Query psy16118
Match_columns 1070
No_of_seqs 326 out of 2764
Neff 10.9
Searched_HMMs 29240
Date Fri Aug 16 21:22:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16118.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16118hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kta_B Chromosome segregation 99.9 4E-22 1.4E-26 187.7 9.2 123 943-1067 2-152 (173)
2 2wd5_A Structural maintenance 99.8 2.8E-19 9.7E-24 179.7 7.5 183 450-637 40-223 (233)
3 3l51_B Structural maintenance 99.8 2.9E-18 9.9E-23 160.6 11.9 146 460-611 15-160 (166)
4 1w1w_A Structural maintenance 99.7 2.3E-17 8E-22 184.4 8.4 162 904-1065 223-422 (430)
5 3nwc_A SMC protein; structural 99.7 1.3E-16 4.6E-21 151.2 10.7 137 460-612 32-169 (189)
6 3l51_A Structural maintenance 99.7 1.5E-16 5E-21 148.7 9.8 143 462-609 15-161 (161)
7 2wd5_B Structural maintenance 99.6 3.8E-15 1.3E-19 148.4 14.8 151 450-611 29-186 (213)
8 1gxl_A SMC, chromosome segrega 99.5 5.4E-14 1.8E-18 140.8 13.3 146 460-611 40-186 (213)
9 1gxj_A SMC, chromosome segrega 99.4 1.3E-13 4.3E-18 134.2 8.4 146 460-611 28-174 (186)
10 4ad8_A DNA repair protein RECN 99.2 4.4E-09 1.5E-13 120.1 25.7 68 988-1056 397-473 (517)
11 1i84_S Smooth muscle myosin he 99.0 1.2E-09 4.3E-14 136.5 14.6 37 110-146 858-894 (1184)
12 1i84_S Smooth muscle myosin he 98.9 2.2E-09 7.4E-14 134.3 8.9 44 115-158 856-899 (1184)
13 1e69_A Chromosome segregation 98.8 6E-09 2E-13 111.1 8.4 68 997-1066 239-306 (322)
14 3auy_A DNA double-strand break 98.6 4.3E-07 1.5E-11 98.8 16.1 66 997-1064 302-368 (371)
15 4aby_A DNA repair protein RECN 98.6 3.6E-07 1.2E-11 102.0 15.7 67 988-1055 296-370 (415)
16 1f2t_B RAD50 ABC-ATPase; DNA d 98.6 5.4E-08 1.8E-12 88.8 6.9 69 996-1065 78-146 (148)
17 3qkt_A DNA double-strand break 98.5 2E-07 6.9E-12 99.9 7.6 73 992-1065 265-337 (339)
18 3auy_A DNA double-strand break 98.2 2.7E-07 9.1E-12 100.4 1.5 36 1-38 1-37 (371)
19 1f2t_A RAD50 ABC-ATPase; DNA d 98.1 8.6E-07 3E-11 81.6 2.7 34 3-38 1-35 (149)
20 2ff7_A Alpha-hemolysin translo 97.9 1.1E-05 3.7E-10 81.5 6.5 66 988-1054 146-217 (247)
21 2pcj_A ABC transporter, lipopr 97.9 9.9E-06 3.4E-10 80.5 5.9 67 988-1054 141-213 (224)
22 3tif_A Uncharacterized ABC tra 97.9 9.2E-06 3.2E-10 81.3 5.6 67 988-1054 146-219 (235)
23 2ghi_A Transport protein; mult 97.9 1E-05 3.5E-10 82.3 6.0 66 988-1054 156-227 (260)
24 3qks_A DNA double-strand break 97.9 4.2E-06 1.4E-10 81.9 2.7 34 3-38 1-35 (203)
25 3nh6_A ATP-binding cassette SU 97.8 1.4E-05 4.7E-10 82.9 5.5 66 988-1054 191-262 (306)
26 2ixe_A Antigen peptide transpo 97.8 1.8E-05 6.3E-10 81.0 6.2 67 988-1054 157-230 (271)
27 1mv5_A LMRA, multidrug resista 97.8 1.3E-05 4.3E-10 81.0 3.9 66 988-1054 140-211 (243)
28 3qkt_A DNA double-strand break 97.7 6.5E-06 2.2E-10 88.2 1.7 34 3-38 1-35 (339)
29 2d2e_A SUFC protein; ABC-ATPas 97.7 3.1E-05 1.1E-09 78.4 6.7 67 988-1054 144-218 (250)
30 2zu0_C Probable ATP-dependent 97.7 3E-05 1E-09 79.2 6.1 67 988-1054 165-239 (267)
31 3kta_A Chromosome segregation 97.7 1.2E-05 4.1E-10 77.7 2.6 36 2-38 1-38 (182)
32 2cbz_A Multidrug resistance-as 97.7 2.3E-05 7.8E-10 78.6 4.7 66 988-1054 128-202 (237)
33 2olj_A Amino acid ABC transpor 97.7 3.3E-05 1.1E-09 78.4 5.9 67 988-1054 160-233 (263)
34 1ji0_A ABC transporter; ATP bi 97.7 3.5E-05 1.2E-09 77.4 5.9 67 988-1054 140-213 (240)
35 2yz2_A Putative ABC transporte 97.7 3.7E-05 1.3E-09 78.6 6.1 67 988-1054 139-212 (266)
36 2nq2_C Hypothetical ABC transp 97.7 3.5E-05 1.2E-09 78.0 5.6 67 988-1054 129-203 (253)
37 1vpl_A ABC transporter, ATP-bi 97.6 4.4E-05 1.5E-09 77.3 5.9 67 988-1054 147-220 (256)
38 1b0u_A Histidine permease; ABC 97.6 3.6E-05 1.2E-09 78.4 5.4 67 988-1054 154-227 (262)
39 1g6h_A High-affinity branched- 97.6 4.3E-05 1.5E-09 77.8 5.8 67 988-1054 154-227 (257)
40 3qf7_A RAD50; ABC-ATPase, ATPa 97.6 4.7E-05 1.6E-09 82.0 6.3 58 998-1055 302-359 (365)
41 1sgw_A Putative ABC transporte 97.6 2.9E-05 1E-09 76.0 4.0 64 988-1051 134-204 (214)
42 2onk_A Molybdate/tungstate ABC 97.6 4.6E-05 1.6E-09 76.3 5.0 67 988-1054 127-201 (240)
43 2pze_A Cystic fibrosis transme 97.6 3.4E-05 1.2E-09 76.9 3.8 66 988-1054 131-203 (229)
44 2pjz_A Hypothetical protein ST 97.6 7.9E-05 2.7E-09 75.6 6.5 64 988-1054 129-200 (263)
45 3gfo_A Cobalt import ATP-bindi 97.6 6E-05 2.1E-09 77.0 5.6 67 988-1054 144-218 (275)
46 3qf7_A RAD50; ABC-ATPase, ATPa 97.5 1.9E-05 6.5E-10 85.1 1.7 34 3-38 1-35 (365)
47 2qi9_C Vitamin B12 import ATP- 97.5 4.5E-05 1.6E-09 76.7 4.2 67 988-1054 127-207 (249)
48 2ihy_A ABC transporter, ATP-bi 97.5 6.1E-05 2.1E-09 77.3 4.2 67 988-1054 162-237 (279)
49 2bbs_A Cystic fibrosis transme 97.4 7.4E-05 2.5E-09 77.0 3.9 66 988-1054 160-232 (290)
50 4g1u_C Hemin import ATP-bindin 97.3 0.00012 4.1E-09 74.6 4.5 56 999-1054 165-222 (266)
51 3b5x_A Lipid A export ATP-bind 97.3 0.00017 5.9E-09 83.4 6.3 66 988-1054 481-552 (582)
52 3b60_A Lipid A export ATP-bind 97.3 0.00017 5.7E-09 83.5 5.9 66 988-1054 481-552 (582)
53 3qf4_A ABC transporter, ATP-bi 97.3 0.0002 7E-09 82.6 6.5 66 988-1054 480-551 (587)
54 2v71_A Nuclear distribution pr 97.3 0.1 3.4E-06 48.0 23.8 18 410-427 160-177 (189)
55 1e69_A Chromosome segregation 97.3 9.4E-05 3.2E-09 78.5 2.7 35 3-38 1-36 (322)
56 3qf4_B Uncharacterized ABC tra 97.3 0.00023 8E-09 82.4 6.3 66 988-1054 492-563 (598)
57 2yl4_A ATP-binding cassette SU 97.3 0.0002 6.8E-09 83.1 5.6 66 988-1054 484-555 (595)
58 4a82_A Cystic fibrosis transme 97.2 0.00024 8.3E-09 82.0 6.2 66 988-1054 478-549 (578)
59 3gd7_A Fusion complex of cysti 97.2 0.0002 6.9E-09 76.8 4.9 65 988-1053 156-226 (390)
60 3d31_A Sulfate/molybdate ABC t 97.2 0.00033 1.1E-08 74.0 6.2 66 988-1053 128-201 (348)
61 3tui_C Methionine import ATP-b 97.2 0.00034 1.2E-08 73.8 6.0 67 988-1054 164-238 (366)
62 1oxx_K GLCV, glucose, ABC tran 97.1 0.00041 1.4E-08 73.6 6.1 66 988-1053 141-214 (353)
63 2it1_A 362AA long hypothetical 97.1 0.00041 1.4E-08 73.6 5.8 66 988-1053 134-207 (362)
64 2yyz_A Sugar ABC transporter, 97.1 0.00048 1.6E-08 73.0 5.9 66 988-1053 134-207 (359)
65 1z47_A CYSA, putative ABC-tran 97.1 0.00046 1.6E-08 72.9 5.6 66 988-1053 146-219 (355)
66 1w1w_A Structural maintenance 97.0 0.00021 7.1E-09 79.5 2.6 36 2-38 1-38 (430)
67 1g29_1 MALK, maltose transport 97.0 0.00055 1.9E-08 73.1 5.5 66 988-1053 140-213 (372)
68 1v43_A Sugar-binding transport 97.0 0.00062 2.1E-08 72.5 5.6 66 988-1053 142-215 (372)
69 3bk7_A ABC transporter ATP-bin 96.9 0.00073 2.5E-08 77.6 6.3 66 988-1053 229-301 (607)
70 4f4c_A Multidrug resistance pr 96.9 0.00064 2.2E-08 86.2 6.1 65 988-1053 555-625 (1321)
71 2v71_A Nuclear distribution pr 96.9 0.25 8.4E-06 45.4 23.0 12 287-298 25-36 (189)
72 3rlf_A Maltose/maltodextrin im 96.9 0.00072 2.4E-08 71.9 5.0 66 988-1053 134-207 (381)
73 2o5v_A DNA replication and rep 96.8 0.0089 3.1E-07 63.4 13.0 52 998-1055 291-342 (359)
74 3fvq_A Fe(3+) IONS import ATP- 96.8 0.0011 3.6E-08 70.1 5.8 66 988-1053 139-212 (359)
75 1yqt_A RNAse L inhibitor; ATP- 96.8 0.00086 3E-08 76.1 5.4 67 988-1054 402-476 (538)
76 2r6f_A Excinuclease ABC subuni 96.8 0.00084 2.9E-08 79.4 5.2 67 988-1054 846-921 (972)
77 3bk7_A ABC transporter ATP-bin 96.8 0.00095 3.2E-08 76.6 5.4 67 988-1054 472-546 (607)
78 3ozx_A RNAse L inhibitor; ATP 96.7 0.001 3.5E-08 75.2 5.4 67 988-1054 386-460 (538)
79 2ygr_A Uvrabc system protein A 96.7 0.00096 3.3E-08 79.2 5.2 67 988-1054 864-939 (993)
80 1yqt_A RNAse L inhibitor; ATP- 96.7 0.0011 3.9E-08 75.1 5.6 66 988-1053 159-231 (538)
81 3j16_B RLI1P; ribosome recycli 96.7 0.0011 3.7E-08 76.0 5.1 66 988-1053 468-541 (608)
82 4ad8_A DNA repair protein RECN 96.7 0.024 8.3E-07 64.3 16.3 35 2-38 37-72 (517)
83 2vf7_A UVRA2, excinuclease ABC 96.7 0.0012 4E-08 78.1 5.5 67 988-1054 731-806 (842)
84 3pih_A Uvrabc system protein A 96.7 0.0015 5.2E-08 77.9 6.3 67 988-1054 465-539 (916)
85 2r6f_A Excinuclease ABC subuni 96.7 0.002 6.9E-08 76.2 7.0 67 988-1054 505-579 (972)
86 3o0z_A RHO-associated protein 96.7 0.33 1.1E-05 43.2 21.5 36 387-422 101-136 (168)
87 3ozx_A RNAse L inhibitor; ATP 96.7 0.0017 5.7E-08 73.4 6.2 63 988-1051 139-208 (538)
88 3ux8_A Excinuclease ABC, A sub 96.6 0.0014 4.8E-08 77.3 5.6 66 988-1053 203-276 (670)
89 3pih_A Uvrabc system protein A 96.6 0.0013 4.6E-08 78.3 5.2 67 988-1054 806-881 (916)
90 4f4c_A Multidrug resistance pr 96.6 0.0015 5E-08 83.0 5.5 61 992-1053 1228-1288(1321)
91 2ygr_A Uvrabc system protein A 96.5 0.0017 6E-08 77.1 5.5 67 988-1054 522-596 (993)
92 1qhl_A Protein (cell division 96.5 0.0001 3.4E-09 72.6 -4.1 34 3-38 5-39 (227)
93 3ux8_A Excinuclease ABC, A sub 96.5 0.0018 6.3E-08 76.3 5.3 66 988-1053 544-618 (670)
94 3g5u_A MCG1178, multidrug resi 96.5 0.0019 6.5E-08 81.7 5.7 66 988-1054 1172-1243(1284)
95 3j16_B RLI1P; ribosome recycli 96.4 0.0033 1.1E-07 72.0 6.9 66 988-1053 222-294 (608)
96 2fxo_A Myosin heavy chain, car 96.4 0.38 1.3E-05 41.9 18.3 111 109-226 13-123 (129)
97 2vf7_A UVRA2, excinuclease ABC 96.4 0.0036 1.2E-07 74.0 7.0 67 988-1054 380-454 (842)
98 3o0z_A RHO-associated protein 96.4 0.49 1.7E-05 42.2 22.2 42 388-429 95-136 (168)
99 3g5u_A MCG1178, multidrug resi 96.4 0.0022 7.6E-08 81.1 5.5 65 988-1053 527-597 (1284)
100 3vkg_A Dynein heavy chain, cyt 96.1 1.7 5.7E-05 59.1 30.1 10 29-38 909-918 (3245)
101 2iw3_A Elongation factor 3A; a 96.1 0.0049 1.7E-07 73.7 5.9 64 988-1054 549-619 (986)
102 2iw3_A Elongation factor 3A; a 96.1 0.0042 1.4E-07 74.2 5.2 64 988-1054 902-972 (986)
103 2o5v_A DNA replication and rep 96.0 0.0027 9.2E-08 67.4 3.0 35 2-38 3-38 (359)
104 3vkg_A Dynein heavy chain, cyt 96.0 2 6.9E-05 58.4 29.8 47 177-223 2012-2058(3245)
105 4gp7_A Metallophosphoesterase; 95.6 0.0018 6.1E-08 61.2 -0.4 60 992-1051 94-169 (171)
106 3u1c_A Tropomyosin alpha-1 cha 95.1 1.1 3.8E-05 36.8 15.7 80 339-418 14-93 (101)
107 3u59_A Tropomyosin beta chain; 94.1 2 7E-05 35.3 15.6 64 339-402 14-77 (101)
108 2dfs_A Myosin-5A; myosin-V, in 93.8 9.8 0.00033 46.7 25.5 13 260-272 1025-1037(1080)
109 1ye8_A Protein THEP1, hypothet 93.7 0.039 1.4E-06 52.0 3.6 42 996-1040 96-139 (178)
110 3b85_A Phosphate starvation-in 93.0 0.06 2.1E-06 52.2 3.8 49 992-1046 115-163 (208)
111 3euj_A Chromosome partition pr 92.9 0.1 3.5E-06 57.4 5.8 50 1001-1055 416-465 (483)
112 3tnu_B Keratin, type II cytosk 92.7 3 0.0001 36.2 13.8 45 331-375 79-123 (129)
113 3thx_A DNA mismatch repair pro 92.3 0.12 4E-06 62.2 5.8 59 997-1055 739-799 (934)
114 3tnu_A Keratin, type I cytoske 92.3 2.2 7.5E-05 37.2 12.4 47 330-376 80-126 (131)
115 3ghg_A Fibrinogen alpha chain; 92.0 6.3 0.00022 41.9 17.2 103 763-869 60-163 (562)
116 3thx_B DNA mismatch repair pro 91.5 0.15 5.3E-06 61.0 5.5 55 997-1051 750-806 (918)
117 2npi_A Protein CLP1; CLP1-PCF1 91.0 0.11 3.9E-06 57.1 3.4 58 988-1049 236-313 (460)
118 3ec2_A DNA replication protein 90.7 0.2 6.7E-06 47.5 4.4 47 996-1042 97-144 (180)
119 1sxj_E Activator 1 40 kDa subu 90.3 0.24 8.3E-06 53.1 5.3 42 999-1042 134-175 (354)
120 2w0m_A SSO2452; RECA, SSPF, un 90.1 0.25 8.6E-06 49.2 4.9 54 1002-1055 126-191 (235)
121 1l8d_A DNA double-strand break 89.9 5 0.00017 33.9 12.1 46 273-319 11-56 (112)
122 2eqb_B RAB guanine nucleotide 89.7 6.6 0.00023 31.3 13.3 6 721-726 55-60 (97)
123 3oja_B Anopheles plasmodium-re 89.4 3 0.0001 48.2 14.1 12 416-427 556-567 (597)
124 4aby_A DNA repair protein RECN 88.8 0.076 2.6E-06 58.6 -0.1 34 3-38 38-72 (415)
125 1wb9_A DNA mismatch repair pro 88.6 0.28 9.5E-06 58.1 4.4 59 996-1054 683-743 (800)
126 1cr0_A DNA primase/helicase; R 88.2 0.43 1.5E-05 49.5 5.2 60 997-1056 145-235 (296)
127 2ehv_A Hypothetical protein PH 87.9 0.22 7.4E-06 50.3 2.5 59 997-1055 133-207 (251)
128 3swk_A Vimentin; cytoskeleton, 87.7 8.9 0.00031 30.3 11.0 63 783-845 16-78 (86)
129 3hnw_A Uncharacterized protein 87.5 8.1 0.00028 33.8 11.8 12 414-425 113-124 (138)
130 3ol1_A Vimentin; structural ge 87.3 13 0.00044 31.6 14.7 36 106-141 24-59 (119)
131 1znw_A Guanylate kinase, GMP k 86.9 0.086 3E-06 51.4 -1.1 55 998-1052 140-200 (207)
132 2cvh_A DNA repair and recombin 86.5 0.91 3.1E-05 44.5 6.2 59 999-1057 105-186 (220)
133 1ewq_A DNA mismatch repair pro 85.4 0.65 2.2E-05 54.6 5.1 48 997-1047 653-704 (765)
134 3swk_A Vimentin; cytoskeleton, 85.2 12 0.00042 29.5 11.5 25 408-432 53-77 (86)
135 2o8b_B DNA mismatch repair pro 84.2 0.81 2.8E-05 55.8 5.3 58 992-1049 861-921 (1022)
136 2kjq_A DNAA-related protein; s 84.1 0.8 2.8E-05 41.4 4.0 41 999-1040 83-124 (149)
137 3ibp_A Chromosome partition pr 81.1 45 0.0015 32.9 21.1 47 456-505 115-162 (302)
138 1tf7_A KAIC; homohexamer, hexa 80.8 0.83 2.8E-05 51.8 3.4 67 988-1055 354-442 (525)
139 3ghg_A Fibrinogen alpha chain; 79.8 42 0.0014 35.9 15.1 39 388-426 115-153 (562)
140 2pt7_A CAG-ALFA; ATPase, prote 78.6 1.2 4.2E-05 46.6 3.6 58 992-1057 233-291 (330)
141 2v4h_A NF-kappa-B essential mo 76.2 30 0.001 28.2 13.2 19 322-340 26-44 (110)
142 4a74_A DNA repair and recombin 71.2 2 6.9E-05 42.3 2.9 60 998-1057 124-201 (231)
143 1nlf_A Regulatory protein REPA 70.2 3.1 0.00011 42.5 4.1 47 998-1044 132-184 (279)
144 3mq7_A Bone marrow stromal ant 69.3 46 0.0016 27.3 13.8 22 342-363 33-54 (121)
145 4h22_A Leucine-rich repeat fli 67.4 47 0.0016 26.7 10.4 58 377-434 24-81 (103)
146 2i3b_A HCR-ntpase, human cance 67.4 4.6 0.00016 38.1 4.3 29 997-1025 103-133 (189)
147 4g1u_C Hemin import ATP-bindin 67.3 1.9 6.6E-05 43.4 1.7 11 28-38 39-49 (266)
148 1x8y_A Lamin A/C; structural p 67.2 44 0.0015 26.3 9.5 48 331-378 32-79 (86)
149 1b0u_A Histidine permease; ABC 67.0 1.8 6E-05 43.6 1.4 11 28-38 34-44 (262)
150 3a7p_A Autophagy protein 16; c 66.2 68 0.0023 28.1 12.3 59 372-430 71-129 (152)
151 2pcj_A ABC transporter, lipopr 65.8 1.7 5.9E-05 42.5 1.0 11 28-38 32-42 (224)
152 3mq9_A Bone marrow stromal ant 65.5 1.2E+02 0.0041 33.3 16.2 13 341-353 404-416 (471)
153 1m1j_B Fibrinogen beta chain; 63.1 1.7E+02 0.0057 31.5 15.6 9 212-220 180-188 (464)
154 3gfo_A Cobalt import ATP-bindi 61.9 2.8 9.5E-05 42.4 1.7 11 28-38 36-46 (275)
155 1m1j_A Fibrinogen alpha subuni 61.6 1.6E+02 0.0056 30.9 15.3 49 820-868 115-163 (491)
156 3euj_A Chromosome partition pr 61.1 3 0.0001 45.8 1.9 6 1010-1015 418-423 (483)
157 3ney_A 55 kDa erythrocyte memb 61.1 3.6 0.00012 38.9 2.2 15 566-580 110-125 (197)
158 4gkw_A Spindle assembly abnorm 60.4 72 0.0025 26.5 22.3 29 332-360 51-79 (167)
159 2eyu_A Twitching motility prot 59.3 6.9 0.00023 39.2 4.1 50 998-1054 97-146 (261)
160 1tf7_A KAIC; homohexamer, hexa 57.7 7.1 0.00024 44.0 4.3 56 999-1054 138-208 (525)
161 3nmd_A CGMP dependent protein 57.5 45 0.0015 24.9 6.9 17 704-720 45-61 (72)
162 1pzn_A RAD51, DNA repair and r 57.2 4.7 0.00016 42.5 2.6 45 998-1042 230-287 (349)
163 2olj_A Amino acid ABC transpor 56.7 3.7 0.00013 41.2 1.5 11 28-38 52-62 (263)
164 3mq9_A Bone marrow stromal ant 55.9 2.2E+02 0.0075 31.1 16.1 31 359-389 401-431 (471)
165 3i00_A HIP-I, huntingtin-inter 55.3 95 0.0032 26.2 10.3 20 624-643 16-35 (120)
166 1gk4_A Vimentin; intermediate 55.1 74 0.0025 24.9 11.7 49 330-378 29-77 (84)
167 1m1j_B Fibrinogen beta chain; 54.8 2.3E+02 0.0079 30.5 17.6 13 334-346 100-112 (464)
168 2i1j_A Moesin; FERM, coiled-co 51.7 35 0.0012 38.5 8.5 18 885-902 515-532 (575)
169 2z4s_A Chromosomal replication 51.0 17 0.00058 39.7 5.8 43 999-1041 194-237 (440)
170 1n0w_A DNA repair protein RAD5 50.5 13 0.00045 36.5 4.6 44 998-1041 118-174 (243)
171 1vec_A ATP-dependent RNA helic 50.0 14 0.00048 35.2 4.5 51 998-1049 145-197 (206)
172 3mq7_A Bone marrow stromal ant 49.8 1.1E+02 0.0037 25.2 14.9 22 825-846 73-94 (121)
173 2yyz_A Sugar ABC transporter, 49.1 5.6 0.00019 41.9 1.5 11 28-38 31-41 (359)
174 2it1_A 362AA long hypothetical 49.0 6.5 0.00022 41.5 1.9 11 28-38 31-41 (362)
175 3b9q_A Chloroplast SRP recepto 48.8 15 0.0005 37.7 4.6 52 988-1045 205-261 (302)
176 3jvv_A Twitching mobility prot 48.4 18 0.00063 38.0 5.3 56 992-1054 189-244 (356)
177 4gp7_A Metallophosphoesterase; 48.2 6.7 0.00023 36.2 1.7 11 28-38 11-21 (171)
178 1oxx_K GLCV, glucose, ABC tran 47.4 3.8 0.00013 43.2 -0.2 11 28-38 33-43 (353)
179 3rlf_A Maltose/maltodextrin im 47.1 6.3 0.00021 41.8 1.5 31 8-38 4-41 (381)
180 2ehv_A Hypothetical protein PH 46.3 9.9 0.00034 37.7 2.8 11 28-38 32-42 (251)
181 3iox_A AGI/II, PA; alpha helix 45.4 3.2E+02 0.011 29.4 14.8 35 192-226 72-106 (497)
182 2zqm_A Prefoldin beta subunit 44.3 1.4E+02 0.0048 24.9 13.5 14 414-427 87-100 (117)
183 3fvq_A Fe(3+) IONS import ATP- 44.0 7 0.00024 41.1 1.2 31 8-38 5-42 (359)
184 3bor_A Human initiation factor 43.9 9.6 0.00033 37.5 2.2 51 999-1050 173-225 (237)
185 1v43_A Sugar-binding transport 43.8 8.2 0.00028 40.9 1.8 31 8-38 12-49 (372)
186 3iuy_A Probable ATP-dependent 43.1 12 0.00042 36.4 2.9 49 999-1048 167-217 (228)
187 2i1j_A Moesin; FERM, coiled-co 42.6 29 0.001 39.1 6.1 15 913-927 515-529 (575)
188 1g29_1 MALK, maltose transport 42.6 6.9 0.00024 41.5 1.0 11 28-38 31-41 (372)
189 2zu0_C Probable ATP-dependent 42.0 8 0.00027 38.9 1.3 11 28-38 48-58 (267)
190 1q0u_A Bstdead; DEAD protein, 42.0 9.9 0.00034 36.8 2.0 52 998-1050 149-202 (219)
191 1njg_A DNA polymerase III subu 42.0 23 0.00078 34.6 4.8 40 1001-1042 128-167 (250)
192 3iv1_A Tumor susceptibility ge 41.3 1.2E+02 0.004 23.2 9.9 9 374-382 23-31 (78)
193 2ihy_A ABC transporter, ATP-bi 40.7 8.5 0.00029 39.0 1.2 11 28-38 49-59 (279)
194 2dr3_A UPF0273 protein PH0284; 40.3 30 0.001 33.9 5.4 58 999-1056 128-197 (247)
195 2gxq_A Heat resistant RNA depe 40.1 13 0.00046 35.3 2.6 51 999-1050 144-196 (207)
196 2ce7_A Cell division protein F 39.5 25 0.00086 38.6 4.8 54 992-1045 101-168 (476)
197 2a01_A Apolipoprotein A-I; fou 39.3 2.7E+02 0.0092 27.1 11.8 11 887-897 153-163 (243)
198 3szr_A Interferon-induced GTP- 39.1 27 0.00092 40.0 5.2 45 998-1042 145-197 (608)
199 1g5t_A COB(I)alamin adenosyltr 38.6 22 0.00075 33.4 3.6 55 998-1054 119-178 (196)
200 1qde_A EIF4A, translation init 38.5 17 0.00058 35.2 3.1 51 999-1050 155-207 (224)
201 3llm_A ATP-dependent RNA helic 38.2 26 0.00089 34.2 4.4 41 997-1038 174-215 (235)
202 3lda_A DNA repair protein RAD5 37.3 33 0.0011 36.7 5.2 42 999-1040 273-327 (400)
203 2og2_A Putative signal recogni 37.1 23 0.00079 37.2 3.9 51 992-1048 269-321 (359)
204 2eyu_A Twitching motility prot 37.0 12 0.00042 37.3 1.7 10 479-488 87-96 (261)
205 3l4q_C Phosphatidylinositol 3- 37.0 2.4E+02 0.0081 25.5 16.4 55 173-227 90-144 (170)
206 2ius_A DNA translocase FTSK; n 36.3 17 0.00058 40.2 2.8 43 999-1042 295-343 (512)
207 3fmo_B ATP-dependent RNA helic 36.1 13 0.00044 38.2 1.8 52 998-1050 234-288 (300)
208 2oxc_A Probable ATP-dependent 36.1 19 0.00063 35.2 2.9 51 999-1050 166-219 (230)
209 2onk_A Molybdate/tungstate ABC 35.0 14 0.00048 36.3 1.7 8 572-579 185-192 (240)
210 2chg_A Replication factor C sm 34.9 43 0.0015 31.9 5.4 42 999-1042 102-143 (226)
211 3mov_A Lamin-B1; LMNB1, B-type 34.8 1.8E+02 0.006 23.4 9.8 36 339-374 49-84 (95)
212 1tq4_A IIGP1, interferon-induc 34.7 6.5 0.00022 42.3 -0.8 53 1000-1052 185-249 (413)
213 3sop_A Neuronal-specific septi 34.7 19 0.00066 36.1 2.8 52 988-1045 99-154 (270)
214 2pl3_A Probable ATP-dependent 34.1 19 0.00064 35.3 2.6 50 999-1049 171-222 (236)
215 3fe2_A Probable ATP-dependent 34.1 15 0.00051 36.2 1.8 52 998-1050 175-228 (242)
216 1t6n_A Probable ATP-dependent 33.9 26 0.00089 33.7 3.5 50 999-1049 158-210 (220)
217 1m1j_A Fibrinogen alpha subuni 33.2 4.6E+02 0.016 27.7 17.0 20 992-1013 439-458 (491)
218 1fnn_A CDC6P, cell division co 33.1 23 0.00079 37.9 3.3 44 1001-1045 127-173 (389)
219 1z47_A CYSA, putative ABC-tran 32.4 16 0.00054 38.4 1.7 11 28-38 43-53 (355)
220 3ni0_A Bone marrow stromal ant 31.9 1.9E+02 0.0064 22.8 11.4 22 342-363 26-47 (99)
221 3l4q_C Phosphatidylinositol 3- 31.7 2.9E+02 0.0099 24.9 18.7 127 101-228 16-152 (170)
222 3s4r_A Vimentin; alpha-helix, 31.6 2E+02 0.0068 23.0 13.6 27 764-790 13-39 (93)
223 1gk4_A Vimentin; intermediate 31.5 1.8E+02 0.0063 22.6 11.6 17 625-641 3-19 (84)
224 3jvv_A Twitching mobility prot 31.4 17 0.00058 38.2 1.8 23 478-500 184-206 (356)
225 3ber_A Probable ATP-dependent 30.8 22 0.00075 35.2 2.4 51 998-1049 185-237 (249)
226 3dkp_A Probable ATP-dependent 30.6 27 0.00091 34.4 3.0 50 999-1048 175-229 (245)
227 3n70_A Transport activator; si 30.4 47 0.0016 29.3 4.4 41 999-1041 76-116 (145)
228 3ly5_A ATP-dependent RNA helic 29.6 25 0.00087 35.1 2.7 50 998-1048 200-251 (262)
229 3uux_B Mitochondrial division 29.4 3.8E+02 0.013 25.6 11.3 17 625-641 151-167 (242)
230 1p9r_A General secretion pathw 28.9 20 0.00067 38.7 1.8 19 479-497 225-243 (418)
231 3ec2_A DNA replication protein 28.8 18 0.00061 33.6 1.3 11 28-38 40-50 (180)
232 2r2a_A Uncharacterized protein 28.4 23 0.00077 33.6 1.9 46 999-1044 87-136 (199)
233 1sxj_D Activator 1 41 kDa subu 28.0 62 0.0021 33.8 5.6 39 1002-1042 136-174 (353)
234 3tul_A Cell invasion protein S 27.5 3E+02 0.01 23.7 10.7 23 811-833 71-93 (158)
235 3foz_A TRNA delta(2)-isopenten 27.5 22 0.00076 36.1 1.7 6 547-552 70-75 (316)
236 2xv5_A Lamin-A/C; structural p 27.5 2E+02 0.0069 21.8 7.8 47 332-378 10-56 (74)
237 3exa_A TRNA delta(2)-isopenten 27.4 22 0.00077 36.2 1.7 7 546-552 62-68 (322)
238 2q6q_A Spindle POLE BODY compo 26.4 1.9E+02 0.0064 21.0 9.0 51 117-167 11-61 (74)
239 2pjz_A Hypothetical protein ST 26.1 28 0.00094 34.8 2.1 7 505-511 167-173 (263)
240 2px0_A Flagellar biosynthesis 26.1 66 0.0023 32.7 5.0 54 996-1051 179-237 (296)
241 4a74_A DNA repair and recombin 25.8 23 0.0008 34.3 1.6 11 28-38 27-37 (231)
242 2qag_B Septin-6, protein NEDD5 25.7 16 0.00055 39.3 0.3 9 30-38 46-54 (427)
243 1z6g_A Guanylate kinase; struc 25.7 9.4 0.00032 37.0 -1.4 39 1013-1051 159-205 (218)
244 1l8q_A Chromosomal replication 25.7 57 0.0019 33.7 4.7 44 998-1041 97-141 (324)
245 4abx_A DNA repair protein RECN 25.6 3.8E+02 0.013 24.3 17.9 74 838-921 88-162 (175)
246 1s96_A Guanylate kinase, GMP k 25.4 44 0.0015 32.1 3.4 38 1000-1046 108-145 (219)
247 3syl_A Protein CBBX; photosynt 24.7 70 0.0024 32.6 5.1 41 999-1040 130-178 (309)
248 3s84_A Apolipoprotein A-IV; fo 24.6 5.2E+02 0.018 25.5 25.7 12 886-897 152-163 (273)
249 1x79_B RAB GTPase binding effe 24.6 3E+02 0.01 22.8 13.2 10 415-424 56-65 (112)
250 2bbw_A Adenylate kinase 4, AK4 24.4 27 0.00093 34.4 1.7 28 999-1026 164-195 (246)
251 1lw7_A Transcriptional regulat 24.4 38 0.0013 35.8 3.0 53 999-1051 277-339 (365)
252 3l51_A Structural maintenance 24.2 79 0.0027 28.5 4.7 40 462-505 95-134 (161)
253 3tui_C Methionine import ATP-b 23.8 28 0.00096 36.5 1.7 11 28-38 56-66 (366)
254 2xau_A PRE-mRNA-splicing facto 23.8 48 0.0017 39.2 4.0 45 997-1042 206-253 (773)
255 2qby_A CDC6 homolog 1, cell di 23.5 33 0.0011 36.5 2.3 45 1002-1046 131-178 (386)
256 3co5_A Putative two-component 23.5 93 0.0032 27.2 5.0 41 1000-1041 76-116 (143)
257 3ni0_A Bone marrow stromal ant 23.3 2.7E+02 0.0094 21.9 11.6 10 380-389 43-52 (99)
258 2bbw_A Adenylate kinase 4, AK4 23.3 32 0.0011 33.9 2.0 8 1000-1007 176-183 (246)
259 2ewv_A Twitching motility prot 23.2 29 0.00098 36.8 1.7 11 28-38 138-148 (372)
260 3gd7_A Fusion complex of cysti 22.5 28 0.00096 37.0 1.5 11 28-38 49-59 (390)
261 3j21_5 50S ribosomal protein L 22.5 67 0.0023 25.0 3.2 36 3-38 4-42 (83)
262 1jr3_A DNA polymerase III subu 22.2 74 0.0025 33.5 4.8 40 1001-1042 121-160 (373)
263 2j0s_A ATP-dependent RNA helic 22.1 52 0.0018 35.3 3.6 49 999-1048 179-229 (410)
264 2jeo_A Uridine-cytidine kinase 22.1 58 0.002 31.9 3.7 34 997-1040 131-164 (245)
265 3u61_B DNA polymerase accessor 21.9 67 0.0023 33.1 4.3 42 1000-1042 106-147 (324)
266 1a5t_A Delta prime, HOLB; zinc 21.8 64 0.0022 33.5 4.1 41 1000-1042 109-149 (334)
267 3iox_A AGI/II, PA; alpha helix 21.7 7.7E+02 0.026 26.5 17.0 38 825-862 68-105 (497)
268 2dpy_A FLII, flagellum-specifi 21.6 30 0.001 37.6 1.5 58 988-1054 259-329 (438)
269 4b4t_J 26S protease regulatory 21.6 78 0.0027 33.6 4.6 53 992-1045 234-301 (405)
270 2gno_A DNA polymerase III, gam 21.5 62 0.0021 33.0 3.8 39 1001-1041 84-122 (305)
271 4b4t_L 26S protease subunit RP 20.9 93 0.0032 33.5 5.1 54 992-1046 267-335 (437)
272 3d31_A Sulfate/molybdate ABC t 20.9 25 0.00087 36.7 0.7 11 28-38 28-38 (348)
273 1wle_A Seryl-tRNA synthetase; 20.5 5.3E+02 0.018 28.2 11.0 11 1017-1027 440-451 (501)
274 1gqe_A Release factor 2, RF2; 20.1 7.3E+02 0.025 25.6 17.4 19 1047-1065 185-203 (365)
275 3aez_A Pantothenate kinase; tr 20.0 37 0.0013 34.8 1.7 11 28-38 92-102 (312)
No 1
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.86 E-value=4e-22 Score=187.67 Aligned_cols=123 Identities=32% Similarity=0.499 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc-cccCCCceeeccCCCCCCcc-----------c-----h-hhh---h-------hhh
Q psy16118 943 KKERYDKFTRCFEHVSNEIDGAG-SESVLPRPFLGPENPEEPLT-----------Y-----R-VST---T-------IVS 994 (1070)
Q Consensus 943 ~~~~~~~f~~~~~~i~~~~~~~f-~~~~~~~~~l~~~~~~~~~~-----------~-----r-LSG---t-------~al 994 (1070)
+.++.+.|..+|+.|+.+|..+| .+++||.+.+.+.++.+++. . . ||| + ||+
T Consensus 2 ~~~~~~~f~~~f~~i~~~f~~~f~~L~~~g~~~l~l~~~~~~~~~gl~i~~~~~~~~~~~~~~LSgGekqr~ala~~la~ 81 (173)
T 3kta_B 2 EKEKKNVFMRTFEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAI 81 (173)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCSSSGGGSCEEEEEETTSSSCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeeCCCCccccCceEEecCCCccccccccCCHHHHHHHHHHHHHHh
Confidence 45788899999999999999999 78899999998888877651 0 1 999 2 666
Q ss_pred ccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccceeeeccc
Q psy16118 995 HRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTISSICFGH 1067 (1070)
Q Consensus 995 ~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~v~~~~ 1067 (1070)
+.+.|+|||||||++++||..|+.+|.++|+.++ ...|||||||+..++..||.+|||+| ++|+|+|+...
T Consensus 82 ~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~-~~~~~ivith~~~~~~~ad~i~~v~~-~~g~s~~~~~~ 152 (173)
T 3kta_B 82 QKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS-KESQFIVITLRDVMMANADKIIGVSM-RDGVSKVVSLS 152 (173)
T ss_dssp HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTTCSEEEEEEE-ETTEEEEEECC
T ss_pred cccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc-cCCEEEEEEecHHHHHhCCEEEEEEe-cCCEEEEEEEE
Confidence 6678999999999999999999999999999997 88999999999999999999999999 68999998643
No 2
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=99.77 E-value=2.8e-19 Score=179.72 Aligned_cols=183 Identities=52% Similarity=0.962 Sum_probs=137.9
Q ss_pred HHHHHHHHHHhcCC-cceecccccccchhhHHHHHHHHhccCCCeEEeCCHHHHHHHHHHHhhcCCCCcceecCCCccCC
Q psy16118 450 KQELVENFKKAYSG-VYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTK 528 (1070)
Q Consensus 450 ~~~~~~~l~~~~~~-~~g~~~~~~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 528 (1070)
+..++..++..++| ++|++.+++.+.+++|..||+++||+.++++||++..++..++.+|+....|+++|+|++.+...
T Consensus 40 ~~~~~~~l~~~~~g~v~G~l~dli~v~~~~ye~Ave~aLG~~l~~iVV~~~~~a~~~i~~Lk~~~~Gr~tflpl~~i~~~ 119 (233)
T 2wd5_A 40 KAEIMESIKRLYPGSVYGRLIDLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVK 119 (233)
T ss_dssp CHHHHHHHHHHSGGGEEEEHHHHEEESSGGGHHHHHHHHGGGGSCEEESCHHHHHHHHHHHHHTTCCCEEEEETTTCCCC
T ss_pred HHHHHHHHHHhCCCCeeeeHHHhceeCcHHHHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcCCCCeEEEECcccccC
Confidence 35667777778899 99999999975568999999999999999999999999999999999999999999999876432
Q ss_pred cchhhhhccCCCCCcceeeeeeccCcchHHHHHHHHhCCeEecCChHHHHhhhcccCCCccceEEeeCceeEecCccccc
Q psy16118 529 PLKERLRNIRDPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALDGTFYQKSGIMSG 608 (1070)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 608 (1070)
..+..++ .++++.++.++|.++++.+.+++.+++|++++|++++.|..+++.. +..+++||++|+++.++|.++|
T Consensus 120 ~~~~~~~---~~~g~~~l~dlV~~~~~~~~~~~~~~Lg~~~vv~dl~~A~~l~~~~--~~~~r~VTldG~~~~~~G~~tG 194 (233)
T 2wd5_A 120 PTDEKLR---ELKGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGG--HQRHKTVALDGTLFQKSGVISG 194 (233)
T ss_dssp CCCGGGG---GCSSCEESGGGEEESSGGGHHHHHHHTTTCEEESSHHHHHHHHHSS--SSCCCEEETTCCEECTTSCEEE
T ss_pred Ccchhcc---CCCCchHHHHhhhCCcHHHHHHHHHHhCCEEEECCHHHHHHHHHhc--CCCceEEecCCEEEeCCeeEeC
Confidence 2211111 1245567889999944789999999999999999999999888654 3346799999999999999999
Q ss_pred CCcccccccccCCHHHHHHHHHHHHHHHH
Q psy16118 609 GSLDLARKAKRWDDKEMGNLKAQKEKLSE 637 (1070)
Q Consensus 609 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~~ 637 (1070)
|+.........|+.+++..|..+.+.+..
T Consensus 195 G~~~~~~~~~~~~~~e~~~l~~~~~~l~~ 223 (233)
T 2wd5_A 195 GASDLKAKARRWDEKAVDKLKEKKGRLTE 223 (233)
T ss_dssp CHHHHHHHTTHHHHHHTTTCC--------
T ss_pred CCchhhhhhhhccHHHHHHHHHHHHHHHH
Confidence 87543333334554455554444444433
No 3
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=99.76 E-value=2.9e-18 Score=160.63 Aligned_cols=146 Identities=32% Similarity=0.602 Sum_probs=124.1
Q ss_pred hcCCcceecccccccchhhHHHHHHHHhccCCCeEEeCCHHHHHHHHHHHhhcCCCCcceecCCCccCCcchhhhhccCC
Q psy16118 460 AYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTKPLKERLRNIRD 539 (1070)
Q Consensus 460 ~~~~~~g~~~~~~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (1070)
.++|++|++.+++. ++++|..||++++| .++++||++...+..++++|++.+.|+++|+|++.+.....+ .+....
T Consensus 15 ~~~Gv~G~v~dLi~-v~~~y~~Aie~alg-~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpL~~i~~~~~~--~~~~~~ 90 (166)
T 3l51_B 15 RIPGIYGRLGDLGA-IDEKYDIAISSCCH-ALDYIVVDSIDTAQECVNFLKKHNIGIATFIGLDKMTVWAKK--MSKIQT 90 (166)
T ss_dssp SSTTEEEEGGGSCB-CCGGGHHHHHHHCG-GGGSEEESCHHHHHHHHHHHHHTTCCCCCEEEGGGTGGGTTS--CCCCCC
T ss_pred CCCCceEEHHHhee-eCHHHHHHHHHHHh-hCceEEECCHHHHHHHHHHHHHcCCCeEEEEECccccccccc--cccccc
Confidence 57899999999997 67899999999998 899999999999999999999999999999999887643211 111112
Q ss_pred CCCcceeeeeeccCcchHHHHHHHHhCCeEecCChHHHHhhhcccCCCccceEEeeCceeEecCcccccCCc
Q psy16118 540 PKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALDGTFYQKSGIMSGGSL 611 (1070)
Q Consensus 540 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~~~ 611 (1070)
|++..++.++|+++++.+.+++.+++|++++|++++.|..+++.. ..++++||++|+++.++|.|+||+.
T Consensus 91 ~~~~~~a~dlv~~~d~~~~~a~~~llg~tlVv~dl~~A~~~~~~~--~~~~r~VTldGdli~~~G~~tGG~~ 160 (166)
T 3l51_B 91 PENTPRLFDLVKVKNEEIRQAFYFALRDTLVANNLDQATRVAYQR--DRRWRVVTLQGQIIEQSGTMSGGLE 160 (166)
T ss_dssp GGGCCBHHHHCBCSCHHHHHHHHHHHTTCEEESSHHHHHHHHBCS--SCBCCEEETTSCEECTTCCEEECCG
T ss_pred ccchhhHhheeeCCcHHHHHHHHHHcCCEEEECCHHHHHHHHHhh--CCCcEEEECCCEEEeCCEEEECCCc
Confidence 345567889999964799999999999999999999999888754 3457899999999999999999984
No 4
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.68 E-value=2.3e-17 Score=184.43 Aligned_cols=162 Identities=35% Similarity=0.500 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccc-----C----CCce
Q psy16118 904 NLRAMEKLEHAKENLMKTNEEFENARKRAKKAKANFDRIKKERYDKFTRCFEHVSNEIDGAG-SES-----V----LPRP 973 (1070)
Q Consensus 904 n~~a~~e~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~~i~~~~~~~f-~~~-----~----~~~~ 973 (1070)
+..+.++|+.+..+|..+..++.++......+...+..+...+...|..+|..|+..|..+| .++ + +|.+
T Consensus 223 ~~~a~ee~e~l~e~l~~l~~~l~~~r~~~~~l~~~i~~L~~~r~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~ 302 (430)
T 1w1w_A 223 QGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNA 302 (430)
T ss_dssp -------------------------------------------------CHHHHHHHHHHHHHHTC-----------CEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccCCCceE
Confidence 34466788888899999999988888888888888999999998999999999999999888 322 1 7888
Q ss_pred eeccCCCCCCc----c---------c---h-hhh---h-------hhhccccCCCeEEeecccccCChhhHHHHHHHHHH
Q psy16118 974 FLGPENPEEPL----T---------Y---R-VST---T-------IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVT 1026 (1070)
Q Consensus 974 ~l~~~~~~~~~----~---------~---r-LSG---t-------~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~ 1026 (1070)
.+.+.|+.+++ . + . ||| + ||++.+.|+||++|||++++||..++..++.+|..
T Consensus 303 ~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~ 382 (430)
T 1w1w_A 303 SLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRR 382 (430)
T ss_dssp EEC------------CEEEECTTCCCCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred EEEecCCCCcccCceEEEEECCCccccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHH
Confidence 88876654443 1 1 1 899 1 66666689999999999999999999999999999
Q ss_pred hcCCCceEEEEecCcchHhhcchheeeccC-Cccceeeec
Q psy16118 1027 KTQDSLQTIVISLKEEFFSHADSLVGICPG-SVTISSICF 1065 (1070)
Q Consensus 1027 ~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~-~~gvs~v~~ 1065 (1070)
+...+.|||||||++.++..||.+|||+|. ++|||+|+.
T Consensus 383 ~~~~~~~~ii~th~~~~~~~~d~~~~~~~~~~~~~s~~~~ 422 (430)
T 1w1w_A 383 HRNPDLQFIVISLKNTMFEKSDALVGVYRQQQENSSKIIT 422 (430)
T ss_dssp HCBTTBEEEEECSCHHHHTTCSEEEEEEEETTTTEEEEEE
T ss_pred HhcCCCEEEEEECCHHHHHhCCEEEEEEEeCCCCeeEEEE
Confidence 863468999999999999999999999996 679999875
No 5
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}
Probab=99.67 E-value=1.3e-16 Score=151.24 Aligned_cols=137 Identities=28% Similarity=0.579 Sum_probs=119.0
Q ss_pred hcCCcceecccccccchhh-HHHHHHHHhccCCCeEEeCCHHHHHHHHHHHhhcCCCCcceecCCCccCCcchhhhhccC
Q psy16118 460 AYSGVYDRMINMCHPVHKR-YNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTKPLKERLRNIR 538 (1070)
Q Consensus 460 ~~~~~~g~~~~~~~~~~~~-~~~aie~~l~~~l~~~vv~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (1070)
.++|++|++.+++. +++. |..||++++|+.++++||++...+..++++|+..+.|+++|+|++.+..+. ++
T Consensus 32 ~~~gv~G~l~dLi~-V~~~kye~Ave~aLG~~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpl~~i~~~~-------~~ 103 (189)
T 3nwc_A 32 GIGGIYGTLAELIK-VKDEAYALAIEVALGNRADNVVVEDELVAEKAIKYLKEHKLGRLTFLPLNKIKPKH-------VD 103 (189)
T ss_dssp CCCSEEEEHHHHCE-ESCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHTTCCCCCEEETTTCCCCC-------CC
T ss_pred CCCCceEEHHHhee-eChhhHHHHHHHHhccccccEEECCHHHHHHHHHHHHhcCCCceEEEECCcccccc-------CC
Confidence 47899999999998 5566 999999999999999999999999999999999999999999999876532 22
Q ss_pred CCCCcceeeeeeccCcchHHHHHHHHhCCeEecCChHHHHhhhcccCCCccceEEeeCceeEecCcccccCCcc
Q psy16118 539 DPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALDGTFYQKSGIMSGGSLD 612 (1070)
Q Consensus 539 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~~~~ 612 (1070)
.++++. ++++|.++ +.+.+++.+++|++++|++++.|..+. + ++++||++|+++.++|.++||+..
T Consensus 104 ~~~g~~-a~dlv~~d-~~~~~a~~~llg~tlvv~dl~~A~~l~-----~-~~r~VTldGd~i~~~G~~tGG~~~ 169 (189)
T 3nwc_A 104 SSVGLP-AVDVIEYD-QKIENAVKFALGDTVIVNSMEEARPHI-----G-KVRMVTIEGELYERSGAITGGHFR 169 (189)
T ss_dssp SCSSEE-GGGGEECC-GGGHHHHHHHHTTEEEESCSGGGGGGT-----T-TSEEEETTSCEECTTSCEECSCSS
T ss_pred CCCCcE-EeeeeccC-HHHHHHHHHHhCCEEEECCHHHHHHHh-----C-CCeEEeCCCcEEECCEEEEeCCCC
Confidence 234555 88999998 799999999999999999999998772 1 467999999999999999999753
No 6
>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}
Probab=99.66 E-value=1.5e-16 Score=148.65 Aligned_cols=143 Identities=22% Similarity=0.402 Sum_probs=114.2
Q ss_pred CCcceecccccccchhhHHHHHHHHhccCCCeEEeCCHHHHHHHHHHHhhcCCCCcceecCCCccCCcchhhh----hcc
Q psy16118 462 SGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTKPLKERL----RNI 537 (1070)
Q Consensus 462 ~~~~g~~~~~~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 537 (1070)
+|++|.+.+++.+.+++|..||++++|+.++++||++...+..+++++ +..|+++|+|++.+.....+... ...
T Consensus 15 ~gv~G~v~dLi~v~d~~y~~Ave~alG~~l~~iVVd~~~~A~~~i~~~--~~~GR~tflpL~~i~~~~~~~~~~~~~~~~ 92 (161)
T 3l51_A 15 NSVKGLVASLINVKDNSTATALEVVAGERLYNVVVDTEVTAKKLLEKG--ELKRRYTIIPLNKISARCIAPETLRVAQNL 92 (161)
T ss_dssp GGEEEEGGGSCEESCGGGHHHHHHHHGGGGGCEEESCHHHHHHHHHHS--CCSSCEEEEETTTCCCCCCCHHHHHHHHHH
T ss_pred CccEEEHHHheeeCchhHHHHHHHHhccccceEEECCHHHHHHHHHHH--hhCCcEEEEECccccccCcCHHHHhhhhhc
Confidence 478999999998335799999999999999999999999999999986 45799999999988764432111 111
Q ss_pred CCCCCcceeeeeeccCcchHHHHHHHHhCCeEecCChHHHHhhhcccCCCccceEEeeCceeEecCcccccC
Q psy16118 538 RDPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALDGTFYQKSGIMSGG 609 (1070)
Q Consensus 538 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~ 609 (1070)
..++++.++.++|+++ +.+++++.+++|++++|++++.|..+++.. +.++++||++|++++++|.|+||
T Consensus 93 ~~~~~~~~a~dlv~~d-~~~~~a~~~llg~tlv~~dl~~A~~~~~~~--~~~~r~VTldGd~i~~~G~~tGG 161 (161)
T 3l51_A 93 VGPDNVHVALSLVDYK-PELQKGMEFVFGTTFVCNNMDNAKKVAFDK--RIMTRTVTLGGDVFDPHGTLSGG 161 (161)
T ss_dssp HCTTSEEEGGGGEECC-GGGHHHHHHHHTTCEEESSHHHHHHHHHCT--TTCCCEEETTSCEECCC------
T ss_pred CCCcchhHHHHHhcCC-HHHHHHHHHHcCCEEEECCHHHHHHHHHhc--CCCCeEEeCCCeEEcCCEEEecC
Confidence 1245677899999999 799999999999999999999999888754 34578999999999999999986
No 7
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=99.62 E-value=3.8e-15 Score=148.36 Aligned_cols=151 Identities=17% Similarity=0.338 Sum_probs=124.1
Q ss_pred HHHHHHHHHH------hcCCcceecccccccchhhHHHHHHHHhccCCCeEEeCCHHHHHHHHHHHhhcC-CCCcceecC
Q psy16118 450 KQELVENFKK------AYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQ-LDPETFLPI 522 (1070)
Q Consensus 450 ~~~~~~~l~~------~~~~~~g~~~~~~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~~~~~L~~~~-~~~~~~~~~ 522 (1070)
+..+++.+.. .++|++|++.+++. ++++|..||++++|+.++++||++..++..++.+|+... .|+++|+|+
T Consensus 29 ~~~~~~~l~~~~~~~~~~~g~~g~l~dli~-v~~~~e~Ave~aLG~~l~~iVV~~~~~a~~~i~~l~~~~~~gr~tflpl 107 (213)
T 2wd5_B 29 INKVLEHFRRKGINQHVQNGYHGIVMNNFE-CEPAFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPL 107 (213)
T ss_dssp HHHHHHHHHHHTCCHHHHTTEEEEGGGSEE-CCGGGHHHHHHHHTTGGGCEEESCHHHHHHHHHHHHHTTCCCCEEEEET
T ss_pred HHHHHHHHHhhhhhhccCCCceeeHHHhcc-cCHHHHHHHHHHHhHHhhEEEECCHHHHHHHHHHHHhCCCCcceEEEEC
Confidence 4566666654 47899999999998 588999999999999999999999999999999999887 899999998
Q ss_pred CCccCCcchhhhhccCCCCCcceeeeeeccCcchHHHHHHHHhCCeEecCChHHHHhhhcccCCCccceEEeeCceeEec
Q psy16118 523 DYLQTKPLKERLRNIRDPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALDGTFYQK 602 (1070)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~tl~~~~~~~ 602 (1070)
+.+...... .+..+++.++.++|.++ +.+.+.+.+++|++++|++++.|..+.... .+++||++|+++.+
T Consensus 108 ~~~~~~~~~-----~~~~~~~~~l~~~v~~~-~~~~~~~~~~l~~~~vv~~l~~A~~l~~~~----~~~~VTldG~~~~~ 177 (213)
T 2wd5_B 108 NKLDVRDTA-----YPETNDAIPMISKLRYN-PRFDKAFKHVFGKTLICRSMEVSTQLARAF----TMDCITLEGDQVSH 177 (213)
T ss_dssp TTCCCCCCC-----CCCCSSEEEGGGGCEEC-GGGHHHHHHHHTTEEEESSHHHHHHHHHHS----SCEEECTTCCEECT
T ss_pred cccCcccCC-----CCCCCCceeHHHHccCc-HHHHHHHHHHcCCEEEECCHHHHHHHHHhc----CceEEeCCCcEECC
Confidence 876543210 01113455567889998 678999999999999999999998887532 36799999999999
Q ss_pred CcccccCCc
Q psy16118 603 SGIMSGGSL 611 (1070)
Q Consensus 603 ~~~~~~~~~ 611 (1070)
.|.++||..
T Consensus 178 ~G~~tgG~~ 186 (213)
T 2wd5_B 178 RGALTGGYY 186 (213)
T ss_dssp TSCEEECCC
T ss_pred CeEEECCCC
Confidence 999999874
No 8
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=99.52 E-value=5.4e-14 Score=140.83 Aligned_cols=146 Identities=24% Similarity=0.456 Sum_probs=118.9
Q ss_pred hcCCcceecccccccchhhHHHHHHHHhccCCCeEEeCCHHHHHHHHHHHhhcCCCCcceecCCCccCCcchhhhhccCC
Q psy16118 460 AYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTKPLKERLRNIRD 539 (1070)
Q Consensus 460 ~~~~~~g~~~~~~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (1070)
.++|++|.+.+++. ++++|..||+++||+.++++||++..++..++.+|+....|+++|+|++.+.... .. ...+..
T Consensus 40 ~~~g~~g~l~~li~-v~~~~e~Ave~aLg~~l~~ivv~~~~~a~~~i~~lk~~~~gr~~~lpl~~~~~~~-~~-~~~~~~ 116 (213)
T 1gxl_A 40 RFPGLVDVVSNLIE-VDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSF-NR-ISGLEN 116 (213)
T ss_dssp SCTTEEEEGGGTCB-CCHHHHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCEEEEEEETTTSCCCC-CC-CTTGGG
T ss_pred hhCCCceehhheee-eCHHHHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcCCCceEEEEchhcCCCC-cc-chhhhc
Confidence 36788999999998 5889999999999999999999999999999999999999999999988765432 10 000011
Q ss_pred CCCc-ceeeeeeccCcchHHHHHHHHhCCeEecCChHHHHhhhcccCCCccceEEeeCceeEecCcccccCCc
Q psy16118 540 PKNV-KLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALDGTFYQKSGIMSGGSL 611 (1070)
Q Consensus 540 ~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~~~ 611 (1070)
++++ +++.++|.++ +.+.+.+.+++|++++|++++.|..+.... ...+++||++|+++.+.|.++||+.
T Consensus 117 ~~g~~~~~~d~v~~~-~~~~~~~~~~lg~~~vv~~l~~A~~~~~~~--~~~~~~VT~~G~~~~~~G~~~gg~~ 186 (213)
T 1gxl_A 117 ERGFVGYAVDLVKFP-SDLEVLGGFLFGNSVVVETLDDAIRMKKKY--RLNTRIATLDGELISGRGAITGGRE 186 (213)
T ss_dssp STTEEEEGGGGCBCC-STTHHHHHHHSSSEEEESSHHHHHHHHHHT--CSSCEEECTTSCEECTTSCEEECCC
T ss_pred CCCcHHHHHHHhcCC-HHHHHHHHHHhCCEEEECCHHHHHHHHHhc--CCCceEEecCCeEEcCCceEECCCC
Confidence 2333 4677999998 578999999999999999999998887653 2346799999999999999998874
No 9
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Probab=99.44 E-value=1.3e-13 Score=134.22 Aligned_cols=146 Identities=25% Similarity=0.463 Sum_probs=119.2
Q ss_pred hcCCcceecccccccchhhHHHHHHHHhccCCCeEEeCCHHHHHHHHHHHhhcCCCCcceecCCCccCCcchhhhhccCC
Q psy16118 460 AYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTKPLKERLRNIRD 539 (1070)
Q Consensus 460 ~~~~~~g~~~~~~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (1070)
.++|++|.+.+++. +++.|..||++++|..++++||++...+..++++|+....|+++|+|++.+.... .. ...+..
T Consensus 28 ~~~g~~g~l~~li~-v~~~~e~Ave~aLG~~l~~ivv~~~~~a~~~i~~lk~~~~gr~tflpl~~~~~~~-~~-~~~~~~ 104 (186)
T 1gxj_A 28 RFPGLVDVVSNLIE-VDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSF-NR-ISGLEN 104 (186)
T ss_dssp GCTTEEEEHHHHCB-CCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCCCEEEEETTTCCCCC-CC-CTTGGG
T ss_pred hhCCcceehhheec-cCHHHHHHHHHHHHHhhhEEEECCHHHHHHHHHHHHhcCCCceEEEEccccCCCc-cc-chhccc
Confidence 36789999999997 6889999999999999999999999999999999999999999999998765432 10 000111
Q ss_pred CCC-cceeeeeeccCcchHHHHHHHHhCCeEecCChHHHHhhhcccCCCccceEEeeCceeEecCcccccCCc
Q psy16118 540 PKN-VKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALDGTFYQKSGIMSGGSL 611 (1070)
Q Consensus 540 ~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~~~ 611 (1070)
+.+ ..++.++|.++ +.+.+.+.+++|++++|++++.|..+.... ...+++||++|+++.+.|.++||..
T Consensus 105 ~~g~~~~~~dlv~~~-~~~~~~~~~~lg~~~v~~~l~~A~~l~~~~--~~~~~~VTldG~~~~~~G~~~gG~~ 174 (186)
T 1gxj_A 105 ERGFVGYAVDLVKFP-SDLEVLGGFLFGNSVVVETLDDAIRMKKKY--RLNTRIATLDGELISGRGAITGGRE 174 (186)
T ss_dssp STTEEEEHHHHCBCC-GGGHHHHHHHHTTCEEESCHHHHHHHHHHH--TCCSCEEETTSCEECTTSCEEEEEC
T ss_pred CCCchHHHHHHccCC-HHHHHHHHHHcCCEEEECCHHHHHHHHHhc--CCCceEEeCCCeEEcCCEEEECCCC
Confidence 223 34567999998 689999999999999999999998887653 2346799999999999999998863
No 10
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.15 E-value=4.4e-09 Score=120.07 Aligned_cols=68 Identities=22% Similarity=0.244 Sum_probs=61.2
Q ss_pred h-hh---h---hhhccccCC--CeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccC
Q psy16118 988 V-ST---T---IVSHRYHPA--PFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPG 1056 (1070)
Q Consensus 988 L-SG---t---~al~~~~~~--Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~ 1056 (1070)
| || . +|.+...+. |++||||+|++||..++..++++|..++ .+.|||||||.+.++..||.+|.|.++
T Consensus 397 l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~-~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 397 VASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHH-HHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 6 99 2 666656666 9999999999999999999999999998 689999999999999999999999874
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.02 E-value=1.2e-09 Score=136.47 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 110 DIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQ 146 (1070)
Q Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 146 (1070)
++..+..++..++..+..+...+.++...+..+..+.
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~ 894 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEK 894 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443333
No 12
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.87 E-value=2.2e-09 Score=134.31 Aligned_cols=44 Identities=27% Similarity=0.449 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 115 EDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQ 158 (1070)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (1070)
..++..+..++..++..+..+...+..+...+..+..+...+..
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~ 899 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQE 899 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555444444444444433
No 13
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.81 E-value=6e-09 Score=111.08 Aligned_cols=68 Identities=31% Similarity=0.449 Sum_probs=63.1
Q ss_pred ccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccceeeecc
Q psy16118 997 YHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTISSICFG 1066 (1070)
Q Consensus 997 ~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~v~~~ 1066 (1070)
+.|+|+++|||++++||..++..+..+|..++ .+.|+|+|||++.++..||.++||+|. .|.|+|+..
T Consensus 239 ~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~~~~~~d~~~~v~~~-~g~s~~~~~ 306 (322)
T 1e69_A 239 IKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKIVMEAADLLHGVTMV-NGVSAIVPV 306 (322)
T ss_dssp TSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTTGGGGCSEEEEEEES-SSCEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHHHHhhCceEEEEEEe-CCEEEEEEE
Confidence 47899999999999999999999999999997 788999999999999999999999996 599998754
No 14
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.62 E-value=4.3e-07 Score=98.81 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=59.3
Q ss_pred ccC-CCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccceeee
Q psy16118 997 YHP-APFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTISSIC 1064 (1070)
Q Consensus 997 ~~~-~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~v~ 1064 (1070)
..+ .|+++|||++++||+..+..+.++|..+. ...|+|||||.+.+...||.+|-|.+. +|+|+|-
T Consensus 302 ~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~~~~~~d~~~~l~k~-~~~s~v~ 368 (371)
T 3auy_A 302 IGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRELEDVADVIINVKKD-GNVSKVK 368 (371)
T ss_dssp HSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGGGGGGCSEEEEEEES-SSCEEEE
T ss_pred hcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHHHHhhCCEEEEEEec-CCeEEEE
Confidence 456 89999999999999999999999999986 667999999999999999999999874 6888764
No 15
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.61 E-value=3.6e-07 Score=102.00 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=60.6
Q ss_pred hhh---h---hhhccccCC--CeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeecc
Q psy16118 988 VST---T---IVSHRYHPA--PFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICP 1055 (1070)
Q Consensus 988 LSG---t---~al~~~~~~--Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~ 1055 (1070)
||| . +|.+...+. |++||||++++||...+..+.++|+.++ .+.|+|||||.+.++..||.+|-|.+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~~~d~i~~l~k 370 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAARAHHHYKVEK 370 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHhhcCeEEEEEE
Confidence 699 2 666666677 9999999999999999999999999997 78999999999999999999998865
No 16
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.60 E-value=5.4e-08 Score=88.77 Aligned_cols=69 Identities=22% Similarity=0.208 Sum_probs=60.1
Q ss_pred cccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccceeeec
Q psy16118 996 RYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTISSICF 1065 (1070)
Q Consensus 996 ~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~v~~ 1065 (1070)
...+.|+++|||++++||..++..+.++|..+...+..+|+|||...+...||..+.+.+ .+|+|+|.+
T Consensus 78 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ii~l~~-~~g~s~~~~ 146 (148)
T 1f2t_B 78 LAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISL-ENGSSKVEV 146 (148)
T ss_dssp HHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEEE-ETTEEEEEE
T ss_pred HcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEEEEEEc-CCCeEEEEe
Confidence 346789999999999999999999999999985246799999999998999999988775 579998765
No 17
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.45 E-value=2e-07 Score=99.93 Aligned_cols=73 Identities=21% Similarity=0.180 Sum_probs=62.2
Q ss_pred hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccceeeec
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTISSICF 1065 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~v~~ 1065 (1070)
+|.....+.|+++|||++++||...+..+..+|..+.....|+|+|||.+.++..||.++.+.+. +|.|+|.+
T Consensus 265 ~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l~~~-~g~s~v~~ 337 (339)
T 3qkt_A 265 MSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLE-NGSSKVEV 337 (339)
T ss_dssp HHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEEEE-TTEEEEEE
T ss_pred HHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEEEec-CCccEEEE
Confidence 33344567889999999999999999999999999753557999999999999999999999874 68888753
No 18
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.21 E-value=2.7e-07 Score=100.43 Aligned_cols=36 Identities=50% Similarity=0.689 Sum_probs=33.4
Q ss_pred CCCccccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 1 MSPILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 1 ~~m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
|||+|.+|+|.||++|.+ .+| +|++ +|+|+||||||
T Consensus 1 m~M~l~~L~l~nFr~~~~-~~i-~f~~gl~vi~G~NGaG 37 (371)
T 3auy_A 1 MSMILKEIRMNNFKSHVN-SRI-KFEKGIVAIIGENGSG 37 (371)
T ss_dssp CCEEEEEEEEEEETTEEE-EEE-ECCSEEEEEEECTTSS
T ss_pred CCcEEeEEEEEccccccc-eEE-ecCCCeEEEECCCCCC
Confidence 999999999999999964 677 8987 99999999999
No 19
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.12 E-value=8.6e-07 Score=81.61 Aligned_cols=34 Identities=35% Similarity=0.577 Sum_probs=31.4
Q ss_pred CccccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
|+|.+|+|.||+||.+ .+| +|.+ +|+|+||||||
T Consensus 1 M~i~~l~i~nf~~~~~-~~i-~f~~g~~~I~G~NGsG 35 (149)
T 1f2t_A 1 MKLERVTVKNFRSHSD-TVV-EFKEGINLIIGQNGSG 35 (149)
T ss_dssp CEEEEEEEESBTTBSS-EEE-ECCSEEEEEECCTTSS
T ss_pred CEEEEEEEeCcccCcc-eEE-EcCCCeEEEECCCCCC
Confidence 8999999999999987 467 8987 99999999999
No 20
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.92 E-value=1.1e-05 Score=81.47 Aligned_cols=66 Identities=17% Similarity=0.208 Sum_probs=58.7
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..+.++|.++. .+.=+|+|||+..++..||.++-+.
T Consensus 146 LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~~d~v~~l~ 217 (247)
T 2ff7_A 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKNADRIIVME 217 (247)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTTSSEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEE
Confidence 899 17777788999999999999999999999999999996 7788999999999998999876554
No 21
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.90 E-value=9.9e-06 Score=80.50 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=57.9
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..+.++|.++...+.-+|+|||+...+..||.++-+.
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~ 213 (224)
T 2pcj_A 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMK 213 (224)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEE
Confidence 999 1777778899999999999999999999999999998524678999999988888899876543
No 22
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.89 E-value=9.2e-06 Score=81.33 Aligned_cols=67 Identities=13% Similarity=0.195 Sum_probs=57.9
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| .+|.....+.|+++|||++++||..++..+.++|.++... +.=+|+|||+..++..||.++-+.
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~ 219 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLK 219 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEE
Confidence 999 1666677889999999999999999999999999998522 678999999999999999986544
No 23
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.89 E-value=1e-05 Score=82.34 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=58.4
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..|.++|..+. .+.-+|+|||+...+..||.++-+.
T Consensus 156 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~~~tviivtH~~~~~~~~d~i~~l~ 227 (260)
T 2ghi_A 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLSTISSAESIILLN 227 (260)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGSTTCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHhCCEEEEEE
Confidence 898 16666778999999999999999999999999999997 6788999999999988899876554
No 24
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.88 E-value=4.2e-06 Score=81.91 Aligned_cols=34 Identities=35% Similarity=0.577 Sum_probs=31.5
Q ss_pred CccccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
|+|.+|+|.||++|.+ .+| +|.+ +|+|+||||||
T Consensus 1 M~i~~l~i~nf~~~~~-~~i-~f~~~~~~I~G~NgsG 35 (203)
T 3qks_A 1 MKLERVTVKNFRSHSD-TVV-EFKEGINLIIGQNGSG 35 (203)
T ss_dssp CEEEEEEEESBTTBSS-EEE-ECCSEEEEEECCTTSS
T ss_pred CEEEEEEEECCcCccc-eEE-EeCCCeEEEEcCCCCC
Confidence 8999999999999987 467 8987 99999999999
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.82 E-value=1.4e-05 Score=82.89 Aligned_cols=66 Identities=23% Similarity=0.279 Sum_probs=58.7
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| ++|-..+.++|++||||++++||..+...+.++|..+. .+.=+|+|||+..++..||.++.+.
T Consensus 191 LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~aD~i~vl~ 262 (306)
T 3nh6_A 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLSTVVNADQILVIK 262 (306)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHHHHTCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHHHHcCCEEEEEE
Confidence 899 16666678999999999999999999999999999997 7788999999999999999987554
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.81 E-value=1.8e-05 Score=80.99 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=58.0
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..+.++|..+.. .+.=+|+|||+...+..||.++-+.
T Consensus 157 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~ 230 (271)
T 2ixe_A 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLK 230 (271)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEE
Confidence 999 177777889999999999999999999999999999862 2678999999999988899877554
No 27
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.75 E-value=1.3e-05 Score=81.02 Aligned_cols=66 Identities=23% Similarity=0.223 Sum_probs=58.3
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..+.++|..+. .+.=+|+|||+...+..||.++-+.
T Consensus 140 LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~ 211 (243)
T 1mv5_A 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVDADKIYFIE 211 (243)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHHCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHHhCCEEEEEE
Confidence 999 16666678899999999999999999999999999997 7788999999999888999877554
No 28
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.75 E-value=6.5e-06 Score=88.19 Aligned_cols=34 Identities=35% Similarity=0.599 Sum_probs=31.3
Q ss_pred CccccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
|+|.+|+|.||+||.+. ++ +|.+ +|+|+||||||
T Consensus 1 M~i~~l~l~nF~~~~~~-~i-~f~~~~~~i~G~NGsG 35 (339)
T 3qkt_A 1 MKLERVTVKNFRSHSDT-VV-EFKEGINLIIGQNGSG 35 (339)
T ss_dssp CEEEEEEEEEETTEEEE-EE-ECCSEEEEEECCTTSS
T ss_pred CeEEEEEEEcccCccCe-EE-cCCCCeEEEECCCCCC
Confidence 89999999999999874 67 8987 99999999999
No 29
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.75 E-value=3.1e-05 Score=78.42 Aligned_cols=67 Identities=21% Similarity=0.234 Sum_probs=53.4
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhh--cchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSH--ADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~--ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..+.++|..+...+.=+|+|||+...+.. ||.++-+.
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~ 218 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMM 218 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEE
Confidence 788 16666678899999999999999999999999999995246789999999888764 59876543
No 30
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.72 E-value=3e-05 Score=79.25 Aligned_cols=67 Identities=18% Similarity=0.204 Sum_probs=56.5
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhh--cchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSH--ADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~--ad~l~gVt 1054 (1070)
||| .+|...+...|+++|||++++||..++..+.++|..+...+.-+|+|||....+.. ||.++-+.
T Consensus 165 LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~ 239 (267)
T 2zu0_C 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLY 239 (267)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEE
Confidence 888 16666678899999999999999999999999999985346789999999888764 89876554
No 31
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.70 E-value=1.2e-05 Score=77.67 Aligned_cols=36 Identities=50% Similarity=0.911 Sum_probs=30.8
Q ss_pred CCccccceeccccccc-CcccccCCCC-eEEEEcCCCCc
Q psy16118 2 SPILQYIEVDNFKSYK-GKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 2 ~m~~~~L~l~~F~~y~-~~~~i~df~~-l~lI~G~nGaG 38 (1070)
||+|.+|+|.||++|. +...+ +|.+ +++|+||||||
T Consensus 1 mM~i~~l~i~nf~~~~~~~~~~-~~~~g~~~i~G~NGsG 38 (182)
T 3kta_A 1 MPYIEKLELKGFKSYGNKKVVI-PFSKGFTAIVGANGSG 38 (182)
T ss_dssp -CEEEEEEEESBGGGCSSCEEE-ECCSSEEEEEECTTSS
T ss_pred CceEEEEEEeCeEeecCccEEE-ecCCCcEEEECCCCCC
Confidence 7999999999999995 34456 7876 99999999999
No 32
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.69 E-value=2.3e-05 Score=78.59 Aligned_cols=66 Identities=12% Similarity=0.260 Sum_probs=56.2
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHH---HhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIV---TKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~---~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| .+|...+.++|+++|||++++||..++..+.++|. .+. .+.-+|+|||+...+..||.++-+.
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~~~d~v~~l~ 202 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYLPQVDVIIVMS 202 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGGGSSEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHHHhCCEEEEEe
Confidence 898 16666778999999999999999999999999994 454 5678999999999888999877554
No 33
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.69 E-value=3.3e-05 Score=78.37 Aligned_cols=67 Identities=19% Similarity=0.268 Sum_probs=56.7
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..+.++|+++...+.=+|+|||....+. .||.++.+.
T Consensus 160 LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~ 233 (263)
T 2olj_A 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMD 233 (263)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 999 1777777889999999999999999999999999998524678999999977765 799876554
No 34
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.68 E-value=3.5e-05 Score=77.45 Aligned_cols=67 Identities=13% Similarity=0.083 Sum_probs=56.3
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc-hHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE-FFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~-~~~~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..+.++|.++...+.=+|+|||+.. +...||..+-+.
T Consensus 140 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 888 1777777899999999999999999999999999998524567999999985 567899876554
No 35
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.68 E-value=3.7e-05 Score=78.63 Aligned_cols=67 Identities=24% Similarity=0.202 Sum_probs=56.9
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..+.++|.++...+.=+|+|||+...+. .||.++-+.
T Consensus 139 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~ 212 (266)
T 2yz2_A 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLE 212 (266)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 1777778899999999999999999999999999998524678999999988765 699876554
No 36
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.67 E-value=3.5e-05 Score=78.00 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=56.9
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .+|...+...|+++|||++++||..++..+.++|..+... +.=+|+|||+...+ ..||.++-+.
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~ 203 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLN 203 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 898 1777777889999999999999999999999999998623 67899999998776 6899877554
No 37
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.65 E-value=4.4e-05 Score=77.25 Aligned_cols=67 Identities=22% Similarity=0.174 Sum_probs=56.6
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..+.++|.++...+.=+|+|||....+. .||.++-+.
T Consensus 147 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~ 220 (256)
T 1vpl_A 147 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIH 220 (256)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEE
Confidence 888 1777778899999999999999999999999999998524678999999987765 499876543
No 38
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.65 E-value=3.6e-05 Score=78.40 Aligned_cols=67 Identities=16% Similarity=0.237 Sum_probs=56.4
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..|.++|.++...+.=+|+|||....+ ..||.++-+.
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~ 227 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH 227 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 888 166667788999999999999999999999999999852457799999997776 4799876554
No 39
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.64 E-value=4.3e-05 Score=77.76 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=56.4
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..+.++|.++...+.=+|+|||+...+ ..||.++-+.
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~ 227 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMF 227 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999 166666788999999999999999999999999999862467799999997765 6899876554
No 40
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.63 E-value=4.7e-05 Score=82.01 Aligned_cols=58 Identities=24% Similarity=0.205 Sum_probs=51.4
Q ss_pred cCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeecc
Q psy16118 998 HPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICP 1055 (1070)
Q Consensus 998 ~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~ 1055 (1070)
.+.|+++|||++++||...+..+.++|..+...+.-+|+|||+..++..||..+.+..
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~~l~~ 359 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKLRITG 359 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEEEEET
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEEC
Confidence 5778999999999999999999999999986356789999999999999999876653
No 41
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.62 E-value=2.9e-05 Score=75.99 Aligned_cols=64 Identities=23% Similarity=0.242 Sum_probs=53.3
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh-hcchhe
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS-HADSLV 1051 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~-~ad~l~ 1051 (1070)
||| .+|...+.+.|+++|||++++||..++..+.++|.++...+.-+|+|||+...+. .||.++
T Consensus 134 LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 134 LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH 204 (214)
T ss_dssp SCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 898 1777778899999999999999999999999999998523467999999977654 567654
No 42
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.59 E-value=4.6e-05 Score=76.30 Aligned_cols=67 Identities=13% Similarity=0.057 Sum_probs=56.1
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..+.++|.++.. .+.=+|+|||.... ...||.++.+.
T Consensus 127 LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~ 201 (240)
T 2onk_A 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVML 201 (240)
T ss_dssp SCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999 177777788999999999999999999999999999852 25679999999765 57899876554
No 43
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.57 E-value=3.4e-05 Score=76.91 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=55.7
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHH-HHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASY-IVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~-l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..+.++ +..+. .+.=+|+|||+...+..||..+-+.
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~ 203 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILH 203 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHhCCEEEEEE
Confidence 898 177777789999999999999999999999997 45664 5678999999998888899876554
No 44
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.57 E-value=7.9e-05 Score=75.64 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=54.7
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcc-hheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHAD-SLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad-~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..+.++|..+. . =+|+|||....+ ..|| .++-+.
T Consensus 129 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~-~--tviivtHd~~~~~~~~d~~i~~l~ 200 (263)
T 2pjz_A 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG-K--EGILVTHELDMLNLYKEYKAYFLV 200 (263)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC-S--EEEEEESCGGGGGGCTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc-C--cEEEEEcCHHHHHHhcCceEEEEE
Confidence 999 17777778999999999999999999999999999996 4 799999997764 6899 766443
No 45
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.56 E-value=6e-05 Score=76.97 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=56.3
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhc-CCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKT-QDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~-~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .+|...+...+++||||++++||..++..|.++|.++. ..+.-+|+|||+...+ ..||+++-+.
T Consensus 144 LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~ 218 (275)
T 3gfo_A 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMK 218 (275)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999 16666778899999999999999999999999999985 1367899999997776 5799986554
No 46
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.55 E-value=1.9e-05 Score=85.10 Aligned_cols=34 Identities=35% Similarity=0.546 Sum_probs=31.3
Q ss_pred CccccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
|+|.+|+|.||+||.+ .++ +|.+ +|+|+||||||
T Consensus 1 M~~~~l~~~~f~~~~~-~~i-~~~~g~~~i~G~NGaG 35 (365)
T 3qf7_A 1 MRPERLTVRNFLGLKN-VDI-EFQSGITVVEGPNGAG 35 (365)
T ss_dssp CEEEEEEEEEETTEEE-EEE-ECCSEEEEEECCTTSS
T ss_pred CeeEEEEEeCccCccc-eEE-ecCCCeEEEECCCCCC
Confidence 8999999999999997 467 8876 99999999999
No 47
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.53 E-value=4.5e-05 Score=76.74 Aligned_cols=67 Identities=18% Similarity=0.192 Sum_probs=54.6
Q ss_pred hhh------hhhhccccCCC-------eEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheee
Q psy16118 988 VST------TIVSHRYHPAP-------FFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~P-------f~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gV 1053 (1070)
||| .+|...+.+.| +++|||++++||..++..+.++|..+...+.=+|+|||+...+ ..||.++-+
T Consensus 127 LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l 206 (249)
T 2qi9_C 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLL 206 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999 15554455566 9999999999999999999999999852466899999998876 789987655
Q ss_pred c
Q psy16118 1054 C 1054 (1070)
Q Consensus 1054 t 1054 (1070)
.
T Consensus 207 ~ 207 (249)
T 2qi9_C 207 K 207 (249)
T ss_dssp E
T ss_pred E
Confidence 4
No 48
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.46 E-value=6.1e-05 Score=77.29 Aligned_cols=67 Identities=18% Similarity=0.122 Sum_probs=55.5
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceE--EEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQT--IVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~--i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .+|...+.+.++++|||++++||..++..+.++|.++...+.=+ |+|||+...+ ..||.++-+.
T Consensus 162 LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~ 237 (279)
T 2ihy_A 162 LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLK 237 (279)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEE
Confidence 999 16766778999999999999999999999999999985224568 9999997765 6899876553
No 49
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.41 E-value=7.4e-05 Score=76.99 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=55.5
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHH-HHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYI-VTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l-~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| .+|...+.+.|+++|||++++||..++..+.++| ..+. .+.=+|+|||+...+..||..+-+.
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~~~d~i~~l~ 232 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILH 232 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHSSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHHcCCEEEEEE
Confidence 888 1666677889999999999999999999999964 4554 5678999999999988999876544
No 50
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.34 E-value=0.00012 Score=74.59 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=46.9
Q ss_pred CCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcchHh-hcchheeec
Q psy16118 999 PAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
..++++|||++++||..++..+.++|+++... +.=+|+|||+...+. .||+++-+.
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~ 222 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLA 222 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEE
Confidence 56699999999999999999999999998522 357999999987764 799976554
No 51
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.33 E-value=0.00017 Score=83.40 Aligned_cols=66 Identities=21% Similarity=0.291 Sum_probs=58.8
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| ++|-.-++++|+++|||++++||..+...+.+.|.++. .+.=+|+|||+..++..||..+-+.
T Consensus 481 LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~ 552 (582)
T 3b5x_A 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLSTIEQADEILVVD 552 (582)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEE
Confidence 999 26666678999999999999999999999999999997 6778999999999999999986543
No 52
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.31 E-value=0.00017 Score=83.52 Aligned_cols=66 Identities=21% Similarity=0.306 Sum_probs=58.7
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| ++|-..++++|+++|||++++||..+...+.+.|.++. .+.=+|+|||+..++..||..+-+.
T Consensus 481 LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~ 552 (582)
T 3b60_A 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIEQADEIVVVE 552 (582)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGGGTTTCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHHhCCEEEEEE
Confidence 999 26666678999999999999999999999999999997 6778999999999999999987554
No 53
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.31 E-value=0.0002 Score=82.60 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=59.2
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| ++|-..++++|+++|||++++||..+...+.+.|..+. .+.=+|+|||+..++..||+++.+.
T Consensus 480 LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~ 551 (587)
T 3qf4_A 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTALLADKILVLH 551 (587)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHHTTSSEEEEEE
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHHHHhCCEEEEEE
Confidence 999 16666678999999999999999999999999999997 7889999999999999999987554
No 54
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.31 E-value=0.1 Score=47.95 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=1.5
Q ss_pred HHHHHhhHHHHHHHHHHH
Q psy16118 410 NSDVGSSKNRVQELQKEL 427 (1070)
Q Consensus 410 ~~~~~~~~~~~~~l~~~~ 427 (1070)
...+..++.++.+|..++
T Consensus 160 ~~~~QRLkdE~rDLk~El 177 (189)
T 2v71_A 160 LVSVQRLKDEARDLRQEL 177 (189)
T ss_dssp HCCC--------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444333
No 55
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.26 E-value=9.4e-05 Score=78.51 Aligned_cols=35 Identities=37% Similarity=0.580 Sum_probs=32.0
Q ss_pred CccccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
|+|.+|+|.||++|.+...+ +|.+ +++|+||||||
T Consensus 1 M~l~~L~i~nfr~~~~~~~l-~~~~g~~~i~G~NGsG 36 (322)
T 1e69_A 1 MRLKKLYLKGFKSFGRPSLI-GFSDRVTAIVGPNGSG 36 (322)
T ss_dssp CEEEEEEEESBTTBCSCEEE-ECCSSEEEEECCTTTC
T ss_pred CeEeEEEEeCceeecCCeEE-ecCCCcEEEECCCCCc
Confidence 78999999999999877778 8866 99999999999
No 56
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.26 E-value=0.00023 Score=82.41 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=59.1
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| ++|-..++++|+++|||++++||..+...+.+.|.++. .+.=+|+|||+..++..||.++.+.
T Consensus 492 LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~ 563 (598)
T 3qf4_B 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKNADLIIVLR 563 (598)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHHCSEEEEEC
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEE
Confidence 999 16666678999999999999999999999999999997 7889999999999999999987554
No 57
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.25 E-value=0.0002 Score=83.12 Aligned_cols=66 Identities=21% Similarity=0.199 Sum_probs=58.6
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| ++|-.-++++|+++|||++++||..+...+.+.|.++. .+.=+|+|||+..++..||.++-+.
T Consensus 484 LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~ 555 (595)
T 2yl4_A 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM-DGRTVLVIAHRLSTIKNANMVAVLD 555 (595)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHH-TTSEEEEECCCHHHHHHSSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHcCCEEEEEE
Confidence 899 26666678999999999999999999999999999997 6778999999999999999987554
No 58
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.24 E-value=0.00024 Score=81.99 Aligned_cols=66 Identities=23% Similarity=0.312 Sum_probs=58.5
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| ++|-..+.++|+++|||++++||..+...+.+.|..+. .+.=+|+|||+..++..||..+.+.
T Consensus 478 LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~ 549 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITHADKIVVIE 549 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTTCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEE
Confidence 999 16666678999999999999999999999999999997 7778999999999999999987554
No 59
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.23 E-value=0.0002 Score=76.83 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=57.3
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
||| .+|-..+...++++|||+.++||...+..+..+|+.+. .+.=+|+|||+...+..||+++-+
T Consensus 156 LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e~~~~aDri~vl 226 (390)
T 3gd7_A 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEAMLECDQFLVI 226 (390)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSGGGTTCSEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHHHHHhCCEEEEE
Confidence 999 16666678889999999999999999999999999886 678899999999999999997644
No 60
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.21 E-value=0.00033 Score=73.98 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=55.4
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcc-hHhhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEE-FFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~-~~~~ad~l~gV 1053 (1070)
||| .+|...+...++++|||++++||..++..+..+|+.+.. .+.=+|+|||... .+..||.++-+
T Consensus 128 LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl 201 (348)
T 3d31_A 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVV 201 (348)
T ss_dssp SCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999 166667788899999999999999999999999999852 2578999999965 56889987544
No 61
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.19 E-value=0.00034 Score=73.82 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=56.0
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .+|-......++++|||++++||..+...+.++|+++.. .+.=+|+|||....+ ..||+++-+.
T Consensus 164 LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~ 238 (366)
T 3tui_C 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVIS 238 (366)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999 166666778899999999999999999999999999852 367899999998775 5699976443
No 62
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.14 E-value=0.00041 Score=73.59 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=55.1
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcc-hHhhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEE-FFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~-~~~~ad~l~gV 1053 (1070)
||| .+|...+...++++|||++++||...+..+..+|+.+.. .+.=+|+|||... .+..||.++-+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl 214 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVL 214 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999 166667788899999999999999999999999999852 2567999999966 46789987644
No 63
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.12 E-value=0.00041 Score=73.61 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=55.2
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcc-hHhhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEE-FFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~-~~~~ad~l~gV 1053 (1070)
||| .+|-..+...++++|||++++||..++..+..+|+.+.. .+.=+|+|||... .+..||.++-+
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl 207 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVI 207 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 999 166667788899999999999999999999999999852 2567999999965 46889987644
No 64
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.08 E-value=0.00048 Score=72.98 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=54.9
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gV 1053 (1070)
||| .+|-..+...++++|||++++||..++..+..+|+++.. .+.=+|+|||.... +..||.++-+
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl 207 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVF 207 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 999 166666788899999999999999999999999999852 25679999999664 6789987544
No 65
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.07 E-value=0.00046 Score=72.89 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=54.6
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gV 1053 (1070)
||| .+|-..+...++++|||++++||..++..+..+|+++.. .+.=+|+|||.... +..||.++-+
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl 219 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVL 219 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEE
Confidence 999 166666778889999999999999999999999999852 25679999999664 5789987543
No 66
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.02 E-value=0.00021 Score=79.48 Aligned_cols=36 Identities=47% Similarity=0.786 Sum_probs=31.1
Q ss_pred CCccccceecccccccCcccccCCC-C-eEEEEcCCCCc
Q psy16118 2 SPILQYIEVDNFKSYKGKFSIGPLK-K-FTAVIGPNGSG 38 (1070)
Q Consensus 2 ~m~~~~L~l~~F~~y~~~~~i~df~-~-l~lI~G~nGaG 38 (1070)
||+|.+|+|.||++|.+.+.+ +|. + +++|+||||||
T Consensus 1 mm~i~~l~~~~~~~~~~~~~~-~~~~~~~~~i~G~nG~G 38 (430)
T 1w1w_A 1 MGRLVGLELSNFKSYRGVTKV-GFGESNFTSIIGPNGSG 38 (430)
T ss_dssp -CCEEEEEEESCSSCCSEEEE-ECTTCSEEEEECSTTSS
T ss_pred CCeeEEEEEeCEEEECCceeE-EecCCCEEEEECCCCCC
Confidence 799999999999999875556 775 3 99999999999
No 67
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.00 E-value=0.00055 Score=73.14 Aligned_cols=66 Identities=14% Similarity=0.138 Sum_probs=54.7
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcch-Hhhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEF-FSHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~-~~~ad~l~gV 1053 (1070)
||| .+|...+...++++|||++++||...+..+..+|+++.. .+.=+|+|||.... +..||.++-+
T Consensus 140 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl 213 (372)
T 1g29_1 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVM 213 (372)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEE
Confidence 999 166666778899999999999999999999999998852 25679999999664 5789987544
No 68
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.97 E-value=0.00062 Score=72.53 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=54.7
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-CceEEEEecCcch-Hhhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-SLQTIVISLKEEF-FSHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-~~Q~i~iT~~~~~-~~~ad~l~gV 1053 (1070)
||| .+|-..+...++++|||++++||...+..+..+|+++... +.=+|+|||.... +..||.++-+
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl 215 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVM 215 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 888 1666667888999999999999999999999999998522 5679999999654 6789987544
No 69
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.95 E-value=0.00073 Score=77.56 Aligned_cols=66 Identities=21% Similarity=0.223 Sum_probs=55.1
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheee
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGI 1053 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gV 1053 (1070)
||| . +|.......++++|||++++||..++..+.++|+.+...+.-+|+|||+...+ ..||+++-+
T Consensus 229 LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl 301 (607)
T 3bk7_A 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV 301 (607)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEE
Confidence 999 2 66666788899999999999999999999999999852467899999997765 568987544
No 70
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.92 E-value=0.00064 Score=86.23 Aligned_cols=65 Identities=23% Similarity=0.291 Sum_probs=59.0
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
||| ++|=.-++++|++||||+.++||..+...+.+.|..+. .+.=.|+|||+..++..||.+|-+
T Consensus 555 LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~i~~aD~Iivl 625 (1321)
T 4f4c_A 555 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLSTIRNADLIISC 625 (1321)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTTTTTCSEEEEE
T ss_pred CCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHHHHhCCEEEEe
Confidence 999 26666679999999999999999999999999999998 889999999999999999998754
No 71
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.92 E-value=0.25 Score=45.42 Aligned_cols=12 Identities=8% Similarity=0.329 Sum_probs=4.4
Q ss_pred hHHHHHHHHHHH
Q psy16118 287 DIADLETQLADV 298 (1070)
Q Consensus 287 ~~~~l~~~l~~~ 298 (1070)
.+..++..+.+.
T Consensus 25 ~~~~le~El~EF 36 (189)
T 2v71_A 25 SFQEARDELVEF 36 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 72
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.87 E-value=0.00072 Score=71.90 Aligned_cols=66 Identities=21% Similarity=0.165 Sum_probs=54.3
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCc-chHhhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKE-EFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~-~~~~~ad~l~gV 1053 (1070)
||| .+|-..+...++++|||+.++||...+..+..+|+++.. .+.=+|+|||.. ..+..||+++-+
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl 207 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVL 207 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEE
Confidence 999 155555677889999999999999999999999999852 267899999986 567889987543
No 73
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.83 E-value=0.0089 Score=63.41 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=42.5
Q ss_pred cCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeecc
Q psy16118 998 HPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICP 1055 (1070)
Q Consensus 998 ~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~ 1055 (1070)
...|+++|||++++||..++..+.++|..+. .=||++||. .. .+|.+|.|..
T Consensus 291 ~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~--~~~~i~~l~~ 342 (359)
T 2o5v_A 291 GEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP--GAALTLRAQA 342 (359)
T ss_dssp SSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--TCSEEEEEET
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--cCCEEEEEEC
Confidence 6889999999999999999999999998873 346667774 33 7888877754
No 74
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.83 E-value=0.0011 Score=70.06 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=53.1
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcc-hHhhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEE-FFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~-~~~~ad~l~gV 1053 (1070)
||| .+|-..+...++++|||+.++||...+..+...|..+.. .+.=+|+|||... .+..||+++-+
T Consensus 139 LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl 212 (359)
T 3fvq_A 139 LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVM 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEE
Confidence 999 166666778889999999999999999999987776532 4678999999864 56789997543
No 75
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.81 E-value=0.00086 Score=76.09 Aligned_cols=67 Identities=21% Similarity=0.189 Sum_probs=57.2
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .+|.+...+.+++||||++++||..++..+.++|.++.. .+.=+|+|||....+ ..||+++-+.
T Consensus 402 LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~ 476 (538)
T 1yqt_A 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE 476 (538)
T ss_dssp CCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 999 288888899999999999999999999999999999851 366799999997765 4799987554
No 76
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.79 E-value=0.00084 Score=79.40 Aligned_cols=67 Identities=15% Similarity=0.275 Sum_probs=56.3
Q ss_pred hhh------hhhhccccC---CCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHP---APFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~---~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| .+|.+...+ .+++||||++++||...+..+.++|..+...+.-+|||||+..++..||.++-+.
T Consensus 846 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~ 921 (972)
T 2r6f_A 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLG 921 (972)
T ss_dssp CCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEc
Confidence 999 166666654 3699999999999999999999999998635678999999999999999987553
No 77
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.77 E-value=0.00095 Score=76.63 Aligned_cols=67 Identities=21% Similarity=0.209 Sum_probs=57.3
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| .+|.+...+.++++|||++++||..++..+.++|+.+.. .+.=+|+|||....+. .||+++-+.
T Consensus 472 LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~ 546 (607)
T 3bk7_A 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 546 (607)
T ss_dssp CCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc
Confidence 999 288888889999999999999999999999999999842 3678999999977765 799887554
No 78
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.75 E-value=0.001 Score=75.16 Aligned_cols=67 Identities=24% Similarity=0.196 Sum_probs=56.9
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHh-hcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFS-HADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~-~ad~l~gVt 1054 (1070)
||| .+|.+.....+++||||++++||..++..+.++|+++.. .+.=+|+|||....+. .||+++-+.
T Consensus 386 LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~ 460 (538)
T 3ozx_A 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460 (538)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 999 288888899999999999999999999999999999852 3567999999977665 699986443
No 79
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.74 E-value=0.00096 Score=79.24 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=56.4
Q ss_pred hhh------hhhhccccC---CCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHP---APFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~---~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| .+|.+...+ .+++||||++++||...+..+.++|..+...+.-+|||||+..++..||.++-+.
T Consensus 864 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~ 939 (993)
T 2ygr_A 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLG 939 (993)
T ss_dssp SCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEC
Confidence 999 166666654 3699999999999999999999999998535678999999999999999987553
No 80
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.73 E-value=0.0011 Score=75.13 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=54.9
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheee
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGI 1053 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gV 1053 (1070)
||| . +|.......+++||||++++||..++..+.++|+.+...+.-+|+|||+...+ ..||+++-+
T Consensus 159 LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl 231 (538)
T 1yqt_A 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231 (538)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999 2 66666778899999999999999999999999999853467899999996655 568987643
No 81
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.0011 Score=75.95 Aligned_cols=66 Identities=20% Similarity=0.149 Sum_probs=56.2
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchH-hhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFF-SHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~-~~ad~l~gV 1053 (1070)
||| .+|.+...+.++++|||++++||..++..+.++|+++.. .+.=+|+|||....+ ..||+++-+
T Consensus 468 LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl 541 (608)
T 3j16_B 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVF 541 (608)
T ss_dssp CCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999 288888899999999999999999999999999998741 356799999997665 569998643
No 82
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.70 E-value=0.024 Score=64.34 Aligned_cols=35 Identities=29% Similarity=0.554 Sum_probs=30.4
Q ss_pred CCccccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 2 SPILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 2 ~m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
.|.+.+|+|.||+.|.+ ..+ +|.+ +++|+|+||||
T Consensus 37 ~M~l~~L~i~nf~~~~~-~~l-~f~~g~n~i~G~NGaG 72 (517)
T 4ad8_A 37 GPRLSRLEIRNLATITQ-LEL-ELGGGFCAFTGETGAG 72 (517)
T ss_dssp -CCCCEEEEESBTTBSC-EEE-ECCCSEEEEEESHHHH
T ss_pred cceeeeeecccccceee-EEE-ecCCCeEEEEcCCCCC
Confidence 36799999999999975 456 7876 99999999999
No 83
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.69 E-value=0.0012 Score=78.08 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=57.5
Q ss_pred hhh------hhhhccccC---CCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHP---APFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~---~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| .+|.+...+ .+++||||++++||...+..+.++|..+...+.=+|||||+..++..||.++-+.
T Consensus 731 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~ 806 (842)
T 2vf7_A 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIG 806 (842)
T ss_dssp CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEC
Confidence 999 177777764 5799999999999999999999999998535678999999999999999987553
No 84
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.67 E-value=0.0015 Score=77.86 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=54.9
Q ss_pred hhh--h----hhhcccc-CCC-eEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYH-PAP-FFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~-~~P-f~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . +|-.... |.| ++||||+.++||...+..+.++|+.+...+.-+|+|||+..++..||.++-+-
T Consensus 465 LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~lg 539 (916)
T 3pih_A 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIIDIG 539 (916)
T ss_dssp CCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEc
Confidence 999 2 4433333 333 89999999999999999999999999635678999999999999999987664
No 85
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.66 E-value=0.002 Score=76.24 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=55.0
Q ss_pred hhh--h----hhhcccc-CC-CeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYH-PA-PFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~-~~-Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . +|-.... |. .+|||||+.++||...+.++..+|+.+...+.=+|||||+..++..||+++-+-
T Consensus 505 LSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lg 579 (972)
T 2r6f_A 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIG 579 (972)
T ss_dssp CCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEEC
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeC
Confidence 999 2 4444343 32 589999999999999999999999998535678999999999999999987553
No 86
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.65 E-value=0.33 Score=43.24 Aligned_cols=36 Identities=11% Similarity=0.243 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy16118 387 KLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQE 422 (1070)
Q Consensus 387 ~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 422 (1070)
.+..++..+...+..+..+...+...+..++.+...
T Consensus 101 ~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~ 136 (168)
T 3o0z_A 101 SLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNN 136 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333333333333333333
No 87
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.65 E-value=0.0017 Score=73.44 Aligned_cols=63 Identities=16% Similarity=0.108 Sum_probs=53.5
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcch-Hhhcchhe
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEF-FSHADSLV 1051 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~-~~~ad~l~ 1051 (1070)
||| - +|-..+...+++||||++++||...+..+.++|+++. .+.-+|+|||+... ...||.++
T Consensus 139 LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~-~g~tii~vsHdl~~~~~~~d~i~ 208 (538)
T 3ozx_A 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-KNKYVIVVDHDLIVLDYLTDLIH 208 (538)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC-TTSEEEEECSCHHHHHHHCSEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh-CCCEEEEEEeChHHHHhhCCEEE
Confidence 999 1 6666677889999999999999999999999999997 67889999998654 55688754
No 88
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.62 E-value=0.0014 Score=77.31 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=53.8
Q ss_pred hhh---h---hhhccc-cCCC-eEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheee
Q psy16118 988 VST---T---IVSHRY-HPAP-FFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG---t---~al~~~-~~~P-f~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
||| - +|-..+ .|.| +++|||++++||..++..+.++|+.+...+.=+|+|||+...+..||.++-+
T Consensus 203 LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~l 276 (670)
T 3ux8_A 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDI 276 (670)
T ss_dssp SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEe
Confidence 999 2 333333 3443 9999999999999999999999999853467899999999999999998755
No 89
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.60 E-value=0.0013 Score=78.34 Aligned_cols=67 Identities=18% Similarity=0.288 Sum_probs=55.3
Q ss_pred hhh--h----hhhcccc-C--CCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T----IVSHRYH-P--APFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t----~al~~~~-~--~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| - +|-+..+ | .+++||||++++||...+..+.++|..+...+.=+|||||+..++..||.++-+.
T Consensus 806 LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLg 881 (916)
T 3pih_A 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLG 881 (916)
T ss_dssp CCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEec
Confidence 999 2 5555443 3 3599999999999999999999999998524567999999999999999987554
No 90
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.57 E-value=0.0015 Score=83.02 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=54.8
Q ss_pred hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheee
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
+|=.-++++|++||||.+++||..+-..+.+.|++.. .++=+|+||||..|+..||+++-+
T Consensus 1228 iARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsTi~~aD~I~Vl 1288 (1321)
T 4f4c_A 1228 IARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNTVMNADCIAVV 1288 (1321)
T ss_dssp HHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSSTTTTCSEEEEE
T ss_pred HHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHHHHhCCEEEEE
Confidence 4444568999999999999999999999999999987 889999999999999999998744
No 91
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.54 E-value=0.0017 Score=77.09 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=54.8
Q ss_pred hhh---h---hhhcccc-C-CCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST---T---IVSHRYH-P-APFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG---t---~al~~~~-~-~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . +|-.... | ..+|||||+.++||...+.++..+|+.+...+.=+|||||+..++..||.++-+-
T Consensus 522 LSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lg 596 (993)
T 2ygr_A 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIG 596 (993)
T ss_dssp CCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEEC
T ss_pred CCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEec
Confidence 999 2 4444333 3 3589999999999999999999999988535678999999999999999987553
No 92
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.54 E-value=0.0001 Score=72.60 Aligned_cols=34 Identities=21% Similarity=0.452 Sum_probs=27.0
Q ss_pred CccccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
|+|++|+|.||++|.+. .+ +|.+ +++|+||||||
T Consensus 5 ~k~~~l~l~~~~~~~~~-~~-~~~~~~~~i~GpnGsG 39 (227)
T 1qhl_A 5 GKFRSLTLINWNGFFAR-TF-DLDELVTTLSGGNGAG 39 (227)
T ss_dssp CEEEEEEEEEETTEEEE-EE-CHHHHHHHHHSCCSHH
T ss_pred ceeeEEEEEeeecccCC-EE-EEcCcEEEEECCCCCC
Confidence 88888888888888766 56 6665 78888888888
No 93
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.48 E-value=0.0018 Score=76.30 Aligned_cols=66 Identities=15% Similarity=0.296 Sum_probs=53.6
Q ss_pred hhh---h---hhhcccc-CC--CeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheee
Q psy16118 988 VST---T---IVSHRYH-PA--PFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG---t---~al~~~~-~~--Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
||| - +|-.... |. ++++|||++++||..++..+.++|.++...+.=+|+|||+..++..||+++-+
T Consensus 544 LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l 618 (670)
T 3ux8_A 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDL 618 (670)
T ss_dssp CCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEE
T ss_pred CCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEe
Confidence 999 1 4443333 32 49999999999999999999999999853467799999999999999987644
No 94
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.47 E-value=0.0019 Score=81.71 Aligned_cols=66 Identities=24% Similarity=0.247 Sum_probs=59.2
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| ++|-+..+++|++||||++++||..+...+.+.|.... .+.=+|+|||+..++..||+++-+.
T Consensus 1172 LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~i~~~dri~vl~ 1243 (1284)
T 3g5u_A 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLSTIQNADLIVVIQ 1243 (1284)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTGGGSCSEEEEEE
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHHHHcCCEEEEEE
Confidence 888 27777789999999999999999999999999999987 7888999999999999999987544
No 95
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.0033 Score=71.95 Aligned_cols=66 Identities=18% Similarity=0.109 Sum_probs=54.1
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheee
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGI 1053 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gV 1053 (1070)
||| - +|-......++++|||++++||...+..+..+|+.+...+.=+|+|||+...+ ..||+++-+
T Consensus 222 LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl 294 (608)
T 3j16_B 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII 294 (608)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 899 1 55555678889999999999999999999999999864456799999986554 568987644
No 96
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.42 E-value=0.38 Score=41.91 Aligned_cols=111 Identities=14% Similarity=0.298 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH
Q psy16118 109 TDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKL 188 (1070)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (1070)
..+.....++..++..+.........+......+..+...+..++..-...+.+.......+......+...+..+..++
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rl 92 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRL 92 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555444444444444444444333334444433333333333334444444444
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy16118 189 ASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEY 226 (1070)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 226 (1070)
.... .....+......+...+..+..++..+
T Consensus 93 eeee-------e~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 93 EDEE-------EMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 333344444444444444444444433
No 97
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.40 E-value=0.0036 Score=74.00 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=54.7
Q ss_pred hhh---h---hhhcccc-CC-CeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 988 VST---T---IVSHRYH-PA-PFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG---t---~al~~~~-~~-Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
||| . +|-.... |. .+|||||+.++||...+..+..+|+.+...+.-+|||||+..++..||.++-+-
T Consensus 380 LSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lg 454 (842)
T 2vf7_A 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVG 454 (842)
T ss_dssp SCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEEC
T ss_pred CCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeC
Confidence 999 2 4433333 32 489999999999999999999999998635678999999999999999987664
No 98
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.39 E-value=0.49 Score=42.18 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy16118 388 LEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQ 429 (1070)
Q Consensus 388 l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 429 (1070)
++.++..+..+++.+......+..+...+...+..++.+...
T Consensus 95 lq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~ 136 (168)
T 3o0z_A 95 LQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNN 136 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333343333333333333334444444444443333
No 99
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.38 E-value=0.0022 Score=81.08 Aligned_cols=65 Identities=25% Similarity=0.308 Sum_probs=57.9
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheee
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gV 1053 (1070)
||| ++|-..++++|++||||++++||..+...+.+.|.... .+.=+|+|||+..++..||.++-+
T Consensus 527 LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~i~~~d~i~vl 597 (1284)
T 3g5u_A 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLSTVRNADVIAGF 597 (1284)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHHHTTCSEEEEC
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEE
Confidence 999 26666678999999999999999999999999999887 788999999999999999998644
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.11 E-value=1.7 Score=59.10 Aligned_cols=10 Identities=40% Similarity=1.089 Sum_probs=6.9
Q ss_pred EEEEcCCCCc
Q psy16118 29 TAVIGPNGSG 38 (1070)
Q Consensus 29 ~lI~G~nGaG 38 (1070)
++|.||+|+|
T Consensus 909 vmlVGp~gsG 918 (3245)
T 3vkg_A 909 VMMVGPSGGG 918 (3245)
T ss_dssp EEEECSSSSS
T ss_pred EEEECCCCCC
Confidence 5667777777
No 101
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.07 E-value=0.0049 Score=73.67 Aligned_cols=64 Identities=22% Similarity=0.350 Sum_probs=54.1
Q ss_pred hhh---h---hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST---T---IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG---t---~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| . +|.....+.++++|||++++||..++..+.++|.. . +.-+|+|||+...+ ..||.++.+.
T Consensus 549 LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-~--g~tvIivSHdl~~l~~~adrii~L~ 619 (986)
T 2iw3_A 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-C--GITSITISHDSVFLDNVCEYIINYE 619 (986)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH-S--CSEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh-C--CCEEEEEECCHHHHHHhCCEEEEEE
Confidence 899 1 66666788999999999999999999999999987 3 56899999998776 5789876543
No 102
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.06 E-value=0.0042 Score=74.24 Aligned_cols=64 Identities=19% Similarity=0.294 Sum_probs=54.4
Q ss_pred hhh------hhhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchH-hhcchheeec
Q psy16118 988 VST------TIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF-SHADSLVGIC 1054 (1070)
Q Consensus 988 LSG------t~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~-~~ad~l~gVt 1054 (1070)
||| .+|.+...+.+++||||++++||..++..+.++|+++. .=+|+|||+...+ ..||.+|-+.
T Consensus 902 LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g---~tVIiISHD~e~v~~l~DrVivL~ 972 (986)
T 2iw3_A 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFE---GGVIIITHSAEFTKNLTEEVWAVK 972 (986)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCS---SEEEEECSCHHHHTTTCCEEECCB
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhC---CEEEEEECCHHHHHHhCCEEEEEE
Confidence 999 27777778889999999999999999999999998773 3699999998876 5799887554
No 103
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.01 E-value=0.0027 Score=67.43 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=30.9
Q ss_pred CCccccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 2 SPILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 2 ~m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
+|+|.+|++.||..|.+ ..+ +|.+ +++|+||||||
T Consensus 3 ~M~i~~L~l~~~~~~~~-~~~-~~~~g~~~i~G~nG~G 38 (359)
T 2o5v_A 3 DVRLSALSTLNYRNLAP-GTL-NFPEGVTGIYGENGAG 38 (359)
T ss_dssp CCCEEEEEEESBTTCCS-EEE-ECCSEEEEEECCTTSS
T ss_pred CcEEeEEEEeCccceee-eEE-EEcCCeEEEECCCCCC
Confidence 49999999999999975 455 6876 99999999999
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.95 E-value=2 Score=58.36 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy16118 177 SKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRK 223 (1070)
Q Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 223 (1070)
++.++..++.++...+..+...+..+..++..+..++.+++....+.
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek 2058 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRET 2058 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444433333
No 105
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.58 E-value=0.0018 Score=61.19 Aligned_cols=60 Identities=8% Similarity=-0.040 Sum_probs=46.6
Q ss_pred hhhccccCCCeEEeecccccCChhhH----------------HHHHHHHHHhcCCCceEEEEecCcchHhhcchhe
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALDNTNI----------------GKVASYIVTKTQDSLQTIVISLKEEFFSHADSLV 1051 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD~~n~----------------~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~ 1051 (1070)
+|-....+.++++|||+.++||..|. ..+.++|..+...+.-+|+|||....+..+++++
T Consensus 94 iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~~ 169 (171)
T 4gp7_A 94 MAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFER 169 (171)
T ss_dssp HHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEEE
T ss_pred HHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhcc
Confidence 55555667789999999999999965 6667776665324567999999998888777655
No 106
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.14 E-value=1.1 Score=36.81 Aligned_cols=80 Identities=11% Similarity=0.149 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy16118 339 ILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKN 418 (1070)
Q Consensus 339 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 418 (1070)
+..+..........+...+............++..+...+..++..++.++..+......+.............+..+.+
T Consensus 14 lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~R 93 (101)
T 3u1c_A 14 LKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444444444444443333333333333333333
No 107
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.15 E-value=2 Score=35.34 Aligned_cols=64 Identities=6% Similarity=0.173 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 339 ILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDN 402 (1070)
Q Consensus 339 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 402 (1070)
+..+..........+...+............++..+...+..++..++.+...+......+...
T Consensus 14 lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 14 LKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444444444444444444443333333333333333
No 108
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.78 E-value=9.8 Score=46.70 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q psy16118 260 VSHIQKKLASAKK 272 (1070)
Q Consensus 260 ~~~l~~~~~~~~~ 272 (1070)
+..++++...++.
T Consensus 1025 v~~L~~e~~~L~q 1037 (1080)
T 2dfs_A 1025 VSELKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 109
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.67 E-value=0.039 Score=52.02 Aligned_cols=42 Identities=7% Similarity=0.048 Sum_probs=33.7
Q ss_pred cccCCCeEEeec--ccccCChhhHHHHHHHHHHhcCCCceEEEEecC
Q psy16118 996 RYHPAPFFVLDE--IDAALDNTNIGKVASYIVTKTQDSLQTIVISLK 1040 (1070)
Q Consensus 996 ~~~~~Pf~ilDE--vda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~ 1040 (1070)
...+.+++|||| +.+++|......+.++|... ..=+|++||+
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~---~~~~i~~~H~ 139 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDP---NVNVVATIPI 139 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCT---TSEEEEECCS
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcC---CCeEEEEEcc
Confidence 356778999999 89999999999998888652 3348888873
No 110
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.03 E-value=0.06 Score=52.19 Aligned_cols=49 Identities=10% Similarity=0.126 Sum_probs=37.3
Q ss_pred hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhh
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSH 1046 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ 1046 (1070)
+|.....+.++++|||++++ ++..+.++|..+. .++-+| |||+...+..
T Consensus 115 lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~-~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 115 YMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLG-FGSKMV-VTGDITQVDL 163 (208)
T ss_dssp GGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBC-TTCEEE-EEEC------
T ss_pred HHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhc-CCCEEE-EECCHHHHhC
Confidence 66666778899999999999 8899999999884 677788 9999776553
No 111
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.92 E-value=0.1 Score=57.39 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=45.0
Q ss_pred CeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeecc
Q psy16118 1001 PFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICP 1055 (1070)
Q Consensus 1001 Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~ 1055 (1070)
-|+||||. .-||+.++...+++++.+ +.|.||+||. .+....|+.|-|..
T Consensus 416 rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~-~i~p~v~~~~~~~r 465 (483)
T 3euj_A 416 RLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE-NISPERGTTYKLVR 465 (483)
T ss_dssp CEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-SCCCSSSEEEECCE
T ss_pred eEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-hhhhccCceEEEEE
Confidence 46999999 999999999999999988 5999999999 77777888888776
No 112
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.69 E-value=3 Score=36.23 Aligned_cols=45 Identities=11% Similarity=0.187 Sum_probs=22.0
Q ss_pred HHhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 331 EATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKR 375 (1070)
Q Consensus 331 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 375 (1070)
.+...+..++.++..++.++.....++..+-.-+-.+..+|..++
T Consensus 79 ~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 79 DARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555554455444444444444444443
No 113
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=92.34 E-value=0.12 Score=62.19 Aligned_cols=59 Identities=7% Similarity=-0.019 Sum_probs=46.3
Q ss_pred ccCCCeEEeecccccCChhhHHHH-HHHHHHhcC-CCceEEEEecCcchHhhcchheeecc
Q psy16118 997 YHPAPFFVLDEIDAALDNTNIGKV-ASYIVTKTQ-DSLQTIVISLKEEFFSHADSLVGICP 1055 (1070)
Q Consensus 997 ~~~~Pf~ilDEvda~lD~~n~~~~-~~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~l~gVt~ 1055 (1070)
..+.+++||||+.+++|......+ ..++..+.. .+.=+|++||...+...||.+++|..
T Consensus 739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~n 799 (934)
T 3thx_A 739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNN 799 (934)
T ss_dssp CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEE
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEe
Confidence 456689999999999999877666 455555541 36789999999999999998766653
No 114
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.31 E-value=2.2 Score=37.23 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=23.6
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 330 AEATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRH 376 (1070)
Q Consensus 330 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 376 (1070)
..+...+..++.++..++.++.....++..+-.-+-.+..+|..++.
T Consensus 80 ~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 80 AQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555444455555544443
No 115
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=92.04 E-value=6.3 Score=41.94 Aligned_cols=103 Identities=12% Similarity=0.159 Sum_probs=52.1
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy16118 763 KDTKKNVARWERAVSDDEEELARAQGAEEKLAGEMRAEADKLENMRATRLTKKQAVD-AMDEEIGKARREVGSIAKDIQA 841 (1070)
Q Consensus 763 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~~~~ 841 (1070)
.++...|+++...+.++...-.....-...+.+.+. ..+....+ ......++. +|+..+..++.++...-..++.
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr---~rq~q~~d-NdNtynE~S~ELRRrIqyLKekVdnQlsnIrv 135 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILR---GDFSSANN-RDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQL 135 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTS---SHHHHHHH-HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH---HHHHhhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666665444444433333332221 11111111 111122222 4455555555555555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy16118 842 AQKSCVNLESKLEMKKSERHDILMNCKM 869 (1070)
Q Consensus 842 l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 869 (1070)
|+..+..+..+|++++.++.-.+..|+.
T Consensus 136 LQsnLedq~~kIQRLEvDIdiqirsCKg 163 (562)
T 3ghg_A 136 LQKNVRAQLVDMKRLEVDIDIKIRSCRG 163 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6666666677777777777667777753
No 116
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=91.51 E-value=0.15 Score=61.00 Aligned_cols=55 Identities=9% Similarity=0.053 Sum_probs=44.9
Q ss_pred ccCCCeEEeecccccCChhhHHHHH-HHHHHhcC-CCceEEEEecCcchHhhcchhe
Q psy16118 997 YHPAPFFVLDEIDAALDNTNIGKVA-SYIVTKTQ-DSLQTIVISLKEEFFSHADSLV 1051 (1070)
Q Consensus 997 ~~~~Pf~ilDEvda~lD~~n~~~~~-~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~l~ 1051 (1070)
..+.++++|||+.+++|......++ .++..+.. .+.=+|++||...+...||.+-
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~ 806 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 806 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTT
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcc
Confidence 5566799999999999999888887 66766631 4678999999999998888654
No 117
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.96 E-value=0.11 Score=57.12 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=45.7
Q ss_pred hhh---h---hhhc--cccCCCe----EEeec-ccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc--hH-----hhc
Q psy16118 988 VST---T---IVSH--RYHPAPF----FVLDE-IDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE--FF-----SHA 1047 (1070)
Q Consensus 988 LSG---t---~al~--~~~~~Pf----~ilDE-vda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~--~~-----~~a 1047 (1070)
||| . +|.. ...+.++ +|||| ..++||.. ...+.+++..+. . -+|+|||... +. ..|
T Consensus 236 LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~--~-tviiVth~~~~~l~~~~~~~~~ 311 (460)
T 2npi_A 236 LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLN--V-NIMLVLCSETDPLWEKVKKTFG 311 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTT--C-CEEEEECCSSCTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhC--C-CEEEEEccCchhhhHHHHHHhc
Confidence 999 1 5555 5677889 99999 99999999 778888887763 3 3999999876 43 678
Q ss_pred ch
Q psy16118 1048 DS 1049 (1070)
Q Consensus 1048 d~ 1049 (1070)
|.
T Consensus 312 dr 313 (460)
T 2npi_A 312 PE 313 (460)
T ss_dssp HH
T ss_pred cc
Confidence 87
No 118
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.68 E-value=0.2 Score=47.49 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=38.1
Q ss_pred cccCCCeEEeecccc-cCChhhHHHHHHHHHHhcCCCceEEEEecCcc
Q psy16118 996 RYHPAPFFVLDEIDA-ALDNTNIGKVASYIVTKTQDSLQTIVISLKEE 1042 (1070)
Q Consensus 996 ~~~~~Pf~ilDEvda-~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~ 1042 (1070)
.+..++++||||+++ ++|......+..+|......+.-+|++||.+.
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 345778999999996 89999999999988776425678999998764
No 119
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.28 E-value=0.24 Score=53.13 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=37.7
Q ss_pred CCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc
Q psy16118 999 PAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE 1042 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~ 1042 (1070)
+.+++||||+|. ||......+.++|.+.. .++-||+|||.+.
T Consensus 134 ~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 134 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS 175 (354)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred CCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeCCHH
Confidence 456899999999 99999999999999987 8899999999864
No 120
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.11 E-value=0.25 Score=49.18 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=43.4
Q ss_pred eEEeecccccC--ChhhHHHHHHHHHHhcC-CCceEEEEecCc---------chHhhcchheeecc
Q psy16118 1002 FFVLDEIDAAL--DNTNIGKVASYIVTKTQ-DSLQTIVISLKE---------EFFSHADSLVGICP 1055 (1070)
Q Consensus 1002 f~ilDEvda~l--D~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~---------~~~~~ad~l~gVt~ 1055 (1070)
++||||+.+++ |...+..+...|+.++. .+.-+|+|||.. .+...||..+-+..
T Consensus 126 llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 126 RLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp EEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred EEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 89999999888 99999999999998853 467899999976 26677898776665
No 121
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=89.87 E-value=5 Score=33.90 Aligned_cols=46 Identities=9% Similarity=0.185 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCh
Q psy16118 273 SLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLES 319 (1070)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1070)
.+..+...+..+...+..+...+..+...+..+... ...|+++...
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~-g~~CPvCgs~ 56 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA-KGKCPVCGRE 56 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-SEECTTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCc
Confidence 333344444444445555566666666666665543 3346666543
No 122
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.74 E-value=6.6 Score=31.33 Aligned_cols=6 Identities=17% Similarity=0.462 Sum_probs=2.1
Q ss_pred HHhhhh
Q psy16118 721 EMNSVE 726 (1070)
Q Consensus 721 ~~~~l~ 726 (1070)
++..|.
T Consensus 55 ElEeLT 60 (97)
T 2eqb_B 55 EVEDLT 60 (97)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 123
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.44 E-value=3 Score=48.22 Aligned_cols=12 Identities=25% Similarity=0.457 Sum_probs=4.3
Q ss_pred hHHHHHHHHHHH
Q psy16118 416 SKNRVQELQKEL 427 (1070)
Q Consensus 416 ~~~~~~~l~~~~ 427 (1070)
.+..+..+..+.
T Consensus 556 ~~~~~~~l~~e~ 567 (597)
T 3oja_B 556 KRAKQAELRQET 567 (597)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 333333333333
No 124
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=88.83 E-value=0.076 Score=58.60 Aligned_cols=34 Identities=29% Similarity=0.526 Sum_probs=28.8
Q ss_pred CccccceecccccccCcccccCCCC-eEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i~df~~-l~lI~G~nGaG 38 (1070)
|.+..|++.||..|.+. .+ +|.+ +++|+||||||
T Consensus 38 m~l~~L~i~nf~~l~~v-~l-~~~~G~~~lvG~NGaG 72 (415)
T 4aby_A 38 PRLSRLEIRNLATITQL-EL-ELGGGFCAFTGETGAG 72 (415)
T ss_dssp CCCCEEEEEEETTEEEE-EE-ECCSSEEEEEESHHHH
T ss_pred cEeeeehhccccceeeE-EE-ecCCCcEEEECCCCCC
Confidence 66789999999999764 44 5765 99999999999
No 125
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=88.60 E-value=0.28 Score=58.14 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=44.7
Q ss_pred cccCCCeEEeecccccCChhhHHHH-HHHHHHhcC-CCceEEEEecCcchHhhcchheeec
Q psy16118 996 RYHPAPFFVLDEIDAALDNTNIGKV-ASYIVTKTQ-DSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 996 ~~~~~Pf~ilDEvda~lD~~n~~~~-~~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
...+.++++|||+.+++|......+ ..+|..+.. .+.=+|++||...+...||.+.+|.
T Consensus 683 ~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~ 743 (800)
T 1wb9_A 683 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVA 743 (800)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEE
T ss_pred hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceE
Confidence 3567789999999988888755543 566666642 2678999999999999999775553
No 126
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.23 E-value=0.43 Score=49.53 Aligned_cols=60 Identities=13% Similarity=0.203 Sum_probs=42.5
Q ss_pred ccCCCeEEeecccccC------Ch-hhHHHHHHHHHHhcC-CCceEEEEecCc-----------------------chHh
Q psy16118 997 YHPAPFFVLDEIDAAL------DN-TNIGKVASYIVTKTQ-DSLQTIVISLKE-----------------------EFFS 1045 (1070)
Q Consensus 997 ~~~~Pf~ilDEvda~l------D~-~n~~~~~~~l~~~~~-~~~Q~i~iT~~~-----------------------~~~~ 1045 (1070)
..+.+++||||+.+.+ |. ..+..++..|+.++. .+.=+|+|||.. .+..
T Consensus 145 ~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~ 224 (296)
T 1cr0_A 145 GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQ 224 (296)
T ss_dssp TTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHH
T ss_pred hcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHh
Confidence 4567799999999943 44 566788888988863 256899999984 4566
Q ss_pred hcchheeeccC
Q psy16118 1046 HADSLVGICPG 1056 (1070)
Q Consensus 1046 ~ad~l~gVt~~ 1056 (1070)
.||..+.+..+
T Consensus 225 ~aD~vi~L~~~ 235 (296)
T 1cr0_A 225 LSDTIIALERN 235 (296)
T ss_dssp HCSEEEEEEEC
T ss_pred hCcEEEEEecC
Confidence 89988777654
No 127
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.87 E-value=0.22 Score=50.33 Aligned_cols=59 Identities=10% Similarity=-0.040 Sum_probs=41.9
Q ss_pred ccCCCeEEeecccccCC-----hhhHHHHHHHHHHhcCCCceEEEEecCcchH----------hhc-chheeecc
Q psy16118 997 YHPAPFFVLDEIDAALD-----NTNIGKVASYIVTKTQDSLQTIVISLKEEFF----------SHA-DSLVGICP 1055 (1070)
Q Consensus 997 ~~~~Pf~ilDEvda~lD-----~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~----------~~a-d~l~gVt~ 1055 (1070)
....++++|||+.+++| ...+..+..++..+...+.=+|+|||..... ..| |.++-+..
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 34667999999999997 4555557788877742467899999986554 566 98776654
No 128
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.65 E-value=8.9 Score=30.26 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 783 LARAQGAEEKLAGEMRAEADKLENMRATRLTKKQAVDAMDEEIGKARREVGSIAKDIQAAQKS 845 (1070)
Q Consensus 783 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 845 (1070)
...+..++..+...+..+....+.-......++..+..+...+..+.-...+++.++..+..+
T Consensus 16 ~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 16 KARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333444444444444443333333344444333333
No 129
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.49 E-value=8.1 Score=33.77 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=4.3
Q ss_pred HhhHHHHHHHHH
Q psy16118 414 GSSKNRVQELQK 425 (1070)
Q Consensus 414 ~~~~~~~~~l~~ 425 (1070)
..++.++..++.
T Consensus 113 ~~l~~~~~~l~~ 124 (138)
T 3hnw_A 113 KELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 130
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=87.29 E-value=13 Score=31.63 Aligned_cols=36 Identities=11% Similarity=0.213 Sum_probs=16.2
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 106 HNETDIKELEDELDKKKGEVEKIERRKEKAENILRE 141 (1070)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 141 (1070)
.++..+..+..+-..+..++..++..++.+..+++.
T Consensus 24 ~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~ 59 (119)
T 3ol1_A 24 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 59 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 333444444444444444444444444444444443
No 131
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=86.94 E-value=0.086 Score=51.38 Aligned_cols=55 Identities=11% Similarity=0.091 Sum_probs=43.8
Q ss_pred cCCCeEEeecccccC----ChhhHHHHHHHHHHhcC-CCceEEEEecCcc-hHhhcchhee
Q psy16118 998 HPAPFFVLDEIDAAL----DNTNIGKVASYIVTKTQ-DSLQTIVISLKEE-FFSHADSLVG 1052 (1070)
Q Consensus 998 ~~~Pf~ilDEvda~l----D~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~-~~~~ad~l~g 1052 (1070)
.+.|+.+|||..+++ |...+.++.+++.++.. .+.-+|+|||... +...||.++-
T Consensus 140 ~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~ 200 (207)
T 1znw_A 140 APPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLV 200 (207)
T ss_dssp ECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC
T ss_pred ECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHH
Confidence 467789999999998 66788999999998852 3568999999854 5567998864
No 132
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.48 E-value=0.91 Score=44.46 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=41.9
Q ss_pred CCCeEEeecccccCChh--------hHHHHHHHHHHhcC-CCceEEEEecCcc--------------hHhhcchheeecc
Q psy16118 999 PAPFFVLDEIDAALDNT--------NIGKVASYIVTKTQ-DSLQTIVISLKEE--------------FFSHADSLVGICP 1055 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~--------n~~~~~~~l~~~~~-~~~Q~i~iT~~~~--------------~~~~ad~l~gVt~ 1055 (1070)
+.+++|+||+.+++|.. .+..++..|+.++. .+.-+|+|||... +...||..+.+..
T Consensus 105 ~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~ 184 (220)
T 2cvh_A 105 NFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDK 184 (220)
T ss_dssp TEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEE
T ss_pred CCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEE
Confidence 46789999999999863 22445555666652 2566999999654 4578999888877
Q ss_pred CC
Q psy16118 1056 GS 1057 (1070)
Q Consensus 1056 ~~ 1057 (1070)
.+
T Consensus 185 ~~ 186 (220)
T 2cvh_A 185 LP 186 (220)
T ss_dssp CS
T ss_pred ec
Confidence 53
No 133
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=85.43 E-value=0.65 Score=54.61 Aligned_cols=48 Identities=21% Similarity=0.247 Sum_probs=39.4
Q ss_pred ccCCCeEEeecc---cccCChhhH-HHHHHHHHHhcCCCceEEEEecCcchHhhc
Q psy16118 997 YHPAPFFVLDEI---DAALDNTNI-GKVASYIVTKTQDSLQTIVISLKEEFFSHA 1047 (1070)
Q Consensus 997 ~~~~Pf~ilDEv---da~lD~~n~-~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~a 1047 (1070)
..+.++++|||+ ++++|+..+ ..+.++|... +.=+|++||...+...|
T Consensus 653 a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~---g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 653 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHER---RAYTLFATHYFELTALG 704 (765)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHH---TCEEEEECCCHHHHTCC
T ss_pred ccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHhh
Confidence 567789999999 999999876 5788888763 45799999998887765
No 134
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=85.17 E-value=12 Score=29.46 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=9.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Q psy16118 408 ELNSDVGSSKNRVQELQKELEQVIE 432 (1070)
Q Consensus 408 ~l~~~~~~~~~~~~~l~~~~~~~~~ 432 (1070)
.++..++.+.-...+|+.++..+..
T Consensus 53 ~LrkdvD~a~l~r~dLE~kvesL~e 77 (86)
T 3swk_A 53 SFRQDVDNASLARLDLERKVESLQE 77 (86)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 135
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=84.22 E-value=0.81 Score=55.85 Aligned_cols=58 Identities=5% Similarity=0.106 Sum_probs=44.2
Q ss_pred hhhccccCCCeEEeecccccCChhh-HHHHHHHHHHhcCC-CceEEEEecCcchHhh-cch
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALDNTN-IGKVASYIVTKTQD-SLQTIVISLKEEFFSH-ADS 1049 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD~~n-~~~~~~~l~~~~~~-~~Q~i~iT~~~~~~~~-ad~ 1049 (1070)
+++....+.+++||||+.+++|... ...+..+|..+... ++=+|++||...+... +|.
T Consensus 861 ~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~ 921 (1022)
T 2o8b_B 861 SILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQN 921 (1022)
T ss_dssp HHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSC
T ss_pred HHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCc
Confidence 5565677888999999999999876 45567777777522 6789999999887765 443
No 136
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=84.10 E-value=0.8 Score=41.41 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=29.7
Q ss_pred CCCeEEeecccccCChhhHHHHHHHHHHhcCCCce-EEEEecC
Q psy16118 999 PAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQ-TIVISLK 1040 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q-~i~iT~~ 1040 (1070)
..+++||||+++ +|......+..+|..+...+.. +|++||.
T Consensus 83 ~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 83 EAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 467899999998 6665588888888876423355 6776664
No 137
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=81.09 E-value=45 Score=32.87 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=31.2
Q ss_pred HHHHhcCCc-ceecccccccchhhHHHHHHHHhccCCCeEEeCCHHHHHHH
Q psy16118 456 NFKKAYSGV-YDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLC 505 (1070)
Q Consensus 456 ~l~~~~~~~-~g~~~~~~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~~ 505 (1070)
.|...+.|+ ...+.+.|.+ ++ ++-+++.+|+..+++||.+...+...
T Consensus 115 ~LAe~~GGvlLseiYDDI~i-eD--ApyfsAlyGpar~AIVV~Dl~~~~~~ 162 (302)
T 3ibp_A 115 ALAERFGGVLLSEIYDDVSL-ED--APYFSALYGPSRHAIVVPDLSQVTEH 162 (302)
T ss_dssp HHHHHSSSEEHHHHSTTCCT-TT--HHHHHHHTGGGGSEEECSSCHHHHHH
T ss_pred HHHHHhCCEehhhhhcCCCh-hh--HHHHHHHhcccceeeEeCCHHHHHHH
Confidence 344455553 2444555542 22 66677889999999999999888653
No 138
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=80.84 E-value=0.83 Score=51.78 Aligned_cols=67 Identities=9% Similarity=-0.003 Sum_probs=52.5
Q ss_pred hhh-h-----hhhccccCCCeEEeecccccCChh-----hHHHHHHHHHHhcCCCceEEEEecCc----------c-hHh
Q psy16118 988 VST-T-----IVSHRYHPAPFFVLDEIDAALDNT-----NIGKVASYIVTKTQDSLQTIVISLKE----------E-FFS 1045 (1070)
Q Consensus 988 LSG-t-----~al~~~~~~Pf~ilDEvda~lD~~-----n~~~~~~~l~~~~~~~~Q~i~iT~~~----------~-~~~ 1045 (1070)
||| . +|.+.....+++||| ..++||.. .+..+..++..+...+.=+|+|||.. . +..
T Consensus 354 LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~ 432 (525)
T 1tf7_A 354 AGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHIST 432 (525)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTT
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccce
Confidence 777 2 777767788899999 99999999 99999998888753566799999986 3 445
Q ss_pred hcchheeecc
Q psy16118 1046 HADSLVGICP 1055 (1070)
Q Consensus 1046 ~ad~l~gVt~ 1055 (1070)
.||..+-+..
T Consensus 433 ~~D~vi~L~~ 442 (525)
T 1tf7_A 433 ITDTIILLQY 442 (525)
T ss_dssp TCSEEEEEEE
T ss_pred eeeEEEEEEE
Confidence 7898764444
No 139
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=79.75 E-value=42 Score=35.89 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy16118 388 LEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKE 426 (1070)
Q Consensus 388 l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~ 426 (1070)
|+..+..++..+...-.++..|+..|..+..+++.|+..
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444444444444444333
No 140
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=78.56 E-value=1.2 Score=46.59 Aligned_cols=58 Identities=9% Similarity=0.007 Sum_probs=43.1
Q ss_pred hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCc-eEEEEecCcchHhhcchheeeccCC
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSL-QTIVISLKEEFFSHADSLVGICPGS 1057 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~-Q~i~iT~~~~~~~~ad~l~gVt~~~ 1057 (1070)
+|.......|+++|||+.++ .+..+|..+. .+. =+|++||...+...+|+++.+..+.
T Consensus 233 la~aL~~~p~ilildE~~~~-------e~~~~l~~~~-~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 233 LKSCLRMRPDRIILGELRSS-------EAYDFYNVLC-SGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp HHHHTTSCCSEEEECCCCST-------HHHHHHHHHH-TTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred HHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh-cCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 44444667889999999972 2455677665 443 5899999999999999988766643
No 141
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=76.15 E-value=30 Score=28.17 Aligned_cols=19 Identities=5% Similarity=-0.032 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q psy16118 322 MTEYTNLKAEATKRAGKIL 340 (1070)
Q Consensus 322 ~~~~~~~~~~~~~~~~~l~ 340 (1070)
+..+...+..++..+....
T Consensus 26 i~~L~~~L~~AEeaL~~Kq 44 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQ 44 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 142
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=71.15 E-value=2 Score=42.27 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=39.2
Q ss_pred cCCCeEEeecccccCChhh------------HHHHHHHHHHhcC-CCceEEEEecC----cc-hHhhcchheeeccCC
Q psy16118 998 HPAPFFVLDEIDAALDNTN------------IGKVASYIVTKTQ-DSLQTIVISLK----EE-FFSHADSLVGICPGS 1057 (1070)
Q Consensus 998 ~~~Pf~ilDEvda~lD~~n------------~~~~~~~l~~~~~-~~~Q~i~iT~~----~~-~~~~ad~l~gVt~~~ 1057 (1070)
...++++|||+.+++|... +..++..|..++. .+.=+|+|||. .. +...||..+-+..+.
T Consensus 124 ~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 124 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp SCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred CceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 3455899999999998731 3466777776642 35679999993 33 455688887777643
No 143
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=70.25 E-value=3.1 Score=42.46 Aligned_cols=47 Identities=9% Similarity=0.086 Sum_probs=34.0
Q ss_pred cCCCeEEeecccc--cCChhhH---HHHHHHHHHhcC-CCceEEEEecCcchH
Q psy16118 998 HPAPFFVLDEIDA--ALDNTNI---GKVASYIVTKTQ-DSLQTIVISLKEEFF 1044 (1070)
Q Consensus 998 ~~~Pf~ilDEvda--~lD~~n~---~~~~~~l~~~~~-~~~Q~i~iT~~~~~~ 1044 (1070)
...+++||||+.+ ++|..+. ..++..|..++. .+.=+|+|||.....
T Consensus 132 ~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 132 EGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp TTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred CCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 3568999999999 8887544 778888888752 356799999976543
No 144
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=69.33 E-value=46 Score=27.28 Aligned_cols=22 Identities=5% Similarity=0.048 Sum_probs=8.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH
Q psy16118 342 QLDTINREQKGDQDKLDNELRQ 363 (1070)
Q Consensus 342 ~l~~~~~~~~~~~~~~~~~~~~ 363 (1070)
++...+..+.....+...++..
T Consensus 33 qLTqAQe~l~~~eaQAaTCNqT 54 (121)
T 3mq7_A 33 ELTEAQKGFQDVEAQAATANHT 54 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 145
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=67.44 E-value=47 Score=26.74 Aligned_cols=58 Identities=26% Similarity=0.321 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy16118 377 EMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEEL 434 (1070)
Q Consensus 377 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l 434 (1070)
+...+.-+++.+...+.+.+..+..++.+..+...++..+......+...+..+...+
T Consensus 24 EKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 24 EKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444445555555555555555555555555555555444
No 146
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=67.42 E-value=4.6 Score=38.07 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=19.3
Q ss_pred ccCCCeEEeeccccc--CChhhHHHHHHHHH
Q psy16118 997 YHPAPFFVLDEIDAA--LDNTNIGKVASYIV 1025 (1070)
Q Consensus 997 ~~~~Pf~ilDEvda~--lD~~n~~~~~~~l~ 1025 (1070)
..+.+++||||++.- +|......+.++|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 567789999998433 45555555555554
No 147
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=67.29 E-value=1.9 Score=43.40 Aligned_cols=11 Identities=64% Similarity=1.313 Sum_probs=5.9
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
+++|.||||||
T Consensus 39 ~~~liG~nGsG 49 (266)
T 4g1u_C 39 MVAIIGPNGAG 49 (266)
T ss_dssp EEEEECCTTSC
T ss_pred EEEEECCCCCc
Confidence 45555555555
No 148
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=67.24 E-value=44 Score=26.31 Aligned_cols=48 Identities=10% Similarity=0.156 Sum_probs=24.6
Q ss_pred HHhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 331 EATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEM 378 (1070)
Q Consensus 331 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (1070)
.+...+..++.++..++.++.....+...+-.-+..+..+|..++.-+
T Consensus 32 ~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLL 79 (86)
T 1x8y_A 32 TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333444445555555555555555555555555555555555555444
No 149
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=67.03 E-value=1.8 Score=43.63 Aligned_cols=11 Identities=45% Similarity=0.939 Sum_probs=7.0
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
+++|.||||||
T Consensus 34 ~~~liG~nGsG 44 (262)
T 1b0u_A 34 VISIIGSSGSG 44 (262)
T ss_dssp EEEEECCTTSS
T ss_pred EEEEECCCCCC
Confidence 56666666666
No 150
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=66.21 E-value=68 Score=28.07 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy16118 372 KKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQV 430 (1070)
Q Consensus 372 ~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 430 (1070)
..++.++..+..++..+...+......++.++.++..+.-+...++.++..++.+-..+
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444455555555554444333
No 151
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=65.81 E-value=1.7 Score=42.48 Aligned_cols=11 Identities=55% Similarity=1.162 Sum_probs=5.9
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
+++|.||||||
T Consensus 32 ~~~iiG~nGsG 42 (224)
T 2pcj_A 32 FVSIIGASGSG 42 (224)
T ss_dssp EEEEEECTTSC
T ss_pred EEEEECCCCCC
Confidence 45555555555
No 152
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=65.52 E-value=1.2e+02 Score=33.29 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=4.8
Q ss_pred HHHHHHHHhhhhh
Q psy16118 341 QQLDTINREQKGD 353 (1070)
Q Consensus 341 ~~l~~~~~~~~~~ 353 (1070)
++|.+.+.....+
T Consensus 404 ~~~~~~~~~~~~~ 416 (471)
T 3mq9_A 404 QELTEAQKGFQDV 416 (471)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHH
Confidence 3333333333333
No 153
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=63.07 E-value=1.7e+02 Score=31.54 Aligned_cols=9 Identities=11% Similarity=0.420 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy16118 212 LETQLADVR 220 (1070)
Q Consensus 212 ~~~~l~~l~ 220 (1070)
+...+..++
T Consensus 180 l~~ki~~l~ 188 (464)
T 1m1j_B 180 LHKKIQKLE 188 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 154
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=61.94 E-value=2.8 Score=42.41 Aligned_cols=11 Identities=55% Similarity=0.966 Sum_probs=5.4
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
+++|.||||||
T Consensus 36 ~~~iiGpnGsG 46 (275)
T 3gfo_A 36 VTAILGGNGVG 46 (275)
T ss_dssp EEEEECCTTSS
T ss_pred EEEEECCCCCC
Confidence 44445555554
No 155
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=61.62 E-value=1.6e+02 Score=30.93 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy16118 820 AMDEEIGKARREVGSIAKDIQAAQKSCVNLESKLEMKKSERHDILMNCK 868 (1070)
Q Consensus 820 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 868 (1070)
+++..+..+...+..--..++.|+..+..+..+|.+++..+....+.|+
T Consensus 115 eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr 163 (491)
T 1m1j_A 115 ELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRACK 163 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444444444444455555666666666666666666655555554
No 156
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=61.11 E-value=3 Score=45.76 Aligned_cols=6 Identities=33% Similarity=0.362 Sum_probs=2.5
Q ss_pred ccCChh
Q psy16118 1010 AALDNT 1015 (1070)
Q Consensus 1010 a~lD~~ 1015 (1070)
+.||++
T Consensus 418 vvlDEA 423 (483)
T 3euj_A 418 LFLDQA 423 (483)
T ss_dssp EEESSG
T ss_pred EEEecc
Confidence 344444
No 157
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=61.10 E-value=3.6 Score=38.93 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=6.4
Q ss_pred CCeEe-cCChHHHHhh
Q psy16118 566 NNALV-CETPEDAMKV 580 (1070)
Q Consensus 566 ~~~~~-~~~~~~a~~~ 580 (1070)
|..++ .-+...+..+
T Consensus 110 G~~vildid~qg~~~~ 125 (197)
T 3ney_A 110 NKIAILDIEPQTLKIV 125 (197)
T ss_dssp TCEEEEECCGGGHHHH
T ss_pred CCeEEEEECHHHHHHH
Confidence 44443 3344444444
No 158
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=60.45 E-value=72 Score=26.46 Aligned_cols=29 Identities=17% Similarity=0.207 Sum_probs=12.4
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy16118 332 ATKRAGKILQQLDTINREQKGDQDKLDNE 360 (1070)
Q Consensus 332 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 360 (1070)
++++-...+++|..++.++..++..++..
T Consensus 51 lqKRn~~HQKEi~~Lrae~~~~QRn~~K~ 79 (167)
T 4gkw_A 51 LQKRNVAHQKEIGKLRAELGTAQRNLEKA 79 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33333334444554544444444444333
No 159
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=59.34 E-value=6.9 Score=39.20 Aligned_cols=50 Identities=8% Similarity=0.052 Sum_probs=37.2
Q ss_pred cCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 998 HPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 998 ~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
.+.++++|||+. |...+..+.+. .. .+.=+|++||.......+|+++.+.
T Consensus 97 ~~p~illlDEp~---D~~~~~~~l~~---~~-~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 97 EDPDVIFVGEMR---DLETVETALRA---AE-TGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HCCSEEEESCCC---SHHHHHHHHHH---HH-TTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred hCCCEEEeCCCC---CHHHHHHHHHH---Hc-cCCEEEEEeCcchHHHHHHHHhhhc
Confidence 466799999998 88777655443 32 4556899999988888888876443
No 160
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=57.68 E-value=7.1 Score=44.03 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=42.6
Q ss_pred CCCeEEeeccccc-----CChhhHHHHHHHHHHhcCCCceEEEEecCcchH---------hh-cchheeec
Q psy16118 999 PAPFFVLDEIDAA-----LDNTNIGKVASYIVTKTQDSLQTIVISLKEEFF---------SH-ADSLVGIC 1054 (1070)
Q Consensus 999 ~~Pf~ilDEvda~-----lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~---------~~-ad~l~gVt 1054 (1070)
.....+|||+.+. +|...+..+..++..+...+.-+|+|||+...+ +. ||.++-+.
T Consensus 138 ~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~ 208 (525)
T 1tf7_A 138 RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 208 (525)
T ss_dssp TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEE
Confidence 3458899999885 477888899999988853467899999997763 33 89876443
No 161
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=57.55 E-value=45 Score=24.92 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16118 704 IEASMTARGDTISRKKE 720 (1070)
Q Consensus 704 l~~~~~~l~~~l~~l~~ 720 (1070)
++..+.+....|..|+.
T Consensus 45 LEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 45 LELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 162
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=57.22 E-value=4.7 Score=42.52 Aligned_cols=45 Identities=9% Similarity=0.228 Sum_probs=33.0
Q ss_pred cCCCeEEeecccccCChhh------------HHHHHHHHHHhcC-CCceEEEEecCcc
Q psy16118 998 HPAPFFVLDEIDAALDNTN------------IGKVASYIVTKTQ-DSLQTIVISLKEE 1042 (1070)
Q Consensus 998 ~~~Pf~ilDEvda~lD~~n------------~~~~~~~l~~~~~-~~~Q~i~iT~~~~ 1042 (1070)
.+.+++|+||+.+++|... +..++..|..++. .+.=+|+|||...
T Consensus 230 ~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp SCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred CCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 3567899999999998752 5677777777652 3567899999643
No 163
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=56.67 E-value=3.7 Score=41.20 Aligned_cols=11 Identities=64% Similarity=1.153 Sum_probs=5.5
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
+++|.||||||
T Consensus 52 i~~liG~NGsG 62 (263)
T 2olj_A 52 VVVVIGPSGSG 62 (263)
T ss_dssp EEEEECCTTSS
T ss_pred EEEEEcCCCCc
Confidence 44555555555
No 164
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=55.90 E-value=2.2e+02 Score=31.13 Aligned_cols=31 Identities=10% Similarity=0.069 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 359 NELRQQVQTQNEIKKKRHEMEEAQKRIDKLE 389 (1070)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 389 (1070)
.+++.+.+++..+.+++.+-......+-.|.
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEAQAATANHTVMALM 431 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcchhHHHHH
Confidence 3344444444444444444444444443333
No 165
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=55.27 E-value=95 Score=26.21 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16118 624 EMGNLKAQKEKLSEELREAM 643 (1070)
Q Consensus 624 ~l~~l~~~~~~l~~~~~~l~ 643 (1070)
.|..|..++..+..++..+.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~ 35 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMK 35 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67788888888777777654
No 166
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=55.08 E-value=74 Score=24.88 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=26.0
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 330 AEATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEM 378 (1070)
Q Consensus 330 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (1070)
..+...+..++.++..++.++.....+...+-.-+..+..+|..++.-+
T Consensus 29 ~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 29 ANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344444455555555555555555555555555555555555555433
No 167
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=54.77 E-value=2.3e+02 Score=30.50 Aligned_cols=13 Identities=0% Similarity=0.038 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy16118 334 KRAGKILQQLDTI 346 (1070)
Q Consensus 334 ~~~~~l~~~l~~~ 346 (1070)
..+.+|+..+..+
T Consensus 100 ~~LqeLe~~l~~l 112 (464)
T 1m1j_B 100 PVLRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3344444444443
No 168
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=51.66 E-value=35 Score=38.54 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhhccC
Q psy16118 885 KLAKSIQEMTSRLQTIQA 902 (1070)
Q Consensus 885 ~l~~~l~~l~~~l~~l~~ 902 (1070)
.++.+|..|..+|..+..
T Consensus 515 ~lq~qL~~L~~el~~~r~ 532 (575)
T 2i1j_A 515 RLHNQLKALKQDLARSCD 532 (575)
T ss_dssp HHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 567777777777777653
No 169
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=50.96 E-value=17 Score=39.75 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=32.8
Q ss_pred CCCeEEeecccccCCh-hhHHHHHHHHHHhcCCCceEEEEecCc
Q psy16118 999 PAPFFVLDEIDAALDN-TNIGKVASYIVTKTQDSLQTIVISLKE 1041 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~-~n~~~~~~~l~~~~~~~~Q~i~iT~~~ 1041 (1070)
..+++++|||+...+. .....|..++..+...+.++|++||++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 5568999999998875 456667777777543568999999984
No 170
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=50.52 E-value=13 Score=36.54 Aligned_cols=44 Identities=5% Similarity=0.149 Sum_probs=27.8
Q ss_pred cCCCeEEeecccccCChh-------h-----HHHHHHHHHHhcC-CCceEEEEecCc
Q psy16118 998 HPAPFFVLDEIDAALDNT-------N-----IGKVASYIVTKTQ-DSLQTIVISLKE 1041 (1070)
Q Consensus 998 ~~~Pf~ilDEvda~lD~~-------n-----~~~~~~~l~~~~~-~~~Q~i~iT~~~ 1041 (1070)
.+.+++|+||+.+.+|.. . +..++..|..++. .+.=+|+|||..
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~ 174 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV 174 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC---
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee
Confidence 355689999999999874 2 4556666666542 256799999953
No 171
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=49.96 E-value=14 Score=35.21 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=35.6
Q ss_pred cCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEec--CcchHhhcch
Q psy16118 998 HPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISL--KEEFFSHADS 1049 (1070)
Q Consensus 998 ~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~--~~~~~~~ad~ 1049 (1070)
....++|+||+|..+|......+..++..+. +..|+|+.|= .+.+...+..
T Consensus 145 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~-~~~~~l~~SAT~~~~~~~~~~~ 197 (206)
T 1vec_A 145 DHVQMIVLDEADKLLSQDFVQIMEDIILTLP-KNRQILLYSATFPLSVQKFMNS 197 (206)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHSC-TTCEEEEEESCCCHHHHHHHHH
T ss_pred ccCCEEEEEChHHhHhhCcHHHHHHHHHhCC-ccceEEEEEeeCCHHHHHHHHH
Confidence 3456899999999888776666666666664 6889998874 3444444443
No 172
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=49.79 E-value=1.1e+02 Score=25.20 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16118 825 IGKARREVGSIAKDIQAAQKSC 846 (1070)
Q Consensus 825 ~~~~~~~~~~l~~~~~~l~~~~ 846 (1070)
+.++..++..+...+.....++
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~ 94 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEV 94 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 173
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=49.10 E-value=5.6 Score=41.88 Aligned_cols=11 Identities=55% Similarity=1.283 Sum_probs=10.7
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
+++|.||||||
T Consensus 31 ~~~llGpnGsG 41 (359)
T 2yyz_A 31 FVALLGPSGCG 41 (359)
T ss_dssp EEEEECSTTSS
T ss_pred EEEEEcCCCch
Confidence 89999999999
No 174
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=49.01 E-value=6.5 Score=41.47 Aligned_cols=11 Identities=64% Similarity=1.328 Sum_probs=10.7
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
+++|.||||||
T Consensus 31 ~~~llGpnGsG 41 (362)
T 2it1_A 31 FMALLGPSGSG 41 (362)
T ss_dssp EEEEECCTTSS
T ss_pred EEEEECCCCch
Confidence 89999999999
No 175
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=48.77 E-value=15 Score=37.69 Aligned_cols=52 Identities=8% Similarity=0.050 Sum_probs=34.3
Q ss_pred hhh---hhhhccccCCC--eEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh
Q psy16118 988 VST---TIVSHRYHPAP--FFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS 1045 (1070)
Q Consensus 988 LSG---t~al~~~~~~P--f~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~ 1045 (1070)
||- .+|.....+.+ ++||| +.+++|..+..+ -+..- .+.-+|||||-+.+..
T Consensus 205 LSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~---~~~~~--~g~t~iiiThlD~~~~ 261 (302)
T 3b9q_A 205 LIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAR---EFNEV--VGITGLILTKLDGSAR 261 (302)
T ss_dssp HHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHH---HHHHH--TCCCEEEEECCSSCSC
T ss_pred HHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHH---HHHHh--cCCCEEEEeCCCCCCc
Confidence 665 14444445566 89999 999999986532 23222 2567899999887543
No 176
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=48.42 E-value=18 Score=37.97 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=39.9
Q ss_pred hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeec
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
+|-......++++|||+. |......+.+. +..+.-+|++||.......+|+++.+.
T Consensus 189 La~aL~~~PdvillDEp~---d~e~~~~~~~~----~~~G~~vl~t~H~~~~~~~~dRli~l~ 244 (356)
T 3jvv_A 189 LRSALREDPDIILVGEMR---DLETIRLALTA----AETGHLVFGTLHTTSAAKTIDRVVDVF 244 (356)
T ss_dssp HHHHTTSCCSEEEESCCC---SHHHHHHHHHH----HHTTCEEEEEESCSSHHHHHHHHHHTS
T ss_pred HHHHhhhCcCEEecCCCC---CHHHHHHHHHH----HhcCCEEEEEEccChHHHHHHHHhhhc
Confidence 555556677899999998 65544443333 224556999999999999999987654
No 177
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=48.16 E-value=6.7 Score=36.24 Aligned_cols=11 Identities=45% Similarity=0.945 Sum_probs=7.2
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
+++|+||||||
T Consensus 11 i~~l~G~nGsG 21 (171)
T 4gp7_A 11 LVVLIGSSGSG 21 (171)
T ss_dssp EEEEECCTTSC
T ss_pred EEEEECCCCCC
Confidence 56666666666
No 178
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=47.35 E-value=3.8 Score=43.19 Aligned_cols=11 Identities=36% Similarity=0.921 Sum_probs=10.5
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
+++|.||||||
T Consensus 33 ~~~llGpnGsG 43 (353)
T 1oxx_K 33 RFGILGPSGAG 43 (353)
T ss_dssp EEEEECSCHHH
T ss_pred EEEEECCCCCc
Confidence 89999999999
No 179
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=47.06 E-value=6.3 Score=41.77 Aligned_cols=31 Identities=23% Similarity=0.558 Sum_probs=19.4
Q ss_pred ceeccccc-ccCccccc--CCC--C--eEEEEcCCCCc
Q psy16118 8 IEVDNFKS-YKGKFSIG--PLK--K--FTAVIGPNGSG 38 (1070)
Q Consensus 8 L~l~~F~~-y~~~~~i~--df~--~--l~lI~G~nGaG 38 (1070)
|++.|..- |.+...+. +|+ + +++|.||||||
T Consensus 4 l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsG 41 (381)
T 3rlf_A 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCG 41 (381)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSS
T ss_pred EEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCch
Confidence 66666543 33333331 343 2 89999999999
No 180
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=46.32 E-value=9.9 Score=37.73 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=10.6
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
+++|+||||||
T Consensus 32 ~~~l~GpnGsG 42 (251)
T 2ehv_A 32 TVLLTGGTGTG 42 (251)
T ss_dssp EEEEECCTTSS
T ss_pred EEEEEeCCCCC
Confidence 89999999999
No 181
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=45.40 E-value=3.2e+02 Score=29.36 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy16118 192 KKSLVEVRQANEAHNKDIADLETQLADVRKRKAEY 226 (1070)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 226 (1070)
...+...+..+...+..+...+..+......++.+
T Consensus 72 ~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ 106 (497)
T 3iox_A 72 QADLAKYQKDLADYPVKLKAYEDEQTSIKAALAEL 106 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444333333
No 182
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=44.30 E-value=1.4e+02 Score=24.94 Aligned_cols=14 Identities=14% Similarity=0.342 Sum_probs=5.0
Q ss_pred HhhHHHHHHHHHHH
Q psy16118 414 GSSKNRVQELQKEL 427 (1070)
Q Consensus 414 ~~~~~~~~~l~~~~ 427 (1070)
..+...+..+...+
T Consensus 87 ~~le~~~~~l~~~l 100 (117)
T 2zqm_A 87 NALERQEKKLNEKL 100 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 183
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=44.05 E-value=7 Score=41.06 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=18.8
Q ss_pred ceecccccccC-ccccc--CCC--C--eEEEEcCCCCc
Q psy16118 8 IEVDNFKSYKG-KFSIG--PLK--K--FTAVIGPNGSG 38 (1070)
Q Consensus 8 L~l~~F~~y~~-~~~i~--df~--~--l~lI~G~nGaG 38 (1070)
|++.|..-..| ...+. +|+ + +++|.||||||
T Consensus 5 l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsG 42 (359)
T 3fvq_A 5 LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCG 42 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSS
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCch
Confidence 66666543333 33331 343 2 89999999999
No 184
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=43.92 E-value=9.6 Score=37.49 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=37.2
Q ss_pred CCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEe--cCcchHhhcchh
Q psy16118 999 PAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVIS--LKEEFFSHADSL 1050 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT--~~~~~~~~ad~l 1050 (1070)
..-++|+||+|..+|......+..++..+. ...|+|+.| ..+.+...+..+
T Consensus 173 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~ 225 (237)
T 3bor_A 173 WIKMFVLDEADEMLSRGFKDQIYEIFQKLN-TSIQVVLLSATMPTDVLEVTKKF 225 (237)
T ss_dssp TCCEEEEESHHHHHHTTCHHHHHHHHHHSC-TTCEEEEECSSCCHHHHHHHHHH
T ss_pred cCcEEEECCchHhhccCcHHHHHHHHHhCC-CCCeEEEEEEecCHHHHHHHHHH
Confidence 345799999998887766666777777775 788999886 455566655554
No 185
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=43.84 E-value=8.2 Score=40.85 Aligned_cols=31 Identities=23% Similarity=0.651 Sum_probs=19.1
Q ss_pred ceecccc-cccCccccc--CCC--C--eEEEEcCCCCc
Q psy16118 8 IEVDNFK-SYKGKFSIG--PLK--K--FTAVIGPNGSG 38 (1070)
Q Consensus 8 L~l~~F~-~y~~~~~i~--df~--~--l~lI~G~nGaG 38 (1070)
|++.|.. .|.+...+. +|+ + +++|.||||||
T Consensus 12 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsG 49 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCG 49 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSS
T ss_pred EEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCCh
Confidence 6666654 343332221 343 2 89999999999
No 186
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=43.14 E-value=12 Score=36.39 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=35.6
Q ss_pred CCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEec--CcchHhhcc
Q psy16118 999 PAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISL--KEEFFSHAD 1048 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~--~~~~~~~ad 1048 (1070)
..-++|+||+|..+|......+..++..+. +..|+|+.|= .+.+...+.
T Consensus 167 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~-~~~~~l~~SAT~~~~~~~~~~ 217 (228)
T 3iuy_A 167 SITYLVIDEADKMLDMEFEPQIRKILLDVR-PDRQTVMTSATWPDTVRQLAL 217 (228)
T ss_dssp TCCEEEECCHHHHHHTTCHHHHHHHHHHSC-SSCEEEEEESCCCHHHHHHHH
T ss_pred cceEEEEECHHHHhccchHHHHHHHHHhCC-cCCeEEEEEeeCCHHHHHHHH
Confidence 345799999998888777777777787775 7899999763 344444443
No 187
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=42.64 E-value=29 Score=39.14 Aligned_cols=15 Identities=7% Similarity=0.224 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy16118 913 HAKENLMKTNEEFEN 927 (1070)
Q Consensus 913 ~~~~~~~~l~~~~~~ 927 (1070)
.++.++..|...++.
T Consensus 515 ~lq~qL~~L~~el~~ 529 (575)
T 2i1j_A 515 RLHNQLKALKQDLAR 529 (575)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 188
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=42.64 E-value=6.9 Score=41.47 Aligned_cols=11 Identities=45% Similarity=1.168 Sum_probs=10.7
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
+++|.||||||
T Consensus 31 ~~~llGpnGsG 41 (372)
T 1g29_1 31 FMILLGPSGCG 41 (372)
T ss_dssp EEEEECSTTSS
T ss_pred EEEEECCCCcH
Confidence 89999999999
No 189
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=42.05 E-value=8 Score=38.89 Aligned_cols=11 Identities=64% Similarity=1.247 Sum_probs=4.8
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
+++|.||||||
T Consensus 48 ~~~l~G~NGsG 58 (267)
T 2zu0_C 48 VHAIMGPNGSG 58 (267)
T ss_dssp EEEEECCTTSS
T ss_pred EEEEECCCCCC
Confidence 34444444444
No 190
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=42.01 E-value=9.9 Score=36.79 Aligned_cols=52 Identities=29% Similarity=0.347 Sum_probs=37.3
Q ss_pred cCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEe--cCcchHhhcchh
Q psy16118 998 HPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVIS--LKEEFFSHADSL 1050 (1070)
Q Consensus 998 ~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT--~~~~~~~~ad~l 1050 (1070)
....++|+||+|..+|......+..++..+. ...|+|+.| +.+.+...+..+
T Consensus 149 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~-~~~~~l~~SAT~~~~~~~~~~~~ 202 (219)
T 1q0u_A 149 HTAHILVVDEADLMLDMGFITDVDQIAARMP-KDLQMLVFSATIPEKLKPFLKKY 202 (219)
T ss_dssp GGCCEEEECSHHHHHHTTCHHHHHHHHHTSC-TTCEEEEEESCCCGGGHHHHHHH
T ss_pred CcceEEEEcCchHHhhhChHHHHHHHHHhCC-cccEEEEEecCCCHHHHHHHHHH
Confidence 3446799999999887776677777777665 678999885 555555555543
No 191
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=41.99 E-value=23 Score=34.63 Aligned_cols=40 Identities=8% Similarity=0.294 Sum_probs=31.7
Q ss_pred CeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc
Q psy16118 1001 PFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE 1042 (1070)
Q Consensus 1001 Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~ 1042 (1070)
.++|+||+|. +|......+..++.... ...-||++|+++.
T Consensus 128 ~vlviDe~~~-l~~~~~~~l~~~l~~~~-~~~~~i~~t~~~~ 167 (250)
T 1njg_A 128 KVYLIDEVHM-LSRHSFNALLKTLEEPP-EHVKFLLATTDPQ 167 (250)
T ss_dssp EEEEEETGGG-SCHHHHHHHHHHHHSCC-TTEEEEEEESCGG
T ss_pred eEEEEECccc-ccHHHHHHHHHHHhcCC-CceEEEEEeCChH
Confidence 3689999997 78777788888887664 6788999998765
No 192
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=41.34 E-value=1.2e+02 Score=23.22 Aligned_cols=9 Identities=11% Similarity=0.294 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy16118 374 KRHEMEEAQ 382 (1070)
Q Consensus 374 l~~~~~~~~ 382 (1070)
.+.+++.+.
T Consensus 23 ~qaEl~sLr 31 (78)
T 3iv1_A 23 AQAELNALK 31 (78)
T ss_dssp HHHHHHHHH
T ss_pred HhHHHHHHH
Confidence 333333333
No 193
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=40.72 E-value=8.5 Score=38.96 Aligned_cols=11 Identities=36% Similarity=0.483 Sum_probs=7.9
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
+++|.||||||
T Consensus 49 ~~~liG~NGsG 59 (279)
T 2ihy_A 49 KWILYGLNGAG 59 (279)
T ss_dssp EEEEECCTTSS
T ss_pred EEEEECCCCCc
Confidence 67777777777
No 194
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=40.29 E-value=30 Score=33.90 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=39.3
Q ss_pred CCCeEEeecccccC--ChhhHHHHHHHHHHhcC-CCceEEEEecCcc---------hHhhcchheeeccC
Q psy16118 999 PAPFFVLDEIDAAL--DNTNIGKVASYIVTKTQ-DSLQTIVISLKEE---------FFSHADSLVGICPG 1056 (1070)
Q Consensus 999 ~~Pf~ilDEvda~l--D~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~---------~~~~ad~l~gVt~~ 1056 (1070)
+..++|+|++.+.+ |...+..++..|..++. .+.-+|++||... ....||..+.+...
T Consensus 128 ~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~~ 197 (247)
T 2dr3_A 128 NAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDLD 197 (247)
T ss_dssp TCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEEE
T ss_pred CCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEEE
Confidence 45689999999988 55555566555555532 4567999999654 35677887766653
No 195
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=40.09 E-value=13 Score=35.34 Aligned_cols=51 Identities=25% Similarity=0.179 Sum_probs=36.1
Q ss_pred CCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEe--cCcchHhhcchh
Q psy16118 999 PAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVIS--LKEEFFSHADSL 1050 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT--~~~~~~~~ad~l 1050 (1070)
..-++|+||++..+|......+..++..+. ...|+|+.| +.+.+...++.+
T Consensus 144 ~~~~iViDEah~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~ 196 (207)
T 2gxq_A 144 RVEVAVLDEADEMLSMGFEEEVEALLSATP-PSRQTLLFSATLPSWAKRLAERY 196 (207)
T ss_dssp TCSEEEEESHHHHHHTTCHHHHHHHHHTSC-TTSEEEEECSSCCHHHHHHHHHH
T ss_pred hceEEEEEChhHhhccchHHHHHHHHHhCC-ccCeEEEEEEecCHHHHHHHHHH
Confidence 445799999998888776666777776664 788999986 445455555443
No 196
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=39.49 E-value=25 Score=38.61 Aligned_cols=54 Identities=13% Similarity=0.254 Sum_probs=31.1
Q ss_pred hhhccccCCCeEEeeccccc----------CChhhHHHHHHHHHHhcC----CCceEEEEecCcchHh
Q psy16118 992 IVSHRYHPAPFFVLDEIDAA----------LDNTNIGKVASYIVTKTQ----DSLQTIVISLKEEFFS 1045 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~----------lD~~n~~~~~~~l~~~~~----~~~Q~i~iT~~~~~~~ 1045 (1070)
|+........+++|||||+- .|......+..+|..+-+ ...=||..||++..+.
T Consensus 101 f~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 101 FAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 55544333347889999984 344444556666665521 2345777788876543
No 197
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=39.35 E-value=2.7e+02 Score=27.06 Aligned_cols=11 Identities=9% Similarity=0.350 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q psy16118 887 AKSIQEMTSRL 897 (1070)
Q Consensus 887 ~~~l~~l~~~l 897 (1070)
...+..++..+
T Consensus 153 ~~~veelk~~l 163 (243)
T 2a01_A 153 RAHVDALRTHL 163 (243)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334443333
No 198
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=39.09 E-value=27 Score=39.99 Aligned_cols=45 Identities=11% Similarity=0.080 Sum_probs=34.8
Q ss_pred cCCCeEEeecc------cccCChhhHHHHHHHHHHhcC--CCceEEEEecCcc
Q psy16118 998 HPAPFFVLDEI------DAALDNTNIGKVASYIVTKTQ--DSLQTIVISLKEE 1042 (1070)
Q Consensus 998 ~~~Pf~ilDEv------da~lD~~n~~~~~~~l~~~~~--~~~Q~i~iT~~~~ 1042 (1070)
...++.++||+ .+++|......+..++..+.. ...=++++||+..
T Consensus 145 ~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 145 DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccch
Confidence 33568999999 999999999999999999642 2456778888754
No 199
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=38.61 E-value=22 Score=33.36 Aligned_cols=55 Identities=24% Similarity=0.321 Sum_probs=40.2
Q ss_pred cCCCeEEeecccc--cCChhhHHHHHHHHHHhcCCCceEEEEecC---cchHhhcchheeec
Q psy16118 998 HPAPFFVLDEIDA--ALDNTNIGKVASYIVTKTQDSLQTIVISLK---EEFFSHADSLVGIC 1054 (1070)
Q Consensus 998 ~~~Pf~ilDEvda--~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~---~~~~~~ad~l~gVt 1054 (1070)
....++||||+-. .++-.....+.++|... +..+-+|||=| +.+++.||..--+.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R--p~~~~vIlTGr~ap~~l~e~AD~VTem~ 178 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNAR--PGHQTVIITGRGCHRDILDLADTVSELR 178 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS--CTTCEEEEECSSCCHHHHHHCSEEEECC
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhC--cCCCEEEEECCCCcHHHHHhCcceeeec
Confidence 3456899999976 45556667788888754 67788888866 67999999854433
No 200
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=38.51 E-value=17 Score=35.19 Aligned_cols=51 Identities=16% Similarity=0.289 Sum_probs=36.9
Q ss_pred CCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEe--cCcchHhhcchh
Q psy16118 999 PAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVIS--LKEEFFSHADSL 1050 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT--~~~~~~~~ad~l 1050 (1070)
..-++|+||++..+|......+..++..+. ...|+|+.| +.+.+...+..+
T Consensus 155 ~~~~iViDEah~~~~~~~~~~l~~i~~~~~-~~~~~i~lSAT~~~~~~~~~~~~ 207 (224)
T 1qde_A 155 KIKMFILDEADEMLSSGFKEQIYQIFTLLP-PTTQVVLLSATMPNDVLEVTTKF 207 (224)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHHSC-TTCEEEEEESSCCHHHHHHHHHH
T ss_pred hCcEEEEcChhHHhhhhhHHHHHHHHHhCC-ccCeEEEEEeecCHHHHHHHHHH
Confidence 345799999998887766666777777665 788998886 455555555554
No 201
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=38.18 E-value=26 Score=34.22 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=29.0
Q ss_pred ccCCCeEEeecccc-cCChhhHHHHHHHHHHhcCCCceEEEEe
Q psy16118 997 YHPAPFFVLDEIDA-ALDNTNIGKVASYIVTKTQDSLQTIVIS 1038 (1070)
Q Consensus 997 ~~~~Pf~ilDEvda-~lD~~n~~~~~~~l~~~~~~~~Q~i~iT 1038 (1070)
....-++||||+|. ++|........+.+.... ++.|+|+.|
T Consensus 174 l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~S 215 (235)
T 3llm_A 174 IRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMS 215 (235)
T ss_dssp CTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEE
T ss_pred hcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEe
Confidence 45667999999997 466665544444455554 788999887
No 202
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=37.34 E-value=33 Score=36.69 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=29.6
Q ss_pred CCCeEEeecccccCChhhH------------HHHHHHHHHhcC-CCceEEEEecC
Q psy16118 999 PAPFFVLDEIDAALDNTNI------------GKVASYIVTKTQ-DSLQTIVISLK 1040 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~------------~~~~~~l~~~~~-~~~Q~i~iT~~ 1040 (1070)
...++|+|++.+.+|.... ..++..|+.++. .+.=+|+|||.
T Consensus 273 ~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 273 RFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp CEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 4457899999999985432 567777777763 35689999997
No 203
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=37.15 E-value=23 Score=37.17 Aligned_cols=51 Identities=8% Similarity=0.016 Sum_probs=33.8
Q ss_pred hhhccccCCC--eEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcc
Q psy16118 992 IVSHRYHPAP--FFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHAD 1048 (1070)
Q Consensus 992 ~al~~~~~~P--f~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad 1048 (1070)
+|.......+ ++||| ..+++|..+..+ -+... .+.-+|||||.+.+...+.
T Consensus 269 iaral~~~P~e~lLvLD-pttglD~~~~~~---~~~~~--~g~t~iiiThlD~~~~gG~ 321 (359)
T 2og2_A 269 VGKIVSGAPNEILLVLD-GNTGLNMLPQAR---EFNEV--VGITGLILTKLDGSARGGC 321 (359)
T ss_dssp HHHHSTTCCSEEEEEEE-GGGGGGGHHHHH---HHHHH--TCCCEEEEESCTTCSCTHH
T ss_pred HHHHHhcCCCceEEEEc-CCCCCCHHHHHH---HHHHh--cCCeEEEEecCcccccccH
Confidence 4444445566 89999 999999987632 23222 2567899999887644433
No 204
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=36.98 E-value=12 Score=37.32 Aligned_cols=10 Identities=20% Similarity=0.321 Sum_probs=4.2
Q ss_pred HHHHHHHHhc
Q psy16118 479 YNVAITKVLG 488 (1070)
Q Consensus 479 ~~~aie~~l~ 488 (1070)
|..++..++.
T Consensus 87 l~~~la~aL~ 96 (261)
T 2eyu_A 87 FADALRAALR 96 (261)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3444444443
No 205
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=36.97 E-value=2.4e+02 Score=25.48 Aligned_cols=55 Identities=9% Similarity=0.212 Sum_probs=30.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 173 SLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYE 227 (1070)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 227 (1070)
++..+......+...+..+......+...+.........+..++..+..++-.+.
T Consensus 90 E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~ 144 (170)
T 3l4q_C 90 EMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLR 144 (170)
T ss_dssp STTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4444555555556666665555555555555555555555555555555444443
No 206
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=36.27 E-value=17 Score=40.24 Aligned_cols=43 Identities=16% Similarity=0.337 Sum_probs=28.5
Q ss_pred CCC--eEEeecccccCChhhHHHHHHHHH---HhcC-CCceEEEEecCcc
Q psy16118 999 PAP--FFVLDEIDAALDNTNIGKVASYIV---TKTQ-DSLQTIVISLKEE 1042 (1070)
Q Consensus 999 ~~P--f~ilDEvda~lD~~n~~~~~~~l~---~~~~-~~~Q~i~iT~~~~ 1042 (1070)
+-| |+|+||+.+.+|... ..+..+|. ..++ -+.=+|++||++.
T Consensus 295 ~lP~ivlvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 295 KEPYIVVLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp CCCEEEEEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred cCCcEEEEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 456 588999999998432 23334443 3332 2567899999988
No 207
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=36.13 E-value=13 Score=38.20 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=34.2
Q ss_pred cCCCeEEeecccccCCh-hhHHHHHHHHHHhcCCCceEEEEe--cCcchHhhcchh
Q psy16118 998 HPAPFFVLDEIDAALDN-TNIGKVASYIVTKTQDSLQTIVIS--LKEEFFSHADSL 1050 (1070)
Q Consensus 998 ~~~Pf~ilDEvda~lD~-~n~~~~~~~l~~~~~~~~Q~i~iT--~~~~~~~~ad~l 1050 (1070)
...-|+||||+|..+|. .....+..++..+. ...|+|+.| ..+.+...|..+
T Consensus 234 ~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~-~~~q~i~~SAT~~~~v~~~a~~~ 288 (300)
T 3fmo_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLP-RNCQMLLFSATFEDSVWKFAQKV 288 (300)
T ss_dssp GGCSEEEETTHHHHHHSTTHHHHHHHHHTTSC-TTCEEEEEESCCCHHHHHHHHHH
T ss_pred hhceEEEEeCHHHHhhccCcHHHHHHHHHhCC-CCCEEEEEeccCCHHHHHHHHHH
Confidence 45568999999998873 44444444444443 778999975 456666665543
No 208
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=36.10 E-value=19 Score=35.16 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=34.4
Q ss_pred CCCeEEeecccccCChh-hHHHHHHHHHHhcCCCceEEEEe--cCcchHhhcchh
Q psy16118 999 PAPFFVLDEIDAALDNT-NIGKVASYIVTKTQDSLQTIVIS--LKEEFFSHADSL 1050 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~-n~~~~~~~l~~~~~~~~Q~i~iT--~~~~~~~~ad~l 1050 (1070)
..-++|+||+|..+|.. ....+..++..+. ...|+|+.| ..+.+...+..+
T Consensus 166 ~~~~lViDEah~~~~~~~~~~~~~~i~~~~~-~~~~~l~lSAT~~~~~~~~~~~~ 219 (230)
T 2oxc_A 166 SIRLFILDEADKLLEEGSFQEQINWIYSSLP-ASKQMLAVSATYPEFLANALTKY 219 (230)
T ss_dssp GCCEEEESSHHHHHSTTSSHHHHHHHHHHSC-SSCEEEEEESCCCHHHHHHHTTT
T ss_pred cCCEEEeCCchHhhcCcchHHHHHHHHHhCC-CCCeEEEEEeccCHHHHHHHHHH
Confidence 34479999999988864 5666666666664 678988886 344444444443
No 209
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=34.97 E-value=14 Score=36.33 Aligned_cols=8 Identities=13% Similarity=-0.064 Sum_probs=3.5
Q ss_pred CChHHHHh
Q psy16118 572 ETPEDAMK 579 (1070)
Q Consensus 572 ~~~~~a~~ 579 (1070)
.+++.+..
T Consensus 185 Hd~~~~~~ 192 (240)
T 2onk_A 185 HDLIEAAM 192 (240)
T ss_dssp SCHHHHHH
T ss_pred CCHHHHHH
Confidence 34444443
No 210
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=34.88 E-value=43 Score=31.94 Aligned_cols=42 Identities=21% Similarity=0.187 Sum_probs=31.6
Q ss_pred CCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc
Q psy16118 999 PAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE 1042 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~ 1042 (1070)
+..++|+||+|. ++......+..++.... ....||++|..+.
T Consensus 102 ~~~vliiDe~~~-l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~ 143 (226)
T 2chg_A 102 PFKIIFLDEADA-LTADAQAALRRTMEMYS-KSCRFILSCNYVS 143 (226)
T ss_dssp SCEEEEEETGGG-SCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred CceEEEEeChhh-cCHHHHHHHHHHHHhcC-CCCeEEEEeCChh
Confidence 334789999996 45566777888888775 7788998887654
No 211
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=34.81 E-value=1.8e+02 Score=23.38 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16118 339 ILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKK 374 (1070)
Q Consensus 339 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 374 (1070)
++.++..++.++.....+...+-.-+..+..+|..+
T Consensus 49 lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatY 84 (95)
T 3mov_A 49 KEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAY 84 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333333333333333333333333
No 212
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=34.71 E-value=6.5 Score=42.29 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=36.4
Q ss_pred CCeEEeecccccCChhhHHHHHHHHHHhc-----C---CCce-EEEEecCcc---hHhhcchhee
Q psy16118 1000 APFFVLDEIDAALDNTNIGKVASYIVTKT-----Q---DSLQ-TIVISLKEE---FFSHADSLVG 1052 (1070)
Q Consensus 1000 ~Pf~ilDEvda~lD~~n~~~~~~~l~~~~-----~---~~~Q-~i~iT~~~~---~~~~ad~l~g 1052 (1070)
.++++|||+.++||..++..+.++|+.+. . +... |+|-||... +=..+|.++.
T Consensus 185 pdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~ 249 (413)
T 1tq4_A 185 VDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLIS 249 (413)
T ss_dssp HHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHH
T ss_pred CcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHH
Confidence 34567999999999999999999998873 0 1234 445566433 5555666543
No 213
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=34.69 E-value=19 Score=36.10 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=34.6
Q ss_pred hhh--h--hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHh
Q psy16118 988 VST--T--IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFS 1045 (1070)
Q Consensus 988 LSG--t--~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~ 1045 (1070)
||| . +++.++.. .+++|||.+.+||+..+ .+++.+. ...=+|+|.|+--++.
T Consensus 99 LS~G~~qrv~iaRal~-~lllldep~~gL~~lD~----~~l~~L~-~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 99 VNIARKKRIPDTRVHC-CLYFISPTGHSLRPLDL----EFMKHLS-KVVNIIPVIAKADTMT 154 (270)
T ss_dssp SCTTCCSSCCCCSCCE-EEEEECCCSSSCCHHHH----HHHHHHH-TTSEEEEEETTGGGSC
T ss_pred cCcccchhhhhheeee-eeEEEecCCCcCCHHHH----HHHHHHH-hcCcEEEEEeccccCC
Confidence 777 2 56655533 38999999999998873 3444554 3367777777754443
No 214
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=34.07 E-value=19 Score=35.26 Aligned_cols=50 Identities=24% Similarity=0.202 Sum_probs=35.6
Q ss_pred CCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEe--cCcchHhhcch
Q psy16118 999 PAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVIS--LKEEFFSHADS 1049 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT--~~~~~~~~ad~ 1049 (1070)
..-++|+||+|..+|......+..++..+. ...|+|+.| ..+.+...+..
T Consensus 171 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~-~~~~~l~~SAT~~~~~~~~~~~ 222 (236)
T 2pl3_A 171 DLQMLVLDEADRILDMGFADTMNAVIENLP-KKRQTLLFSATQTKSVKDLARL 222 (236)
T ss_dssp TCCEEEETTHHHHHHTTTHHHHHHHHHTSC-TTSEEEEEESSCCHHHHHHHHH
T ss_pred cccEEEEeChHHHhcCCcHHHHHHHHHhCC-CCCeEEEEEeeCCHHHHHHHHH
Confidence 345799999998887766677777777665 788999887 44555554443
No 215
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=34.07 E-value=15 Score=36.19 Aligned_cols=52 Identities=23% Similarity=0.248 Sum_probs=36.0
Q ss_pred cCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEec--CcchHhhcchh
Q psy16118 998 HPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISL--KEEFFSHADSL 1050 (1070)
Q Consensus 998 ~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~--~~~~~~~ad~l 1050 (1070)
...-++|+||+|..+|......+..++..+. +..|+|+.|= .+.+...+..+
T Consensus 175 ~~~~~lViDEah~l~~~~~~~~~~~i~~~~~-~~~q~~~~SAT~~~~~~~~~~~~ 228 (242)
T 3fe2_A 175 RRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-PDRQTLMWSATWPKEVRQLAEDF 228 (242)
T ss_dssp TTCCEEEETTHHHHHHTTCHHHHHHHHTTSC-SSCEEEEEESCCCHHHHHHHHHH
T ss_pred ccccEEEEeCHHHHhhhCcHHHHHHHHHhCC-ccceEEEEEeecCHHHHHHHHHH
Confidence 3445899999998888766666666666664 7889999764 44455555443
No 216
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=33.89 E-value=26 Score=33.71 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=32.5
Q ss_pred CCCeEEeecccccCCh-hhHHHHHHHHHHhcCCCceEEEEe--cCcchHhhcch
Q psy16118 999 PAPFFVLDEIDAALDN-TNIGKVASYIVTKTQDSLQTIVIS--LKEEFFSHADS 1049 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~-~n~~~~~~~l~~~~~~~~Q~i~iT--~~~~~~~~ad~ 1049 (1070)
..-++|+||+|..+|. .....+..++..+. ...|+|+.| +.+.+...+..
T Consensus 158 ~~~~lViDEah~~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~ 210 (220)
T 1t6n_A 158 HIKHFILDECDKMLEQLDMRRDVQEIFRMTP-HEKQVMMFSATLSKEIRPVCRK 210 (220)
T ss_dssp TCCEEEEESHHHHHSSHHHHHHHHHHHHTSC-SSSEEEEEESCCCTTTHHHHHT
T ss_pred cCCEEEEcCHHHHhcccCcHHHHHHHHHhCC-CcCeEEEEEeecCHHHHHHHHH
Confidence 3457999999999875 44445555555443 678999876 44455554444
No 217
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=33.16 E-value=4.6e+02 Score=27.70 Aligned_cols=20 Identities=0% Similarity=0.041 Sum_probs=0.0
Q ss_pred hhhccccCCCeEEeecccccCC
Q psy16118 992 IVSHRYHPAPFFVLDEIDAALD 1013 (1070)
Q Consensus 992 ~al~~~~~~Pf~ilDEvda~lD 1013 (1070)
|-.-.|+.+|.+ ||..+..+
T Consensus 439 fesKs~K~~~~~--de~g~~~~ 458 (491)
T 1m1j_A 439 FETKSLKTRETS--EQLGGVQH 458 (491)
T ss_dssp ----------------------
T ss_pred cccccccccccc--ccccchhc
Confidence 445555666644 66554444
No 218
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=33.05 E-value=23 Score=37.86 Aligned_cols=44 Identities=9% Similarity=0.145 Sum_probs=31.5
Q ss_pred CeEEeecccccCChhhHHHHHHHHHHhcC---CCceEEEEecCcchHh
Q psy16118 1001 PFFVLDEIDAALDNTNIGKVASYIVTKTQ---DSLQTIVISLKEEFFS 1045 (1070)
Q Consensus 1001 Pf~ilDEvda~lD~~n~~~~~~~l~~~~~---~~~Q~i~iT~~~~~~~ 1045 (1070)
.++||||+|.. |......+..++..+.. ...-||+|||.+.+..
T Consensus 127 ~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 127 MFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp EEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred EEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 36899999976 77777777777655431 2668899999876544
No 219
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=32.44 E-value=16 Score=38.35 Aligned_cols=11 Identities=45% Similarity=1.126 Sum_probs=10.7
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
+++|.||||||
T Consensus 43 ~~~llGpnGsG 53 (355)
T 1z47_A 43 MVGLLGPSGSG 53 (355)
T ss_dssp EEEEECSTTSS
T ss_pred EEEEECCCCCc
Confidence 89999999999
No 220
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=31.90 E-value=1.9e+02 Score=22.79 Aligned_cols=22 Identities=9% Similarity=-0.022 Sum_probs=8.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH
Q psy16118 342 QLDTINREQKGDQDKLDNELRQ 363 (1070)
Q Consensus 342 ~l~~~~~~~~~~~~~~~~~~~~ 363 (1070)
++......+.....+...++..
T Consensus 26 qLT~Aq~~l~~~eaQAaTCNqT 47 (99)
T 3ni0_A 26 QLTRTQDSLLQAETQANSCNLT 47 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 221
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=31.72 E-value=2.9e+02 Score=24.92 Aligned_cols=127 Identities=13% Similarity=0.147 Sum_probs=63.6
Q ss_pred HHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhc
Q psy16118 101 LFKLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEI----------REMDVEINKK 170 (1070)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 170 (1070)
..++..+...+.....+...+-+++.....++.-....++.....+.-...++... ..+ .....++..+
T Consensus 16 ~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~q-er~~~~~~~~f~~e~~~~E~~~l 94 (170)
T 3l4q_C 16 GAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQ-EKSSKEYLERFRREGNEKEMQRI 94 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSSTTGGGSSSSSCCCSSSTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHhhcCHHHHHHH
Confidence 33444444445445555555555555555444444444444443333333333111 000 0001123344
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 171 RPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYER 228 (1070)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 228 (1070)
......+...++.+......+...+.........++.++..++-++-.|....+.+..
T Consensus 95 ~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~ 152 (170)
T 3l4q_C 95 LLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLV 152 (170)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4555555666666666666666666666666666666667777777666666655543
No 222
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=31.64 E-value=2e+02 Score=22.98 Aligned_cols=27 Identities=11% Similarity=-0.090 Sum_probs=12.3
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy16118 764 DTKKNVARWERAVSDDEEELARAQGAE 790 (1070)
Q Consensus 764 ~~~~~~~~l~~~~~~l~~~~~~l~~~~ 790 (1070)
.++.+++.+-..+..++.+-..|..++
T Consensus 13 ~LNdRlAsyIdKVR~LEqqN~~Le~~i 39 (93)
T 3s4r_A 13 ELNDRFANLIDKVRFLEQQNKILLAEL 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444544444444444444444333
No 223
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=31.50 E-value=1.8e+02 Score=22.59 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16118 625 MGNLKAQKEKLSEELRE 641 (1070)
Q Consensus 625 l~~l~~~~~~l~~~~~~ 641 (1070)
+..++.....++..+.+
T Consensus 3 l~~l~~~~~sLE~~l~e 19 (84)
T 1gk4_A 3 VDALKGTNESLERQMRE 19 (84)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444333333
No 224
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=31.45 E-value=17 Score=38.25 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=13.3
Q ss_pred hHHHHHHHHhccCCCeEEeCCHH
Q psy16118 478 RYNVAITKVLGKYMEAIVVDSEK 500 (1070)
Q Consensus 478 ~~~~aie~~l~~~l~~~vv~~~~ 500 (1070)
.|..++..++...-+-++++-..
T Consensus 184 ~~~~~La~aL~~~PdvillDEp~ 206 (356)
T 3jvv_A 184 GFSEALRSALREDPDIILVGEMR 206 (356)
T ss_dssp CHHHHHHHHTTSCCSEEEESCCC
T ss_pred CHHHHHHHHhhhCcCEEecCCCC
Confidence 35666766666555555555443
No 225
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=30.84 E-value=22 Score=35.19 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=34.4
Q ss_pred cCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEe--cCcchHhhcch
Q psy16118 998 HPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVIS--LKEEFFSHADS 1049 (1070)
Q Consensus 998 ~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT--~~~~~~~~ad~ 1049 (1070)
...-++|+||+|..+|......+..++..+. ...|+|+.| ..+.+...+..
T Consensus 185 ~~~~~lViDEah~l~~~~~~~~l~~i~~~~~-~~~~~l~~SAT~~~~v~~~~~~ 237 (249)
T 3ber_A 185 RALKYLVMDEADRILNMDFETEVDKILKVIP-RDRKTFLFSATMTKKVQKLQRA 237 (249)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHSSC-SSSEEEEEESSCCHHHHHHHHH
T ss_pred cccCEEEEcChhhhhccChHHHHHHHHHhCC-CCCeEEEEeccCCHHHHHHHHH
Confidence 3445799999998877766666666666664 678998876 34445444443
No 226
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=30.64 E-value=27 Score=34.39 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=32.9
Q ss_pred CCCeEEeecccccCCh---hhHHHHHHHHHHhcCCCceEEEEe--cCcchHhhcc
Q psy16118 999 PAPFFVLDEIDAALDN---TNIGKVASYIVTKTQDSLQTIVIS--LKEEFFSHAD 1048 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~---~n~~~~~~~l~~~~~~~~Q~i~iT--~~~~~~~~ad 1048 (1070)
...++|+||+|..+|. .....+..++..+.....|+|+.| ..+.+...+.
T Consensus 175 ~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~ 229 (245)
T 3dkp_A 175 SVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCK 229 (245)
T ss_dssp TCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHH
T ss_pred cCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHH
Confidence 4457999999998883 455666666666543567998876 3344444443
No 227
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=30.42 E-value=47 Score=29.27 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=30.3
Q ss_pred CCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCc
Q psy16118 999 PAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKE 1041 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~ 1041 (1070)
....++||||| .|+......+..+|.... ....+|++|..+
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~-~~~~~I~~t~~~ 116 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEH-RPFRLIGIGDTS 116 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSSS-CSSCEEEEESSC
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhcC-CCEEEEEECCcC
Confidence 34578999999 567777777888885554 567888888764
No 228
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=29.63 E-value=25 Score=35.05 Aligned_cols=50 Identities=22% Similarity=0.160 Sum_probs=35.4
Q ss_pred cCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEe--cCcchHhhcc
Q psy16118 998 HPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVIS--LKEEFFSHAD 1048 (1070)
Q Consensus 998 ~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT--~~~~~~~~ad 1048 (1070)
...-++|+||+|..+|......+..++..+. ...|+|+.| +.+.+...+.
T Consensus 200 ~~l~~lViDEah~l~~~~~~~~l~~i~~~~~-~~~q~l~~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 200 KNLQCLVIDEADRILDVGFEEELKQIIKLLP-TRRQTMLFSATQTRKVEDLAR 251 (262)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHHSC-SSSEEEEECSSCCHHHHHHHH
T ss_pred ccCCEEEEcChHHHhhhhHHHHHHHHHHhCC-CCCeEEEEEecCCHHHHHHHH
Confidence 3456799999998888766666667776665 778999875 4555555544
No 229
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=29.40 E-value=3.8e+02 Score=25.55 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16118 625 MGNLKAQKEKLSEELRE 641 (1070)
Q Consensus 625 l~~l~~~~~~l~~~~~~ 641 (1070)
+..|+.+...+..++.-
T Consensus 151 l~~Lkk~~~~i~~~Lel 167 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEF 167 (242)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555444444
No 230
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=28.88 E-value=20 Score=38.70 Aligned_cols=19 Identities=11% Similarity=0.333 Sum_probs=10.4
Q ss_pred HHHHHHHHhccCCCeEEeC
Q psy16118 479 YNVAITKVLGKYMEAIVVD 497 (1070)
Q Consensus 479 ~~~aie~~l~~~l~~~vv~ 497 (1070)
|..++..++...-+.+++.
T Consensus 225 f~~~lr~~Lrq~pd~i~vg 243 (418)
T 1p9r_A 225 FARGLRAILRQDPDVVMVG 243 (418)
T ss_dssp HHHHHHHHGGGCCSEEEES
T ss_pred HHHHHHHHhccCCCeEEEc
Confidence 4556666666554555444
No 231
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=28.84 E-value=18 Score=33.56 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=9.7
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
..+|+||||+|
T Consensus 40 ~~~l~G~~G~G 50 (180)
T 3ec2_A 40 GLTFVGSPGVG 50 (180)
T ss_dssp EEEECCSSSSS
T ss_pred EEEEECCCCCC
Confidence 68889999999
No 232
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=28.38 E-value=23 Score=33.56 Aligned_cols=46 Identities=11% Similarity=0.270 Sum_probs=29.2
Q ss_pred CCCeEEeecccccCChh----hHHHHHHHHHHhcCCCceEEEEecCcchH
Q psy16118 999 PAPFFVLDEIDAALDNT----NIGKVASYIVTKTQDSLQTIVISLKEEFF 1044 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~----n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~ 1044 (1070)
.-+++|+||+...+... ..-++...+........|+|+||+.+..+
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l 136 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLL 136 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGB
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHH
Confidence 36799999999985322 22234343433322456999999987654
No 233
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=28.02 E-value=62 Score=33.80 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=30.4
Q ss_pred eEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc
Q psy16118 1002 FFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE 1042 (1070)
Q Consensus 1002 f~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~ 1042 (1070)
++++||+|. |+......+..+|.+.. ...-||++|..+.
T Consensus 136 vliiDE~~~-l~~~~~~~Ll~~le~~~-~~~~~il~~~~~~ 174 (353)
T 1sxj_D 136 IIILDEADS-MTADAQSALRRTMETYS-GVTRFCLICNYVT 174 (353)
T ss_dssp EEEETTGGG-SCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred EEEEECCCc-cCHHHHHHHHHHHHhcC-CCceEEEEeCchh
Confidence 789999984 56666677888888886 7778999987654
No 234
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=27.54 E-value=3e+02 Score=23.73 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 811 RLTKKQAVDAMDEEIGKARREVG 833 (1070)
Q Consensus 811 ~~~l~~~~~~~~~~~~~~~~~~~ 833 (1070)
+......++.++..+...+.++.
T Consensus 71 ~~sA~~~~d~lekKl~~aq~kL~ 93 (158)
T 3tul_A 71 TDTAKSVYDAATKKLTQAQNKLQ 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444443
No 235
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=27.48 E-value=22 Score=36.15 Aligned_cols=6 Identities=17% Similarity=0.168 Sum_probs=2.3
Q ss_pred eeeecc
Q psy16118 547 YDVLKY 552 (1070)
Q Consensus 547 ~~~v~~ 552 (1070)
++.+.+
T Consensus 70 id~~~~ 75 (316)
T 3foz_A 70 LDIRDP 75 (316)
T ss_dssp SSCBCT
T ss_pred eccCCc
Confidence 333443
No 236
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=27.47 E-value=2e+02 Score=21.76 Aligned_cols=47 Identities=11% Similarity=0.160 Sum_probs=23.3
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 332 ATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEM 378 (1070)
Q Consensus 332 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (1070)
+...+..++.++..++.++.....+.+.+-.-+..+..+|..++.-+
T Consensus 10 ~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLL 56 (74)
T 2xv5_A 10 SRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555554555555555544433
No 237
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=27.38 E-value=22 Score=36.20 Aligned_cols=7 Identities=29% Similarity=0.306 Sum_probs=2.8
Q ss_pred eeeeecc
Q psy16118 546 LYDVLKY 552 (1070)
Q Consensus 546 ~~~~v~~ 552 (1070)
+++.+.+
T Consensus 62 lid~~~~ 68 (322)
T 3exa_A 62 LIDIKDP 68 (322)
T ss_dssp SSSCBCT
T ss_pred EeccCCh
Confidence 3344443
No 238
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=26.40 E-value=1.9e+02 Score=21.03 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 117 ELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEI 167 (1070)
Q Consensus 117 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1070)
.+...+.++..+..-+..+..++.....-..+++.+....+..+..++..+
T Consensus 11 kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~ 61 (74)
T 2q6q_A 11 KLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKL 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 334444444444444444444444444434444444444444444444433
No 239
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=26.09 E-value=28 Score=34.75 Aligned_cols=7 Identities=29% Similarity=0.719 Sum_probs=2.8
Q ss_pred HHHHHhh
Q psy16118 505 CIQYLKD 511 (1070)
Q Consensus 505 ~~~~L~~ 511 (1070)
+.+.|..
T Consensus 167 l~~~L~~ 173 (263)
T 2pjz_A 167 ISRYIKE 173 (263)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344443
No 240
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=26.08 E-value=66 Score=32.66 Aligned_cols=54 Identities=9% Similarity=0.028 Sum_probs=33.4
Q ss_pred cccCCCeEEeecccccCChhhHHHHHHHHHHhcC--CCceEEEE--ecCc-chHhhcchhe
Q psy16118 996 RYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQ--DSLQTIVI--SLKE-EFFSHADSLV 1051 (1070)
Q Consensus 996 ~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~--~~~Q~i~i--T~~~-~~~~~ad~l~ 1051 (1070)
......++|+| .+++|..+...+..+..-+.. +..=++|| ||.. .+...++.+.
T Consensus 179 ~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~ 237 (296)
T 2px0_A 179 LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS 237 (296)
T ss_dssp HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS
T ss_pred HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh
Confidence 34566899999 899998877666655543320 12225666 7874 3445566553
No 241
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=25.82 E-value=23 Score=34.30 Aligned_cols=11 Identities=55% Similarity=0.797 Sum_probs=8.1
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
+++|+||||||
T Consensus 27 ~~~l~G~nGsG 37 (231)
T 4a74_A 27 ITEVFGEFGSG 37 (231)
T ss_dssp EEEEEESTTSS
T ss_pred EEEEECCCCCC
Confidence 67777777777
No 242
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=25.73 E-value=16 Score=39.29 Aligned_cols=9 Identities=33% Similarity=0.726 Sum_probs=3.6
Q ss_pred EEEcCCCCc
Q psy16118 30 AVIGPNGSG 38 (1070)
Q Consensus 30 lI~G~nGaG 38 (1070)
+|+||||||
T Consensus 46 aLvG~nGaG 54 (427)
T 2qag_B 46 LCVGETGLG 54 (427)
T ss_dssp EEECSTTSS
T ss_pred EEECCCCCC
Confidence 333444443
No 243
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=25.69 E-value=9.4 Score=36.99 Aligned_cols=39 Identities=5% Similarity=0.070 Sum_probs=19.8
Q ss_pred ChhhHHHHHHHHHHhcC-------CCceEEEEecC-cchHhhcchhe
Q psy16118 1013 DNTNIGKVASYIVTKTQ-------DSLQTIVISLK-EEFFSHADSLV 1051 (1070)
Q Consensus 1013 D~~n~~~~~~~l~~~~~-------~~~Q~i~iT~~-~~~~~~ad~l~ 1051 (1070)
|..+...+.+.|..... ...-+|+++|. ...+..++.++
T Consensus 159 d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 159 NTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 44444555555543310 23567788885 34555555543
No 244
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=25.69 E-value=57 Score=33.67 Aligned_cols=44 Identities=14% Similarity=0.056 Sum_probs=29.7
Q ss_pred cCCCeEEeecccccCCh-hhHHHHHHHHHHhcCCCceEEEEecCc
Q psy16118 998 HPAPFFVLDEIDAALDN-TNIGKVASYIVTKTQDSLQTIVISLKE 1041 (1070)
Q Consensus 998 ~~~Pf~ilDEvda~lD~-~n~~~~~~~l~~~~~~~~Q~i~iT~~~ 1041 (1070)
...++++||||+..-+. .....+..++..+...+.++|++|+++
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 34678999999986542 445566677765432557888888754
No 245
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=25.62 E-value=3.8e+02 Score=24.31 Aligned_cols=74 Identities=12% Similarity=0.107 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhhhhHHHHHHHHHHHHHHHhhccCCCHH-HHHHHHHHHH
Q psy16118 838 DIQAAQKSCVNLESKLEMKKSERHDILMNCKMNDIVLPMLRVQKYDRKLAKSIQEMTSRLQTIQAPNLR-AMEKLEHAKE 916 (1070)
Q Consensus 838 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~n~~-a~~e~~~~~~ 916 (1070)
.+..+...+......+..+...+..........+..+. .+..++..+..-.+++|+ .+. .+.-+..+..
T Consensus 88 ~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~---------~ie~RL~~l~~L~RKyg~-~~eell~~~~~~~~ 157 (175)
T 4abx_A 88 TVMQLQNELRAALESVQAIAGELRDVAEGSAADPEALD---------RVEARLSALSKLKNKYGP-TLEDVVEFGAQAAE 157 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHH---------HHHHHHHHHHHHHHHHCS-SHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH---------HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 34444555555555555555555554444333332333 788899999988899984 443 3333444555
Q ss_pred HHHHH
Q psy16118 917 NLMKT 921 (1070)
Q Consensus 917 ~~~~l 921 (1070)
++..+
T Consensus 158 eL~~l 162 (175)
T 4abx_A 158 ELAGL 162 (175)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 246
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=25.45 E-value=44 Score=32.14 Aligned_cols=38 Identities=8% Similarity=0.091 Sum_probs=29.8
Q ss_pred CCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhh
Q psy16118 1000 APFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSH 1046 (1070)
Q Consensus 1000 ~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ 1046 (1070)
-++|||| ||...+..+.+++. ...=+||+||....+..
T Consensus 108 G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 108 GVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSKIELDR 145 (219)
T ss_dssp TCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSHHHHHH
T ss_pred CCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCHHHHHH
Confidence 3789999 99999999887764 35578889998776544
No 247
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=24.69 E-value=70 Score=32.60 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=29.0
Q ss_pred CCCeEEeecccccC--------ChhhHHHHHHHHHHhcCCCceEEEEecC
Q psy16118 999 PAPFFVLDEIDAAL--------DNTNIGKVASYIVTKTQDSLQTIVISLK 1040 (1070)
Q Consensus 999 ~~Pf~ilDEvda~l--------D~~n~~~~~~~l~~~~~~~~Q~i~iT~~ 1040 (1070)
+.+++++||+|.-. +..-...+..++.... ....||++|..
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~-~~~~~i~~~~~ 178 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR-DDLVVILAGYA 178 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT-TTCEEEEEECH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC-CCEEEEEeCCh
Confidence 44689999999654 4445566777776654 67788888854
No 248
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=24.64 E-value=5.2e+02 Score=25.55 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q psy16118 886 LAKSIQEMTSRL 897 (1070)
Q Consensus 886 l~~~l~~l~~~l 897 (1070)
+...+..|...+
T Consensus 152 l~~~~e~L~~ql 163 (273)
T 3s84_A 152 LNHQLEGLTFQM 163 (273)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 249
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=24.58 E-value=3e+02 Score=22.77 Aligned_cols=10 Identities=40% Similarity=0.444 Sum_probs=3.6
Q ss_pred hhHHHHHHHH
Q psy16118 415 SSKNRVQELQ 424 (1070)
Q Consensus 415 ~~~~~~~~l~ 424 (1070)
..+..+..+.
T Consensus 56 ~sE~~L~~Lq 65 (112)
T 1x79_B 56 ASEILLEELQ 65 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 250
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=24.44 E-value=27 Score=34.40 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=13.6
Q ss_pred CCCeEEee----cccccCChhhHHHHHHHHHH
Q psy16118 999 PAPFFVLD----EIDAALDNTNIGKVASYIVT 1026 (1070)
Q Consensus 999 ~~Pf~ilD----Evda~lD~~n~~~~~~~l~~ 1026 (1070)
|.|+++|| |..+++|..+...|.+.|..
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~ 195 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQ 195 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHH
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHH
Confidence 44444555 55555555544444444443
No 251
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=24.43 E-value=38 Score=35.77 Aligned_cols=53 Identities=8% Similarity=-0.051 Sum_probs=34.5
Q ss_pred CCCeEEeeccc---------ccCChhhHHHHHHHHHHhcC-CCceEEEEecCcchHhhcchhe
Q psy16118 999 PAPFFVLDEID---------AALDNTNIGKVASYIVTKTQ-DSLQTIVISLKEEFFSHADSLV 1051 (1070)
Q Consensus 999 ~~Pf~ilDEvd---------a~lD~~n~~~~~~~l~~~~~-~~~Q~i~iT~~~~~~~~ad~l~ 1051 (1070)
...+++|||.| .++|...+..++.+|.++.. .+..+|++||-......++.+.
T Consensus 277 ~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~ 339 (365)
T 1lw7_A 277 PFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKA 339 (365)
T ss_dssp CCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Confidence 34578889822 45788899999999977641 2678999998655555566543
No 252
>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}
Probab=24.17 E-value=79 Score=28.51 Aligned_cols=40 Identities=10% Similarity=0.183 Sum_probs=32.7
Q ss_pred CCcceecccccccchhhHHHHHHHHhccCCCeEEeCCHHHHHHH
Q psy16118 462 SGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLC 505 (1070)
Q Consensus 462 ~~~~g~~~~~~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~~ 505 (1070)
++..+.+.+++. +++.|..++..++| +.+||++.+.|..+
T Consensus 95 ~~~~~~a~dlv~-~d~~~~~a~~~llg---~tlv~~dl~~A~~~ 134 (161)
T 3l51_A 95 PDNVHVALSLVD-YKPELQKGMEFVFG---TTFVCNNMDNAKKV 134 (161)
T ss_dssp TTSEEEGGGGEE-CCGGGHHHHHHHHT---TCEEESSHHHHHHH
T ss_pred CcchhHHHHHhc-CCHHHHHHHHHHcC---CEEEECCHHHHHHH
Confidence 445567778886 68899999999999 78999999998753
No 253
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=23.82 E-value=28 Score=36.53 Aligned_cols=11 Identities=45% Similarity=0.881 Sum_probs=10.7
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
++.|.||||||
T Consensus 56 i~~IiGpnGaG 66 (366)
T 3tui_C 56 IYGVIGASGAG 66 (366)
T ss_dssp EEEEECCTTSS
T ss_pred EEEEEcCCCch
Confidence 89999999999
No 254
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=23.76 E-value=48 Score=39.18 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=34.1
Q ss_pred ccCCCeEEeecccc-cCChhhHHHHHHHHHHhcCCCceEEEE--ecCcc
Q psy16118 997 YHPAPFFVLDEIDA-ALDNTNIGKVASYIVTKTQDSLQTIVI--SLKEE 1042 (1070)
Q Consensus 997 ~~~~Pf~ilDEvda-~lD~~n~~~~~~~l~~~~~~~~Q~i~i--T~~~~ 1042 (1070)
.....++||||++. .+|......+...|.... +..|+|++ ||...
T Consensus 206 l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~ 253 (773)
T 2xau_A 206 LSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE 253 (773)
T ss_dssp CTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH
T ss_pred ccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHH
Confidence 44556899999997 888777767777776665 78899998 67543
No 255
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=23.53 E-value=33 Score=36.54 Aligned_cols=45 Identities=24% Similarity=0.257 Sum_probs=27.0
Q ss_pred eEEeecccccCChh---hHHHHHHHHHHhcCCCceEEEEecCcchHhh
Q psy16118 1002 FFVLDEIDAALDNT---NIGKVASYIVTKTQDSLQTIVISLKEEFFSH 1046 (1070)
Q Consensus 1002 f~ilDEvda~lD~~---n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ 1046 (1070)
++||||++...+.. -...+...+..+.....-||++||.+.++..
T Consensus 131 vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 131 VIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp EEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred EEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 58899999987543 3333333333222135678999998876543
No 256
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=23.50 E-value=93 Score=27.17 Aligned_cols=41 Identities=7% Similarity=0.023 Sum_probs=28.2
Q ss_pred CCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCc
Q psy16118 1000 APFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKE 1041 (1070)
Q Consensus 1000 ~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~ 1041 (1070)
...++|||||. |+..-...+..+|........-||++|..+
T Consensus 76 ~~~l~lDei~~-l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 76 GGVLYVGDIAQ-YSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TSEEEEEECTT-CCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCeEEEeChHH-CCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 45788999994 566666677787776531346688888654
No 257
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=23.32 E-value=2.7e+02 Score=21.88 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy16118 380 EAQKRIDKLE 389 (1070)
Q Consensus 380 ~~~~~~~~l~ 389 (1070)
.....+..|.
T Consensus 43 TCNqTV~tL~ 52 (99)
T 3ni0_A 43 SCNLTVVTLQ 52 (99)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 258
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=23.29 E-value=32 Score=33.86 Aligned_cols=8 Identities=13% Similarity=0.501 Sum_probs=4.5
Q ss_pred CCeEEeec
Q psy16118 1000 APFFVLDE 1007 (1070)
Q Consensus 1000 ~Pf~ilDE 1007 (1070)
-||.-+|.
T Consensus 176 EP~~~ld~ 183 (246)
T 2bbw_A 176 EPLVQQED 183 (246)
T ss_dssp CBCBCCGG
T ss_pred cccccCCC
Confidence 46665554
No 259
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=23.18 E-value=29 Score=36.83 Aligned_cols=11 Identities=55% Similarity=1.002 Sum_probs=0.0
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
+++|+||||||
T Consensus 138 ~i~ivG~~GsG 148 (372)
T 2ewv_A 138 LILVTGPTGSG 148 (372)
T ss_dssp EEEEECSSSSS
T ss_pred EEEEECCCCCC
No 260
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=22.52 E-value=28 Score=37.03 Aligned_cols=11 Identities=36% Similarity=0.712 Sum_probs=10.7
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
+++|.||||||
T Consensus 49 ~~~llGpsGsG 59 (390)
T 3gd7_A 49 RVGLLGRTGSG 59 (390)
T ss_dssp EEEEEESTTSS
T ss_pred EEEEECCCCCh
Confidence 89999999999
No 261
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.52 E-value=67 Score=25.04 Aligned_cols=36 Identities=19% Similarity=0.087 Sum_probs=27.1
Q ss_pred CccccceecccccccCcccc-cC-CCC-eEEEEcCCCCc
Q psy16118 3 PILQYIEVDNFKSYKGKFSI-GP-LKK-FTAVIGPNGSG 38 (1070)
Q Consensus 3 m~~~~L~l~~F~~y~~~~~i-~d-f~~-l~lI~G~nGaG 38 (1070)
|.|=++-+..+|+|+|+-.+ .+ .+. ..+|.||...|
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~~vlV~g~~~~~ 42 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGAGLNK 42 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEECSSSCEEEECCTTTT
T ss_pred cccCEEEEEeecCCCCCEEEEEEEcCCCEEEEECCccCc
Confidence 66778899999999998743 13 333 89999997666
No 262
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=22.18 E-value=74 Score=33.55 Aligned_cols=40 Identities=8% Similarity=0.294 Sum_probs=31.5
Q ss_pred CeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc
Q psy16118 1001 PFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE 1042 (1070)
Q Consensus 1001 Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~ 1042 (1070)
.++|+||+|. |+......+.+++.... ...-||++|+++.
T Consensus 121 ~vliiDe~~~-l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 121 KVYLIDEVHM-LSRHSFNALLKTLEEPP-EHVKFLLATTDPQ 160 (373)
T ss_dssp EEEEEECGGG-SCHHHHHHHHHHHHSCC-SSEEEEEEESCGG
T ss_pred EEEEEECcch-hcHHHHHHHHHHHhcCC-CceEEEEEeCChH
Confidence 3789999995 67777778888887765 7788999998654
No 263
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=22.11 E-value=52 Score=35.33 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=34.7
Q ss_pred CCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEec--CcchHhhcc
Q psy16118 999 PAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISL--KEEFFSHAD 1048 (1070)
Q Consensus 999 ~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~--~~~~~~~ad 1048 (1070)
...++|+||+|..+|......+..++..+. ...|+|+.|= .+.+...+.
T Consensus 179 ~~~~vViDEah~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~ 229 (410)
T 2j0s_A 179 AIKMLVLDEADEMLNKGFKEQIYDVYRYLP-PATQVVLISATLPHEILEMTN 229 (410)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHTTSC-TTCEEEEEESCCCHHHHTTGG
T ss_pred heeEEEEccHHHHHhhhhHHHHHHHHHhCc-cCceEEEEEcCCCHHHHHHHH
Confidence 345799999999888877777777776554 7789999874 333444443
No 264
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=22.11 E-value=58 Score=31.90 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=24.6
Q ss_pred ccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecC
Q psy16118 997 YHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLK 1040 (1070)
Q Consensus 997 ~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~ 1040 (1070)
..+.|++|||++|++.|.. +..++ +.=++|+||.
T Consensus 131 ~~~~~~lilDg~~~~~~~~--------l~~~~--~~~i~v~th~ 164 (245)
T 2jeo_A 131 VYPADVVLFEGILVFYSQE--------IRDMF--HLRLFVDTDS 164 (245)
T ss_dssp ECCCSEEEEECTTTTTSHH--------HHTTC--SEEEEEECCH
T ss_pred ecCCCEEEEeCccccccHH--------HHHhc--CeEEEEECCH
Confidence 3567899999999988753 33343 4568888886
No 265
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=21.90 E-value=67 Score=33.07 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=31.4
Q ss_pred CCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc
Q psy16118 1000 APFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE 1042 (1070)
Q Consensus 1000 ~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~ 1042 (1070)
..++|+||+|..-.......+..++.... ....||++|..+.
T Consensus 106 ~~vliiDEi~~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~ 147 (324)
T 3u61_B 106 QKVIVIDEFDRSGLAESQRHLRSFMEAYS-SNCSIIITANNID 147 (324)
T ss_dssp EEEEEEESCCCGGGHHHHHHHHHHHHHHG-GGCEEEEEESSGG
T ss_pred CeEEEEECCcccCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcc
Confidence 34789999997642445667778888876 7789999987654
No 266
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=21.77 E-value=64 Score=33.48 Aligned_cols=41 Identities=7% Similarity=0.049 Sum_probs=29.5
Q ss_pred CCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcc
Q psy16118 1000 APFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEE 1042 (1070)
Q Consensus 1000 ~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~ 1042 (1070)
..++|+||+|. |...-...+.++|.+-. +++=||++|+++.
T Consensus 109 ~kvviIdead~-l~~~a~naLLk~lEep~-~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 109 AKVVWVTDAAL-LTDAAANALLKTLEEPP-AETWFFLATREPE 149 (334)
T ss_dssp CEEEEESCGGG-BCHHHHHHHHHHHTSCC-TTEEEEEEESCGG
T ss_pred cEEEEECchhh-cCHHHHHHHHHHhcCCC-CCeEEEEEeCChH
Confidence 35789999995 45444556677776654 6788999998764
No 267
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=21.71 E-value=7.7e+02 Score=26.48 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 825 IGKARREVGSIAKDIQAAQKSCVNLESKLEMKKSERHD 862 (1070)
Q Consensus 825 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~ 862 (1070)
+......+......+......+...+..+..+...+..
T Consensus 68 l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae 105 (497)
T 3iox_A 68 LAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAE 105 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444555555444444444443
No 268
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=21.60 E-value=30 Score=37.59 Aligned_cols=58 Identities=12% Similarity=0.073 Sum_probs=43.5
Q ss_pred hhh--h-hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCC-----Cc-----eEEEEecCcchHhhcchheeec
Q psy16118 988 VST--T-IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQD-----SL-----QTIVISLKEEFFSHADSLVGIC 1054 (1070)
Q Consensus 988 LSG--t-~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~-----~~-----Q~i~iT~~~~~~~~ad~l~gVt 1054 (1070)
+|| - +||. ....|+ .++||+.+...+.++|..+. . ++ =++++||+.. ...||..+.++
T Consensus 259 lS~g~qrvslA-l~~p~~------t~glD~~~~~~l~~ll~r~~-~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~ 329 (438)
T 2dpy_A 259 YAMAQREIALA-IGEPPA------TKGYPPSVFAKLPALVERAG-NGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAIL 329 (438)
T ss_dssp HHHHHHHHHHH-TTCCCC------SSSCCTTHHHHHHHHHTTCS-CCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHS
T ss_pred HHHHHHHHHHH-hCCCcc------cccCCHHHHHHHHHHHHHHH-hccCCCCcccceeEEEEeCCCcc-chhhceEEEEe
Confidence 666 1 3333 455566 99999999999999999886 4 33 5888899987 77888876554
No 269
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.56 E-value=78 Score=33.60 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=31.0
Q ss_pred hhhccccCCC-eEEeecccccCCh----------hhHHHHHHHHHHhcC--CC--ceEEEEecCcchHh
Q psy16118 992 IVSHRYHPAP-FFVLDEIDAALDN----------TNIGKVASYIVTKTQ--DS--LQTIVISLKEEFFS 1045 (1070)
Q Consensus 992 ~al~~~~~~P-f~ilDEvda~lD~----------~n~~~~~~~l~~~~~--~~--~Q~i~iT~~~~~~~ 1045 (1070)
|..... .+| +++|||+|+.+-. .....+..+|..+-+ .. .=||..|.++..+.
T Consensus 234 F~~Ar~-~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LD 301 (405)
T 4b4t_J 234 FVMARE-HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILD 301 (405)
T ss_dssp HHHHHH-TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSC
T ss_pred HHHHHH-hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCC
Confidence 655543 455 5678999987632 223456667766632 22 23566777776553
No 270
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=21.48 E-value=62 Score=33.04 Aligned_cols=39 Identities=0% Similarity=0.061 Sum_probs=30.5
Q ss_pred CeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCc
Q psy16118 1001 PFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKE 1041 (1070)
Q Consensus 1001 Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~ 1041 (1070)
.++|+||+|.. ...-...+.++|.+-. +.+=||++|+++
T Consensus 84 kvviIdead~l-t~~a~naLLk~LEep~-~~t~fIl~t~~~ 122 (305)
T 2gno_A 84 KYVIVHDCERM-TQQAANAFLKALEEPP-EYAVIVLNTRRW 122 (305)
T ss_dssp EEEEETTGGGB-CHHHHHHTHHHHHSCC-TTEEEEEEESCG
T ss_pred eEEEeccHHHh-CHHHHHHHHHHHhCCC-CCeEEEEEECCh
Confidence 47899999965 4444566888888776 789999999875
No 271
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.88 E-value=93 Score=33.53 Aligned_cols=54 Identities=11% Similarity=0.180 Sum_probs=31.4
Q ss_pred hhhccccCCC-eEEeecccccCCh----------hhHHHHHHHHHHhcC--C--CceEEEEecCcchHhh
Q psy16118 992 IVSHRYHPAP-FFVLDEIDAALDN----------TNIGKVASYIVTKTQ--D--SLQTIVISLKEEFFSH 1046 (1070)
Q Consensus 992 ~al~~~~~~P-f~ilDEvda~lD~----------~n~~~~~~~l~~~~~--~--~~Q~i~iT~~~~~~~~ 1046 (1070)
|..... .+| ++++||+|+.+.. .....+..+|..+-+ . ..=||..|.++..+..
T Consensus 267 F~~A~~-~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDp 335 (437)
T 4b4t_L 267 FAYAKE-HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDP 335 (437)
T ss_dssp HHHHHH-SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCT
T ss_pred HHHHHh-cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCH
Confidence 555543 345 5678999987622 233455667776642 1 1236667877766543
No 272
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=20.87 E-value=25 Score=36.68 Aligned_cols=11 Identities=36% Similarity=1.147 Sum_probs=10.3
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
+++|.||||||
T Consensus 28 ~~~llGpnGsG 38 (348)
T 3d31_A 28 YFVILGPTGAG 38 (348)
T ss_dssp EEEEECCCTHH
T ss_pred EEEEECCCCcc
Confidence 89999999999
No 273
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=20.46 E-value=5.3e+02 Score=28.22 Aligned_cols=11 Identities=0% Similarity=0.202 Sum_probs=4.9
Q ss_pred HHHH-HHHHHHh
Q psy16118 1017 IGKV-ASYIVTK 1027 (1070)
Q Consensus 1017 ~~~~-~~~l~~~ 1027 (1070)
+.|+ +-+|..+
T Consensus 440 v~R~l~alLEn~ 451 (501)
T 1wle_A 440 VPRLLIALLESY 451 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 4554 4444443
No 274
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=20.14 E-value=7.3e+02 Score=25.62 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=13.4
Q ss_pred cchheeeccCCccceeeec
Q psy16118 1047 ADSLVGICPGSVTISSICF 1065 (1070)
Q Consensus 1047 ad~l~gVt~~~~gvs~v~~ 1065 (1070)
++.-||.-+.|.||.+|+.
T Consensus 185 G~~ayg~Lk~EsGvHRvqR 203 (365)
T 1gqe_A 185 GDYAYGWLRTETGVHRLVR 203 (365)
T ss_dssp STTHHHHHGGGCEEEEEEE
T ss_pred CcCHHHHhhhccceEEEEE
Confidence 3456777778888887763
No 275
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=20.02 E-value=37 Score=34.85 Aligned_cols=11 Identities=27% Similarity=0.438 Sum_probs=0.0
Q ss_pred eEEEEcCCCCc
Q psy16118 28 FTAVIGPNGSG 38 (1070)
Q Consensus 28 l~lI~G~nGaG 38 (1070)
+.+|.||||||
T Consensus 92 ivgI~G~sGsG 102 (312)
T 3aez_A 92 IIGVAGSVAVG 102 (312)
T ss_dssp EEEEECCTTSC
T ss_pred EEEEECCCCch
Done!