RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16118
(1070 letters)
>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima
[TaxId: 2336]}
Length = 161
Score = 115 bits (290), Expect = 2e-30
Identities = 39/160 (24%), Positives = 80/160 (50%), Gaps = 6/160 (3%)
Query: 451 QELVENFKKAYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLK 510
+ + E K+ + G+ D + N+ V ++Y++A++ +LG + IVV + TA+ +++LK
Sbjct: 7 RAVFEE-KERFPGLVDVVSNLIE-VDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLK 64
Query: 511 DHQLDPETFLPIDYLQTKPLKERLRNIRDPKNVKLLYDVLKYQPEDIKRVVLFATNNALV 570
++ T LP+D + + + V D++K+ P D++ + F N++V
Sbjct: 65 QNEAGRVTILPLDLIDGSFNRIS-GLENERGFVGYAVDLVKF-PSDLEVLGGFLFGNSVV 122
Query: 571 CETPEDAMKVAYDIEPQHRYDAVALDGTFYQKSGIMSGGS 610
ET +DA+++ + LDG G ++GG
Sbjct: 123 VETLDDAIRMKKK--YRLNTRIATLDGELISGRGAITGGR 160
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 427
Score = 68.2 bits (165), Expect = 2e-12
Identities = 32/59 (54%), Positives = 42/59 (71%)
Query: 995 HRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053
+ Y P+PFFVLDE+DAALD TN+ ++A+YI LQ IVISLK F +D+LVG+
Sbjct: 350 NSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408
Score = 44.7 bits (104), Expect = 5e-05
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 5 LQYIEVDNFKSYKGKFSIGPL-KKFTAVIGPNGSG 38
L +E+ NFKSY+G +G FT++IGPNGSG
Sbjct: 3 LVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSG 37
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 49.7 bits (117), Expect = 1e-06
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 995 HRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053
P+PF+VLDE+D+ LD+ N + + ++ + Q IVI+ + AD L G+
Sbjct: 237 MEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHT-QFIVITHNKIVMEAADLLHGV 294
Score = 44.6 bits (104), Expect = 4e-05
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 5 LQYIEVDNFKSYKGKFSIGPLKKFTAVIGPNGSG 38
L+ + + FKS+ IG + TA++GPNGSG
Sbjct: 3 LKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSG 36
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 369
Score = 48.7 bits (114), Expect = 2e-06
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 998 HPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICP-- 1055
+LDE LD K+ + + + Q I++S EE AD ++ I
Sbjct: 301 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLEN 360
Query: 1056 GSVTISSI 1063
GS + +
Sbjct: 361 GSSKVEVV 368
Score = 40.2 bits (92), Expect = 0.001
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 4 ILQYIEVDNFKSYKGKFSIGPLKKFTAVIGPNGSG 38
L+ + V NF+S+ + + +IG NGSG
Sbjct: 2 KLERVTVKNFRSHS-DTVVEFKEGINLIIGQNGSG 35
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 42.3 bits (98), Expect = 2e-04
Identities = 24/59 (40%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 995 HRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053
++ PAPF++ DEIDA LD+ N+ +VA I +++S Q IVI+L++ ++AD ++G+
Sbjct: 242 QKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKES-QFIVITLRDVMMANADKIIGV 299
Score = 38.4 bits (88), Expect = 0.003
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 5 LQYIEVDNFKSYKGKFSIGPL-KKFTAVIGPNGSG 38
++ +E+ FKSY K + P K FTA++G NGSG
Sbjct: 4 IEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSG 38
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 292
Score = 38.6 bits (88), Expect = 0.003
Identities = 14/65 (21%), Positives = 25/65 (38%)
Query: 992 IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLV 1051
+ + +LDE LD K+ + + + Q I++S EE AD ++
Sbjct: 218 MSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 277
Query: 1052 GICPG 1056
I
Sbjct: 278 RISLE 282
Score = 36.7 bits (83), Expect = 0.010
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 4 ILQYIEVDNFKSYKGKFSIGPLKKFTAVIGPNGSG 38
L+ + V NF+S+ + + +IG NGSG
Sbjct: 2 KLERVTVKNFRSHS-DTVVEFKEGINLIIGQNGSG 35
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 30.7 bits (69), Expect = 0.74
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 3/139 (2%)
Query: 31 VIGPNGSGALKDDYERLKAEMIQAEEETNMSYLKK--KGVVAERKEAKIEKDEAEKYQRI 88
++ G DD + + E+ A+ ++ +++ K KEAK E EK +
Sbjct: 112 IVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFELSVMEKILPV 171
Query: 89 REEIVAKEVEHQLFKLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGA 148
E + L + V + + +RE ++GA
Sbjct: 172 LENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGA 231
Query: 149 LNREL-AKVDQEIREMDVE 166
+ + A ++ EI E+D E
Sbjct: 232 VVVPVCAAIESEIAELDDE 250
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 29.5 bits (66), Expect = 0.85
Identities = 10/85 (11%), Positives = 30/85 (35%)
Query: 359 NELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKN 418
Q + ++ E+ ++ + E + ++ ++ + +ELN
Sbjct: 31 YGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAV 90
Query: 419 RVQELQKELEQVIEELGDAKTDKHE 443
V + +++ + LG + E
Sbjct: 91 NVNDRCQKICDQWDRLGTLTQKRRE 115
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 30.5 bits (67), Expect = 1.2
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 418 NRVQELQKELEQVIEELGDAKTDKHEDTRRKKKQEL 453
+ + +L++E EQ+ ++ DA+ + T + +
Sbjct: 2 SELDQLRQEAEQLKNQIRDARKACADATLSQITNNI 37
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 30.0 bits (67), Expect = 1.4
Identities = 39/213 (18%), Positives = 76/213 (35%), Gaps = 18/213 (8%)
Query: 734 CKSIGVSTIRQYEEAELRSQQER--QKICQDKDTKKNVARWERAVSDDEEELARAQGAEE 791
+ IG +T+ +Y E E ER Q + D+ T + R + + E + ++
Sbjct: 152 LRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDS 211
Query: 792 KLAGEMRAEADKLENMRATRLTKKQAVDAMDEEIGKARREVGSIAKDIQAAQKSCVNLES 851
+ + R +A+D +DE + R + S ++I A ++ + LE
Sbjct: 212 AIIAAATLSHRYITERRLPD----KAIDLIDEAAARLRMALESAPEEIDALERKKLQLEI 267
Query: 852 KLEMKKSERHDILMNCKMNDIVLPMLRVQKYDRKLAKSIQEMTSRLQTIQAPNLRAMEKL 911
+ + L K D K + E ++L+ + KL
Sbjct: 268 E--------REALKKEKDPD----SQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKL 315
Query: 912 EHAKENLMKTNEEFENARKRAKKAKANFDRIKK 944
A+ L + E E A ++ +A R +
Sbjct: 316 REAQHRLDEVRREIELAERQYDLNRAAELRYGE 348
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid
3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId:
29760]}
Length = 450
Score = 29.7 bits (65), Expect = 1.9
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 909 EKLEHAKENLMKTNEEFENARKRAKKAKANFDRIKKER---YDKFTRCFEHVS 958
L + ++ + E+ + R+ + + DR + + F + VS
Sbjct: 394 SGLMSCFDQIL-SQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVS 445
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 29.3 bits (65), Expect = 2.4
Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 8 IEVDNF-KSYKGK------FSIGPLKKFTAVIGPNGSG 38
IE+++ + +K + ++ ++GP G+G
Sbjct: 2 IEIESLSRKWKNFSLDNLSLKVES-GEYFVILGPTGAG 38
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 28.6 bits (63), Expect = 2.6
Identities = 15/119 (12%), Positives = 43/119 (36%), Gaps = 1/119 (0%)
Query: 325 YTNLKAEATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKR 384
Y + K +R K+ ++ D + ++ + ++ ++
Sbjct: 35 YQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVN-ILTDKSYEDPTNIQGKYQK 93
Query: 385 IDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEELGDAKTDKHE 443
LE ++ + + +K +EE + S+ + +EL + + L + +K +
Sbjct: 94 HQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHLWDLLLELTLEKGD 152
>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific
5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
Length = 458
Score = 28.7 bits (64), Expect = 4.1
Identities = 14/80 (17%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 111 IKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKK 170
++EL +E+ + + K+ E + +K+ EQ ++ +D+ ++ D EI+
Sbjct: 323 VEELGEEIASQI---RALPIEKKIGEAMAIKKELEQKYVDLCTRSIDESSQQYDQEIHDL 379
Query: 171 RPSLIKSKERVSHIQKKLAS 190
+ + ++S + ++ S
Sbjct: 380 QLQISTVDLQISRLLQEQNS 399
>d1ngra_ a.77.1.2 (A:) p75 low affinity neurotrophin receptor {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 85
Score = 26.7 bits (59), Expect = 4.2
Identities = 9/59 (15%), Positives = 18/59 (30%)
Query: 107 NETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDV 165
N + L EL + ++ +L + A L + I+ D+
Sbjct: 20 NGDTWRHLAGELGYQPEHIDSFTHEACPVRALLASWGAQDSATLDALLAALRRIQRADI 78
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 28.3 bits (63), Expect = 4.8
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 11/46 (23%)
Query: 1 MSPILQYIEVDNF-KSYKGK-------FSIGPLKKFTAVIGPNGSG 38
+S I+ +EV + Y + + +IG NG+G
Sbjct: 2 VSDIV--LEVQSLHVYYGAIHAIKGIDLKVPR-GQIVTLIGANGAG 44
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 28.0 bits (62), Expect = 4.8
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 9/39 (23%)
Query: 8 IEVDNF-KSYKGK-------FSIGPLKKFTAVIGPNGSG 38
+++ N K++ I +F +GP+G G
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHE-GEFVVFVGPSGCG 38
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 27.9 bits (62), Expect = 6.6
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 9/39 (23%)
Query: 8 IEVDNF-KSYKGK-------FSIGPLKKFTAVIGPNGSG 38
+ V + K Y G ++IG +GSG
Sbjct: 3 LHVIDLHKRYGGHEVLKGVSLQARA-GDVISIIGSSGSG 40
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 27.7 bits (60), Expect = 6.6
Identities = 22/199 (11%), Positives = 59/199 (29%), Gaps = 12/199 (6%)
Query: 5 LQYIEVDNFKSYKGKFSIGPLKKFTAVIGPNGSGALKDDYERLKAEMIQAEEETNMSYLK 64
+ + + N+ + + + + T + G NG+G K+ + A T +
Sbjct: 4 FRSLTLINWNGFFAR-TFDLDELVTTLSGGNGAG---------KSTTMAA-FVTALIPDL 52
Query: 65 KKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDIKELEDELDKKKGE 124
EA +K + + H + ++ + +
Sbjct: 53 TLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVVGVRLQQVAGRDRK 112
Query: 125 VEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHI 184
V+ + ++ + LN A+V + E+ ++ K ++
Sbjct: 113 VDIKPFAIQGLPMSVQPTQLVTETLNERQARV-LPLNELKDKLEAMEGVQFKQFNSITDY 171
Query: 185 QKKLASAKKSLVEVRQANE 203
+ +R A++
Sbjct: 172 HSLMFDLGIIARRLRSASD 190
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 27.9 bits (61), Expect = 7.6
Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%)
Query: 338 KILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEA 397
+ L+ L R K + + + + N++K + E+ + + E+ I E
Sbjct: 632 QELENLGFP-RFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEE 690
Query: 398 SLKDNKKLKEELNSDVGS-SKNRVQELQKELEQVIEELGDAKTDKHEDTRRKKKQELVEN 456
+ L L + S +K R Q+L K+ ++ EL + +D +
Sbjct: 691 LYGTYEYL---LGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVG 747
Query: 457 FKK 459
+++
Sbjct: 748 YQE 750
>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 74
Score = 25.4 bits (56), Expect = 9.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 176 KSKERVSHIQKKLASAKKSLVEV 198
K++E I+K + AKK+L+EV
Sbjct: 49 KAQEVPEAIRKAIEDAKKNLIEV 71
Score = 25.4 bits (56), Expect = 9.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 255 KSKERVSHIQKKLASAKKSLVEV 277
K++E I+K + AKK+L+EV
Sbjct: 49 KAQEVPEAIRKAIEDAKKNLIEV 71
>d1xx7a_ a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 172
Score = 26.9 bits (59), Expect = 10.0
Identities = 18/87 (20%), Positives = 34/87 (39%)
Query: 348 REQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKE 407
+++ + L + L + + E K + K DKL+ I+ E L K L E
Sbjct: 86 NKEEAEAKALKDVLPEYTELFEEYSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSE 145
Query: 408 ELNSDVGSSKNRVQELQKELEQVIEEL 434
N+ K + +E+ + + L
Sbjct: 146 FWNALEDLEKLEISRYLREIIEEVRRL 172
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.128 0.341
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,745,083
Number of extensions: 185470
Number of successful extensions: 885
Number of sequences better than 10.0: 1
Number of HSP's gapped: 844
Number of HSP's successfully gapped: 169
Length of query: 1070
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 975
Effective length of database: 1,103,246
Effective search space: 1075664850
Effective search space used: 1075664850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)