREAYAELGSRKPLRLELSESTA 221 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEecCcC
Q ss_pred CCCc---------------------------------cch--hhh----h--hhhccc---------cCCCeEEeecccc
Q psy16118 981 EEPL---------------------------------TYR--VST----T--IVSHRY---------HPAPFFVLDEIDA 1010 (1070)
Q Consensus 981 ~~~~---------------------------------~~r--LSG----t--~al~~~---------~~~Pf~ilDEvda 1010 (1070)
.+.+ +.+ +|+ + +|+... ...|+++||||.+
T Consensus 222 ~~~~~~~l~~~~~~d~~~g~T~~GpHRdD~~~~~~g~~~~~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~s 301 (349)
T PRK14079 222 PEGYLAALEARRAEELARGATVVGPHRDDLVLTLEGRPAHRYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTA 301 (349)
T ss_pred HHHHHHHHHHhhHHHHHcCCCCCCCchhceEEEECCEehHHhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccch
Q ss_pred cCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 1011 ALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 1011 ~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
.||...+..+.++|.... |++|.|-. .-..+|..+.|.
T Consensus 302 eLD~~~~~~l~~~l~~~~----q~~it~t~--~~~~~~~~~~~~ 339 (349)
T PRK14079 302 ELDPRRRGALLALAASLP----QAIVAGTE--APPGAALTLRIE 339 (349)
T ss_pred hcCHHHHHHHHHHHhcCC----cEEEEcCC--CCCCCceEEEEe
No 492
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.48 E-value=0.0037 Score=75.21 Aligned_cols=315 Identities=14% Similarity=0.250 Sum_probs=0.0
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhHHHHHHHH
Q psy16118 106 HNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEI-NKKRPSLIKSKERVSHI 184 (1070)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 184 (1070)
.++..+..+..++......+..+...+..+......+..++.....+...+...++.....+ ................+
T Consensus 90 ~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~~e~~~~~k~~le~~~~~L~~E~~~~~~e~~~~~~~l 169 (722)
T PF05557_consen 90 ELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEELEEAEEELEQLKRKLEEEKRRLQREKEQLLEEAREEISSL 169 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhhhHHhhhccchhhhhHHHHHHHH
Q psy16118 185 QKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQ 264 (1070)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 264 (1070)
..++..++..+...+..+..+..++..+...+..+...+......+. .+......+......+..++
T Consensus 170 ~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~-------------~L~~~q~~~~e~e~~i~~Le 236 (722)
T PF05557_consen 170 KNELSELERQAENAESQIQSLESELEELKEQLEELQSELQEAEQQLQ-------------ELQASQASLAEAEQKIKELE 236 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhhHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcccChHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy16118 265 KKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATKRAGKILQQLD 344 (1070)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 344 (1070)
.++....... .+...+......+..++.....+...+..+.....+...+......+..--.....+..++..++-+..
T Consensus 237 ~el~~~~~~~-~i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~ 315 (722)
T PF05557_consen 237 AELKDQESDA-EINKELKEQLAHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENE 315 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy16118 345 TINREQKGDQDKLDNEL---RQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQ 421 (1070)
Q Consensus 345 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 421 (1070)
.+..++..-..-....- ..-..+...+..++.+...+..++..+...+..+...+..+..++..+...+..++..+.
T Consensus 316 ~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~ 395 (722)
T PF05557_consen 316 KLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLE 395 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q psy16118 422 ELQKELEQVIEEL 434 (1070)
Q Consensus 422 ~l~~~~~~~~~~l 434 (1070)
.+......+.+..
T Consensus 396 ~~~~~~~RLerq~ 408 (722)
T PF05557_consen 396 ALKKLIRRLERQK 408 (722)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
No 493
>PLN03140 ABC transporter G family member; Provisional
Probab=95.42 E-value=0.015 Score=74.83 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=0.0
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC--CceEEEEecCc--chHhhcchheeeccC
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD--SLQTIVISLKE--EFFSHADSLVGICPG 1056 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~--~~Q~i~iT~~~--~~~~~ad~l~gVt~~ 1056 (1070)
||| |+|...+.++|+++|||++++||..+...+++.|+.++ + ++=+|++||++ .++..+|.++-+..+
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la-~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIV-HLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHH-HhcCCEEEEEecCCCHHHHHHhheEEEeeCc
No 494
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.39 E-value=0.023 Score=64.37 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=0.0
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccce
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTIS 1061 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs 1061 (1070)
||| + +|-..+.+.-+.+|||++-+||-..+.-+-.+|..+ ++ =+|||||...++...-..+ +... .|.-
T Consensus 154 LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~FLd~V~t~I-~~ld-~g~l 228 (530)
T COG0488 154 LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYFLDNVATHI-LELD-RGKL 228 (530)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHHHHHHhhhe-EEec-CCce
Q ss_pred eeeccccC
Q psy16118 1062 SICFGHYS 1069 (1070)
Q Consensus 1062 ~v~~~~~~ 1069 (1070)
....|-||
T Consensus 229 ~~y~Gny~ 236 (530)
T COG0488 229 TPYKGNYS 236 (530)
T ss_pred eEecCCHH
No 495
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=95.38 E-value=0.0078 Score=61.04 Aligned_cols=34 Identities=32% Similarity=0.556 Sum_probs=0.0
Q ss_pred CccccceecccccccCcccccCCCC--eEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLKK--FTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~~--l~lI~G~nGaG 38 (1070)
||+-+|.|.||.+|..... +|.. ++.|+||||||
T Consensus 1 mrLrkiSl~nfr~f~~ldi--tf~e~~ttIivgpNGsG 36 (440)
T COG3950 1 MRLRKISLNNFRCFLNLDI--TFGESETTIIVGPNGSG 36 (440)
T ss_pred Cccchhhhhhhhhhhhcee--ecCCCceEEEECCCCCC
No 496
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=95.38 E-value=0.017 Score=74.58 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=0.0
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC--CceEEEEecCc--chHhhcchheeeccCC
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD--SLQTIVISLKE--EFFSHADSLVGICPGS 1057 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~--~~Q~i~iT~~~--~~~~~ad~l~gVt~~~ 1057 (1070)
||| ++|.....+.|+++|||++++||..+...+.++|+.++ + +.=+|++||++ .++..+|.++-+..+.
T Consensus 210 LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la-~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~ 288 (1394)
T TIGR00956 210 VSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSA-NILDTTPLVAIYQCSQDAYELFDKVIVLYEGY 288 (1394)
T ss_pred CCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH-HhcCCEEEEEecCCCHHHHHhhceEEEEeCCe
No 497
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.38 E-value=0.03 Score=55.11 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=0.0
Q ss_pred cCCCeEEeecccccCChhhHHHHHH-HHHHhcCCCceEEEEecCcchHhhc-------chheeeccCCccc---eeeecc
Q psy16118 998 HPAPFFVLDEIDAALDNTNIGKVAS-YIVTKTQDSLQTIVISLKEEFFSHA-------DSLVGICPGSVTI---SSICFG 1066 (1070)
Q Consensus 998 ~~~Pf~ilDEvda~lD~~n~~~~~~-~l~~~~~~~~Q~i~iT~~~~~~~~a-------d~l~gVt~~~~gv---s~v~~~ 1066 (1070)
.+.++++|||+.+++|......+.. ++..+...+.-+|++||....+... -..+++.+.+.++ =++++|
T Consensus 104 ~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~y~~~~G 183 (199)
T cd03283 104 GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNYHFREDIDDNKLIFDYKLKPG 183 (199)
T ss_pred CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEEEEEEEEECCeeeEEEEeCCC
No 498
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.30 E-value=0.028 Score=63.69 Aligned_cols=76 Identities=14% Similarity=0.221 Sum_probs=0.0
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccce
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTIS 1061 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs 1061 (1070)
||| . ||.....|+.|+||||++-+||-..+..+.+.|..+ .-=+|+|||...+....-.-+=+..+ .-
T Consensus 440 LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~Fl~~va~~i~~~~~---~~ 513 (530)
T COG0488 440 LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRYFLDRVATRIWLVED---KV 513 (530)
T ss_pred cCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcceEEEEcC---ce
Q ss_pred eeeccccC
Q psy16118 1062 SICFGHYS 1069 (1070)
Q Consensus 1062 ~v~~~~~~ 1069 (1070)
+.+.|.|+
T Consensus 514 ~~~~g~y~ 521 (530)
T COG0488 514 EEFEGGYE 521 (530)
T ss_pred eEcCCCHH
No 499
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=95.28 E-value=0.029 Score=59.58 Aligned_cols=83 Identities=19% Similarity=0.128 Sum_probs=0.0
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHhhcchheeeccCCccc
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFSHADSLVGICPGSVTI 1060 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gv 1060 (1070)
||| +.|....++|-+|+|||.-|+||..-+-.+++.|+.+.- ...=-+||-|.--|...-.-=+=|+-++||+
T Consensus 456 LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~ 535 (591)
T COG1245 456 LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGK 535 (591)
T ss_pred CCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEecCCCc
Q ss_pred eeeeccccCC
Q psy16118 1061 SSICFGHYSM 1070 (1070)
Q Consensus 1061 s~v~~~~~~~ 1070 (1070)
.-...+..+|
T Consensus 536 ~g~a~~P~~m 545 (591)
T COG1245 536 HGHASPPMSM 545 (591)
T ss_pred cCcCCCCccH
No 500
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=95.23 E-value=0.025 Score=74.14 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=0.0
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhh-cchheeeccC
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSH-ADSLVGICPG 1056 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~-ad~l~gVt~~ 1056 (1070)
||| ++|+....+.|+++|||+.++||..++..+.++|.++...+.=+|++||....++. ||+++-+..+
T Consensus 2071 LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G 2146 (2272)
T TIGR01257 2071 YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKG 2146 (2272)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Done!