Query psy16119
Match_columns 151
No_of_seqs 111 out of 323
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 21:23:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3690|consensus 100.0 9.3E-49 2E-53 358.3 13.8 126 1-130 513-644 (646)
2 PF01401 Peptidase_M2: Angiote 100.0 1E-46 2.3E-51 345.0 12.4 101 1-108 490-590 (595)
3 cd06461 M2_ACE Peptidase famil 100.0 3.4E-36 7.4E-41 269.8 11.0 90 1-97 388-477 (477)
4 cd06258 Peptidase_M3_like The 99.1 2E-10 4.3E-15 97.4 7.8 68 3-86 297-365 (365)
5 TIGR02289 M3_not_pepF oligoend 97.3 0.0012 2.6E-08 60.2 8.9 71 3-95 476-547 (549)
6 cd06459 M3B_Oligoendopeptidase 97.1 0.0033 7.1E-08 53.9 8.4 60 3-84 362-421 (427)
7 cd06456 M3A_DCP_Oligopeptidase 95.9 0.043 9.3E-07 49.1 8.5 66 2-86 354-420 (422)
8 PRK10280 dipeptidyl carboxypep 93.6 0.4 8.8E-06 45.7 8.7 64 3-85 612-676 (681)
9 cd06455 M3A_TOP Peptidase M3 T 93.5 0.38 8.3E-06 43.3 7.9 65 2-85 406-471 (472)
10 PF01432 Peptidase_M3: Peptida 93.2 0.31 6.7E-06 43.0 6.9 66 2-86 390-456 (458)
11 cd06460 M32_Taq Peptidase fami 93.1 0.33 7.1E-06 43.8 7.0 73 5-87 319-392 (396)
12 PRK10911 oligopeptidase A; Pro 92.8 0.64 1.4E-05 44.3 8.7 66 2-86 610-676 (680)
13 cd06457 M3A_MIP Peptidase M3 m 87.5 1.7 3.7E-05 39.1 6.3 60 3-81 393-453 (458)
14 KOG2090|consensus 84.8 3.5 7.5E-05 40.0 7.1 60 3-81 624-684 (704)
15 PF02074 Peptidase_M32: Carbox 78.5 4.5 9.8E-05 37.6 5.4 73 5-87 418-491 (494)
16 KOG2089|consensus 74.8 13 0.00029 36.4 7.5 69 2-87 638-707 (718)
17 PF09345 DUF1987: Domain of un 72.0 4.1 8.8E-05 30.2 2.8 18 83-100 24-41 (99)
18 TIGR02290 M3_fam_3 oligoendope 70.3 47 0.001 30.7 9.8 70 4-95 514-583 (587)
19 COG0339 Dcp Zn-dependent oligo 65.5 38 0.00082 33.2 8.4 64 3-85 614-678 (683)
20 KOG2794|consensus 62.0 1.8 3.9E-05 38.5 -1.0 60 35-97 280-340 (340)
21 cd02049 bacterial_SERPIN SERin 59.8 56 0.0012 27.9 7.8 72 12-96 8-79 (364)
22 PF00079 Serpin: Serpin (serin 58.0 67 0.0015 26.9 7.8 71 12-95 6-76 (371)
23 cd02052 PEDF Pigment epitheliu 51.0 85 0.0018 27.3 7.6 72 11-95 21-92 (374)
24 cd02043 plant_SERPIN SERine Pr 48.6 1E+02 0.0023 26.6 7.7 70 12-95 6-75 (381)
25 cd00172 SERPIN SERine Proteina 45.0 1.4E+02 0.003 25.3 7.8 72 12-96 5-76 (364)
26 PF07841 DM4_12: DM4/DM12 fami 43.1 37 0.0008 23.4 3.4 36 16-64 23-58 (82)
27 cd02056 alpha-1-antitrypsin_li 42.9 1.6E+02 0.0034 25.1 7.8 72 12-96 5-78 (361)
28 TIGR00181 pepF oligoendopeptid 39.7 2.9E+02 0.0063 25.5 9.5 48 47-95 540-587 (591)
29 cd02058 PAI-2 Plasminogen Acti 38.1 1.3E+02 0.0029 25.8 6.7 73 12-97 8-82 (380)
30 TIGR03853 matur_matur probable 37.4 1.1E+02 0.0025 22.1 5.2 38 50-87 6-55 (77)
31 COG1164 Oligoendopeptidase F [ 31.5 4.6E+02 0.01 24.9 10.0 75 3-98 520-594 (598)
32 PF02984 Cyclin_C: Cyclin, C-t 31.0 62 0.0013 22.2 3.0 41 46-86 45-85 (118)
33 COG2317 Zn-dependent carboxype 29.3 1.6E+02 0.0035 28.0 6.1 72 5-86 419-491 (497)
34 cd02057 maspin_like Maspin (ma 28.6 2.9E+02 0.0062 23.9 7.3 69 11-94 7-75 (372)
35 smart00076 IFabd Interferon al 28.4 80 0.0017 23.9 3.4 18 79-96 82-99 (117)
36 PF07580 Peptidase_M26_C: M26 26.0 1.3E+02 0.0028 29.8 5.1 60 35-98 136-213 (737)
37 cd00095 IFab Interferon alpha, 23.6 1E+02 0.0023 24.2 3.4 19 78-96 113-131 (152)
38 PF12206 DUF3599: Domain of un 21.3 24 0.00052 27.5 -0.7 9 37-45 8-16 (117)
39 cd04823 ALAD_PBGS_aspartate_ri 21.0 13 0.00027 33.3 -2.5 56 35-93 263-319 (320)
40 PF14802 TMEM192: TMEM192 fami 20.5 82 0.0018 26.7 2.3 52 52-103 165-231 (236)
41 PF09079 Cdc6_C: CDC6, C termi 20.4 1.8E+02 0.0039 19.7 3.7 14 13-26 21-34 (85)
42 cd08768 Cdc6_C Winged-helix do 20.2 2.1E+02 0.0046 19.1 4.0 13 13-25 28-40 (87)
43 PF03288 Pox_D5: Poxvirus D5 p 20.1 1.4E+02 0.0031 20.1 3.1 37 10-59 24-60 (86)
No 1
>KOG3690|consensus
Probab=100.00 E-value=9.3e-49 Score=358.34 Aligned_cols=126 Identities=49% Similarity=0.820 Sum_probs=118.8
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHHHHHhCCCCCcHHHHHHHhhCCCCCChH
Q psy16119 1 MEYIRYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSSVPWNEALFTATGESRLDAN 80 (151)
Q Consensus 1 ~pYiRYFls~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~~mm~lGsSkpW~eaL~~~TG~~~msa~ 80 (151)
|||+|||+|+|||||||||||+++|||.|+||+ .|||+||||+|++||++|++||++|+|+||++|||++||+++||++
T Consensus 513 ~~~~ryf~s~vlqFQf~kalC~~agq~~pg~pr-~pLh~CDi~~sk~aG~kL~~~M~lG~S~~W~evLE~~tGe~els~~ 591 (646)
T KOG3690|consen 513 VSYTRYFLSTVLQFQFLKALCQAAGQYGPGDPR-KPLHNCDIYDSKEAGEKLRTMMSLGSSRHWREVLEEITGEGELSGR 591 (646)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC-CCchhccccCCHHHHHHHHHHHHccCCccHHHHHHHHcCCCcCChH
Confidence 689999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccCCC------CCCCccccccccccceecCCccc
Q psy16119 81 ALREYFRPLEDWLVAENLRTGEFVGWT------YDGDYCKYSIQTANLQVSGGYYN 130 (151)
Q Consensus 81 aLLeYF~PL~~WL~~eN~~~~~~vGW~------~~~~~c~~s~~~~~~~~~~~~~~ 130 (151)
||||||+||.+||+++|+++++.|||+ .|+++|..+ ++++++|+..+
T Consensus 592 ~LLeYFePL~~WLk~~N~~~~~~vGW~~~~~~~~d~~~~~~~---~~~~f~g~~~~ 644 (646)
T KOG3690|consen 592 ALLEYFEPLFTWLKQENERLNVEVGWDGEPKTRQDGDGGNGL---DRVSFPGGECD 644 (646)
T ss_pred HHHHHHHHHHHHHHhhhhhcCcccCCCCCcCCCCCCccCCCc---cceeecccccc
Confidence 999999999999999999999999999 555566542 88888888765
No 2
>PF01401 Peptidase_M2: Angiotensin-converting enzyme This Prosite motif covers only the active site.; InterPro: IPR001548 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M2 (clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The catalytic residues and zinc ligands have been identified, the zinc ion being ligated to two His residues within the motif HEXXH, showing that the enzyme belongs to the E sub-group of metalloproteases []. Pepetidyl-dipeptidase A (angiotensin-converting enzyme) is a mammalian enzyme responsible for cleavage of dipeptides from the C-termini of proteins, notably converting angiotensin I to angiotensin II []. The enzyme exists in two differentially transcribed forms, the most common of which is from lung endothelium; this contains two homologous domains that have arisen by gene duplication []. The testis-specific form contains only the C-terminal domain, arising from a duplicated promoter region present in intron 12 of the gene []. Both enzymatic forms are membrane proteins that are anchored by means of a C-terminal transmembrane domain. Both domains of the endothelial enzyme are active, but have differing kinetic constants []. ]. A number of insect enzymes have been shown to be similar to peptidyl-dipeptidase A, these containing a single catalytic domain.; GO: 0008237 metallopeptidase activity, 0008241 peptidyl-dipeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YDM_A 3BKL_A 2C6N_B 1UZE_A 3BKK_A 2C6F_B 2IUX_A 2IUL_A 2XYD_B 3NXQ_B ....
Probab=100.00 E-value=1e-46 Score=344.99 Aligned_cols=101 Identities=55% Similarity=0.978 Sum_probs=88.2
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHHHHHhCCCCCcHHHHHHHhhCCCCCChH
Q psy16119 1 MEYIRYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSSVPWNEALFTATGESRLDAN 80 (151)
Q Consensus 1 ~pYiRYFls~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~~mm~lGsSkpW~eaL~~~TG~~~msa~ 80 (151)
+||||||||+||||||||+||++|||. +|||+||||+|++||++|++||++|+|+||+|||+++||+++|||+
T Consensus 490 ~py~ryfls~ilqFQ~~~~lC~~ag~~-------~pLh~Cdiy~s~~aG~~l~~ml~~G~S~~W~~~l~~~tg~~~~~a~ 562 (595)
T PF01401_consen 490 TPYIRYFLSTILQFQFYKALCEAAGHE-------GPLHRCDIYGSKEAGRKLKKMLSLGSSKPWPEALEELTGEREMSAS 562 (595)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHTTTT-------SSGGG---TT-HHHHHHHHHHHTTTTSS-HHHHHHHHHSSSS--SH
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCCC-------CCccccccccchhhHHHHHHHhcCCCCCCHHHHHHHHhCCCCcChH
Confidence 699999999999999999999999983 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccCCCC
Q psy16119 81 ALREYFRPLEDWLVAENLRTGEFVGWTY 108 (151)
Q Consensus 81 aLLeYF~PL~~WL~~eN~~~~~~vGW~~ 108 (151)
||||||+||++||+++|++++++|||+.
T Consensus 563 ~ll~YF~PL~~wL~~~n~~~~~~~GW~~ 590 (595)
T PF01401_consen 563 ALLEYFQPLMDWLKEQNKKNGECVGWDE 590 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-SS-CS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcCCCCc
Confidence 9999999999999999999999999984
No 3
>cd06461 M2_ACE Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem active sites with distinct catalytic properties, whereas germinal ACE, the function of which is largely unknown, has just a single active site. Recently, an ACE homolog, ACE2, has been identified in humans that differs from ACE; it preferentially removes carboxy-terminal hydrophobic or basic amino acids and appears to be important in cardiac function. ACE homologs (also known as members of the M2 gluzincin family) have been found in a wide variety of species, including those that neither h
Probab=100.00 E-value=3.4e-36 Score=269.77 Aligned_cols=90 Identities=61% Similarity=1.030 Sum_probs=88.1
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHHHHHhCCCCCcHHHHHHHhhCCCCCChH
Q psy16119 1 MEYIRYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSSVPWNEALFTATGESRLDAN 80 (151)
Q Consensus 1 ~pYiRYFls~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~~mm~lGsSkpW~eaL~~~TG~~~msa~ 80 (151)
|||||||||+|+|||||++||++||| .+|||+||||+|++||++|++||++|+|+||+|+|+++||+++||++
T Consensus 388 ~PYi~YflA~ilqfQf~~~lc~~a~~-------~~plh~C~~~~s~~Ag~~l~~~l~lG~S~~w~e~le~~~g~~~~s~~ 460 (477)
T cd06461 388 TPYIRYFLSFILQFQFHKALCKAAGH-------TGPLHKCDIYGSKEAGKKLRAMLSLGSSKPWPEALEALTGEREMDAS 460 (477)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhccC-------CCCcccccccChHHHHHHHHHHHhCcCCCCHHHHHHHhcCCCCCChH
Confidence 69999999999999999999999998 39999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16119 81 ALREYFRPLEDWLVAEN 97 (151)
Q Consensus 81 aLLeYF~PL~~WL~~eN 97 (151)
+|+|||+||++||+++|
T Consensus 461 ~l~eyf~pl~~wL~~~n 477 (477)
T cd06461 461 ALLEYFQPLIDWLKEQN 477 (477)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999999987
No 4
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases. The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig
Probab=99.11 E-value=2e-10 Score=97.36 Aligned_cols=68 Identities=34% Similarity=0.555 Sum_probs=62.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHHH-HHhCCCCCcHHHHHHHhhCCCCCChHH
Q psy16119 3 YIRYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNH-MMQFGSSVPWNEALFTATGESRLDANA 81 (151)
Q Consensus 3 YiRYFls~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~~-mm~lGsSkpW~eaL~~~TG~~~msa~a 81 (151)
|+.|++|.|+.+||++++|+..+ |+..++++|+.|++ +|+.|+|++|.|+++.+||+. +|+++
T Consensus 297 yy~Y~~~~v~a~qi~~~~~~~~~---------------~~~~~~~~g~~l~~~il~~G~s~~~~el~~~~~G~~-~~~~a 360 (365)
T cd06258 297 YYGYLLAEMLASQLRATFKKKVG---------------YLTDNPEAGPRLREHILRPGNSEPWKELLKRATGED-PNADA 360 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCC---------------CCCCCHHHHHHHHHHHccCcCCcCHHHHHHHHcCCC-CChHH
Confidence 88999999999999999998432 45678999999999 999999999999999999965 99999
Q ss_pred HHHHH
Q psy16119 82 LREYF 86 (151)
Q Consensus 82 LLeYF 86 (151)
+++||
T Consensus 361 ~~~~~ 365 (365)
T cd06258 361 FLDHF 365 (365)
T ss_pred HHhcC
Confidence 99997
No 5
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=97.33 E-value=0.0012 Score=60.16 Aligned_cols=71 Identities=23% Similarity=0.259 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHHHHHhCCCCCcHHHHHHHhhCCC-CCChHH
Q psy16119 3 YIRYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSSVPWNEALFTATGES-RLDANA 81 (151)
Q Consensus 3 YiRYFls~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~~mm~lGsSkpW~eaL~~~TG~~-~msa~a 81 (151)
|+.|.+|.++.+|||+..=+ +.+.+-+.-.++|+.|+|+++.|+++.+ |.+ .++.++
T Consensus 476 yy~Y~~a~~~a~~l~~~~~~---------------------~~~~~~~~Y~~~L~~Ggs~~~~ell~~a-Gid~~f~~~~ 533 (549)
T TIGR02289 476 YIEYTIAQIGALQIYKIYKE---------------------DPEKALKDYKKLCSAGGSQSFLELYETA-GLTFPFSEER 533 (549)
T ss_pred chhhHHHHHHHHHHHHHHHh---------------------CHHHHHHHHHHHHhccCCcCHHHHHHHh-CCCCCCCccc
Confidence 78999999999999976421 2245667889999999999999999996 654 569999
Q ss_pred HHHHHHHHHHHHHH
Q psy16119 82 LREYFRPLEDWLVA 95 (151)
Q Consensus 82 LLeYF~PL~~WL~~ 95 (151)
|.+.|+++..||++
T Consensus 534 ~~~~~~~~~~~l~~ 547 (549)
T TIGR02289 534 IKEIVSFVEKLLEE 547 (549)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999974
No 6
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.
Probab=97.05 E-value=0.0033 Score=53.91 Aligned_cols=60 Identities=15% Similarity=0.085 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHHHHHhCCCCCcHHHHHHHhhCCCCCChHHH
Q psy16119 3 YIRYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSSVPWNEALFTATGESRLDANAL 82 (151)
Q Consensus 3 YiRYFls~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~~mm~lGsSkpW~eaL~~~TG~~~msa~aL 82 (151)
|+.|.+|.|+.+||++..|+. .+.+++..+++|+.|+|+++.|+|+.+ |.+..+.+.+
T Consensus 362 yy~Y~~g~~~a~~l~~~~~~~---------------------~~~~~~~y~~~L~~Ggs~~~~ell~~~-g~d~~~~~~~ 419 (427)
T cd06459 362 VYPYAFGQLAALALYAKYKED---------------------GEGAVEKYLELLKAGGSKSPLELLKKA-GVDLTSPDFW 419 (427)
T ss_pred ChHHHHHHHHHHHHHHHHHHc---------------------CccHHHHHHHHHHccCCCCHHHHHHHc-CcCCCChHHH
Confidence 679999999999999999972 135678888999999999999999976 6666777655
Q ss_pred HH
Q psy16119 83 RE 84 (151)
Q Consensus 83 Le 84 (151)
.+
T Consensus 420 ~~ 421 (427)
T cd06459 420 EE 421 (427)
T ss_pred HH
Confidence 44
No 7
>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from E. coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). Oligopeptidase A (OpdA) may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala.
Probab=95.93 E-value=0.043 Score=49.06 Aligned_cols=66 Identities=18% Similarity=0.153 Sum_probs=56.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHH-HHHhCCCCCcHHHHHHHhhCCCCCChH
Q psy16119 2 EYIRYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLN-HMMQFGSSVPWNEALFTATGESRLDAN 80 (151)
Q Consensus 2 pYiRYFls~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~-~mm~lGsSkpW~eaL~~~TG~~~msa~ 80 (151)
-|..|..|.+|--.++.+.-+ . ++ -+.++|++++ ++|+.|+|++=.++++.++| |+.|.+
T Consensus 354 ~YYsYlws~vla~di~~~f~~-~----------~~-------~~~~~G~~~r~~iL~~Ggs~~~~e~~~~F~G-r~p~~~ 414 (422)
T cd06456 354 GYYSYKWAEVLDADAFSAFEE-E----------GI-------FNRETGRRFRDTILSKGGSRDPMELFRAFRG-RDPSIE 414 (422)
T ss_pred hhHHHHHHHHHHHHHHHHHHh-c----------CC-------CCHHHHHHHHHHHhhcCCCcCHHHHHHHhcC-CCCChH
Confidence 378899999999999977653 2 22 3479999998 89999999999999999999 789999
Q ss_pred HHHHHH
Q psy16119 81 ALREYF 86 (151)
Q Consensus 81 aLLeYF 86 (151)
|+|++.
T Consensus 415 a~l~~~ 420 (422)
T cd06456 415 ALLRRR 420 (422)
T ss_pred HHHHHc
Confidence 999864
No 8
>PRK10280 dipeptidyl carboxypeptidase II; Provisional
Probab=93.57 E-value=0.4 Score=45.73 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHH-HHHhCCCCCcHHHHHHHhhCCCCCChHH
Q psy16119 3 YIRYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLN-HMMQFGSSVPWNEALFTATGESRLDANA 81 (151)
Q Consensus 3 YiRYFls~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~-~mm~lGsSkpW~eaL~~~TG~~~msa~a 81 (151)
|..|..|.||---++.+..+ . +|+ ++++|++++ .+|+.|.|+|=.++++.+.| |+-+.+|
T Consensus 612 YYsYlwaevlaaD~f~~f~~-~----------g~~-------n~~~G~~fr~~iL~~GGs~d~~~~~~~FlG-R~P~~~a 672 (681)
T PRK10280 612 YYAYLWTQMLADDGYQWFVE-Q----------GGL-------TRENGQRFREAILSRGNSTDLERLYRQWRG-HAPQIMP 672 (681)
T ss_pred hHHHHHHHHHHHHHHHHHHh-c----------CCC-------CHHHHHHHHHHHhhcCCCcCHHHHHHHhcC-CCCChHH
Confidence 88999999999999977764 1 343 489999995 59999999999999999999 6789999
Q ss_pred HHHH
Q psy16119 82 LREY 85 (151)
Q Consensus 82 LLeY 85 (151)
||+.
T Consensus 673 lL~~ 676 (681)
T PRK10280 673 MLQH 676 (681)
T ss_pred HHHh
Confidence 9864
No 9
>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24.15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasom
Probab=93.46 E-value=0.38 Score=43.27 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=52.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHH-HHHhCCCCCcHHHHHHHhhCCCCCChH
Q psy16119 2 EYIRYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLN-HMMQFGSSVPWNEALFTATGESRLDAN 80 (151)
Q Consensus 2 pYiRYFls~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~-~mm~lGsSkpW~eaL~~~TG~~~msa~ 80 (151)
.|..|-.|.+|--.++...-+ . +|+ ++++|+.++ ++|+.|+|++-.++|+.++| ++++.+
T Consensus 406 ~yY~Y~~a~~la~~~~~~~~~-~----------~~~-------~~~~g~~y~~~~L~~Ggs~~p~ell~~flG-r~~~~~ 466 (472)
T cd06455 406 GYYGYLWSEVFAADMFSSFFK-D----------GLL-------NPEVGLRYRDTVLAPGGSKDAADMLKDFLG-REPNND 466 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHh-c----------CCC-------CHHHHHHHHHHHhcCcCCcCHHHHHHHHhC-CCCChh
Confidence 477888888888888876543 1 232 478999998 59999999999999999999 679999
Q ss_pred HHHHH
Q psy16119 81 ALREY 85 (151)
Q Consensus 81 aLLeY 85 (151)
+++++
T Consensus 467 a~~~~ 471 (472)
T cd06455 467 AFLKS 471 (472)
T ss_pred HHhhc
Confidence 88764
No 10
>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site. This family belongs to family M3 of the peptidase classification.; InterPro: IPR001567 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M3 (clan MA(E)), subfamilies M3A and M3B. The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The Thimet oligopeptidase family, is a large family of archaeal, bacterial and eukaryotic oligopeptidases that cleave medium sized peptides. The group contains: mitochondrial intermediate peptidase (3.4.24.59 from EC) Neurolysin, mitochondrial precursor, (3.4.24.16 from EC) Thimet oligopeptidase (3.4.24.15 from EC) Dipeptidyl carboxypeptidase (3.4.15.5 from EC) Oligopeptidase A (3.4.24.70 from EC) Oligoendopeptidase F ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QR4_B 3CE2_A 1Y79_1 2H1J_A 2H1N_A 2O36_A 1S4B_P 2O3E_A 1I1I_P.
Probab=93.21 E-value=0.31 Score=42.96 Aligned_cols=66 Identities=20% Similarity=0.298 Sum_probs=52.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHH-HHHhCCCCCcHHHHHHHhhCCCCCChH
Q psy16119 2 EYIRYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLN-HMMQFGSSVPWNEALFTATGESRLDAN 80 (151)
Q Consensus 2 pYiRYFls~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~-~mm~lGsSkpW~eaL~~~TG~~~msa~ 80 (151)
+|..|-.|.++--+++...=+ . +|+ ++++|..+. ++|+.|+|++..++|+.+.| +..+.+
T Consensus 390 ~yY~Y~ya~~~a~~~~~~~~~-~----------~~~-------n~~~g~~~~~~~L~~Ggs~~~~e~l~~~~g-~~~~~~ 450 (458)
T PF01432_consen 390 GYYSYLYAEVLAADLFSQFFE-E----------DPL-------NRETGRRFYKEFLSPGGSKDPLELLKKFLG-REPSPD 450 (458)
T ss_dssp TTTCHHHHHHHHHHHHHHHHH-C----------HTT-------CHHHHHHHHHHHCTTTTSS-HHHHHHHCCS-STTSSH
T ss_pred CCchhHHHHHHHHHHHHHHHh-c----------CCc-------chHHHHHHHHHHhcCCCCCCHHHHHHHhCC-CCCChH
Confidence 788899999999999998665 1 233 267777554 89999999999999999976 578888
Q ss_pred HHHHHH
Q psy16119 81 ALREYF 86 (151)
Q Consensus 81 aLLeYF 86 (151)
++++-+
T Consensus 451 ~~~~~~ 456 (458)
T PF01432_consen 451 AFLKAL 456 (458)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 887754
No 11
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases. M32 includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). Novel peptidases from protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, are the first eukaryotic M32 enzymes identified so far, thus making these enzymes an attractive potential target for drug development against these o
Probab=93.15 E-value=0.33 Score=43.78 Aligned_cols=73 Identities=26% Similarity=0.284 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHH-HHHHhCCCCCcHHHHHHHhhCCCCCChHHHH
Q psy16119 5 RYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLL-NHMMQFGSSVPWNEALFTATGESRLDANALR 83 (151)
Q Consensus 5 RYFls~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L-~~mm~lGsSkpW~eaL~~~TG~~~msa~aLL 83 (151)
.|-+|.++--||+.++.+.-.... .-+-+-||- ...+-| .++.+.|++..+.|.|+..||+ .|++++.+
T Consensus 319 tYalG~l~Aaql~~~~~~~~~~~~------~~i~~g~f~---~~~~wL~e~i~~~G~~~~p~eLl~~atG~-~l~~~~f~ 388 (396)
T cd06460 319 TYTLGNLYAAQLFAAAKKDLPDID------EQIERGDFS---PLLEWLRENIHQHGSRYSPDELLKKATGE-PLNPEYFL 388 (396)
T ss_pred hhHHHHHHHHHHHHHHHHhCccHH------HHHhccChH---HHHHHHHHHHHhccCCCCHHHHHHHHhCC-CCChHHHH
Confidence 467999999999999998543210 011122220 111111 2589999999999999999998 69999999
Q ss_pred HHHH
Q psy16119 84 EYFR 87 (151)
Q Consensus 84 eYF~ 87 (151)
+|.+
T Consensus 389 ~yL~ 392 (396)
T cd06460 389 EYLE 392 (396)
T ss_pred HHHH
Confidence 8864
No 12
>PRK10911 oligopeptidase A; Provisional
Probab=92.77 E-value=0.64 Score=44.27 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=55.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHH-HHHhCCCCCcHHHHHHHhhCCCCCChH
Q psy16119 2 EYIRYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLN-HMMQFGSSVPWNEALFTATGESRLDAN 80 (151)
Q Consensus 2 pYiRYFls~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~-~mm~lGsSkpW~eaL~~~TG~~~msa~ 80 (151)
-|..|-.|.||---+|....+ . +|+ ++++|+.++ ++|+.|+|++=.++++.+.| |+-|.+
T Consensus 610 gYYsYlwa~vla~d~~~~f~~-~----------g~~-------~~~~g~~~r~~iL~~Ggs~~p~~~~~~F~G-R~P~~~ 670 (680)
T PRK10911 610 GYYSYLWADVLAADAFSRFEE-E----------GIF-------NRETGQSFLDNILSRGGSEEPMELFKRFRG-REPQLD 670 (680)
T ss_pred chHHHHHHHHHHHHHHHHHHh-c----------CCC-------CHHHHHHHHHHHHhCcCCcCHHHHHHHhcC-CCCChH
Confidence 378899999998888877664 2 333 479999997 99999999999999999999 678999
Q ss_pred HHHHHH
Q psy16119 81 ALREYF 86 (151)
Q Consensus 81 aLLeYF 86 (151)
|||+..
T Consensus 671 all~~~ 676 (680)
T PRK10911 671 AMLEHY 676 (680)
T ss_pred HHHHhc
Confidence 998753
No 13
>cd06457 M3A_MIP Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3.4.24.59) belongs to the widespread subfamily M3A, that show similarity to the Thimet oligopeptidase (TOP). It is one of three peptidases responsible for the proteolytic processing of both, nuclear and mitochondrial encoded precursor polypeptides targeted to the various subcompartments of the mitochondria. It cleaves intermediate-size proteins initially processed by mitochondrial processing peptidase (MPP) to yield a processing intermediate with a typical N-terminal octapeptide that is sequentially cleaved by MIP to mature-size protein. MIP cleaves precursor proteins of respiratory components, including subunits of the electron transport chain and tri-carboxylic acid cycle enzymes, and components of the mitochondrial genetic machinery, including ribosomal proteins, translation factors, and proteins required for mitochondrial DNA metabolism. It has been suggested that the human MIP (HMIP polypeptide; gene symbo
Probab=87.48 E-value=1.7 Score=39.12 Aligned_cols=60 Identities=25% Similarity=0.318 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHH-HHHhCCCCCcHHHHHHHhhCCCCCChHH
Q psy16119 3 YIRYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLN-HMMQFGSSVPWNEALFTATGESRLDANA 81 (151)
Q Consensus 3 YiRYFls~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~-~mm~lGsSkpW~eaL~~~TG~~~msa~a 81 (151)
|..|-.|.||--.++...-+. ++ -++++|+.++ ++|+.|+|++=.++++.++|. +++.+.
T Consensus 393 YYsYl~a~vla~di~~~~f~~-----------~~-------~n~~~g~~y~~~iL~~Ggs~~p~e~l~~flGr-dp~~~~ 453 (458)
T cd06457 393 YYSYLFDRAIASKIWQKLFAA-----------DP-------LSREAGERLREELLKHGGGKDPWELLAGVLGK-PPLVKG 453 (458)
T ss_pred chHHHHHHHHHHHHHHHHHHh-----------CC-------CCHHHHHHHHHHHccCCCCcCHHHHHHHHcCC-CCCCCc
Confidence 778999999999988766541 22 2468999998 599999999999999999995 455543
No 14
>KOG2090|consensus
Probab=84.79 E-value=3.5 Score=40.01 Aligned_cols=60 Identities=20% Similarity=0.329 Sum_probs=50.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHH-HHHHhCCCCCcHHHHHHHhhCCCCCChHH
Q psy16119 3 YIRYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLL-NHMMQFGSSVPWNEALFTATGESRLDANA 81 (151)
Q Consensus 3 YiRYFls~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L-~~mm~lGsSkpW~eaL~~~TG~~~msa~a 81 (151)
|..|.++..+-==|.+++|+. .|+ |.+||+++ ++|++.|.+++=.+.++.++|.+ |.++.
T Consensus 624 YYSYL~~r~~AS~IWq~~Fe~-----------dPf-------sR~aGek~r~eil~hGG~~~P~~lva~~L~~~-~~~~g 684 (704)
T KOG2090|consen 624 YYSYLFARAIASLIWQQLFEN-----------DPF-------SRKAGEKFRKEILKHGGGRDPAELVADILGKP-PLENG 684 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----------Ccc-------chhhhHHHHHHHHHhcCCCChHHHHHHHhcCC-CCccc
Confidence 889999999999999999971 344 78999999 89999999998888999998964 54443
No 15
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=78.45 E-value=4.5 Score=37.61 Aligned_cols=73 Identities=27% Similarity=0.367 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHH-HHHhCCCCCcHHHHHHHhhCCCCCChHHHH
Q psy16119 5 RYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLN-HMMQFGSSVPWNEALFTATGESRLDANALR 83 (151)
Q Consensus 5 RYFls~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~-~mm~lGsSkpW~eaL~~~TG~~~msa~aLL 83 (151)
.|-||.|+-=|||.++.+.-+... .-+-+-|| ...-+-|+ ++=+.|+..+..|.|+..||+ .+|+++.+
T Consensus 418 tY~LG~~~AaQl~~~~~~~~pd~~------~~i~~G~f---~~i~~WL~e~Ih~~G~~y~~~eLl~~aTGe-~l~~~~~~ 487 (494)
T PF02074_consen 418 TYALGNIYAAQLFAAMKKDIPDLD------EQIAKGDF---SPIRDWLRENIHQYGSRYTPDELLKKATGE-PLNPEYFI 487 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHH------HHHHTT-----HHHHHHHHHHTGGGTTSS-HHHHHHHHHSS-S--THHHH
T ss_pred hhHHHHHHHHHHHHHHHHHccCHH------HHHHcCCh---HHHHHHHHHHHHHhccCCCHHHHHHHHhCC-CCCHHHHH
Confidence 477999999999999998664210 00001111 11222232 455789999999999999998 59999999
Q ss_pred HHHH
Q psy16119 84 EYFR 87 (151)
Q Consensus 84 eYF~ 87 (151)
+|.+
T Consensus 488 ~YL~ 491 (494)
T PF02074_consen 488 DYLK 491 (494)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 16
>KOG2089|consensus
Probab=74.83 E-value=13 Score=36.37 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=57.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHHH-HHhCCCCCcHHHHHHHhhCCCCCChH
Q psy16119 2 EYIRYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNH-MMQFGSSVPWNEALFTATGESRLDAN 80 (151)
Q Consensus 2 pYiRYFls~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~~-mm~lGsSkpW~eaL~~~TG~~~msa~ 80 (151)
-|.+|.-|.|+---+|...-+..|+ -+.+++|..+++ +|+.|+|++=.|+++.+.| |+=|++
T Consensus 638 ~yY~yLWsEv~aaDif~t~fe~~g~----------------~N~~~~G~ryR~tiLa~GG~~~~~e~f~~FlG-RePS~~ 700 (718)
T KOG2089|consen 638 GYYSYLWSEVLAADIFSTFFEQEGE----------------DNIKEVGMRYRNTILAPGGGKDPMEVFKRFLG-REPSQE 700 (718)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC----------------ccHHHHHHHHHHhhhcCCCCccHHHHHHHhhC-CCCChh
Confidence 3789999999999999877665553 255699999986 6899999999999999999 689999
Q ss_pred HHHHHHH
Q psy16119 81 ALREYFR 87 (151)
Q Consensus 81 aLLeYF~ 87 (151)
|+|.=..
T Consensus 701 Afl~s~g 707 (718)
T KOG2089|consen 701 AFLKSLG 707 (718)
T ss_pred HHHHhhc
Confidence 9987544
No 17
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=71.96 E-value=4.1 Score=30.22 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy16119 83 REYFRPLEDWLVAENLRT 100 (151)
Q Consensus 83 LeYF~PL~~WL~~eN~~~ 100 (151)
.+||+|+.+||++--+..
T Consensus 24 ~~Fy~Pi~~wl~~Yl~~~ 41 (99)
T PF09345_consen 24 FAFYQPILDWLEAYLAEP 41 (99)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 489999999999877643
No 18
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family. The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.
Probab=70.26 E-value=47 Score=30.70 Aligned_cols=70 Identities=9% Similarity=0.020 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHHHHHhCCCCCcHHHHHHHhhCCCCCChHHHH
Q psy16119 4 IRYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSSVPWNEALFTATGESRLDANALR 83 (151)
Q Consensus 4 iRYFls~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~~mm~lGsSkpW~eaL~~~TG~~~msa~aLL 83 (151)
+.|-+|.++--||+....+ .+ + .+-....++|+.|+|++=.++|+. +|.+-=+.+++.
T Consensus 514 y~Y~~g~~~a~~l~~~~~~-~~----------~----------~~~~~y~~~L~~Ggs~~p~ell~~-~G~d~~~~~~~~ 571 (587)
T TIGR02290 514 YPYTFGYLFVLGLYAKYRE-EG----------E----------SFVPKYIALLRDTGSMTPEELVKK-FGFDLTSPDFWQ 571 (587)
T ss_pred hhhHHHHHHHHHHHHHHHH-CC----------h----------hHHHHHHHHHHCcCCCCHHHHHHH-hCcCCCChHHHH
Confidence 5788999999999988765 11 0 111335699999999999999999 796544445555
Q ss_pred HHHHHHHHHHHH
Q psy16119 84 EYFRPLEDWLVA 95 (151)
Q Consensus 84 eYF~PL~~WL~~ 95 (151)
+=++=+..|+++
T Consensus 572 ~~~~~~~~~v~e 583 (587)
T TIGR02290 572 KGIDVIEEKIDE 583 (587)
T ss_pred HHHHHHHHHHHH
Confidence 666666666653
No 19
>COG0339 Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism]
Probab=65.46 E-value=38 Score=33.20 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHH-HHHhCCCCCcHHHHHHHhhCCCCCChHH
Q psy16119 3 YIRYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLN-HMMQFGSSVPWNEALFTATGESRLDANA 81 (151)
Q Consensus 3 YiRYFls~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~-~mm~lGsSkpW~eaL~~~TG~~~msa~a 81 (151)
|..|.-+.||-==-|.+.-+ . +|+ ++++|++++ .+|+.|.|++=.+.++++.|. +-+.+|
T Consensus 614 YYSY~WaeVLsaDafa~Fee-~----------g~~-------~~e~G~rfrd~ILs~GGS~dp~e~f~~frGr-ep~~da 674 (683)
T COG0339 614 YYSYLWAEVLSADAFAAFEE-E----------GPF-------NRETGQRFRDAILSRGGSRDPMELFKAFRGR-EPSIDA 674 (683)
T ss_pred hHHHHHHHHHhhHHHHHHHh-c----------CCC-------CHHHHHHHHHHHHhccCCcCHHHHHHHHhcC-CCChhH
Confidence 78899999997666666655 2 333 277887776 589999999999999999995 788888
Q ss_pred HHHH
Q psy16119 82 LREY 85 (151)
Q Consensus 82 LLeY 85 (151)
||+.
T Consensus 675 lLr~ 678 (683)
T COG0339 675 LLRH 678 (683)
T ss_pred HHHh
Confidence 9874
No 20
>KOG2794|consensus
Probab=61.99 E-value=1.8 Score=38.49 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=48.3
Q ss_pred CCCccccCCCCHHHhHHHHHHHhCCCCCcHHHHHHHhhCCCCCChHHHHHHHHH-HHHHHHHHH
Q psy16119 35 KPLFKCDIYRSKEAGVLLNHMMQFGSSVPWNEALFTATGESRLDANALREYFRP-LEDWLVAEN 97 (151)
Q Consensus 35 ~pLh~CDiy~Sk~AG~~L~~mm~lGsSkpW~eaL~~~TG~~~msa~aLLeYF~P-L~~WL~~eN 97 (151)
-|+..|-..|.- ..|...-..|.-.-=.-+||.++|-++--|+-+|.||.| |.+||..+|
T Consensus 280 lpi~ayqVSGEy---aMi~aaa~~g~~Dlk~~vmEsm~~frRAGAdiIlTYfapq~l~~L~~e~ 340 (340)
T KOG2794|consen 280 LPIAAYQVSGEY---AMIKAAALAGMFDLKKVVMESMLGFRRAGADIILTYFAPQLLTWLCGEN 340 (340)
T ss_pred CceEEEEecchH---HHHHHHHhcccccHHHHHHHHHHHHHhcCCcEEEeeccHHHHHHhhcCC
Confidence 566667666552 456777777887777889999999999999999999999 789998775
No 21
>cd02049 bacterial_SERPIN SERine Proteinase INhibitors (serpins), prokaryotic subgroup. Little information about specific functions is available for this subgroup, most likely they are inhibitory members of the serpin superfamily. In general, serpins exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors.
Probab=59.85 E-value=56 Score=27.92 Aligned_cols=72 Identities=21% Similarity=0.237 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHHHHHhCCCCCcHHHHHHHhhCCCCCChHHHHHHHHHHHH
Q psy16119 12 LQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSSVPWNEALFTATGESRLDANALREYFRPLED 91 (151)
Q Consensus 12 LQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~~mm~lGsSkpW~eaL~~~TG~~~msa~aLLeYF~PL~~ 91 (151)
+-|++|++++... ...++-=|...-.....|+.+|+.-.=++-|...+|-...+...+.+.|+.|..
T Consensus 8 F~~~l~~~~~~~~-------------~~~N~v~SP~si~~~L~~l~~Ga~g~T~~ql~~~L~~~~~~~~~~~~~~~~l~~ 74 (364)
T cd02049 8 FGFKLFSELNKED-------------VEKNIFISPLSIALALSMTYNGADGTTRKEMLKALGLDNIDLEDLNSALATLMD 74 (364)
T ss_pred HHHHHHHHHhhcC-------------CCCCEEECHHHHHHHHHHHhhhcCchHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 5678999988521 234666677777888999999999998999999988776677789999999999
Q ss_pred HHHHH
Q psy16119 92 WLVAE 96 (151)
Q Consensus 92 WL~~e 96 (151)
.|...
T Consensus 75 ~l~~~ 79 (364)
T cd02049 75 QLNTH 79 (364)
T ss_pred HHhcC
Confidence 98653
No 22
>PF00079 Serpin: Serpin (serine protease inhibitor); InterPro: IPR023796 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Serpins (SERine Proteinase INhibitors) [, , ] belong to MEROPS inhibitor family I4, clan ID. Serpins are proteins that are primarily known as irreversible serine protease inhibitors active against S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO) and C14 (IPR002398 from INTERPRO) peptidases. There are both extra- and intra-cellular serpins, which are found in all groups of organisms with the notable exception of fungi [, ]. In contrast to "rigid" proteinase inhibitors, such as those of the Kunitz or Kazal families, the serpins are metastable proteins (active-state proteins) which interact with their substrate and irreversibly trap the acyl intermediate as a result of a major conformational change []; they are best described as suicide substrate inhibitors. The common structure of these proteins is a multi-domain fold containing a bundle of 8 or 9 alpha helices and a beta sandwich formed by 3 beta sheets. The reactive centre loop (RCL) is found in the C-terminal part of these proteins. Serpins and their homologues are a group of high molecular weight (40 to 50 kDa) structurally related proteins involved in a number of fundamental biological processes such as blood coagulation, complement activation, fibrinolysis, angiogenesis, inflammation, tumour suppression and hormone transport. All known serpins have been classified into 16 clades and 10 orphan sequences; the vertebrate serpins can be conveniently classified into six sub-groups []. In human plasma they represent approximately 2% of the total protein, of which 70% is alpha-1-antitrypsin. On the basis of strong sequence similarities, a number of proteins with no known inhibitory activity also belong to this family, these include: angiotensinogen, corticosteroid-binding globulin and thyroxin-binding globulin []. This entry represents the structural domain of serpins. It consists of a cluster of helices and a beta-sandwich.; PDB: 3PZF_A 3B9F_I 1MTP_A 1SNG_A 1ANT_I 2ZNH_B 1BR8_I 1SR5_A 1E03_L 1AZX_L ....
Probab=58.02 E-value=67 Score=26.94 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHHHHHhCCCCCcHHHHHHHhhCCCCCChHHHHHHHHHHHH
Q psy16119 12 LQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSSVPWNEALFTATGESRLDANALREYFRPLED 91 (151)
Q Consensus 12 LQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~~mm~lGsSkpW~eaL~~~TG~~~msa~aLLeYF~PL~~ 91 (151)
+-++||++++.... .-++-=|.-.-.....|+..|++-.=.+-|..++|-...+.+.+.++|+.|..
T Consensus 6 f~~~L~~~~~~~~~-------------~~N~v~SP~si~~~L~~l~~ga~g~T~~el~~~L~~~~~~~~~~~~~~~~l~~ 72 (371)
T PF00079_consen 6 FALKLFKALSKSNP-------------DENFVFSPLSIYSALAMLYLGASGETRKELRKVLGLPGSDDEEIHEYFKKLLQ 72 (371)
T ss_dssp HHHHHHHHHHHHST-------------TSSEEE-HHHHHHHHHHHHHTSCHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCC-------------CCcEEEChHHHHHHHHHHHhhccCCHHHHHHHHhhhcccccccchhhhhhhhh
Confidence 45789999998552 33455677677778899999999998999999999888999999999999999
Q ss_pred HHHH
Q psy16119 92 WLVA 95 (151)
Q Consensus 92 WL~~ 95 (151)
.|..
T Consensus 73 ~l~~ 76 (371)
T PF00079_consen 73 SLNS 76 (371)
T ss_dssp HHHS
T ss_pred hhhc
Confidence 9976
No 23
>cd02052 PEDF Pigment epithelium-derived factor (PEDF)_like. PEDF is non-inhibitory member of the Serpin superfamily. It exhibits neurotrophic, neuroprotective and antiangiogenic properties and is widely expressed in the developing and adult nervous systems. This subgroup corresponds to clade F1 of the serpin superfamily.
Probab=51.02 E-value=85 Score=27.29 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHHHHHhCCCCCcHHHHHHHhhCCCCCChHHHHHHHHHHH
Q psy16119 11 ILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSSVPWNEALFTATGESRLDANALREYFRPLE 90 (151)
Q Consensus 11 ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~~mm~lGsSkpW~eaL~~~TG~~~msa~aLLeYF~PL~ 90 (151)
-+.+.||++++.... .++|-=|...-.....|+.+|+.-.=.+-|...+|-...+...+.++|+-|.
T Consensus 21 ~Fa~~l~~~l~~~~~-------------~~Nvv~SP~si~~~L~ml~~GA~g~T~~ql~~~L~~~~~~~~~~~~~~~~l~ 87 (374)
T cd02052 21 NFGYDLYRQQASRDP-------------TANVFLSPLSIATALSQLSLGAGERTESQIHRALYYDLLNDPELHDTYKDLL 87 (374)
T ss_pred HHHHHHHHHHhccCC-------------CCcEEEChHHHHHHHHHHHhccChHHHHHHHHHhCCCCCChHHHHHHHHHHH
Confidence 356789999986321 3577778888888899999999988888888888865556667899999999
Q ss_pred HHHHH
Q psy16119 91 DWLVA 95 (151)
Q Consensus 91 ~WL~~ 95 (151)
.+|..
T Consensus 88 ~~l~~ 92 (374)
T cd02052 88 ASLTA 92 (374)
T ss_pred HHhcC
Confidence 98853
No 24
>cd02043 plant_SERPIN SERine Proteinase INhibitors (serpins), plant specific subgroup. It has been suggested that plant serpins play a role in defense against insect predators. This subgroup corresponds to clade P of the serpin superfamily. In general, serpins exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones.
Probab=48.61 E-value=1e+02 Score=26.57 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHHHHHhCCCCCcHHHHHHHhhCCCCCChHHHHHHHHHHHH
Q psy16119 12 LQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSSVPWNEALFTATGESRLDANALREYFRPLED 91 (151)
Q Consensus 12 LQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~~mm~lGsSkpW~eaL~~~TG~~~msa~aLLeYF~PL~~ 91 (151)
+-++||+.++...+. ..+|-=|...=.....|+.+|+.-.=++-|...+|-. +.+.+.++|+.|..
T Consensus 6 ~~~~l~~~~~~~~~~------------~~N~v~SP~si~~aL~ml~~GA~g~T~~ql~~~L~~~--~~~~~~~~~~~l~~ 71 (381)
T cd02043 6 VAMRLSGHVAAAAGK------------GSNVIFSPLSINVALSLVAAGARGETLDQLLSFLGSP--STDELHAVAASIVD 71 (381)
T ss_pred HHHHHHHHHhccCCC------------CCcEEECHHHHHHHHHHHhcccCCcHHHHHHHHhCCC--ChHHHHHHHHHHHH
Confidence 468999999987642 4566677777788899999999988888888888764 34568889988887
Q ss_pred HHHH
Q psy16119 92 WLVA 95 (151)
Q Consensus 92 WL~~ 95 (151)
.+..
T Consensus 72 ~~~~ 75 (381)
T cd02043 72 LVLA 75 (381)
T ss_pred HHhh
Confidence 7653
No 25
>cd00172 SERPIN SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia.
Probab=44.99 E-value=1.4e+02 Score=25.26 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHHHHHhCCCCCcHHHHHHHhhCCCCCChHHHHHHHHHHHH
Q psy16119 12 LQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSSVPWNEALFTATGESRLDANALREYFRPLED 91 (151)
Q Consensus 12 LQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~~mm~lGsSkpW~eaL~~~TG~~~msa~aLLeYF~PL~~ 91 (151)
+-|++|+++.... ...++-=|.-.=.....|+..|+.-.=++-|...+|-..++...+.+.|+-|.+
T Consensus 5 Fa~~l~~~~~~~~-------------~~~N~v~SP~si~~aL~~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~~ 71 (364)
T cd00172 5 FALDLYKQLAKSE-------------PDENVVFSPLSIASALALLYLGAGGETREQLRKVLGLPSLDDEDVHQAFKSLLS 71 (364)
T ss_pred HHHHHHHHHhhcC-------------CCCCEEEcHHHHHHHHHHHhhhcCchHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 4578899988632 134555677777778899999999988999999999776778889999999998
Q ss_pred HHHHH
Q psy16119 92 WLVAE 96 (151)
Q Consensus 92 WL~~e 96 (151)
.|...
T Consensus 72 ~l~~~ 76 (364)
T cd00172 72 SLKDS 76 (364)
T ss_pred HHhCC
Confidence 88644
No 26
>PF07841 DM4_12: DM4/DM12 family; InterPro: IPR006631 This domain of unknown function is found in primarily in Drosophila melanogaster (Fruit fly) proteins of unknown function.
Probab=43.10 E-value=37 Score=23.44 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHHHHHhCCCCCcH
Q psy16119 16 IHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSSVPW 64 (151)
Q Consensus 16 f~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~~mm~lGsSkpW 64 (151)
+.+++|+++- .|++ -++--.|++|+-++...++..=
T Consensus 23 llRaICE~~~---------~~~~----~~~gl~~ell~~ift~~~~~~~ 58 (82)
T PF07841_consen 23 LLRAICEAAQ---------RPLP----EHNGLLGELLHIIFTPSSSDDE 58 (82)
T ss_pred HHHHHHHHhh---------cccc----ccCcHHHHHHHHhcCCCccccc
Confidence 5799999875 4554 4666788999999988887654
No 27
>cd02056 alpha-1-antitrypsin_like alpha-1-antitrypsin_like. This family contains a variety of different members of clade A of the serpin superfamily. They include the classical serine proteinase inhibitors, alpha-1-antitrypsin and alpha-1-antichymotrypsin, protein C inhibitor, kallistatin, and noninhibitory serpins, like corticosteroid and thyroxin binding globulins. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia.
Probab=42.88 E-value=1.6e+02 Score=25.14 Aligned_cols=72 Identities=15% Similarity=0.190 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHHHHHhCCCCCcHHHHHHHhhCCC--CCChHHHHHHHHHH
Q psy16119 12 LQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSSVPWNEALFTATGES--RLDANALREYFRPL 89 (151)
Q Consensus 12 LQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~~mm~lGsSkpW~eaL~~~TG~~--~msa~aLLeYF~PL 89 (151)
+-+++|+.++... ...++-=|...-.....|+.+|+.-.=++-|...+|-. +++.+.+.+.|+-|
T Consensus 5 F~~~l~~~~~~~~-------------~~~N~v~SP~si~~~L~ml~~GA~g~T~~el~~~L~~~~~~~~~~~~~~~~~~l 71 (361)
T cd02056 5 FAFRLYRQLASES-------------PSKNIFFSPVSISTALAMLSLGARSSTLAQILEGLGFNLTEISEEEIHQGFQHL 71 (361)
T ss_pred HHHHHHHHHhhcC-------------CCCcEEEChHHHHHHHHHHHCccchhHHHHHHHHhcCCccCCCHHHHHHHHHHH
Confidence 4578899988631 14466667777788889999999988888888888753 56788899999999
Q ss_pred HHHHHHH
Q psy16119 90 EDWLVAE 96 (151)
Q Consensus 90 ~~WL~~e 96 (151)
..+|...
T Consensus 72 ~~~l~~~ 78 (361)
T cd02056 72 LHLLNQP 78 (361)
T ss_pred HHHHcCC
Confidence 9998543
No 28
>TIGR00181 pepF oligoendopeptidase F. This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (PubMed:8757883), with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis.
Probab=39.69 E-value=2.9e+02 Score=25.46 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=37.4
Q ss_pred HHhHHHHHHHhCCCCCcHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHH
Q psy16119 47 EAGVLLNHMMQFGSSVPWNEALFTATGESRLDANALREYFRPLEDWLVA 95 (151)
Q Consensus 47 ~AG~~L~~mm~lGsSkpW~eaL~~~TG~~~msa~aLLeYF~PL~~WL~~ 95 (151)
.+++..+++|+.|+|++=.|+|+.+ |.+-=+.+++.+=++=+.+|+++
T Consensus 540 ~~~~~Y~~~L~~Ggs~~p~ell~~~-Gvd~~~~~~~~~~~~~~~~~i~~ 587 (591)
T TIGR00181 540 GAVEKYLKFLKSGGSKYPLETLKIA-GVDLTKPQPWQAAINIFSDWIDE 587 (591)
T ss_pred cHHHHHHHHHhCcCCCCHHHHHHHc-CcCCCChHHHHHHHHHHHHHHHH
Confidence 3578888999999999999999986 87644556676766667777764
No 29
>cd02058 PAI-2 Plasminogen Activator Inhibitor-2 (PAI-2). PAI-2 is a serine protease inhibitor that belongs to the ov-serpin branch of the serpin superfamily. It is is an effective inhibitor of urinary plasminogen activator (urokinase or uPA) and is involved in cell differentiation, tissue growth and regeneration.
Probab=38.09 E-value=1.3e+02 Score=25.79 Aligned_cols=73 Identities=11% Similarity=0.093 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHHHHHhCCCCCcHHHHHHHhhCCCCC--ChHHHHHHHHHH
Q psy16119 12 LQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSSVPWNEALFTATGESRL--DANALREYFRPL 89 (151)
Q Consensus 12 LQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~~mm~lGsSkpW~eaL~~~TG~~~m--sa~aLLeYF~PL 89 (151)
+-+++|++++.... ..++-=|..+=.....|+.+|+.-.=.+-|..++|-... +...+..+|+.|
T Consensus 8 F~~~l~~~~~~~~~-------------~~N~v~SP~si~~aL~~l~~GA~g~T~~el~~~L~~~~~~~~~~~~~~~~~~l 74 (380)
T cd02058 8 FALNLFKKLAESSP-------------TKNIFFSPWSISSALAMVYLGAKGNTAAQMAKVLQFNEVGGNSEDIHSGFQSL 74 (380)
T ss_pred HHHHHHHHHhhcCC-------------CCcEEECHHHHHHHHHHHhcccCCcHHHHHHHHhCcCccccchHHHHHHHHHH
Confidence 44788999886321 235556766667788999999998888888888886543 346799999999
Q ss_pred HHHHHHHH
Q psy16119 90 EDWLVAEN 97 (151)
Q Consensus 90 ~~WL~~eN 97 (151)
..+|.+.+
T Consensus 75 ~~~~~~~~ 82 (380)
T cd02058 75 LSEINKPG 82 (380)
T ss_pred HHHHhCCC
Confidence 99886543
No 30
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=37.41 E-value=1.1e+02 Score=22.07 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=26.0
Q ss_pred HHHHHHHhCCCCCcHHHH---HHHhhCC---------CCCChHHHHHHHH
Q psy16119 50 VLLNHMMQFGSSVPWNEA---LFTATGE---------SRLDANALREYFR 87 (151)
Q Consensus 50 ~~L~~mm~lGsSkpW~ea---L~~~TG~---------~~msa~aLLeYF~ 87 (151)
+.|.-|++.|.+..=.+. +.+-.|+ ..|+++.|++|+.
T Consensus 6 eVL~mml~~~~~~t~~~L~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~ 55 (77)
T TIGR03853 6 EVLNLMLASGEPYTRESLKAAIEQKFGEDARFHTCSAEGMTADELLQFLL 55 (77)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHhCCCceEeecccccCCHHHHHHHHH
Confidence 567778899998754433 3444564 3699999988764
No 31
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism]
Probab=31.47 E-value=4.6e+02 Score=24.93 Aligned_cols=75 Identities=11% Similarity=0.073 Sum_probs=57.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHHHHHhCCCCCcHHHHHHHhhCCCCCChHHH
Q psy16119 3 YIRYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSSVPWNEALFTATGESRLDANAL 82 (151)
Q Consensus 3 YiRYFls~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~~mm~lGsSkpW~eaL~~~TG~~~msa~aL 82 (151)
++.|=+|.+.-.++|+..=.. +..+.-+.+.++|+.|+|.+=.++|+ ..|..--+.+++
T Consensus 520 vy~Ya~G~~~a~~l~~~~~~~--------------------~~~~~~~~y~~~Lk~GgS~~p~ell~-~~GiD~~~~~~~ 578 (598)
T COG1164 520 VYQYATGQLAALALYAKILTN--------------------DAEAFEKYYIAFLKSGGSKSPLELLK-IAGIDLTTPDPW 578 (598)
T ss_pred ehHhHHHHHHHHHHHHHHHhc--------------------cHHHHHHHHHHHHhCCCCCCHHHHHH-HcCCCCCCchHH
Confidence 356778888888888766541 12344466679999999999999999 779887777888
Q ss_pred HHHHHHHHHHHHHHHh
Q psy16119 83 REYFRPLEDWLVAENL 98 (151)
Q Consensus 83 LeYF~PL~~WL~~eN~ 98 (151)
.+=++=+..||++-.+
T Consensus 579 ~~a~~~~~~~ide~~~ 594 (598)
T COG1164 579 EEALAEFERLIDELEE 594 (598)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888876554
No 32
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=31.00 E-value=62 Score=22.20 Aligned_cols=41 Identities=27% Similarity=0.346 Sum_probs=25.9
Q ss_pred HHHhHHHHHHHhCCCCCcHHHHHHHhhCCCCCChHHHHHHH
Q psy16119 46 KEAGVLLNHMMQFGSSVPWNEALFTATGESRLDANALREYF 86 (151)
Q Consensus 46 k~AG~~L~~mm~lGsSkpW~eaL~~~TG~~~msa~aLLeYF 86 (151)
-+|+.++..+-.+|...+|.+.|+.+||-..=+.....+..
T Consensus 45 iAaAai~lA~~~~~~~~~~~~~l~~~t~~~~~~l~~c~~~i 85 (118)
T PF02984_consen 45 IAAAAILLARKILGKEPPWPESLEKLTGYDKEDLKECIELI 85 (118)
T ss_dssp HHHHHHHHHHHHHHSSTCSHHHHHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCCccchhhcCCCHHHHHHHHHHH
Confidence 45556666666667656999999999986433333333333
No 33
>COG2317 Zn-dependent carboxypeptidase [Amino acid transport and metabolism]
Probab=29.27 E-value=1.6e+02 Score=28.03 Aligned_cols=72 Identities=26% Similarity=0.320 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHH-HHHHhCCCCCcHHHHHHHhhCCCCCChHHHH
Q psy16119 5 RYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLL-NHMMQFGSSVPWNEALFTATGESRLDANALR 83 (151)
Q Consensus 5 RYFls~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L-~~mm~lGsSkpW~eaL~~~TG~~~msa~aLL 83 (151)
.|=++.|+-=|||.++-...+-.+ .-+-+-||- ...+-| .++=+.||-++=+|.++..||+ .++++.++
T Consensus 419 sYtlG~v~AAQ~~~a~~~~~p~~d------~~i~~gd~~---~i~~WL~e~ih~~Gs~~~p~eLi~~atGE-~lnp~y~i 488 (497)
T COG2317 419 TYTLGNVYAAQLYAAMKKDIPDVD------ALIAKGDFS---PIKNWLRENIHRHGSRYPPKELLKRATGE-ALNPEYFI 488 (497)
T ss_pred hhhhHHHHHHHHHHHHHhhcccHH------HHHHcCCcH---HHHHHHHHHHHHccCcCCcHHHHHHhhCC-cCCHHHHH
Confidence 467999999999999987554221 223333432 233444 3577899999999999999995 69998777
Q ss_pred HHH
Q psy16119 84 EYF 86 (151)
Q Consensus 84 eYF 86 (151)
+|-
T Consensus 489 ~yL 491 (497)
T COG2317 489 DYL 491 (497)
T ss_pred HHH
Confidence 664
No 34
>cd02057 maspin_like Maspin (mammary serine proteinase inhibitor), a member of the serpin superfamily, with a multitude of effects on cells and tissues at an assortment of developmental stages. Maspin has tumor suppressing activity against breast and prostate cancer. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones.
Probab=28.65 E-value=2.9e+02 Score=23.86 Aligned_cols=69 Identities=9% Similarity=0.010 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHHHHHhCCCCCcHHHHHHHhhCCCCCChHHHHHHHHHHH
Q psy16119 11 ILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSSVPWNEALFTATGESRLDANALREYFRPLE 90 (151)
Q Consensus 11 ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~~mm~lGsSkpW~eaL~~~TG~~~msa~aLLeYF~PL~ 90 (151)
-+.+++|++++... ...+|-=|...-.....|+.+|+.-.=.+-|...+|-.. ...+...|+-|.
T Consensus 7 ~F~~~l~~~~~~~~-------------~~~Nvv~SP~si~~aL~ml~~Ga~g~T~~el~~~L~~~~--~~~~~~~~~~~~ 71 (372)
T cd02057 7 AFAVDLFKKLCEKE-------------PTGNVVFSPICLSTSLALAQVGAKGDTANEIGKVLHFEN--VKDVPFGFQTVT 71 (372)
T ss_pred HHHHHHHHHHhccC-------------CCCcEEECHHHHHHHHHHHHhhcCCcHHHHHHHHhCCCC--hhHHHHHHHHHH
Confidence 35689999998632 135777788888899999999999888888888888653 345666777777
Q ss_pred HHHH
Q psy16119 91 DWLV 94 (151)
Q Consensus 91 ~WL~ 94 (151)
..+.
T Consensus 72 ~~~~ 75 (372)
T cd02057 72 SDVS 75 (372)
T ss_pred HHHh
Confidence 6654
No 35
>smart00076 IFabd Interferon alpha, beta and delta. Interferons produce antiviral and antiproliferative responses in cells. They are classified into five groups, all of them related but gamma-interferon.
Probab=28.36 E-value=80 Score=23.93 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy16119 79 ANALREYFRPLEDWLVAE 96 (151)
Q Consensus 79 a~aLLeYF~PL~~WL~~e 96 (151)
..+|..||+=+..+|++.
T Consensus 82 ~l~lk~YF~rI~~yLk~K 99 (117)
T smart00076 82 HLALRKYFQRIQLYLKEK 99 (117)
T ss_pred hHHHHHHHHHHHHHHHhC
Confidence 378999999999999854
No 36
>PF07580 Peptidase_M26_C: M26 IgA1-specific Metallo-endopeptidase C-terminal region; InterPro: IPR011505 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry represents metallopeptidases belonging to MEROPS peptidase family M26 (IgA1-specific metallopeptidase, clan MA). They are extracellular enzymes, which cleave mammalian IgA. They are only found in Gram-positive bacteria and are often found associated with IPR001899 from INTERPRO; they may be attached to the cell wall. This entry also contains the metallopeptidases ZmpB and ZmpC from Streptococcus pneumoniae. These metallopeptidases are thought to contribute to the inflammatory response to Streptococcal infection [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0005576 extracellular region, 0005618 cell wall
Probab=26.05 E-value=1.3e+02 Score=29.84 Aligned_cols=60 Identities=33% Similarity=0.532 Sum_probs=46.9
Q ss_pred CCCccccCCCCHHHhHHHHHHHhCCCCC-----------cHHHHHHHhhCCCCCChHHHHHHHHHH-------HHHHHHH
Q psy16119 35 KPLFKCDIYRSKEAGVLLNHMMQFGSSV-----------PWNEALFTATGESRLDANALREYFRPL-------EDWLVAE 96 (151)
Q Consensus 35 ~pLh~CDiy~Sk~AG~~L~~mm~lGsSk-----------pW~eaL~~~TG~~~msa~aLLeYF~PL-------~~WL~~e 96 (151)
--|++=||||. ....|-.+.++|+|. -..+.|...||.. +.-..|||+..| .+|+.++
T Consensus 136 lmlf~pdf~Gk--n~s~LD~LI~lG~s~~~~Lk~~n~~~~y~~~la~~tg~~--~L~~fLey~rklft~~~d~ndWFk~~ 211 (737)
T PF07580_consen 136 LMLFKPDFFGK--NVSVLDRLIELGSSGENNLKGKNNVDTYNEVLAKNTGKG--DLFDFLEYNRKLFTPDKDNNDWFKDA 211 (737)
T ss_pred hHhhCccccCC--CccHHHHHHHhcccccccccccCcHHHHHHHHhhccCch--hHHHHHHHHHHhcCCCCCHHHHHHHh
Confidence 35789999998 458899999999653 3577788888877 566799999887 6899866
Q ss_pred Hh
Q psy16119 97 NL 98 (151)
Q Consensus 97 N~ 98 (151)
-+
T Consensus 212 tk 213 (737)
T PF07580_consen 212 TK 213 (737)
T ss_pred Cc
Confidence 43
No 37
>cd00095 IFab Interferon alpha, beta. Includes also interferon omega and tau. Different from interferon gamma family. Type I interferons(alpha, beta) belong to the larger helical cytokine superfamily, which includes growth hormones, interleukins, several colony-stimulating factors and several other regulatory molecules. All function as regulators of cellular activty by interacting with cell-surface receptors and activating various signalling pathways. Interferons produce antiviral and antiproliferative responses in cells. Receptor specificity determines function of the various members of the family.
Probab=23.56 E-value=1e+02 Score=24.19 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=16.5
Q ss_pred ChHHHHHHHHHHHHHHHHH
Q psy16119 78 DANALREYFRPLEDWLVAE 96 (151)
Q Consensus 78 sa~aLLeYF~PL~~WL~~e 96 (151)
+...|..||+=+..+|++.
T Consensus 113 ~~l~lk~YF~rI~~yLk~K 131 (152)
T cd00095 113 THLHLRKYFQRIQLYLKEK 131 (152)
T ss_pred chhHHHHHHHHHHHHHHhC
Confidence 4688999999999999854
No 38
>PF12206 DUF3599: Domain of unknown function (DUF3599); InterPro: IPR024556 This family of bacterial proteins includes phage-like element PBSX protein xkdH from Bacillus subtilis. The function of the family is unknown.; PDB: 3F3B_A.
Probab=21.26 E-value=24 Score=27.48 Aligned_cols=9 Identities=44% Similarity=1.028 Sum_probs=5.5
Q ss_pred CccccCCCC
Q psy16119 37 LFKCDIYRS 45 (151)
Q Consensus 37 Lh~CDiy~S 45 (151)
-|+||||--
T Consensus 8 ~hrCDIYHl 16 (117)
T PF12206_consen 8 THRCDIYHL 16 (117)
T ss_dssp -EEEEEE--
T ss_pred hccccccch
Confidence 489999875
No 39
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=21.00 E-value=13 Score=33.32 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=36.0
Q ss_pred CCCccccCCCCHHHhHHHHHHHhCCCCCcHHHHHHHhhCCCCCChHHHHHHHHH-HHHHH
Q psy16119 35 KPLFKCDIYRSKEAGVLLNHMMQFGSSVPWNEALFTATGESRLDANALREYFRP-LEDWL 93 (151)
Q Consensus 35 ~pLh~CDiy~Sk~AG~~L~~mm~lGsSkpW~eaL~~~TG~~~msa~aLLeYF~P-L~~WL 93 (151)
-|+--....|.= ..|+..-+.|--..=+-+||.+++-++-=|+.|+.||.| +-+||
T Consensus 263 lPvaaYqVSGEY---aMikaAa~~G~~d~~~~~~Esl~~ikRAGAd~IiTY~A~~~a~wl 319 (320)
T cd04823 263 VPTFAYQVSGEY---AMLKAAAQNGWLDEDKVMLESLLAFKRAGADGILTYFAKEAAEWL 319 (320)
T ss_pred CCEEEEEccHHH---HHHHHHHHcCCCcHHHHHHHHHHHHHhcCCCEEeeccHHHHHHhh
Confidence 355444443331 223333344433333557999999999999999999999 77888
No 40
>PF14802 TMEM192: TMEM192 family
Probab=20.49 E-value=82 Score=26.69 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=39.3
Q ss_pred HHHHHhCCCCCcHHHHHHHhhC---------------CCCCChHHHHHHHHHHHHHHHHHHhhcCCc
Q psy16119 52 LNHMMQFGSSVPWNEALFTATG---------------ESRLDANALREYFRPLEDWLVAENLRTGEF 103 (151)
Q Consensus 52 L~~mm~lGsSkpW~eaL~~~TG---------------~~~msa~aLLeYF~PL~~WL~~eN~~~~~~ 103 (151)
+.++++--++++=|||++..-. .+..+.+.++|+=.=|+.||+++|.+.+..
T Consensus 165 iv~V~kFN~~~~~PDv~~~~~~~~~~~~~~~~~e~g~r~~~~~eellEkQadlI~yLk~hn~~L~~r 231 (236)
T PF14802_consen 165 IVKVRKFNKARPPPDVLREEYSRSYLYPSSSSSELGFRDGSSLEELLEKQADLIRYLKEHNARLSRR 231 (236)
T ss_pred HHHHHHHhccCCCCCCchhhhccccCCCCCCccccCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777788888776433 235688999999999999999999876543
No 41
>PF09079 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The C-terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity []. ; PDB: 2QBY_A 2V1U_A 1W5T_A 1W5S_B 1FNN_B.
Probab=20.39 E-value=1.8e+02 Score=19.72 Aligned_cols=14 Identities=29% Similarity=0.729 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHcCC
Q psy16119 13 QFQIHEALCKASGQ 26 (151)
Q Consensus 13 QFQf~eaLC~~ag~ 26 (151)
-|+.|+.+|+..|-
T Consensus 21 vy~~Y~~lc~~~~~ 34 (85)
T PF09079_consen 21 VYEVYEELCESLGV 34 (85)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCC
Confidence 48999999998774
No 42
>cd08768 Cdc6_C Winged-helix domain of essential DNA replication protein Cell division control protein (Cdc6), which mediates DNA binding. This model characterizes the winged-helix, C-terminal domain of the Cell division control protein (Cdc6_C). Cdc6 (also known as Cell division cycle 6 or Cdc18) functions as a regulator at the early stages of DNA replication, by helping to recruit and load the Minichromosome Maintenance Complex (MCM) onto DNA and may have additional roles in the control of mitotic entry. Precise duplication of chromosomal DNA is required for genomic stability during replication. Cdc6 has an essential role in DNA replication and irregular expression of Cdc6 may lead to genomic instability. Cdc6 over-expression is observed in many cancerous lesions. DNA replication begins when an origin recognition complex (ORC) binds to a replication origin site on the chromatin. Studies indicate that Cdc6 interacts with ORC through the Orc1 subunit, and that this association increases
Probab=20.21 E-value=2.1e+02 Score=19.07 Aligned_cols=13 Identities=31% Similarity=0.802 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHcC
Q psy16119 13 QFQIHEALCKASG 25 (151)
Q Consensus 13 QFQf~eaLC~~ag 25 (151)
-|+.|+.+|+..+
T Consensus 28 vy~~Y~~~c~~~~ 40 (87)
T cd08768 28 VYEVYEELCEEIG 40 (87)
T ss_pred HHHHHHHHHHHcC
Confidence 4788999998775
No 43
>PF03288 Pox_D5: Poxvirus D5 protein-like; InterPro: IPR004968 This domain is found at the C terminus of phage P4 alpha protein and related proteins. Phage P4 DNA replication depends on the product of the alpha gene, which has origin recognition ability, DNA helicase activity, and DNA primase activity. The structure of the protein can be summarised as follows: The N terminus provides the primase activity, the central region is the helicase/nucleoside triphosphatase domain and the ori DNA recognition resides in the C-terminal 1/3 of the protein []. The domain is also found at the C terminus of a number of proteins from orthopox viruses including vaccinia virus D5. D5 encodes a 90kDa protein that is transiently expressed at early times after infection. It has an nucleoside triphosphatase activity which is independent of common nucleic acid cofactors and it can hydrolyse all the common ribo- and deoxyribonucleoside triphosphates to diphosphates in the presence of a divalent cation [].; PDB: 1KA8_E.
Probab=20.15 E-value=1.4e+02 Score=20.12 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCCCHHHhHHHHHHHhCC
Q psy16119 10 NILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFG 59 (151)
Q Consensus 10 ~ILQFQf~eaLC~~ag~~~~~d~~~~pLh~CDiy~Sk~AG~~L~~mm~lG 59 (151)
.-..|+.|++-|+..|+ .| ..+++.-++.|++++..|
T Consensus 24 ~~~lY~~Y~~wc~~ng~--------~~-----~ls~~~F~~~L~~~~~~~ 60 (86)
T PF03288_consen 24 SKDLYDAYKEWCEENGY--------KP-----PLSKRKFGKELKQYFPEG 60 (86)
T ss_dssp TTBHHHHHHHHHHHTT---------S---------HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhCC--------Cc-----ccCHHHHHHHHHHHhhhh
Confidence 33468999999999997 33 236777788888877553
Done!