RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16118
(1070 letters)
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell
cycle, cell division; 2.70A {Mus musculus}
Length = 233
Score = 203 bits (519), Expect = 7e-60
Identities = 115/235 (48%), Positives = 168/235 (71%), Gaps = 6/235 (2%)
Query: 412 DVGSSKNRVQELQKELEQVIEELGDAKTDKHEDTRRKKKQELVENFKKAY-SGVYDRMIN 470
+V +K R+ E+ KEL QV+E+LGDA+ D+ E +R+++K E++E+ K+ Y VY R+I+
Sbjct: 2 EVEMAKRRIDEINKELNQVMEQLGDARIDRQESSRQQRKAEIMESIKRLYPGSVYGRLID 61
Query: 471 MCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTKPL 530
+C P K+Y +A+TKVLGK M+AI+VDSEKT R CIQY+K+ + +PETFLP+DYL+ KP
Sbjct: 62 LCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPT 121
Query: 531 KERLRNIRDPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRY 590
E+LR K KL+ DV++Y+P IK+ + +A NALVC+ EDA ++A+ R+
Sbjct: 122 DEKLRE---LKGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFG--GHQRH 176
Query: 591 DAVALDGTFYQKSGIMSGGSLDLARKAKRWDDKEMGNLKAQKEKLSEELREAMKK 645
VALDGT +QKSG++SGG+ DL KA+RWD+K + LK +K +L+EEL E
Sbjct: 177 KTVALDGTLFQKSGVISGGASDLKAKARRWDEKAVDKLKEKKGRLTEELLEHHHH 231
>3l51_B Structural maintenance of chromosomes protein 4; structural
maintenance of chromosomes (SMC), hinge domain, C cycle,
cell division, cytoplasm; 1.51A {Mus musculus}
Length = 166
Score = 147 bits (374), Expect = 4e-41
Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 6/155 (3%)
Query: 458 KKAYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPE 517
G+Y R+ ++ + ++Y++AI+ ++ IVVDS TA+ C+ +LK H +
Sbjct: 13 SGRIPGIYGRLGDLG-AIDEKYDIAISSCCHA-LDYIVVDSIDTAQECVNFLKKHNIGIA 70
Query: 518 TFLPIDYLQTKPLKERLRNIRDPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDA 577
TF+ +D + ++ I+ P+N L+D++K + E+I++ FA + LV + A
Sbjct: 71 TFIGLDKMTVWAK--KMSKIQTPENTPRLFDLVKVKNEEIRQAFYFALRDTLVANNLDQA 128
Query: 578 MKVAYDIEPQHRYDAVALDGTFYQKSGIMSGGSLD 612
+VAY R+ V L G ++SG MSGG
Sbjct: 129 TRVAYQR--DRRWRVVTLQGQIIEQSGTMSGGLEH 161
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain,
anti parallel coiled coil, SMC proteins; 3.0A
{Thermotoga maritima} SCOP: d.215.1.1
Length = 213
Score = 138 bits (350), Expect = 3e-37
Identities = 44/218 (20%), Positives = 98/218 (44%), Gaps = 6/218 (2%)
Query: 422 ELQKELEQVIEELGDAKTDKHEDTRRKKKQELVENFKKAYSGVYDRMINMCHPVHKRYNV 481
+K L ++ E + D E + V K+ + G+ D + N+ V ++Y++
Sbjct: 2 AKEKRLREIQFEKEMIERDMREYRGFSRAVRAVFEEKERFPGLVDVVSNLIE-VDEKYSL 60
Query: 482 AITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTKPLKERLRNIRDPK 541
A++ +LG + IVV + TA+ +++LK ++ T LP+D + + +
Sbjct: 61 AVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLE-NERG 119
Query: 542 NVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALDGTFYQ 601
V D++K+ + ++ + F N++V ET +DA+++ + LDG
Sbjct: 120 FVGYAVDLVKFPSD-LEVLGGFLFGNSVVVETLDDAIRMKKKY--RLNTRIATLDGELIS 176
Query: 602 KSGIMSGGSLDLARKAKRWDDKEMGNLKAQKEKLSEEL 639
G ++GG + ++ +L+ + E+ ++
Sbjct: 177 GRGAITGGREE-RSSNVFERRIKLKHLEQEMEETERQI 213
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge
domai dimerization, DNA binding, cell cycle; 1.70A
{Pyrococcus furiosus}
Length = 189
Score = 132 bits (334), Expect = 2e-35
Identities = 51/214 (23%), Positives = 88/214 (41%), Gaps = 28/214 (13%)
Query: 426 ELEQVIEELGDAKTDKHEDTRRKKKQELVENFKKA-YSGVYDRMINMCHPVHKRYNVAIT 484
ELE EL E R + E K++ G+Y + + + Y +AI
Sbjct: 2 ELESSEREL-----IAAEAQREVRGNRAAEELKRSGIGGIYGTLAELIKVKDEAYALAIE 56
Query: 485 KVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTKPLKERLRNIRDPKNVK 544
LG + +VV+ E A I+YLK+H+L TFLP++ ++ K + D
Sbjct: 57 VALGNRADNVVVEDELVAEKAIKYLKEHKLGRLTFLPLNKIKPKHV--------DSSVGL 108
Query: 545 LLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALDGTFYQKSG 604
DV++Y + I+ V FA + ++ + E+A + V ++G Y++SG
Sbjct: 109 PAVDVIEYDQK-IENAVKFALGDTVIVNSMEEARPHIG------KVRMVTIEGELYERSG 161
Query: 605 IMSGGSLDLARKAKRWDDKEMGNLKAQKEKLSEE 638
++GG + D K + E
Sbjct: 162 AITGGHFR--ARGLAVDTT-----KLRLEHHHHH 188
>3l51_A Structural maintenance of chromosomes protein 2; structural
maintenance of chromosomes (SMC), hinge domain, C cycle,
cell division, cytoplasm; 1.51A {Mus musculus}
Length = 161
Score = 126 bits (320), Expect = 6e-34
Identities = 35/163 (21%), Positives = 77/163 (47%), Gaps = 11/163 (6%)
Query: 451 QELVENFKKAYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLK 510
++ +N+ + + V + ++ + A+ V G+ + +VVD+E TA+ ++ +
Sbjct: 6 KDPEKNWNR--NSVKGLVASLINVKDNSTATALEVVAGERLYNVVVDTEVTAKKLLEKGE 63
Query: 511 DHQLDPETFLPIDYLQTKPLKER----LRNIRDPKNVKLLYDVLKYQPEDIKRVVLFATN 566
+ T +P++ + + + +N+ P NV + ++ Y+PE +++ + F
Sbjct: 64 LKR--RYTIIPLNKISARCIAPETLRVAQNLVGPDNVHVALSLVDYKPE-LQKGMEFVFG 120
Query: 567 NALVCETPEDAMKVAYDIEPQHRYDAVALDGTFYQKSGIMSGG 609
VC ++A KVA+D + V L G + G +SGG
Sbjct: 121 TTFVCNNMDNAKKVAFD--KRIMTRTVTLGGDVFDPHGTLSGG 161
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain,
anti parallel coiled coil, SMC proteins; 2.0A
{Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Length = 186
Score = 123 bits (312), Expect = 2e-32
Identities = 42/191 (21%), Positives = 86/191 (45%), Gaps = 10/191 (5%)
Query: 433 ELGDAKTDKHEDTRRKKKQELVENFKKAYSGVYDRMINMCHPVHKRYNVAITKVLGKYME 492
E + D E + V K+ + G+ D + N+ V ++Y++A++ +LG +
Sbjct: 1 EKEMIERDMREYRGFSRAVRAVFEEKERFPGLVDVVSNLIE-VDEKYSLAVSVLLGGTAQ 59
Query: 493 AIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTKPLKERLRNIRDPKNVKLLYDVLKY 552
IVV + TA+ +++LK ++ T LP+D + + + V D++K+
Sbjct: 60 NIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLE-NERGFVGYAVDLVKF 118
Query: 553 QPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALDGTFYQKSGIMSGGSLD 612
+ ++ + F N++V ET +DA+++ + LDG G ++GG +
Sbjct: 119 PSD-LEVLGGFLFGNSVVVETLDDAIRMKKKY--RLNTRIATLDGELISGRGAITGGREE 175
Query: 613 -----LARKAK 618
R+ K
Sbjct: 176 RSSNVFERRIK 186
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle; HET:
ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Length = 430
Score = 126 bits (319), Expect = 3e-31
Identities = 62/262 (23%), Positives = 100/262 (38%), Gaps = 40/262 (15%)
Query: 831 EVGSIAKDIQAAQKSCVNLESKLEMKKSERHDILMNCKMNDIVLPMLRVQKYDRKLAKSI 890
+V IA S K E ++ K+ + K R++ +
Sbjct: 153 DVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKE--KIEKLSKSATESIKNRRRIHGEL 210
Query: 891 QEMTSRLQTIQAPNLRAMEKLEHAKENLMKTNEEFENARKRAKKAKANFDRIKKERYDKF 950
+ S + + + A+ N E E + KK F +IKK+R + F
Sbjct: 211 KTYKSPGLEV-LFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELF 269
Query: 951 TRCFEHVSNEIDGA----GSESVLPRPFLG------PENPEEPLTYRV------------ 988
+ F++VS+ +D G E+ +EP +
Sbjct: 270 EKTFDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFK 329
Query: 989 ----------STTIVS-----HRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQ 1033
+ ++ + Y P+PFFVLDE+DAALD TN+ ++A+YI LQ
Sbjct: 330 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQ 389
Query: 1034 TIVISLKEEFFSHADSLVGICP 1055
IVISLK F +D+LVG+
Sbjct: 390 FIVISLKNTMFEKSDALVGVYR 411
Score = 70.1 bits (172), Expect = 1e-12
Identities = 43/245 (17%), Positives = 92/245 (37%), Gaps = 33/245 (13%)
Query: 5 LQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSGALKDDYERLKAEMIQA------EEE 57
L +E+ NFKSY+G +G + FT++IGPNGSG K+ M+ A
Sbjct: 4 LVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSG---------KSNMMDAISFVLGVRS 54
Query: 58 TNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDIK----- 112
++ K ++ D+ + + V+ + + ++
Sbjct: 55 NHLRSNILKDLIYRGVLNDENSDDYDNEGAASSNPQSAYVKAFY-QKGNKLVELMRIISR 113
Query: 113 --ELEDELDKKKGEVEKIERRKEKAENILREKKK--EQGALNRELAKVDQEIREMDVEIN 168
+ ++D K + E +++ K QG + + A+ E+ M E++
Sbjct: 114 NGDTSYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVS 173
Query: 169 KKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVR---KRKAE 225
I+ K+ +++K+ KS E + + ++ ++ +V R +
Sbjct: 174 G----SIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSR 229
Query: 226 YERQS 230
Y+
Sbjct: 230 YDEAE 234
Score = 36.2 bits (84), Expect = 0.062
Identities = 22/188 (11%), Positives = 59/188 (31%), Gaps = 24/188 (12%)
Query: 40 LKDDYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIR----EEIVAK 95
KD L+ E I + + + + +A + ++ + E I+ E + +
Sbjct: 128 YKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKE 187
Query: 96 EVEHQLFKLYHNETDIKELEDELDKKKGE----------VEKIERRKEKAENILREKKKE 145
++E + + + + EL K + + + + E
Sbjct: 188 KIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGR----FEVINNE 243
Query: 146 QGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAH 205
L E K+ + ++ + + ++ ++ L + + L + +N
Sbjct: 244 TEQLKAEEKKILNQFLKIKKKRKE------LFEKTFDYVSDHLDAIYRELTKNPNSNVEL 297
Query: 206 NKDIADLE 213
A L
Sbjct: 298 AGGNASLT 305
Score = 31.2 bits (71), Expect = 1.9
Identities = 23/144 (15%), Positives = 52/144 (36%), Gaps = 5/144 (3%)
Query: 234 RDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLET 293
+D + ++ I K + + + V I + + E + + K+ +L+
Sbjct: 129 KDYS-IFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKE 187
Query: 294 QLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATKRAGKILQQLDTINREQKGD 353
++ + K E + R I+ E L+ G + + +
Sbjct: 188 KIEKLSKSATESIKNR---RRIHGELKTYKSP-GLEVLFQGPRGSRYDEAEGRFEVINNE 243
Query: 354 QDKLDNELRQQVQTQNEIKKKRHE 377
++L E ++ + +IKKKR E
Sbjct: 244 TEQLKAEEKKILNQFLKIKKKRKE 267
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell
cycle, cell division; 2.70A {Mus musculus}
Length = 213
Score = 102 bits (256), Expect = 9e-25
Identities = 39/223 (17%), Positives = 92/223 (41%), Gaps = 20/223 (8%)
Query: 424 QKELEQVIEELGDAKTDKHEDTRRKKKQELVENFKKAY------SGVYDRMINMCHPVHK 477
+++LE+ + L A T K +++E+F++ +G + ++N
Sbjct: 4 REDLEKKQQLL-RAATGKAILNGIDSINKVLEHFRRKGINQHVQNGYHGIVMNNFE-CEP 61
Query: 478 RYNVAITKVLGKYMEAIVVDSEKTA-RLCIQYLKDHQLDPETFLPIDYLQTKPLKERLRN 536
+ + G + +VDS++ + ++ +++ K + TFLP++ L +
Sbjct: 62 AFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLNKLDVRDT-----A 116
Query: 537 IRDPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALD 596
+ + + L+Y P + L+C + E + ++A D + L+
Sbjct: 117 YPETNDAIPMISKLRYNPR-FDKAFKHVFGKTLICRSMEVSTQLA----RAFTMDCITLE 171
Query: 597 GTFYQKSGIMSGGSLDLARKAKRWDDKEMGNLKAQKEKLSEEL 639
G G ++GG D RK++ K++ + + +L +L
Sbjct: 172 GDQVSHRGALTGGYYD-TRKSRLELQKDVRKAEEELGELEAKL 213
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 93.7 bits (233), Expect = 2e-19
Identities = 62/363 (17%), Positives = 144/363 (39%), Gaps = 34/363 (9%)
Query: 100 QLFKLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQE 159
L K+ E +++ ++EL + K +K E ++ E + +E+ L +L +
Sbjct: 848 PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907
Query: 160 IREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADV 219
E + + + +E + ++ ++ ++ +++ + + + DLE QL +
Sbjct: 908 YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE 967
Query: 220 RK--RKAEYERQSIPGRDINLES--AQDVEINKKRPSLIKS-KERVSHIQKKLASAKKSL 274
+K + E+ + G+ +E + N K K +ERVS + LA ++
Sbjct: 968 EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKA 1027
Query: 275 VEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATK 334
+ + H I++LE +L K + E E+ L+ E
Sbjct: 1028 KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIK----------------RKLEGE--- 1068
Query: 335 RAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQ 394
L E + +L +L ++ + E++ +E+ + + IR+
Sbjct: 1069 -----SSDLHEQIAELQAQIAELKAQLAKK---EEELQAALARLEDETSQKNNALKKIRE 1120
Query: 395 NEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEELGDA--KTDKHEDTRRKKKQE 452
E+ + D ++ E + ++ + ++L +ELE + EL D T ++ R ++
Sbjct: 1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKD 1180
Query: 453 LVE 455
+
Sbjct: 1181 DDD 1183
Score = 83.7 bits (207), Expect = 2e-16
Identities = 52/367 (14%), Positives = 139/367 (37%), Gaps = 48/367 (13%)
Query: 46 RLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLY 105
R + EM +EE + +++ AE KE + + + + + + +E + E E
Sbjct: 854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913
Query: 106 ----------HNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAK 155
E + E+E +++++ ++++ K+K + + + +++ K
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Query: 156 VDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQ 215
+ E D K+ + ++ + N K+ LE +
Sbjct: 974 LQLEKVTAD---------------------GKIKKMEDDILIMEDQNNKLTKERKLLEER 1012
Query: 216 LADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAKKSLV 275
++D+ AE E + K + +S ++ +L +KS
Sbjct: 1013 VSDLTTNLAEEEEK----------------AKNLTKLKNKHESMISELEVRLKKEEKSRQ 1056
Query: 276 EVRQANEAHNKDIADLETQLADVRKRKAEYERQ-SIPGRDINLESAQMTEYTNLKAEATK 334
E+ + + +DL Q+A+++ + AE + Q + ++ A++ + T+ K A K
Sbjct: 1057 ELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALK 1116
Query: 335 RAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQ 394
+ ++ + + + + ++ + +Q+ E++ + E+E+ ++
Sbjct: 1117 KIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGS 1176
Query: 395 NEASLKD 401
+ D
Sbjct: 1177 DYKDDDD 1183
Score = 81.8 bits (202), Expect = 8e-16
Identities = 63/314 (20%), Positives = 135/314 (42%), Gaps = 10/314 (3%)
Query: 44 YERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFK 103
+ L+ + Q EE N+ K + EA+ E ++ E + E+E ++ +
Sbjct: 880 LKELEQKHTQLCEEKNLLQEKLQAETELYAEAE-EMRVRLAAKKQELEEILHEMEARIEE 938
Query: 104 LYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREM 163
E ++L+ E K + ++ +E + E+ E ++ + E+ + ++ K++ +I M
Sbjct: 939 E---EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995
Query: 164 DVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRK 223
+ + NK +ERVS + LA ++ + + H I++LE +L K +
Sbjct: 996 EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR 1055
Query: 224 AEYERQSIPGRDINLESAQ-DVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANE 282
E E+ R + ES+ +I + + + + K +++ +++L +A L +
Sbjct: 1056 QELEKIK---RKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKN 1112
Query: 283 AHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATKRAGKILQQ 342
K I +LE+ ++D+ + E E+ + + + E LK E Q
Sbjct: 1113 NALKKIRELESHISDL-QEDLESEKAAR-NKAEKQKRDLSEELEALKTELEDTLDTTATQ 1170
Query: 343 LDTINREQKGDQDK 356
+ + K D DK
Sbjct: 1171 QELRGSDYKDDDDK 1184
Score = 57.5 bits (139), Expect = 2e-08
Identities = 39/255 (15%), Positives = 104/255 (40%), Gaps = 10/255 (3%)
Query: 615 RKAKRWDDKEMGNLKAQKEKLSEELREAMKKSRK-ESELNTVQSTIKGLEIRLNYSRQDL 673
+ ++ L A+K++L E L E + + E +Q+ K ++ ++ + L
Sbjct: 905 TELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQL 964
Query: 674 QNTKSQIAKLEAEIDALNARADATEPKIKAIEASMTARGDTISRKKEEMNSVEDIVFRDF 733
+ ++ KL+ E + + E I +E +E ++ + + +
Sbjct: 965 EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024
Query: 734 CKSIGVSTIR-----QYEEAELRSQQERQKICQDKDTKKNVARWERA----VSDDEEELA 784
K+ ++ ++ E E+R ++E + + + K+ + +++ + ++A
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084
Query: 785 RAQGAEEKLAGEMRAEADKLENMRATRLTKKQAVDAMDEEIGKARREVGSIAKDIQAAQK 844
+ K E++A +LE+ + + + + ++ I + ++ S A+K
Sbjct: 1085 ELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK 1144
Query: 845 SCVNLESKLEMKKSE 859
+L +LE K+E
Sbjct: 1145 QKRDLSEELEALKTE 1159
Score = 56.4 bits (136), Expect = 5e-08
Identities = 33/209 (15%), Positives = 100/209 (47%), Gaps = 21/209 (10%)
Query: 40 LKDDYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAE---KYQRIREEIVAKE 96
++ ++L+AE + +++ M L+++ E K++ ++ K +++ ++I+ E
Sbjct: 939 EEERSQQLQAEKKKMQQQ--MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME 996
Query: 97 VEHQLFKLY--HNETDIKELEDELDKKKGEVEKIERRKEKAENI-------LREKKKEQG 147
++ E + +L L +++ + + + + K K E++ L++++K +
Sbjct: 997 DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQ 1056
Query: 148 ALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNK 207
L + K++ E ++ +I + + + + K +++ +++L +A L + K
Sbjct: 1057 ELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALK 1116
Query: 208 DIADLETQLADV-------RKRKAEYERQ 229
I +LE+ ++D+ + + + E+Q
Sbjct: 1117 KIRELESHISDLQEDLESEKAARNKAEKQ 1145
Score = 56.0 bits (135), Expect = 7e-08
Identities = 41/321 (12%), Positives = 106/321 (33%), Gaps = 17/321 (5%)
Query: 625 MGNLKAQKEKLSEELREAMKKSRKESELNTVQSTIKGLEIRLNYSRQDLQNTKSQIAKLE 684
+G K E + + + Q+ +G R +++ Q I ++
Sbjct: 768 IGQSKIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAK--RQQQLESIFCIQ 825
Query: 685 AEIDALNARADATEPKIKAIEASMTARGDTISRKKEEMNSVEDIVFRDFCKSIGVSTIRQ 744
+ + + + +R++EEM + ++ + R + +
Sbjct: 826 YNVRSFMNVXHWPWMXLFFXIXPLLKV----TRQEEEMQAKDEELQRTKERQQKAEAELK 881
Query: 745 YEEAELRSQQERQKICQDKDTKKNVARWERAVSDDEEELARAQGAEEKLAGEMRAEADKL 804
E + E + + Q+K + ++ EE R +++L + ++
Sbjct: 882 ELEQKHTQLCEEKNLLQEK-----LQAETELYAEAEEMRVRLAAKKQELEEILHEMEARI 936
Query: 805 ENMRATRLTKKQAVDAMDEEIGKARREVGSIAKDIQAAQKSCVNLESKLEMKKSERHDIL 864
E + M +++ ++ Q Q V + K+ KK E ++
Sbjct: 937 EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI--KKMEDDILI 994
Query: 865 MNCKMNDIVLPMLRVQKYDRKLAKSIQEMTSRLQTIQAPNLRAMEKLEHAKENLMKTNEE 924
M + N + +++ L ++ E + + + + K E L ++
Sbjct: 995 MEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT----KLKNKHESMISELEVRLKK 1050
Query: 925 FENARKRAKKAKANFDRIKKE 945
E +R+ +K K + +
Sbjct: 1051 EEKSRQELEKIKRKLEGESSD 1071
Score = 50.2 bits (120), Expect = 4e-06
Identities = 40/303 (13%), Positives = 102/303 (33%), Gaps = 31/303 (10%)
Query: 640 REAMKKSRKESELNTVQSTIKGLEIRLNYSRQDLQNTKSQIAKLEAEIDALNARADATEP 699
+ K+ ++ + +Q ++ ++ L + K+ + + + A+ + +
Sbjct: 809 KAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQR 868
Query: 700 KIKAIEASMTARGDTISRKKEEMNSVEDIVFRDFCKSIGVSTIRQYEEAELRSQQERQKI 759
+ + + ++ E+ ++ +++ +AE E +++
Sbjct: 869 TKERQQKAEAEL-----KELEQKHTQLCEEKNL---------LQEKLQAETELYAEAEEM 914
Query: 760 CQDKDTKKN-----VARWERAVSDDEEELARAQGAEEKLAGEMRAEADKLENMRATRLTK 814
KK + E + ++EE + Q ++K+ +M ++LE A R
Sbjct: 915 RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974
Query: 815 KQAVDAMDEEIGKARREVGSIAKDIQAAQKSCVNLESKLEMKKSERHDILMNCKMNDIVL 874
+ D +I K ++ + K LE ++ + + K ++
Sbjct: 975 QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE--EEEKAKNL-- 1030
Query: 875 PMLRVQKYDRKLAKSIQEMTSRLQTIQAPN---LRAMEKLEHAKENLMKTNEEFENARKR 931
K K I E+ RL+ + + KLE +L + E +
Sbjct: 1031 -----TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085
Query: 932 AKK 934
K
Sbjct: 1086 LKA 1088
Score = 42.5 bits (100), Expect = 8e-04
Identities = 24/132 (18%), Positives = 53/132 (40%)
Query: 39 ALKDDYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVE 98
+ + E++K ++ + + + + +AE K +K+E + R E +
Sbjct: 1053 KSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKN 1112
Query: 99 HQLFKLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQ 158
+ L K+ E+ I +L+++L+ +K K E++K L K E A +
Sbjct: 1113 NALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQE 1172
Query: 159 EIREMDVEINKK 170
+ + K
Sbjct: 1173 LRGSDYKDDDDK 1184
Score = 37.9 bits (88), Expect = 0.023
Identities = 19/116 (16%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 614 ARKAKRWDDKEMGNLKAQKEKLSEELREAMKK-SRKESELNTVQSTIKGLEIRLNYSRQD 672
K KR + E +L Q +L ++ E + ++KE EL + ++ + N + +
Sbjct: 1058 LEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117
Query: 673 LQNTKSQIAKLEAEIDALNARADATEPKIKAIEASMTARGDTISRKKEEMNSVEDI 728
++ +S I+ L+ ++++ A + E + + + + A + + + +++
Sbjct: 1118 IRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQEL 1173
Score = 30.2 bits (68), Expect = 5.2
Identities = 48/342 (14%), Positives = 131/342 (38%), Gaps = 20/342 (5%)
Query: 317 LESAQMTEYTNLKAEATKRAGKILQQLDTINREQKGDQDKLDNE---LRQQVQTQNEIKK 373
L+ + E K E +R + Q+ + +E + +L E L++++Q + E+
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909
Query: 374 KRHEMEEA-QKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIE 432
+ EM + +LE+ + + EA +++ ++ ++L ++ + ++ +L+++ +E
Sbjct: 910 EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ----LE 965
Query: 433 ELGDAKTDKHEDTRRKKKQELVENFKKAYSGVYDRMINMCHPVHKRYNVAITKVLGKYME 492
E A+ + + ++ + + D+ + + + + +
Sbjct: 966 EEEAARQKLQLE--KVTADGKIKKMEDDILIMEDQNNKL-----TKERKLLEERVSDLTT 1018
Query: 493 AIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTKPLKERLRNIRDPKNVKLLYDVLKY 552
+ + EK L K + E L + + + ++ L I+ + ++ L
Sbjct: 1019 NLAEEEEKAKNLTKLKNKHESMISE--LEVRLKKEEKSRQELEKIK--RKLEGESSDLHE 1074
Query: 553 QPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALDGTFYQKSGIMSGGSLD 612
Q +++ + E A + E + +A+ + L+
Sbjct: 1075 QIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQE-DLE 1133
Query: 613 LARKAKRWDDKEMGNLKAQKEKLSEELREAMKKSRKESELNT 654
+ A+ +K+ +L + E L EL + + + + EL
Sbjct: 1134 SEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRG 1175
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 75.3 bits (184), Expect = 9e-14
Identities = 92/653 (14%), Positives = 186/653 (28%), Gaps = 168/653 (25%)
Query: 377 EMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVI--EEL 434
E E Q + + + + +++Q + ++ EE+
Sbjct: 10 ETGEHQYQYKDILSVFED---------AFVDNFD---------CKDVQDMPKSILSKEEI 51
Query: 435 GDAKTDKHEDTR--------RKKKQELVENF-----KKAYSGVYDRMINMCHPVHKRYNV 481
K + K++E+V+ F + Y + +
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-------IKTEQR- 103
Query: 482 AITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTKP---LKERLRNIR 538
R+ I+ D + F + + +P L++ L +R
Sbjct: 104 ---------------QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 539 DPKNV---------K--LLYDVLKYQPEDIKRVVLFATN----NALVCETPEDAMKVAYD 583
KNV K + DV K N C +PE +++
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCL----SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 584 IEPQHRYDAVALDGTFYQKSGIMSGGSLDL--ARKAKRWDDKEMGNLKAQKEKL------ 635
+ Q +D + +S S L + + R + K + L
Sbjct: 205 LLYQ-------IDPNWTSRSDHSSNIKLRIHSIQAELR----RLLKSKPYENCLLVLLNV 253
Query: 636 -SEELREAMK---K----SRKESELNTVQSTIKGLEIRLNYSRQDL--QNTKSQIAK-LE 684
+ + A K +R + + + + I L++ L KS + K L+
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT-HISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 685 AEIDALNARADATEP-KIKAIEASMTARGDTISR-KKEEMNSVEDIVFRDFCKSIGVSTI 742
L T P ++ I S+ T K + + I I S +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI--------IESS-L 363
Query: 743 RQYEEAELRSQQERQKICQDKDTK---KNVAR-WERAVSDDEEE---------LARAQGA 789
E AE R +R + ++ W + D L Q
Sbjct: 364 NVLEPAEYRKMFDRLSVFPP-SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 790 EEK-----LAGEMRAEADKLENMRATRLTKKQAVDAMDEEIGKARREVGSIA-------K 837
E + E++ + + + + + D + K
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 838 DIQAAQKSC------VN---LESKLEMKKSERHDILMNCKMNDIVLPMLRVQKYDRKLAK 888
+I+ ++ ++ LE K+ RHD I+ + +++ Y +
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKI------RHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 889 SIQEMTSRLQTIQAPNLRAMEKLEHAKEN------LMKTNEE-FENARKRAKK 934
+ + + I + E L +K LM +E FE A K+ ++
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 72.2 bits (176), Expect = 8e-13
Identities = 79/644 (12%), Positives = 196/644 (30%), Gaps = 199/644 (30%)
Query: 41 KD--DYER--LKAE----MIQAEEETNMSYL-------KKKGVVAERKEAKIEKDEAEKY 85
KD D + L E +I +++ + + K++ +V + E + +
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 86 QRIREEIVAKEVEHQLFKLYHNE--TDIKELEDELDKKKGEVEKIERRKEKAENILREKK 143
I+ E + +++ + D + K V +++ K L E +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF------AKYNVSRLQ-PYLKLRQALLELR 148
Query: 144 KEQG------------ALNRELAKVDQEIREMDVEI------NKKRP-SLIKSKERVSH- 183
+ + ++ + +MD +I N P ++++ +++ +
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 184 IQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDI-NLESAQ 242
I S ++ I ++ +L + K K YE + ++ N ++
Sbjct: 209 IDPNWTSRSDHSSNIKL-------RIHSIQAELRRLLKSK-PYENCLLVLLNVQNAKAWN 260
Query: 243 DVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRK 302
++ K L+ + R + L++A + + + + D ++++ L
Sbjct: 261 AFNLSCK--ILLTT--RFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKY---- 310
Query: 303 AEYERQSIPGRDINLESAQMTEYTNLKAEATKRA-------GKILQQ-LDTINREQKGDQ 354
++ L E + ++ L T + + +
Sbjct: 311 ------------LDCRPQD------LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 355 DKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEEL----- 409
DKL + + E +K D+L + + + L
Sbjct: 353 DKLTTIIESSLNVLEP--------AEYRKMFDRL--------SVFPPSAHIPTILLSLIW 396
Query: 410 -NSDVGSSKNRVQELQKELEQVIEELGDAKTDKHEDTRRKKKQELVENFKKAYSGVYDRM 468
+ + ++ V+ +L K + + K++ +
Sbjct: 397 FDVI-----------KSDVMVVVNKL-------------HKYSLVEKQPKESTISIPSIY 432
Query: 469 INMCHP------VHKRYNVAITKVLGKYMEAIVVDSEKTARLCI-----QYLKDH----- 512
+ + +H+ ++ Y DS+ + ++ H
Sbjct: 433 LELKVKLENEYALHR-------SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 513 -----QLDPETFLPIDYLQTK---------------PLKERLRNIR------DPKNVKLL 546
L FL +L+ K ++L+ + DPK +L+
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Query: 547 YDVLKYQPE-----------DIKRVVLFATNNALVCETPEDAMK 579
+L + P+ D+ R+ L A + A+ E+A K
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF----EEAHK 585
Score = 67.2 bits (163), Expect = 3e-11
Identities = 103/684 (15%), Positives = 219/684 (32%), Gaps = 181/684 (26%)
Query: 145 EQGALNRELAKVDQE--IREMDVEINKKRPSLIKSKERVSHIQKK-------------LA 189
E +++ V ++ + D + + P I SKE + HI L
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 190 SAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVEINKK 249
S ++ +V+ + E + L + + +++ + R I RD L + D ++ K
Sbjct: 73 SKQEEMVQ-KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYN--DNQVFAK 128
Query: 250 RPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLE-------TQLA-DVRKR 301
VS +Q L +++L+E+R K++ ++ T +A DV
Sbjct: 129 YN--------VSRLQPYLK-LRQALLELR-----PAKNVL-IDGVLGSGKTWVALDVCL- 172
Query: 302 KAEYERQSIPGRDINLESAQMTEYTNLKAEATKRAGKILQQLDTINREQKGDQDKLDNEL 361
Y+ Q I + NLK + +L+ L + ++D
Sbjct: 173 --SYKVQCKMDFKIF--------WLNLKNCNSPET--VLEMLQKLLY-------QIDPNW 213
Query: 362 RQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLK--DNKKLKEELNS-DVGSSKN 418
+ + IK + H ++ +R+ K + + L N + + N+ ++
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN----CLLVLLNVQNAKAWNAFNLSC--- 266
Query: 419 RVQELQKELEQVIEELGDAKTDKHEDTRRKKKQELVENFKKAYSGVYDRMINMCHPVHKR 478
K L + TR K+ V +F A + + + + +
Sbjct: 267 ------KIL--LT-------------TRFKQ----VTDFLSAATTTHISLDHHSMTLTPD 301
Query: 479 YNVAITKVLGKYMEAIVVDSEKTAR--------LCIQYLKDHQLDPETFLPIDYLQTKPL 530
++ L KY++ D + + + ++D T+ ++ L
Sbjct: 302 EVKSL---LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG---LATWDNWKHVNCDKL 355
Query: 531 KERLR---NIRDPKNVKLLYDVLKYQPED--IKRVVLFATNNALVCE-TPEDAMKVAYDI 584
+ N+ +P + ++D L P I ++L + + + D M V +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL----SLIWFDVIKSDVMVVVNKL 411
Query: 585 EPQHRYDAVALDGTFYQKSGIMSGGSLDLARKAKRWDDKEM---------GNLKAQKEKL 635
H+Y V K +S S+ L K K ++ + + L
Sbjct: 412 ---HKYSLVEKQ----PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 636 SEELREA---------MKKSRKESELNTVQSTIKGLEIRLNYSRQDLQNTKSQIAKLEAE 686
+ +K + + + L++ L+ K+ +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFR------MVFLDFRF--LE------QKIRHD 510
Query: 687 IDALNARADATE--PKIKAIEASMTARGDTISRKKEEMNSVEDIVFRDFCKSIGVSTIR- 743
A NA ++K + + R V I+ DF I + I
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERL------VNAIL--DFLPKIEENLICS 562
Query: 744 ----------QYEEAELRSQQERQ 757
E+ + + +Q
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 59.5 bits (143), Expect = 5e-09
Identities = 82/591 (13%), Positives = 181/591 (30%), Gaps = 175/591 (29%)
Query: 512 HQLDPET-------------FLP--IDYLQTKPLKERLRNIRDPKNVKLLYDVLKYQPED 556
H +D ET F +D K +++ ++I + + ++ +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID---HIIM-SKDA 60
Query: 557 IKRV-VLFATNNALVCETPEDAMKVAYDIEPQHRYD--AVALDGTFYQKSGIMSGGSLDL 613
+ LF T + E+ ++ + + Y + Q S + + +
Sbjct: 61 VSGTLRLFWT----LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR---MYI 113
Query: 614 ARKAKRWDDKE-MGNLKAQKEKLSEELREAMKKSRKESELNTVQSTIKG----------L 662
++ + ++D + + + +LR+A+ + R + I G L
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-----LIDGVLGSGKTWVAL 168
Query: 663 EIRLNYSRQDLQN------TKSQIAKLEAEIDALNARADATEPKIKAIEASMTARGDTIS 716
++ L+Y Q + E ++ L + I+ + T+R D S
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-------LYQIDPNWTSRSDHSS 221
Query: 717 RKKEEMNSVEDIVFRDFCKSIGVSTIRQYEEAELRSQQERQKICQDKDTKKNVARWERAV 776
K ++S++ R KS + YE L + + V
Sbjct: 222 NIKLRIHSIQA-ELRRLLKS------KPYENCLL--------VLLN-------------V 253
Query: 777 SDDEEELARAQGAEEKLAGEMRAEADKLENMRATRLTKKQAVDAMDEEIGKAR-----RE 831
+ +A +A + + R
Sbjct: 254 QN------------------------------------AKAWNAFN---LSCKILLTTRF 274
Query: 832 VGSIAKDIQAAQKSCVNLESKLE-MKKSERHDIL---MNCKMNDIVLPMLRVQKYDRKL- 886
+ + AA + ++L+ + E +L ++C+ D LP + R+L
Sbjct: 275 K-QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--LPREVLTTNPRRLS 331
Query: 887 --AKSIQEMTSRLQTIQAPNLRAMEKLEHAKENLMKTNEEFENARKRAKKAKANFDRIKK 944
A+SI++ + + N +KL E+ + E E +
Sbjct: 332 IIAESIRDGLATWDNWKHVNC---DKLTTIIESSLNVLEPAEY----------------R 372
Query: 945 ERYDKFTRCF-EHVSNEIDGAGSESVLPR--PFLGPENPEEPLTYRVSTTIVSHRYHPAP 1001
+ +D+ + F I +L + + + ++V + +
Sbjct: 373 KMFDRLS-VFPPSA--HI----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 1002 FFVLD-EIDAALDNTNIGK-----VASYIVTKTQDSLQTIVISLKEEFFSH 1046
+ ++ + N V Y + KT DS I L + F+SH
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Score = 38.3 bits (88), Expect = 0.016
Identities = 39/301 (12%), Positives = 86/301 (28%), Gaps = 89/301 (29%)
Query: 11 DNFKSYKGKFSIGPLKKFTAVIGPNGSGALKDDYERLK-----------------AEMIQ 53
DN+K ++ V+ P + ++RL ++I+
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAE---YRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 54 AEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQL-FKLYHNETDIK 112
++ ++ L K + +EK E I + +L +
Sbjct: 402 SDVMVVVNKLHKYSL--------VEKQPKESTISI----------PSIYLELKVKLENEY 443
Query: 113 ELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRE-----------LAKVDQEIR 161
L + ++ NI + + L ++
Sbjct: 444 ALHRSI---------VDHY-----NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP-- 487
Query: 162 EMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRK 221
E +++K+ R + A N + L T L ++
Sbjct: 488 ERMTLFRMVFLDF-------RFLEQKI----------RHDSTAWNASGSILNT-LQQLKF 529
Query: 222 RKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVE--VRQ 279
K Y + P + + + D + K +LI SK ++ L + +++ E +Q
Sbjct: 530 YK-PYICDNDPKYERLVNAILDF-LPKIEENLICSKYT-DLLRIALMAEDEAIFEEAHKQ 586
Query: 280 A 280
Sbjct: 587 V 587
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 61.3 bits (149), Expect = 2e-09
Identities = 26/229 (11%), Positives = 77/229 (33%), Gaps = 15/229 (6%)
Query: 234 RDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEV-----RQANEAHNKDI 288
R + + + + + + +I+ R + K++V + R + K +
Sbjct: 850 RGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKL 909
Query: 289 ADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATKRAGKILQQLDTINR 348
+ +K E + I ++ E ++ + T
Sbjct: 910 KIEARSVERYKKLHIGLENK------IMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE 963
Query: 349 EQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIR----QNEASLKDNKK 404
+ + D ++L + N + + E+ + +K + + + + + + ++
Sbjct: 964 KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQ 1023
Query: 405 LKEELNSDVGSSKNRVQELQKELEQVIEELGDAKTDKHEDTRRKKKQEL 453
L EL K +EL + + +E+ + K + ++ + +L
Sbjct: 1024 LVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDL 1072
Score = 60.9 bits (148), Expect = 2e-09
Identities = 24/188 (12%), Positives = 72/188 (38%), Gaps = 8/188 (4%)
Query: 45 ERLKAEMIQAE---EETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQL 101
K+ +IQ + Y + + + + ++++ E A+ VE
Sbjct: 863 REHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIE--ARSVERYK 920
Query: 102 FKLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIR 161
E I +L+ ++D++ E + + + E + ++ + L ++E +
Sbjct: 921 KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAK 980
Query: 162 EMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRK 221
+ + + K ++ + Q + + ++ + + E + +++L+ Q ++
Sbjct: 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE---QLVSELKEQNTLLKT 1037
Query: 222 RKAEYERQ 229
K E R+
Sbjct: 1038 EKEELNRR 1045
Score = 60.5 bits (147), Expect = 3e-09
Identities = 43/316 (13%), Positives = 96/316 (30%), Gaps = 45/316 (14%)
Query: 71 ERKEAKIEKDE--AEKYQRIREEIVAKEVEHQLFKLYHNETDIKELEDELDKKKGEVEKI 128
R A + A Q+ + V ++ + L+ L +
Sbjct: 806 ARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCM------RDATIALQALLRGYLVRNKYQ 859
Query: 129 ERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKL 188
+E I+++ + A + V + ++ +E KKL
Sbjct: 860 MMLREHKSIIIQKHVRGWLARVHY-----HRTLKAIVYLQCCYRRMMAKRE-----LKKL 909
Query: 189 ASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVEINK 248
+S+ ++ + I L+ ++ + K + NLE E K
Sbjct: 910 KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMN-----NLEITYSTETEK 964
Query: 249 KRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQ 308
+ V ++ AK + V E +IA L +L + K E
Sbjct: 965 L-------RSDVERLRMSEEEAKNATNRVLSLQE----EIAKLRKELHQTQTEKKTIEEW 1013
Query: 309 SIPGRDINLESAQMTEYTNLKAEATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQ 368
E L +E ++ + + + +NR ++ + +++
Sbjct: 1014 ---------ADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV-- 1062
Query: 369 NEIKKKRHEMEEAQKR 384
E K+ ++ + + R
Sbjct: 1063 EETKQLELDLNDERLR 1078
Score = 47.0 bits (112), Expect = 4e-05
Identities = 41/319 (12%), Positives = 98/319 (30%), Gaps = 45/319 (14%)
Query: 613 LARKAKRWDDKEMGNLKAQKEKLSEELREAMKKSRKESELNTVQSTIKGLEIRLNYSRQD 672
AR + + + QK + +R+ + R + +Q+ ++G +R Y
Sbjct: 805 QARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATI--ALQALLRGYLVRNKYQMML 862
Query: 673 LQNTKSQIAKLEAEIDALNARADATEPKIKAIEASMTARGDTISRKKEEMNSVEDIVFRD 732
++ I + + AR + R R+ +++
Sbjct: 863 REHKSIII---QKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKL---------- 909
Query: 733 FCKSIGVSTIRQYEEAELRSQQERQKICQDKDTKKNVARWERAVSDDEEELARAQGAEEK 792
+ E RS + +K+ + K + + +R + + +E
Sbjct: 910 --------------KIEARSVERYKKLHIGLENK--IMQLQRKIDEQNKEYKSLLEKMNN 953
Query: 793 LAGEMRAEADKLENMRATRLTKKQAVDAMDEEIGKARREVGSIAKDIQAAQKSCVNLESK 852
L E +KL + ++ + + E+ + K++ Q +E
Sbjct: 954 LEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEW 1013
Query: 853 LEMKKSERHDILMNCKMNDIVLPMLRVQKYDRKLAKSIQEMTSRLQTIQAPNLRAMEKLE 912
+ K E ++ +++ + L +E+ R+ MEK
Sbjct: 1014 ADKYKHETEQLVS------------ELKEQNTLLKTEKEELNRRIHDQAKEITETMEK-- 1059
Query: 913 HAKENLMKTNEEFENARKR 931
E + + + R R
Sbjct: 1060 KLVEETKQLELDLNDERLR 1078
Score = 42.0 bits (99), Expect = 0.001
Identities = 33/230 (14%), Positives = 83/230 (36%), Gaps = 13/230 (5%)
Query: 613 LARKAKRWDDKEMGNLKAQKEKLSEELREAMKKSRKESELNTVQSTIKGLEIRLNYSRQ- 671
L R + +E ++ QK R ++ K +Q + + + +
Sbjct: 853 LVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY--LQCCYRRMMAKRELKKLK 910
Query: 672 ----DLQNTKSQIAKLEAEIDALNARADATEPKIKAIEASMTARGDTISRKKEEMNSVED 727
++ K LE +I L + D + K++ M T S + E++ S +
Sbjct: 911 IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970
Query: 728 IVFRDFCKSIGVSTIRQYEEAELRSQQ------ERQKICQDKDTKKNVARWERAVSDDEE 781
+ ++ + + E+ + + +K ++ K E+ VS+ +E
Sbjct: 971 RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKE 1030
Query: 782 ELARAQGAEEKLAGEMRAEADKLENMRATRLTKKQAVDAMDEEIGKARRE 831
+ + +E+L + +A ++ +L ++ +D + R +
Sbjct: 1031 QNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 42.0 bits (99), Expect = 0.001
Identities = 29/206 (14%), Positives = 72/206 (34%), Gaps = 20/206 (9%)
Query: 265 KKLASAKKSLVEVRQANEAHNKDI---ADLETQLADVRKRKAEYERQSIPGRDINLESAQ 321
+ ++ V ++ + I A L L + + E +SI +
Sbjct: 820 IIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSI------IIQKH 873
Query: 322 MTEYTNLKAEATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEA 381
+ + + Q K + KL E R + + +++ +
Sbjct: 874 VRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQL 933
Query: 382 QKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQV------IEELG 435
Q++ID+ ++ ++ L+ L+ +++ ++ V+ L+ E+ + L
Sbjct: 934 QRKIDEQN---KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ 990
Query: 436 D--AKTDKHEDTRRKKKQELVENFKK 459
+ AK K + +K+ + E K
Sbjct: 991 EEIAKLRKELHQTQTEKKTIEEWADK 1016
Score = 32.8 bits (75), Expect = 0.70
Identities = 44/307 (14%), Positives = 92/307 (29%), Gaps = 55/307 (17%)
Query: 641 EAMKKSRKESELNTVQSTIKGLEIRLNYSRQDLQNTKSQIAKLEAEIDALNARADATEPK 700
E ++ + + +Q TI+G +R Y + ++ + AR AT +
Sbjct: 760 EKIRADKLRAACIRIQKTIRGWLMRKKY-----MRMRRAAITIQRYVRGHQARCYATFLR 814
Query: 701 IK--AIEASMTARGDTISRKKEEMNSVEDIVFRDFCKSIGVSTIRQYEEAELRSQQERQK 758
AI R + ++ + M + +A LR R K
Sbjct: 815 RTRAAIIIQKFQRMYVVRKRYQCMRDATIAL-----------------QALLRGYLVRNK 857
Query: 759 ICQDKDTKKNVARWERAVSDDEEELARAQGAEEKLAGEMRAEADKLENMRATRLTKKQAV 818
K++ ++ R A ++A R + K++
Sbjct: 858 YQMMLREHKSII---------IQKHVRGWLARVHYHRTLKAIVYLQCCYRR-MMAKRELK 907
Query: 819 DAMDEEIGKARREVGSIAKDIQAAQKSCVNLESKLEMKKSERHDILMNCKMNDIVLPMLR 878
E R V K + + L+ K++ + E L
Sbjct: 908 KLKIEA-----RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS--------------LL 948
Query: 879 VQKYDRKLAKSIQEMTSRLQTIQAPNLRAMEKLEHAKENLMKTNEEFENARKRAKKAKAN 938
+ L + T +L++ + E+ ++A ++ EE RK + +
Sbjct: 949 EKM--NNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006
Query: 939 FDRIKKE 945
I++
Sbjct: 1007 KKTIEEW 1013
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 55.4 bits (134), Expect = 6e-09
Identities = 24/58 (41%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 996 RYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053
++ PAPF++ DEIDA LD+ N+ +VA I +++S Q IVI+L++ ++AD ++G+
Sbjct: 83 KFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKES-QFIVITLRDVMMANADKIIGV 139
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 53.8 bits (128), Expect = 3e-07
Identities = 50/402 (12%), Positives = 128/402 (31%), Gaps = 14/402 (3%)
Query: 38 GALKDDYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEV 97
L+ ++ L+ ++ + M K +E+ E + + EI E
Sbjct: 308 CQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLER 367
Query: 98 EHQLFKLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVD 157
L + + + E D K+ +++ + I + K+ A +LA
Sbjct: 368 LDHLAEKFRQK--ASIHESWTDGKEAMLQQKDYETATLSEI-KALLKKHEAFESDLAAHQ 424
Query: 158 QEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLA 217
+ ++ + V+ +K+ +L + Q + L +
Sbjct: 425 DRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETID 484
Query: 218 DVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEV 277
+ A+ + +E QD I + + L A K +
Sbjct: 485 QLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAI 544
Query: 278 RQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATKRAG 337
+ +K + +A Q I G+ ++ E R
Sbjct: 545 LGIHNEVSKIVQTYHVNMAGTNP-YTTITPQEINGKWEHVRQLVP-RRDQALMEEHAR-- 600
Query: 338 KILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHE-MEEAQKRIDKLEDHIRQNE 396
QQ + + ++ + + ++ +++ I + H +E+ + + E I +
Sbjct: 601 --QQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYK 658
Query: 397 ASLKD----NKKLKEELNSDVGSSKNRVQELQKELEQVIEEL 434
+ +++++E L D + ++ ++ EQ++ +
Sbjct: 659 PKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTI 700
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 3e-07
Identities = 65/348 (18%), Positives = 105/348 (30%), Gaps = 130/348 (37%)
Query: 601 QKSGIMSGGSLDLARK---AKR-WD--DKEMGNLKAQKEKLSEELREAMKKSRKESELNT 654
Q+ G M G +DL + A+ W+ D K+ + + + N
Sbjct: 1627 QEQG-M--G-MDLYKTSKAAQDVWNRADNHF------KDTYGFSILDIVIN-------NP 1669
Query: 655 VQSTI-----KGLEIRLNYSRQDLQNTKSQIAKLEAEIDALNARA------------DAT 697
V TI KG IR NYS + K E +N + AT
Sbjct: 1670 VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
Query: 698 E---PKIKAIEASMTARGDTISRKKEEMNSVEDIVFRDFCK---SIGVSTIRQY------ 745
+ P + +E + + K + D F S+G +Y
Sbjct: 1730 QFTQPALTLMEKAAFED---L---KSKGLIPADATF-----AGHSLG-----EYAALASL 1773
Query: 746 ------EEAELRSQQERQKICQDKDTKKNVARWERAVSDDEEELARAQGAEEKLAGEMRA 799
E + R Q AV D EL R+ M A
Sbjct: 1774 ADVMSIESL-VEVVFYRGMTMQV------------AVPRD--ELGRSNYG-------MIA 1811
Query: 800 EADKLENMRATRLTKKQAVDAMDEEIGKARREVGSIA----KDIQ---AAQKSCVNLESK 852
+ R ++A+ + E +GK + I ++ Q A +
Sbjct: 1812 ----INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL----- 1862
Query: 853 LEMKKSERHDILMNCKMNDIVLPMLRVQKYD-RKLAKS--IQEMTSRL 897
D + N VL +++QK D +L KS ++E+ L
Sbjct: 1863 ---------DTVTN------VLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 48.9 bits (116), Expect = 1e-05
Identities = 87/532 (16%), Positives = 149/532 (28%), Gaps = 208/532 (39%)
Query: 411 SDVGSSKNRVQELQKELEQVIEELGD-------AKTDKHEDTRRKKKQELVENFKKAYSG 463
S VG + E E L AK + DT K +EL++N+ A
Sbjct: 75 SKVGQFDQVLNLCLTEFENCY--LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARI- 131
Query: 464 VYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETF---- 519
+ R P K+ N A+ A+ E A+L F
Sbjct: 132 MAKR------PFDKKSNSAL-------FRAV---GEGNAQLVAI-----------FGGQG 164
Query: 520 LPIDYLQTKPLKERLRNIRDPKNVKLLYDVLKYQPEDIKRVVLFATN--NALVCETPEDA 577
DY +E LR+ LY Y + ++ F+ + L+ T DA
Sbjct: 165 NTDDY-----FEE-LRD---------LYQT--YHVL-VGDLIKFSAETLSELI-RTTLDA 205
Query: 578 MKV---AYDI-----EPQHR-----------------------YDAVA------------ 594
KV +I P + Y A
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 595 -LDGTFYQKSGIMS------GGS----LDLARKAKR---WDDKEMGNLKAQKEKLSEELR 640
L G G+++ S RKA + +G ++ + + L
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF----IG-VRCYEAYPNTSLP 320
Query: 641 EAM-KKSRKESE-------------LNTVQSTI----------KGLEIRL-NYSRQ---- 671
++ + S + +E VQ + K +EI L N ++
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Query: 672 ----DLQNTKSQIAKLEAEIDALNARADATEPKIKAIEASMTARGDTISRKKEE------ 721
L + K +A +R +E K+K + R ++
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK-----FSNRFLPVA----SPFHSHL 431
Query: 722 MNSVEDIVFRDFCKS----------IGV-STIRQYEEAELRSQQE--RQKICQDKDTKKN 768
+ D++ +D K+ I V T ++ ++LR ++I D +
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDT---FDGSDLRVLSGSISERIV-DCIIRLP 487
Query: 769 VARWERAVSDDE------------------EELARAQGAEEKLAGEMRAEAD 802
V +WE G +AG + D
Sbjct: 488 V-KWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Score = 48.5 bits (115), Expect = 1e-05
Identities = 96/652 (14%), Positives = 167/652 (25%), Gaps = 253/652 (38%)
Query: 484 TKVLGKYMEAIVVDSEKTAR--LCIQYLK--DHQLDPETFLPIDYLQTKPLKERLRNIRD 539
K+L + E D E T L ++L ++P D + L L +
Sbjct: 38 NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV----LNLCLTEFEN 93
Query: 540 PKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKV---------AYDIEPQHRY 590
L + DI +AL + ++ Y
Sbjct: 94 --------CYL--EGNDI---------HALAAKLLQENDTTLVKTKELIKNY-------I 127
Query: 591 DAVALDGTFYQKSGIMSGGSLDLARKAKRWDDKEM------GNLKAQKEKLSEELREAMK 644
A + + K S L R + + + GN + EELR+
Sbjct: 128 TARIMAKRPFDKKS----NSA-LFRAVGEGNAQLVAIFGGQGNT----DDYFEELRD--- 175
Query: 645 KSRKESEL-NTVQSTIKGLEIRLNYSRQDLQNTKSQIAKLE----AEIDALNA-RADATE 698
L T + L + +S + L E ++ L +
Sbjct: 176 -------LYQTYHVLVGDL---IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 699 PKIKAIEASMTARGDTISRKKEEMNSVEDIVFRDFCKSIGVSTIRQYEEAELRSQQERQK 758
P + + IS C IGV + Y
Sbjct: 226 PDKDYLLSI------PIS-----------------CPLIGVIQLAHYVVT---------- 252
Query: 759 ICQDKD-TKKNVARWERAVSDDEEELARAQGAEEKLAGEMRAEADKLENMRATRLTKKQA 817
+ T + + + + +QG + AE D E+
Sbjct: 253 -AKLLGFTPGELRSYLKGAT------GHSQGL---VTAVAIAETDSWESFF------VSV 296
Query: 818 VDAMDEE----IGKARREVGSIAKDIQAAQK--SCVNLESKLEMKKSERHDILMNCKMND 871
A+ IG R + +L + ++ S ++
Sbjct: 297 RKAI--TVLFFIG-VR------------CYEAYPNTSLPPSI-LEDSLENN-------EG 333
Query: 872 IVLPMLRVQKYDRK-LAKSIQEMTSRL---QTIQ-----APNLRAM------EKLEHAKE 916
+ PML + ++ + + + S L + ++ + + + L
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA--KNLVVSGPPQSLYGLNL 391
Query: 917 NLMKTNEEFENARKRAKKAKANFD--RIK-KERYDKFTRCFEHVSNEIDGAGSESVLPRP 973
L R KA + D RI ER KF+ F LP
Sbjct: 392 TL------------RKAKAPSGLDQSRIPFSERKLKFSNRF---------------LP-- 422
Query: 974 FLGPENPEEPLTYRVSTTIVSHRYHPAPFF------VLDEIDAALDNTNIGKVASYI--- 1024
V+ +PF D I+ L N+ A I
Sbjct: 423 --------------VA----------SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 1025 V--TKTQDSLQTIVISLKEEFFSHADSLV-------GICPGSVT-ISSICFG 1066
V T L+ + S+ E D ++ T I + FG
Sbjct: 459 VYDTFDGSDLRVLSGSISE---RIVDCIIRLPVKWETTTQFKATHI--LDFG 505
Score = 47.0 bits (111), Expect = 4e-05
Identities = 100/669 (14%), Positives = 187/669 (27%), Gaps = 224/669 (33%)
Query: 25 LK-KFTAVIGPNGSGALKDDYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAE 83
L+ +F ++ P + D E E +L G V+ +E +
Sbjct: 33 LQEQFNKIL-PEPTEGFAADDE------PTTPAELVGKFL---GYVSSL----VEPSKVG 78
Query: 84 KYQRIREEIVAKEVEHQLFKLYHNETDI----KELEDELDKKKGEVEKIERRKEKAENIL 139
++ ++ + E E+ + L N DI +L E D + +++ + A +
Sbjct: 79 QFDQVLNLCL-TEFENC-Y-LEGN--DIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 140 RE--KKKEQGAL----NRELAKV-----DQ--------EIREMDVEINKKRPSLIKSKER 180
+ KK AL A++ Q E+R+
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD------------------ 175
Query: 181 VSHIQKKLASAKKSLVE--VRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDIN- 237
L LV ++ + E L + + + + G +I
Sbjct: 176 -------LYQTYHVLVGDLIKFSAET-------LSELIRTTLDAEKVFTQ----GLNILE 217
Query: 238 -LESAQDVEINKKRPSLIKSKERVSHIQKKLASAKKS--LVEVRQANEAHNKDIAD-LET 293
LE+ + P + L S S L+ V Q AH A L
Sbjct: 218 WLENPSN------TPD-----------KDYLLSIPISCPLIGVIQL--AHYVVTAKLLGF 258
Query: 294 QLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATKRAGKILQQLDTINREQKGD 353
++R + G L +A T+ K + L I G
Sbjct: 259 TPGELRSYL-----KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI-----G- 307
Query: 354 QDKLDNELRQQVQTQN-----EIKKKRHEMEEAQK---------RIDKLEDHIRQNEASL 399
+R N I + E E ++++D++ + + L
Sbjct: 308 -------VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 400 KDNKKLKEEL-NSDVGSSKNRVQEL---QKELEQVIEELGDAKTDKHEDTRRKK-KQELV 454
K+++ L N KN V + + L + L AK D R +
Sbjct: 361 PAGKQVEISLVNGA----KNLV--VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER-- 412
Query: 455 ENFKKAYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVD-SEKTARLCIQYLKDHQ 513
K +S + + P H L + I D + + ++
Sbjct: 413 ---KLKFSNRFLP-VAS--PFHSHL-------LVPASDLINKDLVKNNVSFNAKDIQ--- 456
Query: 514 LDPETFLPIDYLQTKPLKERLRNIRDPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCET 573
+P+ Y + D +++ +R+V +
Sbjct: 457 ------IPV-Y-----------DTFDGSDLR------VLSGSISERIV------DCIIRL 486
Query: 574 PEDAMKVAYDIEPQHRYD-------------AVALDGTFYQKSG--IMSGGSLDLARKAK 618
P + + H D DGT G ++ G+LD+
Sbjct: 487 PVK-WETTTQFKATHILDFGPGGASGLGVLTHRNKDGT-----GVRVIVAGTLDIN---- 536
Query: 619 RWDDKEMGN 627
D + G
Sbjct: 537 --PDDDYGF 543
Score = 37.7 bits (87), Expect = 0.023
Identities = 33/255 (12%), Positives = 64/255 (25%), Gaps = 105/255 (41%)
Query: 898 QTIQAPNLRAME---------KL-----EHAKENL-------MKTN---EEFENARKRAK 933
Q Q M+ + H K+ + N ++ K
Sbjct: 1624 QGSQEQG-MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 934 KAKANFDRIKKERYDKFTRCFEHVSNEIDGAGSESVLPRPFLGPENPEEPLTYRVST--T 991
+ + N+ + E E + EI+ E F + + L+ +T T
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEIN----EHSTSYTF---RSEKGLLS---ATQFT 1732
Query: 992 ---IVSHRYHPAPFFVLDE-----------------------------IDAALD------ 1013
+ A F L I++ ++
Sbjct: 1733 QPALTLMEK--AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRG 1790
Query: 1014 -------------NTNIGKVA----SYIVTKTQDSLQTIVISLKEEFFSHADSLVGI--- 1053
+N G +A + +Q++LQ +V E LV I
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV----ERVGKRTGWLVEIVNY 1846
Query: 1054 -CPGSVTISSICFGH 1067
+++ G
Sbjct: 1847 NVENQQYVAA---GD 1858
Score = 33.1 bits (75), Expect = 0.67
Identities = 21/162 (12%), Positives = 46/162 (28%), Gaps = 41/162 (25%)
Query: 928 ARKRAKKAKANFDRIKKERYDKFTRCFEHVSNEIDGAGSESVLPRPFLGPENPEEPL--- 984
+ FD++ +F C+ N+I ++ + L EN +
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLE-GNDI-----HALAAK--LLQENDTTLVKTK 120
Query: 985 ----TY---RVSTTIVSHRYHPAPFFVLDEIDAALD-NTNI-------GKVASYIVTKTQ 1029
Y R+ + + F A + N + G Y
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALF-----RAVGEGNAQLVAIFGGQGNTDDYF----- 170
Query: 1030 DSLQTIV---ISLKEEFF-SHADSLVGICPGSVTISSICFGH 1067
+ L+ + L + A++L + ++ + F
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV-FTQ 211
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 53.0 bits (126), Expect = 4e-07
Identities = 54/412 (13%), Positives = 137/412 (33%), Gaps = 25/412 (6%)
Query: 69 VAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDIKELEDELDKKKGEVEKI 128
AE ++ + K + + I A E+ + Y ++K+ D++++ +K
Sbjct: 261 NAEYHQSILAKQQYYFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKD 320
Query: 129 ERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKL 188
+ I ++ + L+ + ++V I++K L + VS Q
Sbjct: 321 N------DFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLA 374
Query: 189 ASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVE--- 245
A ++ V ++ + LA + A + L ++ V
Sbjct: 375 AYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQG 434
Query: 246 -INKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQL------ADV 298
I + + E + ++ L + + L E + + + +
Sbjct: 435 GIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPL 494
Query: 299 RKRKAEYERQSIPGRDINLE-SAQMTEYTNLKAEATKRAGKILQQLDTINREQKGDQDKL 357
R + + + + + K ++ + + N + ++
Sbjct: 495 RAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEV 554
Query: 358 DNELRQQVQTQNEIKKKRHEME----EAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDV 413
N L+ + +E+KK+R +E + + + + EL+
Sbjct: 555 VNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVY 614
Query: 414 GSSKNRVQELQKELEQVIEELGDAKTD----KHEDTRRKKKQELVENFKKAY 461
G +VQE K+ E +++ + + + K + ++E+++N AY
Sbjct: 615 GGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAY 666
Score = 44.6 bits (104), Expect = 2e-04
Identities = 48/421 (11%), Positives = 126/421 (29%), Gaps = 26/421 (6%)
Query: 29 TAVIGPNGSGALKDDYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRI 88
T + +KD +++ + A+++ + Y + + + +
Sbjct: 292 TVASRYDEYVNVKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNV 351
Query: 89 REEIVAKEVEHQLFKLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGA 148
++ ++ + ++ + + D + ++ A +L
Sbjct: 352 PISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAI 411
Query: 149 LNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKD 208
+ V Q I + ++ + + + + + L ++ L E + +
Sbjct: 412 EDVSGDTVPQSILTKSRSVIEQGG-IQTVDQLIKELPELLQRNREILDESLRLLDEEEAT 470
Query: 209 IADLETQLADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLA 268
DL + + +R E L E R L K+ + +++
Sbjct: 471 DNDLRAKFKERWQRTPSNE----------LYKPLRAEGTNFRTVLDKAVQADGQVKECYQ 520
Query: 269 SAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNL 328
S + ++V + + N I + + D ++ + +L
Sbjct: 521 SHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLD-EVKKEREGLENDL 579
Query: 329 KAEATKRAGKILQQLDT-------------INREQKGDQDKLDNELRQQVQTQNEIKKKR 375
K+ K L L ++R G K+ L++Q I+
Sbjct: 580 KSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVS- 638
Query: 376 HEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEELG 435
H+ K+ + + + +L EL +++ EL + L + +
Sbjct: 639 HQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCS 698
Query: 436 D 436
D
Sbjct: 699 D 699
Score = 33.4 bits (75), Expect = 0.44
Identities = 27/182 (14%), Positives = 68/182 (37%), Gaps = 11/182 (6%)
Query: 48 KAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHN 107
+ E+ A N + + V ++ + + K +R E +++ F +
Sbjct: 533 EPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLE---NDLKSVNFDMTSK 589
Query: 108 ETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEI 167
+ ++++ V +++R ++E K+Q L + I+ E
Sbjct: 590 FLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGL-------LKNIQVSHQEF 642
Query: 168 NKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYE 227
+K + S ++ R ++ LA+A + VE+ + K +L L + + ++
Sbjct: 643 SKMKQSNNEANLREEVLK-NLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIV 701
Query: 228 RQ 229
Sbjct: 702 FA 703
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 51.9 bits (125), Expect = 5e-07
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 996 RYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053
P+PF+VLDE+D+ LD+ N + + + Q IVI+ + AD L G+
Sbjct: 238 EIKPSPFYVLDEVDSPLDDYNAERFKRL-LKENSKHTQFIVITHNKIVMEAADLLHGV 294
Score = 34.2 bits (79), Expect = 0.22
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 5 LQYIEVDNFKSYKGKFSIGPLKKFTAVIGPNGSG 38
L+ + + FKS+ IG + TA++GPNGSG
Sbjct: 3 LKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSG 36
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 46.0 bits (109), Expect = 8e-05
Identities = 28/191 (14%), Positives = 80/191 (41%), Gaps = 20/191 (10%)
Query: 111 IKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKK 170
I ++ +++K+ ++E+ + LR+ + + L LA+ ++E+ + + N+K
Sbjct: 1901 INQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQK 1960
Query: 171 RPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQS 230
+++ ++ I++K A + ++VR A K A + + A+ E
Sbjct: 1961 LKQMVQDQQAAE-IKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLRE----- 2014
Query: 231 IPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIAD 290
+E + + + K + I + + +KS+ ++ ++
Sbjct: 2015 ------EVEQLE--------NAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQ 2060
Query: 291 LETQLADVRKR 301
++T+ + V+ +
Sbjct: 2061 IKTESSKVKNK 2071
Score = 37.2 bits (86), Expect = 0.040
Identities = 26/166 (15%), Positives = 61/166 (36%), Gaps = 15/166 (9%)
Query: 158 QEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSL-----------VEVRQANEAHN 206
I ++ + IN+KR L + + ++ KKL + + E+ NE N
Sbjct: 1899 DFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQAN 1958
Query: 207 KDIADL--ETQLADVRKRKAEYERQSIPG-RDINLESAQDVEIN-KKRPSLIKSKERVSH 262
+ + + + Q A+++++ A + + + +K +E V
Sbjct: 1959 QKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQ 2018
Query: 263 IQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQ 308
++ K E+ A K IA + + A + + + + +
Sbjct: 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTE 2064
Score = 34.5 bits (79), Expect = 0.28
Identities = 24/190 (12%), Positives = 54/190 (28%), Gaps = 35/190 (18%)
Query: 40 LKDDYERLKAEMIQAEEETN----------MSYLKKKGVVAERKEAKIEKDEAEKYQRIR 89
L+ + E+ E+ N + K+ E + +++ E +
Sbjct: 1939 LQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARE-LQVQLDVRNKEIAVQ-- 1995
Query: 90 EEIVAKEVEHQLFKLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGAL 149
+ L K + E+ EN E K +Q +
Sbjct: 1996 ----KVKAYADLEKAE------------------PTGPLREEVEQLENAANELKLKQDEI 2033
Query: 150 NRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDI 209
+ +++ I E + K S ++ K+ + L + +
Sbjct: 2034 VATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQS 2093
Query: 210 ADLETQLADV 219
+ TQ++ V
Sbjct: 2094 ENFNTQMSTV 2103
Score = 29.5 bits (66), Expect = 7.7
Identities = 12/97 (12%), Positives = 33/97 (34%), Gaps = 16/97 (16%)
Query: 368 QNEIKKKRHEMEEAQKRI----DKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQEL 423
I +KR ++EE Q + KL + ++L + +
Sbjct: 1905 VLLINEKRDQLEEEQLHLNIGLKKLR------DTE-----AQVKDLQVSLAQKNRELDVK 1953
Query: 424 QKELEQVIEELGDAKTDKHEDTRRKKKQELVENFKKA 460
++ Q ++++ E ++ ++ V+ +
Sbjct: 1954 NEQANQKLKQMV-QDQQAAEIKQKDARELQVQLDVRN 1989
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 45.2 bits (107), Expect = 2e-04
Identities = 45/388 (11%), Positives = 111/388 (28%), Gaps = 59/388 (15%)
Query: 38 GALKDDYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEV 97
+ ++ + +EE Y + + E + + EE+V +
Sbjct: 138 KGAILNGVPVEKRQLLTDEE----YRELRYGKQETYPLPPG---VDALVKDGEEVVKGQE 190
Query: 98 EHQLFKLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAK-V 156
+ + + + + E+ R A + +E K L +
Sbjct: 191 LAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYL 250
Query: 157 DQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKD-IADLETQ 215
+ E VE+ + R V +A+ +
Sbjct: 251 FRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEKGQPLAEAKGL 310
Query: 216 LADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPS------LIKSKERVSHIQKKLAS 269
L R+ +A G + L + K ++ RV K +A+
Sbjct: 311 LRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVAA 370
Query: 270 AKKSLVEVRQA----NEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMT-- 323
+ +A + I ++ ++ + D+ + ++
Sbjct: 371 IDPEEEVIAEAEGVVHLHEPASILVVKARVYPFEDDVEVSTGDRVAPGDVLADGGKVKSD 430
Query: 324 --------EYTNLK-------------AEATKRAGKILQQLDTINREQKGDQDKLDNELR 362
N+ AEA + ++L++LD + L+ EL
Sbjct: 431 VYGRVEVDLVRNVVRVVESYDIDARMGAEAIQ---QLLKELDL---------EALEKELL 478
Query: 363 QQVQTQNEIKKKRHEMEEAQKRIDKLED 390
++++ + ++ + A+KR++ +
Sbjct: 479 EEMKHPSRARRAK-----ARKRLEVVRA 501
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.9 bits (97), Expect = 2e-04
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 677 KSQIAKLEAEIDALNARADATEPKIKAIEASM 708
K + KL+A +L AD + P + AI+A+M
Sbjct: 19 KQALKKLQA---SLKLYADDSAPAL-AIKATM 46
Score = 29.1 bits (64), Expect = 3.9
Identities = 5/29 (17%), Positives = 17/29 (58%), Gaps = 8/29 (27%)
Query: 888 KSIQEMTSRLQTIQAPN------LRA-ME 909
++++++ + L+ + A + ++A ME
Sbjct: 20 QALKKLQASLK-LYADDSAPALAIKATME 47
Score = 28.4 bits (62), Expect = 7.8
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 10/37 (27%)
Query: 286 KDIADLETQLADVRKRKAEYERQSIPGRDINLESAQM 322
+ + L+ L K Y S P I A M
Sbjct: 20 QALKKLQASL----KL---YADDSAPALAIK---ATM 46
Score = 28.4 bits (62), Expect = 7.9
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 11/39 (28%)
Query: 207 KDIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVE 245
+ + L+ L K Y S P I A +E
Sbjct: 20 QALKKLQASL----KL---YADDSAPALAIK---AT-ME 47
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 42.1 bits (99), Expect = 8e-04
Identities = 73/372 (19%), Positives = 123/372 (33%), Gaps = 58/372 (15%)
Query: 1 MSPILQYIEVDNFKSYKGK---FSIGPLKKFTAVIGPNGSG----------ALKDDYERL 47
MS IL+ I ++NFKS+ F K A+IG NGSG AL
Sbjct: 1 MSMILKEIRMNNFKSHVNSRIKFE----KGIVAIIGENGSGKSSIFEAVFFALFGAGSNF 56
Query: 48 KAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHN 107
+ I ++ KK V E E + Y+ IRE + KLY N
Sbjct: 57 NYDTI-------ITKGKKSVYV----ELDFEVNG-NNYKIIREYDSGRGG----AKLYKN 100
Query: 108 ETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREM---- 163
++K E+ ++R ++ QG + + L+ E E
Sbjct: 101 GKPYATTISAVNKAVNEILGVDRNMFLNSIYIK-----QGEIAKFLSLKPSEKLETVAKL 155
Query: 164 -DVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKR 222
++ +K K E V +K+L + L ++ +A K++++LE + + K
Sbjct: 156 LGIDEFEKC--YQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNLEKEKEKLTKF 213
Query: 223 KAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHI--QKKLASAKKSLVEVRQA 280
++ R Q K P + K EVR
Sbjct: 214 VEYLDKVR---RIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVH 270
Query: 281 NEAHNKDIADL---ETQLADVRKRKAEYERQSIPGRDINLESAQMTEYT-NLKAEATKRA 336
I +L E + R A +E + E T L +
Sbjct: 271 APNGVLTIDNLSGGEQIAVALSLRLAIANALI----GNRVECIILDEPTVYLDENRRAKL 326
Query: 337 GKILQQLDTINR 348
+I +++ +I +
Sbjct: 327 AEIFRKVKSIPQ 338
Score = 36.4 bits (84), Expect = 0.051
Identities = 39/220 (17%), Positives = 68/220 (30%), Gaps = 21/220 (9%)
Query: 853 LEMKKSERHDIL-----------MNCKMNDIVLPMLRVQKYDRKLAKSIQEMTSRLQTIQ 901
L +K SE+ + + KM +IV + + +E
Sbjct: 141 LSLKPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEM 200
Query: 902 APNLRAMEKLEHAKENLMKTNEEFENARKRAKKAKANFDRIKKERYDKFTRC-------- 953
+ + EKL E L K F +A + I+K + F+
Sbjct: 201 SNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVE 260
Query: 954 FEHVSNEIDGAGSESVLPRPFLGPENPEEPLTYRVSTTIVSHRYHPAPFFVLDEIDAALD 1013
A + + G E L+ R++ + +LDE LD
Sbjct: 261 LTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIG-NRVECIILDEPTVYLD 319
Query: 1014 NTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053
K+A K + Q I+I+ E AD ++ +
Sbjct: 320 ENRRAKLAEIF-RKVKSIPQMIIITHHRELEDVADVIINV 358
Score = 31.0 bits (70), Expect = 2.1
Identities = 16/106 (15%), Positives = 41/106 (38%)
Query: 354 QDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDV 413
Q ++ L + + E K ++E +K K+ + +++ E L+ + +
Sbjct: 134 QGEIAKFLSLKPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESL 193
Query: 414 GSSKNRVQELQKELEQVIEELGDAKTDKHEDTRRKKKQELVENFKK 459
+ + L+KE E++ + + + R + L E +
Sbjct: 194 KARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVP 239
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA
complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Length = 438
Score = 41.5 bits (97), Expect = 0.001
Identities = 37/211 (17%), Positives = 84/211 (39%), Gaps = 8/211 (3%)
Query: 66 KGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDIKELEDELDKKKGEV 125
K +++K AK ++ E ++ + E + E L L + ++ E EL+ +
Sbjct: 2 KKSKSKKKAAKAQEVEVKEPVKEPEPLPELEAAEDLQDLPEPDPELLASEPELEDLADPL 61
Query: 126 EKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQ 185
+ + ++E+ L+ +R+ EI + + + E +
Sbjct: 62 DLEGPLEADLLPEEGLLEEEEEELSLPKVSTSDPVRQYLHEIGQVP---LLTLEEEIDLA 118
Query: 186 KKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVE 245
+K+ +++ ++ +A + I ++ K Q IPG + E
Sbjct: 119 RKVEEGMEAIKKLSEATGLDQELIREVVR-----AKILGTARIQKIPGLKEKPDPKTVEE 173
Query: 246 INKKRPSLIKSKERVSHIQKKLASAKKSLVE 276
++ K SL K +R HI ++ +A++ L+E
Sbjct: 174 VDGKLKSLPKELKRYLHIAREGEAARQHLIE 204
Score = 36.9 bits (85), Expect = 0.036
Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 7/166 (4%)
Query: 39 ALKDDYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIV----- 93
L + L A + E+ + L+ E + ++E E+ +
Sbjct: 39 DLPEPDPELLASEPELEDLADPLDLEGPLEADLLPEEGLLEEEEEELSLPKVSTSDPVRQ 98
Query: 94 -AKEVEHQLFKLYHNETDI-KELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNR 151
E+ E D+ +++E+ ++ K E +E ++R K + +
Sbjct: 99 YLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQK 158
Query: 152 ELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVE 197
++ + E++ K SL K +R HI ++ +A++ L+E
Sbjct: 159 IPGLKEKPDPKTVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIE 204
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 40.5 bits (94), Expect = 0.002
Identities = 19/133 (14%), Positives = 56/133 (42%), Gaps = 2/133 (1%)
Query: 95 KEVEHQLFKLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILRE--KKKEQGALNRE 152
+ E + + + E + L+ ++ K + ++ + + + E ++E +LN E
Sbjct: 39 NDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIE 98
Query: 153 LAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADL 212
+ + + EI + + + E+ ++K++ +K +E+ E K+I +
Sbjct: 99 EDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKET 158
Query: 213 ETQLADVRKRKAE 225
+ + ++ E
Sbjct: 159 QQIIFKKKEDLVE 171
Score = 37.8 bits (87), Expect = 0.013
Identities = 29/153 (18%), Positives = 74/153 (48%), Gaps = 2/153 (1%)
Query: 100 QLFKLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQE 159
QL ++ H + +I LE + +K+ +++K KE + ++E+ AL +++K +Q
Sbjct: 9 QLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQT 68
Query: 160 IREMDVEINK--KRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLA 217
+++ + +I K+ S IKS+ + + + AK+ + + E +I +
Sbjct: 69 LQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQE 128
Query: 218 DVRKRKAEYERQSIPGRDINLESAQDVEINKKR 250
D++K E E+ ++ + ++++ ++
Sbjct: 129 DLKKEMLELEKLALELESLVENEVKNIKETQQI 161
Score = 35.1 bits (80), Expect = 0.085
Identities = 24/155 (15%), Positives = 58/155 (37%), Gaps = 3/155 (1%)
Query: 39 ALKDDYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVE 98
A L+ E + + + +S ++ K A I+K +E + E +
Sbjct: 43 AKNKAILNLEEEKLALKLQ--VSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEED 100
Query: 99 HQLFKLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQ 158
+ +I+ L++E+ +K + E +++ + E + E + + + + Q
Sbjct: 101 IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQ 160
Query: 159 EIREM-DVEINKKRPSLIKSKERVSHIQKKLASAK 192
I + + + K P + ER+ K +
Sbjct: 161 IIFKKKEDLVEKTEPKIYSFYERIRRWAKNTSIVT 195
Score = 31.2 bits (70), Expect = 1.4
Identities = 11/88 (12%), Positives = 37/88 (42%)
Query: 366 QTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQK 425
EI + E +K +DK + ++ + ++ K L V ++ +Q+
Sbjct: 15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNA 74
Query: 426 ELEQVIEELGDAKTDKHEDTRRKKKQEL 453
++ + +++ + K+++ + ++
Sbjct: 75 KIASIQKKMSEIKSERELRSLNIEEDIA 102
Score = 30.9 bits (69), Expect = 2.0
Identities = 13/115 (11%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Query: 331 EATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLED 390
+ + LD +++ + N +++ + ++ K +++ +I ++
Sbjct: 22 SLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQK 81
Query: 391 HIRQNEAS--LKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEELGDAKTDKHE 443
+ + ++ L+ ++ + ++ LQ E+++ E+ D K + E
Sbjct: 82 KMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLE 136
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 40.0 bits (94), Expect = 0.004
Identities = 22/162 (13%), Positives = 45/162 (27%), Gaps = 6/162 (3%)
Query: 298 VRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATKRAGKILQQLDTINREQKGDQDKL 357
+ K + + P E + K KR + T N L
Sbjct: 805 MNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDS-TWSAL 863
Query: 358 DNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSK 417
+ ++ + K++ ++ ++ +++ + + E G S
Sbjct: 864 EKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNET-----GDSI 918
Query: 418 NRVQELQKELEQVIEELGDAKTDKHEDTRRKKKQELVENFKK 459
VQ K LE E + + D Q N+
Sbjct: 919 TAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNG 960
Score = 34.6 bits (80), Expect = 0.19
Identities = 8/114 (7%), Positives = 32/114 (28%), Gaps = 8/114 (7%)
Query: 39 ALKDDYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVE 98
L++ + E +++ ++ K E + + + E + + + ++
Sbjct: 897 KLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSIL--AQLT 954
Query: 99 HQLFKLYHNETD------IKELEDELDKKKGEVEKIERRKEKAENILREKKKEQ 146
+ T+ ++ + + E+ + I
Sbjct: 955 ELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHH 1008
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 40.2 bits (94), Expect = 0.005
Identities = 30/134 (22%), Positives = 47/134 (35%), Gaps = 37/134 (27%)
Query: 32 IGPNGSGALKDDYERLKAEMIQAEEET---------NMSYLK----------KKG-VVAE 71
+GP GS R + EM E + M ++ G V ++
Sbjct: 828 VGPWGSA-------RTRWEMEAFGEFSLEGCVEMAWIMGFISYHNGNLKGRPYTGWVDSK 880
Query: 72 RKEAKIEKDEAEKYQRIREEIVAK----EVEHQLFKLYHNETDIKELEDELDKKKGEVEK 127
KE +KD KY I+ +E +LF Y+ E E +++ +E
Sbjct: 881 TKEPVDDKDVKAKY---ETSILEHSGIRLIEPELFNGYNPEKKEMIQEVIVEED---LEP 934
Query: 128 IERRKEKAENILRE 141
E KE AE +
Sbjct: 935 FEASKETAEQFKHQ 948
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 38.5 bits (89), Expect = 0.009
Identities = 29/254 (11%), Positives = 74/254 (29%), Gaps = 21/254 (8%)
Query: 800 EADKLENMRATRLTKKQAVDAMDEEIGKARREVGSIAKDIQAAQKSCVNLESKLEMKKSE 859
+ R K + + I ++ + A +++ LE ++
Sbjct: 94 SGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILESDEAR 153
Query: 860 RHDILMNCKMNDIVLPMLRVQKYDRKLAKSIQEMTSRLQTIQAPNLRAMEKLEHAKENLM 919
+ ++ ++ + + + + + A+ K+ +
Sbjct: 154 EKVVREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIF 213
Query: 920 KTNEEFENARKRAKKAKANFDRIKKERYDKFTRCFEHVSNEIDGAGSESVLPRPFLGPEN 979
E + + + + ++ R +S G E
Sbjct: 214 AEFTEGKYSEVVVRAEENKVRLFVV--WEGKERPLTFLS-----------------GGER 254
Query: 980 PEEPLTYRVSTTIVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISL 1039
L +R++ + + +LDE LD K+ + + + Q I++S
Sbjct: 255 IALGLAFRLA--MSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 312
Query: 1040 KEEFFSHADSLVGI 1053
EE AD ++ I
Sbjct: 313 DEELKDAADHVIRI 326
Score = 36.2 bits (83), Expect = 0.048
Identities = 35/256 (13%), Positives = 75/256 (29%), Gaps = 26/256 (10%)
Query: 4 ILQYIEVDNFKSYKG---KFSIGPLKKFTAVIGPNGSG----------AL---KDDYERL 47
L+ + V NF+S+ +F G +IG NGSG L +
Sbjct: 2 KLERVTVKNFRSHSDTVVEFKEG----INLIIGQNGSGKSSLLDAILVGLYWPLRIKDIK 57
Query: 48 KAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHN 107
K E + L + + +I + + Y + + V ++ +
Sbjct: 58 KDEFTKVGARDTYIDLI---FEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEP 114
Query: 108 -ETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVE 166
I ++L + I R+ + + IL + + + L E +
Sbjct: 115 SSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLS 174
Query: 167 INKKRPSLIKS--KERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKA 224
K + ++ + +A + E+ A + E + +
Sbjct: 175 ELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVR 234
Query: 225 EYERQSIPGRDINLES 240
+ R + S
Sbjct: 235 LFVVWEGKERPLTFLS 250
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 38.2 bits (89), Expect = 0.009
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 379 EEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKEL----EQVIEEL 434
+ QK + K+ + +R E + +EL+ ++ V LQ++L +
Sbjct: 1 DSGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPC 60
Query: 435 GDAKTDKHEDTRRKKKQELVENFKKAYSGVY 465
D +K K Q++V+N K SG+Y
Sbjct: 61 QDTTANKISPITGKDCQQVVDNGGKD-SGLY 90
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 37.2 bits (85), Expect = 0.030
Identities = 31/296 (10%), Positives = 93/296 (31%), Gaps = 19/296 (6%)
Query: 130 RRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKK-RPSLIKSKERVSHIQKKL 188
R+ K + I ++ K Q + + +E ++++ ++ + ++R+ +Q+++
Sbjct: 292 MRRRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEM 351
Query: 189 ASAKKSLVEVRQANE--AHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVEI 246
++ +L+E + + + R+ + + Q + + +
Sbjct: 352 ERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLE 411
Query: 247 NKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYE 306
++ R + ++ K + ++ EV A ++ A L AE
Sbjct: 412 DEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERA 471
Query: 307 RQSIPGRDINLESAQMTEYTNLKAEATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQ 366
+ + ++ L + + +
Sbjct: 472 DTDPDHDNASDAGSESGGG----------------DLARGPDDLVDPVADRRTLAERNER 515
Query: 367 TQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQE 422
N++K + ++ + + E + K K G++K RV +
Sbjct: 516 LHNQLKALKQDLARSCDETKETAMDKIHRENVRQGRDKYKTLREIRKGNTKRRVDQ 571
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 37.3 bits (87), Expect = 0.033
Identities = 23/170 (13%), Positives = 44/170 (25%), Gaps = 9/170 (5%)
Query: 771 RWERAVSDDEEELARAQGAEE--KLAGEMRAEADKLENMRATRLTKKQAVDAMDEEIGKA 828
+ VS+ E Q K + + +T ++A E +
Sbjct: 810 PKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIE 869
Query: 829 RREVGSIAKDIQAAQKSCVNLESKLEMKKSERHDILMNCKMNDIVLPMLRVQKYDRKLAK 888
+ IA +Q + LE+ K + VQ + L
Sbjct: 870 LKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSIT-------AVQAKLKNLEA 922
Query: 889 SIQEMTSRLQTIQAPNLRAMEKLEHAKENLMKTNEEFENARKRAKKAKAN 938
E S + L + +L N + E ++ +
Sbjct: 923 FDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVK 972
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial
promoter opening, G-quartet, quadruplex, DNA binding;
2.10A {Thermus aquaticus} PDB: 3ugp_A 1ku2_A 3lev_A*
3les_A*
Length = 245
Score = 36.0 bits (83), Expect = 0.044
Identities = 17/86 (19%), Positives = 40/86 (46%)
Query: 112 KELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKR 171
+++E+ ++ K E +E ++R K + + ++ + E++ K
Sbjct: 32 RKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVEEVDGKL 91
Query: 172 PSLIKSKERVSHIQKKLASAKKSLVE 197
SL K +R HI ++ +A++ L+E
Sbjct: 92 KSLPKELKRYLHIAREGEAARQHLIE 117
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.1 bits (80), Expect = 0.065
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 18/94 (19%)
Query: 74 EAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDIKELEDELDKKKGEVEKIERRKE 133
+A E E ++ REE ++EL D K + + + +K+
Sbjct: 76 QADRLTQEPESIRKWREE---------------QRKRLQEL-DAASKVMEQEWREKAKKD 119
Query: 134 KAE-NILREKKKEQG-ALNRELAKVDQEIREMDV 165
E N + ++ E+ NR K + + D+
Sbjct: 120 LEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
Score = 33.2 bits (75), Expect = 0.23
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 743 RQYEEAE-LRSQQERQKI-CQDKD--TKKNVARW-ERAVSDDEEELARAQGAEEKLAGEM 797
R +E E +R +E Q+ Q+ D +K W E+A D EE R EK
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
Query: 798 RAEADKL 804
R
Sbjct: 139 RIADKAF 145
Score = 32.8 bits (74), Expect = 0.34
Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 37/114 (32%)
Query: 48 KAEMIQAEEETNMSYLKKKGVVAERKEAKI-EKDEAEKYQRIREEIVAKEVEHQLFKLYH 106
+A+ + E E+ ++K E + ++ E D A K AK
Sbjct: 76 QADRLTQEPES----IRKW---REEQRKRLQELDAASKVMEQEWREKAK----------- 117
Query: 107 NETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEI 160
K+LE+ ++ E++E K K N R K + D +I
Sbjct: 118 -----KDLEEWNQRQS---EQVE--KNKINN--RIADKA------FYQQPDADI 153
Score = 32.4 bits (73), Expect = 0.44
Identities = 11/71 (15%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 348 REQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRID----KLEDHIRQNEASLKDN- 402
R+ + +Q K R Q ++ E+A+K ++ + + + +N+ + +
Sbjct: 88 RKWREEQRK-----RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Query: 403 KKLKEELNSDV 413
K ++ ++D+
Sbjct: 143 KAFYQQPDADI 153
Score = 32.1 bits (72), Expect = 0.65
Identities = 11/79 (13%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 43 DYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIE---KDEAEKYQRIREEIVAKEVEH 99
D + E I+ E L++ ++ E + K + E++ + + E V K +
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137
Query: 100 QLFKLYHNETDIKELEDEL 118
++ ++ + ++
Sbjct: 138 N---RIADKAFYQQPDADI 153
Score = 30.5 bits (68), Expect = 2.3
Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 21/91 (23%)
Query: 366 QTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQK 425
+ E + R EE +KR+ +L+ AS K +++E ++ +K
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELD------AAS----KVMEQEW----------REKAKK 118
Query: 426 ELEQVIEELGDAKTDKHEDTRRKKKQELVEN 456
+LE+ + + +K++ R + +
Sbjct: 119 DLEEWNQRQ-SEQVEKNKINNRIADKAFYQQ 148
Score = 29.7 bits (66), Expect = 3.3
Identities = 10/43 (23%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 420 VQELQKELEQVIEELGDAKTDKHEDTRRKKKQELVENFKKAYS 462
+++ ++E + ++EL A ++ R K K++L E + + S
Sbjct: 87 IRKWREEQRKRLQELDAASKVMEQEWREKAKKDL-EEWNQRQS 128
Score = 28.6 bits (63), Expect = 7.4
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 117 ELDKKKGEVEKI-ERRKEKAENI--LREKKKEQGALNRELAKVDQEIREMDVEINKKRPS 173
+ D+ E E I + R+E+ + + L K RE AK +++ E + +++
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAK--KDLEEWNQRQSEQ--- 130
Query: 174 LIKSKER 180
+ K+K
Sbjct: 131 VEKNKIN 137
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 36.2 bits (84), Expect = 0.067
Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 5/106 (4%)
Query: 610 SLDLARKAKRWDDKEMGNLKAQKEKLSEELREAMKKSRKESELNTVQSTIKGLEIRLNYS 669
D + + K S+ + KK KE++ +T + + E N +
Sbjct: 41 EADKKWRRTQ---FLTEASKKLINICSKAV--GAKKKAKEADGDTSEIPPQVKEAYENGT 95
Query: 670 RQDLQNTKSQIAKLEAEIDALNARADATEPKIKAIEASMTARGDTI 715
+ Q + + +L+ L+ + + + +E +
Sbjct: 96 LKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNV 141
>3kta_A Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xex_A* 1xew_X*
Length = 182
Score = 34.9 bits (81), Expect = 0.072
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 5 LQYIEVDNFKSYKGKFSIGPLKK-FTAVIGPNGSG 38
++ +E+ FKSY K + P K FTA++G NGSG
Sbjct: 4 IEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSG 38
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Length = 250
Score = 35.1 bits (80), Expect = 0.078
Identities = 12/112 (10%), Positives = 42/112 (37%)
Query: 327 NLKAEATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRID 386
++ KR + L + ++ ++ L Q + +++++ +EA +++
Sbjct: 113 DILCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLE 172
Query: 387 KLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEELGDAK 438
+LE + ++ + +L V + + ++ + A+
Sbjct: 173 RLEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWEYECEPGMVKGIHHGPSVAQ 224
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 35.4 bits (81), Expect = 0.088
Identities = 33/287 (11%), Positives = 112/287 (39%), Gaps = 8/287 (2%)
Query: 148 ALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNK 207
A+ +++ + + ++ +++R ++ +L S +K L + +++
Sbjct: 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSE 62
Query: 208 DIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKL 267
+ D + +L K+ + E ++++ + + L + +++ +K
Sbjct: 63 ALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELD--RAQERLATALQKLEEAEKAA 120
Query: 268 ASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTN 327
+++ + + + + + E QL + + + +R+ + ++ +
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRK------YEEVARKLVIIES 174
Query: 328 LKAEATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDK 387
A +RA + + E K + L + Q + + K E++ ++ +
Sbjct: 175 DLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKE 234
Query: 388 LEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEEL 434
E E S+ +K ++L ++ + K + + + +EL+ + ++
Sbjct: 235 AETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281
Score = 34.6 bits (79), Expect = 0.13
Identities = 40/279 (14%), Positives = 113/279 (40%), Gaps = 8/279 (2%)
Query: 95 KEVEHQLFKLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELA 154
+ E+ L + E D K ED + + E+ ++++ + E+ L + + +L
Sbjct: 13 LDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLE 72
Query: 155 KVDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLET 214
+++ + + ++ + +E + Q++LA+A + L E +A + + + +E+
Sbjct: 73 LAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIES 132
Query: 215 QLADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAKKSL 274
+ ++ E Q + I ++ D + + L+ + + +++ ++
Sbjct: 133 RAQKDEEKMEIQEIQLKEAKHIAEDA--DRKYEEVARKLVIIESDLERAEERAELSEGKC 190
Query: 275 VEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATK 334
E+ + + ++ LE Q +++ +YE + I + S ++ E A +
Sbjct: 191 AELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEE------IKVLSDKLKEAETRAEFAER 244
Query: 335 RAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKK 373
K+ + +D + E + K + N++
Sbjct: 245 SVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283
Score = 33.9 bits (77), Expect = 0.26
Identities = 43/275 (15%), Positives = 100/275 (36%), Gaps = 9/275 (3%)
Query: 39 ALKDDYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVE 98
A+K + LK + A + + + KK K+ + E +K + E+ E++
Sbjct: 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATED----ELD 58
Query: 99 HQLFKLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQ 158
L + ++ E + + +V + RR + E L ++ ++L + ++
Sbjct: 59 KYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEK 118
Query: 159 EIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLAD 218
E + + K +E++ + +L AK + + E + + +E+ L
Sbjct: 119 AADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLER 178
Query: 219 VRKRKAEYERQSIPGRDINLESAQDVE-----INKKRPSLIKSKERVSHIQKKLASAKKS 273
+R E + + +++ K K +E + + KL A+
Sbjct: 179 AEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETR 238
Query: 274 LVEVRQANEAHNKDIADLETQLADVRKRKAEYERQ 308
++ K I DLE +L + + +
Sbjct: 239 AEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEE 273
Score = 29.6 bits (66), Expect = 4.8
Identities = 32/199 (16%), Positives = 75/199 (37%), Gaps = 1/199 (0%)
Query: 255 KSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRD 314
K E + Q+KL A+K + + N+ I E +L ++R A ++
Sbjct: 59 KYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEK 118
Query: 315 INLES-AQMTEYTNLKAEATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKK 373
ES M + + ++ QL + K + R+ V ++++++
Sbjct: 119 AADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLER 178
Query: 374 KRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEE 433
E ++ + +LE+ I+ +LK + E+ + + ++ L +L++
Sbjct: 179 AEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETR 238
Query: 434 LGDAKTDKHEDTRRKKKQE 452
A+ + + E
Sbjct: 239 AEFAERSVTKLEKSIDDLE 257
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 35.7 bits (81), Expect = 0.098
Identities = 41/383 (10%), Positives = 111/383 (28%), Gaps = 33/383 (8%)
Query: 68 VVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDIKELEDELDKKKGEVEK 127
+ ER A++ + A E D+ EL+ +D + E K
Sbjct: 323 LTRERAIAELRQVRTLARLACNHTREAVARRIP-----LLEQDVNELKKRIDSVEPEFNK 377
Query: 128 IERRKEKAENILREKKKEQGALNRELAK--VDQEIREMDVEINKKRPSLIKSKERVSHIQ 185
+ +++ + + + Q E + V + + + +P L S +
Sbjct: 378 LTGIRDEFQKEIINTRDTQARTISESFRSYVLNLGNTFENDFLRYQPELNLFDFLSSGKR 437
Query: 186 KKLASAKKSLVE-------------VRQANEAHNKDIADLETQLADVRKRKAEYERQSIP 232
+ +A + E + A K+++ +Q + + + +
Sbjct: 438 EAFNAALQKAFEQYITDKSAAWTLTAEKDINAAFKELSRSASQYGASYNQITDQITEKLT 497
Query: 233 GRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNK-DIADL 291
G+D+ + + E + + +S + LA + N N + +
Sbjct: 498 GKDVKVHTTTTAEEDNSPGWAKWAMGLLSLSKGNLAGFALAGAGFDWKNILLNYFTVIGI 557
Query: 292 ETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATKRAGKILQQLDTINREQK 351
+ V ++ G + A +K + + Q ++
Sbjct: 558 GGIITAVTGILLGPIGFALLGLGVGFLQADQARRELVKTAKKELVKHLPQVAHEQSQVVY 617
Query: 352 GDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNS 411
+ + ++V + I + + + + +E +
Sbjct: 618 NAVKECFDSYEREVS------------KRINDDIVSRKSELDNLVKQKQTREINRESEFN 665
Query: 412 DVGSSKNRVQELQKELEQVIEEL 434
+ + + V +++E L
Sbjct: 666 RLKNLQEDVIAQLQKIEAAYSNL 688
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 35.7 bits (81), Expect = 0.10
Identities = 30/234 (12%), Positives = 77/234 (32%), Gaps = 7/234 (2%)
Query: 212 LETQLADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAK 271
L+ R+ + R S D + ++ KKR K + S +
Sbjct: 354 LDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQV 413
Query: 272 KSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPG------RDINLESAQMTEY 325
+ + ++ K +Y + G L+S +
Sbjct: 414 IFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTD 473
Query: 326 TNLKAEATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRI 385
L+ + T + +++ + E K+ +E++++ + E K++ ++ Q
Sbjct: 474 AILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTE 533
Query: 386 DKLEDHIRQ-NEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEELGDAK 438
D ++ E KL+E+ + + ++ E++ + ++ K
Sbjct: 534 KMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRK 587
Score = 29.2 bits (64), Expect = 8.2
Identities = 26/137 (18%), Positives = 60/137 (43%), Gaps = 8/137 (5%)
Query: 45 ERLKAEMIQAEEETNMSYLKKKGVVAER-KEAKIEKDEAEKYQRIREEIVAKEVEHQLFK 103
E + ++++E + L+ + E+ KE ++E+ +AE Q + + + +++
Sbjct: 458 EEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNE--- 514
Query: 104 LYHNETDIKELEDELDKKKGEVEK-IERRKEKAENILREKKKEQGALNRELAKVDQEIRE 162
E + ++ L + ++E + ++ E L K +EQ L +E +E R
Sbjct: 515 -QMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKE--GFQKESRI 571
Query: 163 MDVEINKKRPSLIKSKE 179
M EI + + + K
Sbjct: 572 MKNEIQDLQTKMRRRKA 588
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 35.6 bits (82), Expect = 0.10
Identities = 26/186 (13%), Positives = 60/186 (32%), Gaps = 17/186 (9%)
Query: 63 LKKKGVVAERKEAKIEK----DEAEKYQRIREEIVAKE--VEHQLFKLYHNETDIKELED 116
L+ G V E + + E E+ A+E E ++F+ E +
Sbjct: 44 LQALGEVIEAELRSTKHWELTAEGEEI--------AREGSHEARVFRSIPPEG--LAQSE 93
Query: 117 ELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIK 176
+ G+V + K + + + + R + ++ E++ + + +
Sbjct: 94 LMRLPSGKVGFSKAMSNKWIRV-DKSAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLG 152
Query: 177 SKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDI 236
KER ++KL + A + I+ ET+L+ + + +
Sbjct: 153 EKERSELRKRKLLAEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNF 212
Query: 237 NLESAQ 242
Sbjct: 213 LAHGVL 218
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation,
ribosome inhibitor, hydrolase; HET: CIT; 2.30A
{Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB:
1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Length = 551
Score = 35.4 bits (80), Expect = 0.11
Identities = 32/222 (14%), Positives = 59/222 (26%), Gaps = 52/222 (23%)
Query: 780 EEELARAQGAEEKLAGEMRAEADKLENMRATRLTKKQAVDAMDEEIGKARREVGSIAKDI 839
++ + E + A E RA + V E KA + S ++
Sbjct: 299 RQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSEL 358
Query: 840 QAAQKSCVNLESKLEMKKSERHDILMNCKMNDIVLPMLRVQKYDRKLAKSIQEMTSRLQT 899
AA K+ + ++++ HD PM + + Q
Sbjct: 359 DAANKTLADAIAEIKQFNRFAHD------------PMAGGHRMWQMAGLKAQ-------- 398
Query: 900 IQAPNLRAMEKLEHAKENLMKTNEEFENARKRAKKAKANFDRIKKERYDKFTRCFEHVSN 959
RA + + + +E +A A + + + ++
Sbjct: 399 ------RAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRSA---------- 442
Query: 960 EIDGAGSESVLPRPFLGPENPEEPLTYRVSTTIVSHRYHPAP 1001
+ E PR H YHPAP
Sbjct: 443 -ENNLNDEKNKPRKGFKDYG---------------HDYHPAP 468
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 131
Score = 33.3 bits (77), Expect = 0.14
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 624 EMGNLKAQKEKLSEELREAMKKSRKESELNTVQSTIKGLEIRLNYSRQDL--QNTKSQI- 680
E+ + + K L L E K R +L +Q I +E +L R ++ QN + +I
Sbjct: 53 ELQSQLSMKASLENSLEET--KGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKIL 110
Query: 681 ----AKLEAEI 687
+LE EI
Sbjct: 111 LDVKTRLEQEI 121
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1
a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F*
2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Length = 423
Score = 34.9 bits (80), Expect = 0.14
Identities = 28/169 (16%), Positives = 60/169 (35%), Gaps = 8/169 (4%)
Query: 108 ETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEI 167
+ D + + + E + ++E+ L +R+ EI
Sbjct: 29 PEFPEGEPDPDLEDPDLALEDDLLDLPEEGEGLDLEEEEEDLPIPKISTSDPVRQYLHEI 88
Query: 168 NKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYE 227
+ P L +E +LA + +E + DL ++ + +
Sbjct: 89 G-QVPLLTLEEEV------ELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARV 141
Query: 228 RQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVE 276
R ++ + EI++K SL K +R HI ++ +A++ L+E
Sbjct: 142 RHIPGLKETLDPKTVE-EIDQKLKSLPKEHKRYLHIAREGEAARQHLIE 189
Score = 32.9 bits (75), Expect = 0.61
Identities = 25/162 (15%), Positives = 60/162 (37%), Gaps = 4/162 (2%)
Query: 40 LKDDYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVA---KE 96
L + E ++ + L E + + E+++ + + V E
Sbjct: 28 LPEFPEGEPDPDLEDPDLALEDDLLDLPEEGEGLDLEEEEEDLPIPKISTSDPVRQYLHE 87
Query: 97 VEHQLFKLYHNETDI-KELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAK 155
+ E ++ +++E+ ++ K E + ++R K +
Sbjct: 88 IGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGL 147
Query: 156 VDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVE 197
+ + EI++K SL K +R HI ++ +A++ L+E
Sbjct: 148 KETLDPKTVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIE 189
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 34.9 bits (79), Expect = 0.17
Identities = 46/409 (11%), Positives = 132/409 (32%), Gaps = 20/409 (4%)
Query: 52 IQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDI 111
+Q + E Y +K +++ ++E + ++R + + +
Sbjct: 46 MQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAW 105
Query: 112 KELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKR 171
+ LE + + RR E+ E++ + +++ +Q + + D E
Sbjct: 106 QRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLT 165
Query: 172 PSLIKSKERVSHIQKKLASAKKSLVEVRQA----NEAHNKDIADLETQLADVRKR----- 222
+ + + LA+ + + ++ NE D ++ + + +
Sbjct: 166 EVRALLR-KHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLG 224
Query: 223 -KAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASA--KKSLVEVRQ 279
+ R+++ + LE+ + + + + + L S+ E++
Sbjct: 225 TLTQKRREALERMEKLLETIDQLHLEFAK-RAAPFNNWMEGAMEDLQDMFIVHSIEEIQS 283
Query: 280 ANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATKRAGKI 339
AH + A L + + A + N+ + Y+ + + +
Sbjct: 284 LITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDK 343
Query: 340 LQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASL 399
++QL I + L EL +Q + ++ + I + I ++ +
Sbjct: 344 VKQLVPIRDQS------LQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQI 397
Query: 400 KDNKKLKEELNSDVGSSKNRVQELQKELEQVIEELGDAKTDKHEDTRRK 448
+ + + + +LE + + +A ++ T
Sbjct: 398 TGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYT 446
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 34.8 bits (79), Expect = 0.17
Identities = 22/229 (9%), Positives = 65/229 (28%), Gaps = 5/229 (2%)
Query: 632 KEKLSEELREAMKKSRKESELNTVQSTIKGLEIRLNYSRQDLQNTKSQIAKLEAEIDALN 691
+ + +R A+ + + + + + + L + + +E
Sbjct: 592 HKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPV--DQR 649
Query: 692 ARADATEPKIKAIEASMTARGDTISRKKEEMNSVEDIVFRDFCKSIGVSTIRQYEEAELR 751
R AIE + ++ + + + + +E
Sbjct: 650 TRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLEL 709
Query: 752 SQQERQKICQDKDTKKNVARWERAVSDDEEELARAQGAEEKLAGEMRAEADKLENMRATR 811
+ +R E A + E + +A+ + LA E AE ++++ +R
Sbjct: 710 EAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREME 769
Query: 812 LTKKQAVDAMDEEIGKARREVGSIAKDIQAAQKSCVNLESKLEMKKSER 860
L +A ++ + + + + ++ +
Sbjct: 770 LIYARAQLELEVSKAQQLAN---VEAKKFKEMTEALGPGTIRDLAVAGP 815
Score = 34.0 bits (77), Expect = 0.33
Identities = 33/277 (11%), Positives = 80/277 (28%), Gaps = 34/277 (12%)
Query: 166 EINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQAN--EAHNKDIADLETQLADVRKRK 223
+ +K +I+ + + L + R + ++ ++ Q + ++
Sbjct: 590 DFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQR 649
Query: 224 AEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEA 283
Q ++ A ++ N + + +R+ + +K L + E
Sbjct: 650 TRDALQRS------VQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQ--SEAEK 701
Query: 284 HNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATKRAGKILQQL 343
K++ +LE V +E LKA+A + +
Sbjct: 702 ARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELER 761
Query: 344 DTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNK 403
RE + + + Q + E+ K + K+ ++ + +
Sbjct: 762 VKKVREME--------LIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVA 813
Query: 404 KLKEELNSDVGSSKNRVQELQKELEQVIEELGDAKTD 440
E+Q +L Q + TD
Sbjct: 814 G----------------PEMQVKLLQSLGLKSTLITD 834
Score = 31.3 bits (70), Expect = 1.9
Identities = 25/178 (14%), Positives = 61/178 (34%), Gaps = 8/178 (4%)
Query: 42 DDYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQL 101
D R + + ++ E + + E + Q+I ++ A++ +L
Sbjct: 647 DQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKEL 706
Query: 102 FKLYHNETDIKELEDEL--DKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQE 159
+L ++ + + + E +IE + L+ + + ++
Sbjct: 707 LELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIET--EAELERVKK 764
Query: 160 IREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLA 217
+REM++ + + L SK + Q AKK +D+A ++
Sbjct: 765 VREMELIYARAQLELEVSKAQ----QLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQ 818
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 34.4 bits (79), Expect = 0.19
Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 380 EAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEELGDAKT 439
+ + I K E I +++S++ L S+ ++ L++++ Q+ + +
Sbjct: 1 KMLEEIMKYEASILTHDSSIR-------YLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCK 53
Query: 440 DKHEDTRRKKK--QELVENFKKAYSGVY 465
D + K Q++ K SG+Y
Sbjct: 54 DTVQIHDITGKDCQDIANKGAKQ-SGLY 80
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 34.8 bits (81), Expect = 0.19
Identities = 15/96 (15%), Positives = 38/96 (39%), Gaps = 18/96 (18%)
Query: 334 KRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKK----RHEMEEAQK------ 383
+R I ++ + E + + + E R+ ++ E + + R E+E A++
Sbjct: 430 ERLKAIEAEIAKLTEEIAKLRAEWERE-REILRKLREAQHRLDEVRREIELAERQYDLNR 488
Query: 384 -------RIDKLEDHIRQNEASLKDNKKLKEELNSD 412
+ KLE + L+ + ++ E+ +
Sbjct: 489 AAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEE 524
Score = 32.9 bits (76), Expect = 0.70
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 71 ERKEAKIEKDEA--EKYQRIREEIVAKEVE-HQLFKLYHNE----TDIKELEDELDKKKG 123
ER+ K EKD E+ + I EI E +L + E ++E + LD+ +
Sbjct: 416 EREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRR 475
Query: 124 EVEKIERRK--EKAENILREKKKEQGALNRELAKVDQEIREM 163
E+E ER+ +A + + + L E+ + +++R
Sbjct: 476 EIELAERQYDLNRAAELRYGELPK---LEAEVEALSEKLRGA 514
Score = 29.4 bits (67), Expect = 8.3
Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 32/130 (24%)
Query: 117 ELDKKKGEVEKIERRKEKAENILREKKKEQGALNRE--------LAKVDQEIREMDVEIN 168
L+ E++ +ER+ + + E+ AL +E L ++ EI ++ EI
Sbjct: 395 ALESAPEEIDALERK-------KLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIA 447
Query: 169 KKRPSLIKSKERVSHIQKKLASAKKSLVEVR-QANEAHNK------------DIADLETQ 215
K R + +E + +++ + L EVR + A + ++ LE +
Sbjct: 448 KLRAEWEREREILRKLREA----QHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAE 503
Query: 216 LADVRKRKAE 225
+ + ++
Sbjct: 504 VEALSEKLRG 513
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil,
heptad repeat, stutter; 2.3A {Homo sapiens} SCOP:
h.1.20.1
Length = 84
Score = 31.7 bits (73), Expect = 0.20
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 15/74 (20%)
Query: 624 EMGNLKAQKEKLSEELREAMKKSRKESELNTVQSTIKGLEIRLNYSRQDLQ--------- 674
E+ LK E L ++RE + E Q TI L+ + ++++
Sbjct: 2 EVDALKGTNESLERQMREM--EENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDL 59
Query: 675 -NTKSQIAKLEAEI 687
N K L+ EI
Sbjct: 60 LNVK---MALDIEI 70
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 34.3 bits (78), Expect = 0.23
Identities = 22/141 (15%), Positives = 54/141 (38%), Gaps = 19/141 (13%)
Query: 319 SAQMTEYTNLKAEATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEM 378
++ E + + + + + E G+ K + E+RQ + +K+K E+
Sbjct: 300 RCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQR--VKEKEAEL 357
Query: 379 EEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEELGDAK 438
+EA+K + + D + K ++E K ++++ +K L+ + K
Sbjct: 358 KEAEKELHEKFDRL---------KKLHQDE--------KKKLEDKKKSLDDEVNAFKQRK 400
Query: 439 TDKHEDTRRKKKQELVENFKK 459
T + + + K+
Sbjct: 401 TAAELLQSQGSQAGGSQTLKR 421
Score = 33.2 bits (75), Expect = 0.47
Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 45 ERLKAEMIQAEEETNMSYLKKKGVVAERKE--AKIEKDEAEKYQRIREEIVAKEV----- 97
+L+ + + + + ++ A+R E +++K E E Q + + KE
Sbjct: 301 CKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEA 360
Query: 98 EHQLFKLY-----HNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRE 152
E +L + + ++ + K+LED+ EV ++RK AE + + + G+ +
Sbjct: 361 EKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLK 420
Query: 153 LAK 155
K
Sbjct: 421 RDK 423
Score = 32.0 bits (72), Expect = 1.1
Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 12/125 (9%)
Query: 27 KFTAVIGPNGSGALKDDYERLKAEMIQ--AEEETNMSYLKKKGVVAERKEAKIEKDEAEK 84
F + +L++ YE + E + ++E M ++ V KE + E EAEK
Sbjct: 307 GFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEM----RQMFVQRVKEKEAELKEAEK 362
Query: 85 YQRIREEIVAKEVEHQLFKLYHNETDIKELEDE---LDKKKGEVEKIERRKEKAENILRE 141
+ + + K + + KL E K L+DE ++K E ++ + +A
Sbjct: 363 ELHEKFDRLKKLHQDEKKKL---EDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTL 419
Query: 142 KKKEQ 146
K+ ++
Sbjct: 420 KRDKE 424
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 32.5 bits (75), Expect = 0.26
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 15/74 (20%)
Query: 624 EMGNLKAQKEKLSEELREAMKKSRKESELNTVQSTIKGLEIRLNYSRQDLQ--------- 674
E+ N+K Q L + +A + R E L ++ + LE L ++QD+
Sbjct: 51 EIDNVKKQCANLQNAIADA--EQRGELALKDARNKLAELEEALQKAKQDMARLLREYQEL 108
Query: 675 -NTKSQIAKLEAEI 687
NTK L+ EI
Sbjct: 109 MNTK---LALDVEI 119
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 33.7 bits (77), Expect = 0.35
Identities = 44/358 (12%), Positives = 111/358 (31%), Gaps = 38/358 (10%)
Query: 43 DYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLF 102
+ L+ I A ++ K K + E + + +
Sbjct: 704 TFRDLERSTIDA-----ITLFGDKNT-KNVVLEKSYTEYMEGFTDAATGEAKRGFMTVVS 757
Query: 103 KLYHNETDIKELEDELDKKKGEVEKIERRKEKAENIL---------REKKKEQGALNREL 153
+L D +E E +KK + K+ +AENIL + ++ + +
Sbjct: 758 ELEQRFPDPTSIESEKEKK--DFVKLFGEYLRAENILQNYDEFATLKALQQIDLSDPVAV 815
Query: 154 AKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLE 213
K E D + + + + + ++ + + ++A + +
Sbjct: 816 EKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDD 875
Query: 214 TQLADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAKKS 273
+E + ++INL+ I + E + +++ + S+ +
Sbjct: 876 V----------VFEVDLLKSQEINLDYILG-LIFEHNRQNKGKGEMIEEVKRLIRSSLGN 924
Query: 274 LVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEAT 333
+ + + D A + + + R+ E+ + + NL +A
Sbjct: 925 RAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQ-----REQQREAEALIKEENLNEDAA 979
Query: 334 KRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHE-MEEAQKRIDKLED 390
KR + + +L+ L + + K K+ ++ I+K +
Sbjct: 980 KR----YIRTSLKREYATENGTELNETLPKLSPLNPQYKTKKQAVFQKIVSFIEKFKG 1033
Score = 30.3 bits (68), Expect = 4.4
Identities = 27/238 (11%), Positives = 75/238 (31%), Gaps = 13/238 (5%)
Query: 39 ALKDDYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIE----KDEAEKYQRIREEIVA 94
LK + ++ + E+ Y+ + + +D Y IR+
Sbjct: 800 TLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIRDWQRR 859
Query: 95 KEVEHQLFKLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELA 154
++ + K + D+ D L ++ ++ I + + K + + R +
Sbjct: 860 EKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQNKGKGEMIEEVKRLIR 919
Query: 155 KVDQEIREMDV---EINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIAD 211
+ + I + + K + A ++ E + N +
Sbjct: 920 SSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQR-EAEALIKEENLNEDA 978
Query: 212 LETQLADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKS-KERVSHIQKKLA 268
+ + KR+ E G ++N + +N + + ++ +++ +K
Sbjct: 979 AKRYIRTSLKREYATEN----GTELNETLPKLSPLNPQYKTKKQAVFQKIVSFIEKFK 1032
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 33.7 bits (76), Expect = 0.39
Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 2/144 (1%)
Query: 329 KAEATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQN--EIKKKRHEMEEAQKRID 386
K + + A K+++ + N+E G + + + T N E+KK + ++E++ ++ +
Sbjct: 568 KGLSLQEANKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKRE 627
Query: 387 KLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEELGDAKTDKHEDTR 446
LE + + S NK E + KE + + + K
Sbjct: 628 HLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRE 687
Query: 447 RKKKQELVENFKKAYSGVYDRMIN 470
K E + K +S +D N
Sbjct: 688 LSDKLEKISKDLKDFSKSFDEFKN 711
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A
{Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Length = 86
Score = 30.7 bits (70), Expect = 0.40
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 624 EMGNLKAQKEKLSEELREAMKKSRKESELNTVQSTIKGLEIRLNYSRQDLQ 674
++ L+ Q +LR+ + E +T + + E + R +Q
Sbjct: 4 QLSQLQCQLAAKEAKLRDL--EDSLARERDTSRRLLAEKEREMAEMRARMQ 52
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 32.5 bits (75), Expect = 0.49
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 13/47 (27%)
Query: 1 MSPILQYIEVDNFK-SYKGK--------FSIGPLKKFTAVIGPNGSG 38
M+ L V+N Y+ + F + AV+G NG G
Sbjct: 1 MNKAL---SVENLGFYYQAENFLFQQLNFDLNK-GDILAVLGQNGCG 43
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural
genomics, center for structural GEN infectious diseases;
HET: FFT; 2.46A {Campylobacter jejuni}
Length = 225
Score = 32.0 bits (74), Expect = 0.63
Identities = 9/65 (13%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 625 MGNLKAQKEKLSEELREAMKKSRKESELNTVQSTIKGLEIRLNY-SRQDLQNTKSQIAKL 683
+G+L ++K+ E++ +K++ L + + ++Y +R ++ ++ +
Sbjct: 99 IGDLSRLEDKVREKITLVEEKTKHCDALC--------VNLAISYGARDEIIRAAKRVIEK 150
Query: 684 EAEID 688
+ E++
Sbjct: 151 KLELN 155
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 32.9 bits (74), Expect = 0.64
Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 411 SDVGSSKNRVQELQKELEQVIEELGDAKTD-------KHEDTRRKKKQELVENFKKAYSG 463
D G + RV+ L+++L + E++ + K HE RR+ + E + S
Sbjct: 12 IDQGPAIGRVRVLEEQLVKAKEQIENYKKQTRNGLGKDHEILRRRIENGAKELWFFLQSE 71
Query: 464 VYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARL 504
+ ++ N+ +R+ LG + +I+ D ++
Sbjct: 72 L-KKLKNLEGNELQRHADEFLLDLGHHERSIMTDLYYLSQT 111
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 32.6 bits (74), Expect = 0.82
Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 108 ETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEI 167
+ +KELEDE ++ E+ +++ + E +E ++ +N E ++ ++ D+ +
Sbjct: 96 QAKLKELEDE---QRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDI-L 151
Query: 168 NKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYE 227
NK S K ++LA+A + + R E + + ++ D K E E
Sbjct: 152 NKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAE--TVMVKEYRDKI-DALKNAIEVE 208
Query: 228 RQSI 231
R +
Sbjct: 209 RDGM 212
Score = 29.9 bits (67), Expect = 4.7
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 380 EAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEEL 434
Q ++ +LED R LK N K+KE+ ++ N + + ++
Sbjct: 94 GIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQF 148
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 31.2 bits (71), Expect = 0.83
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 4 ILQYIEVDNFKSYKGKFSIGPLKKFTAVIGPNGSG 38
L+ + V NF+S+ + + +IG NGSG
Sbjct: 2 KLERVTVKNFRSHS-DTVVEFKEGINLIIGQNGSG 35
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 31.9 bits (72), Expect = 0.91
Identities = 25/138 (18%), Positives = 62/138 (44%), Gaps = 14/138 (10%)
Query: 53 QAEEETNMSYLKKKGVVAERKEAKIEKDE---AEKYQRIREEIVAKEVEHQLF----KLY 105
Q +E ++ + + V ++ ++ E+Y R +E+ K + F K++
Sbjct: 6 QVVKEDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIF 65
Query: 106 HN--ETDIKELEDELDKKKGEVEKIERR-----KEKAENILREKKKEQGALNRELAKVDQ 158
+T K ++ L++ + E + E + E+ ++ + E + + L ++L
Sbjct: 66 EEQGQTQEKCSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQDLRAQAS 125
Query: 159 EIREMDVEINKKRPSLIK 176
+ RE+D +N +P L++
Sbjct: 126 DNREIDKRMNSLKPDLMQ 143
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma
protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1
PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Length = 191
Score = 31.7 bits (71), Expect = 0.96
Identities = 27/188 (14%), Positives = 58/188 (30%), Gaps = 8/188 (4%)
Query: 275 VEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATK 334
VE E + + R +Y R + E ++ T E
Sbjct: 6 VETEPEPELRQQTEWQSGQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQ---ELRA 62
Query: 335 RAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKR--HEMEEAQKRIDKLEDHI 392
+ +++L E + + E R ++ + + + R +ME+ R+ + +
Sbjct: 63 LMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVCGRLVQYRGEV 122
Query: 393 RQNEASLKDN--KKLKEELNSDVGSSKNRVQELQKELEQVIEELGDAKTDKHEDTRRKKK 450
+ + +L L +LQK L ++ R++
Sbjct: 123 QAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGA-REGAERGLSAIRERL 181
Query: 451 QELVENFK 458
LVE +
Sbjct: 182 GPLVEQGR 189
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 32.4 bits (74), Expect = 0.96
Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 5/97 (5%)
Query: 610 SLDLARKAKRWDDKEMGNLKAQKEKLSEELREAMKKSRKESELNTVQSTIKGLEIRLNYS 669
D + R NL K S+ + E MKK + +V + + +
Sbjct: 38 KADSEWRRCR---FRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADA 94
Query: 670 RQDLQNT--KSQIAKLEAEIDALNARADATEPKIKAI 704
+L+ + K ++ I +A E +
Sbjct: 95 LANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFEN 131
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 32.4 bits (74), Expect = 1.1
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 19/81 (23%)
Query: 765 TKKNVARWERAVSDDEEELARAQGA---EEKLAGEMRAEADKL-ENMRAT---RL----- 812
K ++ RW+ VSD E L A G + A + ++ A ++ ++ L
Sbjct: 325 KKTSLPRWKFCVSDTENNLGFALGPMFVKATFAEDSKSIATEIILEIKKAFEESLSTLKW 384
Query: 813 ----TKKQA---VDAMDEEIG 826
T+K A DA+ IG
Sbjct: 385 MDEETRKSAKEKADAIYNMIG 405
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 32.1 bits (74), Expect = 1.3
Identities = 8/63 (12%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 108 ETDIKELEDELDKKKGEVEKIERR------KEKA-ENILREKKKEQGALNRELAKVDQEI 160
E + E L + E+ +R+ +EKA + ++ ++ + ++ + +
Sbjct: 799 EEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREAL 858
Query: 161 REM 163
++
Sbjct: 859 SQI 861
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase,
conformational change, peptide binding, ATP-binding,
cell inner membrane; HET: ADP; 3.10A {Thermotoga
maritima} PDB: 3din_A*
Length = 822
Score = 31.9 bits (73), Expect = 1.3
Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 25/117 (21%)
Query: 70 AERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDIKELEDEL----------- 118
+ R + +EKD E + I E++V+ VE DI+ L++ L
Sbjct: 657 SLRDQILLEKDYDEYLKDIFEDVVSTRVEEFC---SGKNWDIESLKNSLSFFPAGLFDLD 713
Query: 119 -DKKKGEVEKIERRKEKAENILREKKKEQGALNRELAK------VDQE----IREMD 164
+ E + + + KK+E G R++ + +D + E++
Sbjct: 714 EKQFSSSEELHDYLFNRLWEEYQRKKQEIGEDYRKVIRFLMLRIIDDHWRRYLEEVE 770
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 31.6 bits (72), Expect = 1.5
Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 19/81 (23%)
Query: 765 TKKNVARWERAVSDDEEELARAQGA---EEKLAGEMRAEADKL-ENMRAT---RL----- 812
T A W R + + A G E AGE + + L +R L
Sbjct: 347 TTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTW 406
Query: 813 ----TKKQA---VDAMDEEIG 826
TKK+A A+ E IG
Sbjct: 407 MDAETKKRAEEKALAIKERIG 427
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A
{Enterobacteria phage HK97} PDB: 3qpr_A
Length = 385
Score = 31.4 bits (70), Expect = 1.6
Identities = 15/102 (14%), Positives = 36/102 (35%)
Query: 70 AERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDIKELEDELDKKKGEVEKIE 129
+E + +E+++ + E+E ++D+ ++++EL K + +E
Sbjct: 2 SELALIQKAIEESQQKMTQLFDAQKAEIESTGQVSKQLQSDLMKVQEELTKSGTRLFDLE 61
Query: 130 RRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKR 171
++ EKK EL K + +
Sbjct: 62 QKLASGAENPGEKKSFSERAAEELIKSWDGKQGTFGAKTFNK 103
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
2.60A {Mycobacterium tuberculosis}
Length = 699
Score = 31.6 bits (72), Expect = 1.7
Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 19/81 (23%)
Query: 765 TKKNVARWERAVSDDEEELARAQGA---EEKLAGEMRAEADKL-ENMRAT---RL----- 812
++ RW+R VS E + A G + + ++ D L +N++ +
Sbjct: 354 AQQLRDRWKRGVSLVENLMGDAVGKLYVQRHFPPDAKSRIDTLVDNLQEAYRISISELDW 413
Query: 813 ----TKKQA---VDAMDEEIG 826
T+++A ++ ++G
Sbjct: 414 MTPQTRQRALAKLNKFTAKVG 434
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 30.0 bits (67), Expect = 1.8
Identities = 20/119 (16%), Positives = 51/119 (42%)
Query: 111 IKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKK 170
I+ +E+ELD+ + + ++ E+AE E ++ + K ++++ ++++ +
Sbjct: 5 IQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEA 64
Query: 171 RPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQ 229
+ + + + +KL + L + E A+LE +L V E +
Sbjct: 65 KHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDK 123
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 30.6 bits (69), Expect = 1.9
Identities = 16/155 (10%), Positives = 50/155 (32%), Gaps = 9/155 (5%)
Query: 285 NKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATKRAGKILQQLD 344
+D+ D + L+ +K A + + + ++ +K E + +
Sbjct: 6 LQDLDDFQAWLSITQKAVASED----MPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKE 61
Query: 345 TINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKD--- 401
+ + +G D L Q+++ + M E++ ++ + K
Sbjct: 62 SGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEA 121
Query: 402 --NKKLKEELNSDVGSSKNRVQELQKELEQVIEEL 434
+ + + + S + ++ E + +
Sbjct: 122 ILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSM 156
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A
motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans}
Length = 359
Score = 31.0 bits (71), Expect = 2.1
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 4 ILQYIEVDNFKSYKGKFSIGPLKKFTAVIGPNGSG 38
L + N+++ ++ + T + G NG+G
Sbjct: 5 RLSALSTLNYRNLA-PGTLNFPEGVTGIYGENGAG 38
>3rg9_A Bifunctional dihydrofolate reductase-thymidylate; oxidoreductase,
oxidoreductase-oxidoreductase inhibitor complex; HET:
NDP WRA; 2.00A {Trypanosoma brucei rhodesiense} PDB:
3qfx_A*
Length = 240
Score = 30.6 bits (69), Expect = 2.4
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 9/69 (13%)
Query: 528 KPLKERLRNI---RDPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDI 584
+PL R N+ R + L D + A + V EDA+++
Sbjct: 95 RPLSNR-LNVVLSRSAT-----KEQLLAGIPDPIKRAEAANDVVAVNGGLEDALRMLVSK 148
Query: 585 EPQHRYDAV 593
E + V
Sbjct: 149 EHTSSIETV 157
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 30.7 bits (70), Expect = 3.0
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 610 SLDLARKAKRWDDKEMGNLKAQKEKLSEELREAMKKSRKESELNTVQSTIKGLEIRLNYS 669
S + R +++ +L+ +KE ++E +R + +++ + L R
Sbjct: 74 STWQELRQLR---EQIRSLEEEKEAVTEAVRALVVN--QDNSQVQQDPQYQSLRARGREI 128
Query: 670 RQDLQNTKSQIAKLEAEIDALNAR 693
R+ L + A+LE + R
Sbjct: 129 RKQLTLLYPKEAQLEEQFYLRALR 152
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 29.9 bits (68), Expect = 3.1
Identities = 12/59 (20%), Positives = 29/59 (49%)
Query: 880 QKYDRKLAKSIQEMTSRLQTIQAPNLRAMEKLEHAKENLMKTNEEFENARKRAKKAKAN 938
+ ++ L K ++ + Q ++ A E+L+ K+ ++ +F+N RKR ++
Sbjct: 4 RNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKA 62
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB:
2quf_A
Length = 232
Score = 30.1 bits (67), Expect = 3.2
Identities = 15/111 (13%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
Query: 63 LKKKGVVAERKEAKIEKDEAEKYQRIREEIV-----------AKEVEHQLFKLYHNETDI 111
++++GV+ ++ + +KY +I K ++ +L E +
Sbjct: 49 MEREGVLQSYEKEERFIGPTKKYYKISIAKSYVFTLTPEMFWYKGLDLGDAELRDFEISL 108
Query: 112 KELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIRE 162
L+ E K + + ++ E +L K + + + K+ + +
Sbjct: 109 SGLDTEPSTLKEMITDFIKANKELEKVLEAFKTIESYRSSLMRKIKEAYLK 159
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 30.3 bits (68), Expect = 3.5
Identities = 33/242 (13%), Positives = 71/242 (29%), Gaps = 7/242 (2%)
Query: 39 ALKDDYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVE 98
L + Y R++AE + + ++ A E + +E +E
Sbjct: 34 YLLEQYNRVEAEEARLSDLIT-GFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDG 92
Query: 99 HQLFKLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQ 158
N D + ++ + + + + ++E L+ +
Sbjct: 93 DDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRL 152
Query: 159 EIREMD--VEINKKRPSLIKSKERVSHIQK-KLASAKKSLVEVRQANEAHNKDIADLETQ 215
++ D V + ++++ER I K + K +
Sbjct: 153 VPKQFDYLVNSMRVMMDRVRTQER--LIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAA 210
Query: 216 LADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSK-ERVSHIQKKLASAKKSL 274
+A + + S + Q E +K R+S + K AKK +
Sbjct: 211 IAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEM 270
Query: 275 VE 276
VE
Sbjct: 271 VE 272
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 29.6 bits (67), Expect = 3.6
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 4 ILQYIEVDNFKSYKGKFSIGPLKKFTAVIGPNGSG 38
L+ + V NF+S+ + + +IG NGSG
Sbjct: 2 KLERVTVKNFRSHS-DTVVEFKEGINLIIGQNGSG 35
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 29.8 bits (68), Expect = 4.2
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 27 KFTAVIGPNGSG 38
+ ++GPNG+G
Sbjct: 27 EILHLVGPNGAG 38
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 30.3 bits (69), Expect = 4.2
Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 380 EAQKRIDKLEDHIRQNEAS-----LKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEEL 434
K I++L +N+ + + + +EL + R+ EL+ E+E++ +++
Sbjct: 42 TKLKEINRLRH--ERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKI 99
Query: 435 GDA 437
Sbjct: 100 DYY 102
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 2.00A
{Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Length = 124
Score = 28.9 bits (65), Expect = 4.3
Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 177 SKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPG 233
+ +++ + L+ + + + A + + DVR A+ ++ I G
Sbjct: 2 NDKKIELLTTYLS------LYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKG 52
Score = 28.9 bits (65), Expect = 4.3
Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 256 SKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPG 312
+ +++ + L+ + + + A + + DVR A+ ++ I G
Sbjct: 2 NDKKIELLTTYLS------LYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKG 52
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 30.2 bits (67), Expect = 4.4
Identities = 13/99 (13%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 93 VAKEVEHQLFKLYHNETDIKELED---ELDKKKGEVEKIERRKEKAENIL-REKKKEQGA 148
+ + E E ++K+L+ + E +I+ + + + +E+ + A
Sbjct: 17 INQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERMSRETA 76
Query: 149 LNRELAKVDQEIREMDVEINKKRPSLI-KSKERVSHIQK 186
L ++ ++ ++ + + R L K ++ + ++K
Sbjct: 77 LQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRK 115
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 30.3 bits (69), Expect = 4.5
Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 16/93 (17%)
Query: 373 KKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIE 432
+K E+ + + + D L + +++ ++L +D + +E +
Sbjct: 527 RKFDELVQTRNQGDHL---LHSTRKQVEE---AGDKLPADD----------KTAIESALT 570
Query: 433 ELGDAKTDKHEDTRRKKKQELVENFKKAYSGVY 465
L A + + K QEL + +K
Sbjct: 571 ALETALKGEDKAAIEAKMQELAQVSQKLMEIAQ 603
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled
coil, alanine, symmetry, axial stagger, BEND,
contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Length = 81
Score = 27.9 bits (62), Expect = 4.6
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 371 IKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQV 430
IKKK M+ + + D Q EA K ++ ++L ++ + + +++ + EL++
Sbjct: 4 IKKK---MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKY 60
Query: 431 IEELGDAKTD 440
E L DA+
Sbjct: 61 SESLKDAQEK 70
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 29.3 bits (66), Expect = 4.9
Identities = 8/52 (15%), Positives = 21/52 (40%)
Query: 887 AKSIQEMTSRLQTIQAPNLRAMEKLEHAKENLMKTNEEFENARKRAKKAKAN 938
S +++ R + + + E ++ +++ E EN R+R +
Sbjct: 31 EASAEQVDPRDEKVANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEK 82
>2y2m_A PBP1B, penicillin-binding protein 1B; transferase, infection, cell
WALL, peptidoglycan, inhibitor; HET: E08; 1.62A
{Streptococcus pneumoniae} PDB: 2y2g_A* 2y2h_A* 2y2j_A*
2y2k_A* 2y2l_A* 2y2i_A* 2y2n_A* 2y2o_A* 2y2p_A* 2y2q_A*
2uwy_A* 2xd1_A* 2bg1_A 2xd5_A* 2uwx_A* 2fff_B
Length = 494
Score = 29.8 bits (67), Expect = 5.3
Identities = 11/116 (9%), Positives = 39/116 (33%), Gaps = 17/116 (14%)
Query: 323 TEYTNLKAEATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQ 382
Y++ A+ + + Q + R + + + +
Sbjct: 8 ITYSDGTVIASIESDLLRQDF--------LPSGTVTGISRDYLYFTTLAEAQERMYDYLA 59
Query: 383 KRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRV-----QELQKELEQVIEE 433
+R + ++ NEA+ K + L + ++ + ++ Q++ ++ + +
Sbjct: 60 QRDNVSAKELK-NEATQKFYRDLAAK---EIENGGYKITTTIDQKIHSAMQSAVAD 111
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 29.6 bits (67), Expect = 5.4
Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 21/124 (16%)
Query: 110 DIKELEDELD---------KKKGEVEKIERRKEKAENILREKKKEQ----GALNRELAKV 156
+I L L + +G IE K + + E L E +
Sbjct: 133 EIDALSARLGCPVIPLVSTRGRG----IEALKLAIDRYKANENVELVHYAQPLLNEADSL 188
Query: 157 DQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQL 216
+ + D+ + ++R ++ E + + A + L D +
Sbjct: 189 AKVMPS-DIPLKQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDP---ALHI 244
Query: 217 ADVR 220
AD R
Sbjct: 245 ADAR 248
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide
transferase, ATP-GTP diphosphotransferase RNA
processing, RNA degradation; 2.5A {Streptomyces
antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4
d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Length = 757
Score = 29.9 bits (68), Expect = 6.0
Identities = 11/101 (10%), Positives = 31/101 (30%), Gaps = 7/101 (6%)
Query: 747 EAELRSQQERQKIC--QD---KDTKKNVARWERAVSDDEEELAR-AQGAEEKLAGEMRAE 800
++ + +C Q K + + ++ L + +L+ +
Sbjct: 244 AGLDAAKPFIKVLCKAQADLAAKAAKPTGEFPVFLDYQDDVLEALSAAVRPELSAALT-I 302
Query: 801 ADKLENMRATRLTKKQAVDAMDEEIGKARREVGSIAKDIQA 841
A K + K A + + E +E+ + + +
Sbjct: 303 AGKQDREAELDRVKALAAEKLLPEFEGREKEISAAYRALTK 343
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 29.7 bits (67), Expect = 6.2
Identities = 10/61 (16%), Positives = 22/61 (36%)
Query: 388 LEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEELGDAKTDKHEDTRR 447
+ D ++ E ++ + K E + + + V EL + + +LG R
Sbjct: 278 IRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGLDVKKMTVPNPR 337
Query: 448 K 448
Sbjct: 338 V 338
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain,
coiled-coil domain, DNA and cleavage, nucleus; HET: DNA
EVP; 2.16A {Homo sapiens}
Length = 803
Score = 29.7 bits (66), Expect = 6.6
Identities = 26/172 (15%), Positives = 53/172 (30%), Gaps = 31/172 (18%)
Query: 38 GALKDDYERL--KAEMIQA--EEETNMSYLKKKGVVAERKEAKIEKD------------E 81
G L + +L +A I + + + KK ++ + E D
Sbjct: 637 GMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAA 696
Query: 82 AEKYQRIREEIVAKEVEHQLFKLY----------HNETDIKELEDELDKKKGEVEKIERR 131
E + + + + + + + ++EL + D K EV ++R+
Sbjct: 697 EEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRK 756
Query: 132 KEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSH 183
K++ A EL KV+ + RE + H
Sbjct: 757 SPSD-----LWKEDLAAFVEELDKVESQEREDGAPGFSSISAHHHHHHHHHH 803
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 29.1 bits (65), Expect = 7.4
Identities = 48/250 (19%), Positives = 98/250 (39%), Gaps = 18/250 (7%)
Query: 196 VEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIK 255
VE A+E + KD+A + L + +A+ +D+N ++ + + S +K
Sbjct: 22 VEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVK 81
Query: 256 SK-----ERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSI 310
K R I+ A+ + L E + ++ +D+ D E+ + K K
Sbjct: 82 DKRETINGRFQRIKSMAAARRAKLNESHRLHQ-FFRDMDDEESWI----KEKKLLVSSED 136
Query: 311 PGRDINLESAQMTEYTNLKAEATKRAGKI---LQQLDTINREQKGDQDKLDNELRQQVQT 367
GRD+ ++ L+AE I L ++ + ++++ L Q V
Sbjct: 137 YGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDH 196
Query: 368 QNEIKKK---RHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQ 424
E+K+ R + E + ++ + EA + + K+ + D G + +Q L
Sbjct: 197 WKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINE--KMTLVASEDYGDTLAAIQGLL 254
Query: 425 KELEQVIEEL 434
K+ E +
Sbjct: 255 KKHEAFETDF 264
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 28.9 bits (64), Expect = 7.7
Identities = 18/95 (18%), Positives = 37/95 (38%)
Query: 178 KERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDIN 237
+E + +QK KS + ++ + + +++ ++K K Y + + +
Sbjct: 97 QELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLK 156
Query: 238 LESAQDVEINKKRPSLIKSKERVSHIQKKLASAKK 272
E A EI K K+ + +K A AK
Sbjct: 157 KEGATQREIEKAAVKSKKATDTYKLYVEKYALAKA 191
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell
surface, secretory P metal binding protein; 2.00A {Homo
sapiens} PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Length = 211
Score = 28.7 bits (63), Expect = 7.8
Identities = 23/179 (12%), Positives = 62/179 (34%), Gaps = 7/179 (3%)
Query: 255 KSKERVSHIQKKLASAKKSLVEVRQA-----NEAHNKDIADLETQLADVRKRKAEYERQS 309
K +ER+S + ++ A++ + +A + + + LE + A+ R++ E
Sbjct: 33 KHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMAR 92
Query: 310 IPGRDINLESAQMTEYTNLKAEATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQN 369
+ + + Y R + L R ++ D+
Sbjct: 93 VEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDP 152
Query: 370 EIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELE 428
+ + + + + + + Q+ + L + + EE+ +V + Q ++E
Sbjct: 153 KKAAQIR--SQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDIE 209
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 29.1 bits (66), Expect = 8.0
Identities = 10/63 (15%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 372 KKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVI 431
K R +++E K+++ ++ I K+ ++L ++ N +E+ ++ +
Sbjct: 43 VKLRFDLDEHNKKLNSVQKEI----GKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEAD 98
Query: 432 EEL 434
+ L
Sbjct: 99 KNL 101
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 28.9 bits (65), Expect = 8.0
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 375 RHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVI 431
E + ++R+++L + K+NK LKE L+ + +++ VI
Sbjct: 25 YTENQHLKERLEELAQLESEVADLKKENKDLKESLD-----ITDSIRDYDPLNASVI 76
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 29.1 bits (64), Expect = 8.7
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 95 KEVEHQLFKLY----HNETDIKELEDELDKKKGEVEKIERRKEKAENILREK-KKEQGAL 149
KE++ ++ + E +IK LED D+ + + ++ R+ + + + K+EQ L
Sbjct: 5 KELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLL 64
Query: 150 NRELAKVDQEIREMDVEINK 169
+ +D + +E+ +I +
Sbjct: 65 KKMYLMLDNKRKEVVHKIIE 84
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 29.2 bits (65), Expect = 8.8
Identities = 19/185 (10%), Positives = 60/185 (32%), Gaps = 15/185 (8%)
Query: 257 KERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDIN 316
+ + ++ K+ L + + ++ DLE +++ + E G+D +
Sbjct: 89 DKHYAGLKDVAEERKRKLENMYHLFQ-LKRETDDLEQWISEKELVASSPE----MGQDFD 143
Query: 317 LESAQMTEYTNLKAE----ATKRAGKILQQLDTINREQKGDQDKLD---NELRQQVQTQN 369
+ ++ + E +R + ++ + + + + L +
Sbjct: 144 HVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLL 203
Query: 370 EIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQ 429
E+ R ++ A + + + + + EL DVG + + +
Sbjct: 204 ELIDTRMQLLAASYDLHRYFYTGAEILGLID---EKHRELPEDVGLDASTAESFHRVHTA 260
Query: 430 VIEEL 434
++
Sbjct: 261 FERDV 265
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P,
endocytosis/exocytosis complex; 2.85A {Saccharomyces
cerevisiae} SCOP: a.118.17.2
Length = 235
Score = 28.8 bits (64), Expect = 9.1
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 375 RHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSK--NRVQELQKELEQVIE 432
R E A + + +E + L + +E + ++ S K R + + +L Q I
Sbjct: 31 RLRFESAVETLLDIESQLE----DLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL 86
Query: 433 ELGDAKTDKH 442
+ K
Sbjct: 87 SSNEIVHLKS 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.128 0.341
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,775,662
Number of extensions: 1011419
Number of successful extensions: 4265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3820
Number of HSP's successfully gapped: 682
Length of query: 1070
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 967
Effective length of database: 3,825,930
Effective search space: 3699674310
Effective search space used: 3699674310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.1 bits)