RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16119
(151 letters)
>gnl|CDD|188999 cd06461, M2_ACE, Peptidase family M2 Angiotensin converting enzyme
(ACE). Peptidase family M2 Angiotensin converting
enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc
dependent dipeptidase that catalyzes the conversion of
the decapeptide angiotensin I to the potent vasopressor
octapeptide angiotensin II, by removing two C-terminal
amino acids. There are two forms of the enzyme in
humans, the ubiquitous somatic ACE and the
sperm-specific germinal ACE, both encoded by the same
gene through transcription from alternative promoters.
Somatic ACE has two tandem active sites with distinct
catalytic properties, whereas germinal ACE, the function
of which is largely unknown, has just a single active
site. Recently, an ACE homolog, ACE2, has been
identified in humans that differs from ACE; it
preferentially removes carboxy-terminal hydrophobic or
basic amino acids and appears to be important in cardiac
function. ACE homologs (also known as members of the M2
gluzincin family) have been found in a wide variety of
species, including those that neither have a
cardiovascular system nor synthesize angiotensin. ACE is
well-known as a key part of the renin-angiotensin system
that regulates blood pressure and ACE inhibitors are
important for the treatment of hypertension.
Length = 562
Score = 153 bits (389), Expect = 9e-45
Identities = 56/96 (58%), Positives = 66/96 (68%), Gaps = 7/96 (7%)
Query: 2 EYIRYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSS 61
YIRY+VS ILQFQ H+ALCKA+G + PL KCDIY SKEAG L M++ GSS
Sbjct: 474 PYIRYFVSFILQFQFHKALCKAAGH-------TGPLHKCDIYGSKEAGKKLRAMLELGSS 526
Query: 62 VPWNEALFTATGESRLDANALREYFRPLEDWLVAEN 97
PW EAL TGE +DA+AL EYF PLE+WL +N
Sbjct: 527 KPWPEALEALTGEREMDASALLEYFEPLEEWLEEQN 562
>gnl|CDD|201774 pfam01401, Peptidase_M2, Angiotensin-converting enzyme. Members of
this family are dipeptidyl carboxydipeptidases (cleave
carboxyl dipeptides) and most notably convert
angiotensin I to angiotensin II. Many members of this
family contain a tandem duplication of the 600 amino
acid peptidase domain, both of these are catalytically
active. Most members are secreted membrane bound
ectoenzymes.
Length = 595
Score = 124 bits (313), Expect = 5e-34
Identities = 54/104 (51%), Positives = 68/104 (65%), Gaps = 7/104 (6%)
Query: 3 YIRYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSSV 62
YIRY+VS I+QFQ HEALCKA+G + PL +CDIY+SKEAG L M+ G S
Sbjct: 492 YIRYFVSFIIQFQFHEALCKAAGH-------TGPLHQCDIYQSKEAGAKLADAMKLGYSR 544
Query: 63 PWNEALFTATGESRLDANALREYFRPLEDWLVAENLRTGEFVGW 106
PW EA+ TG+ + A+A+ YF+PL WL EN R GE +GW
Sbjct: 545 PWPEAMKDITGQPNMSASAMLNYFKPLTQWLQTENQRHGEVLGW 588
>gnl|CDD|216510 pfam01450, IlvC, Acetohydroxy acid isomeroreductase, catalytic
domain. Acetohydroxy acid isomeroreductase catalyzes
the conversion of acetohydroxy acids into dihydroxy
valerates. This reaction is the second in the synthetic
pathway of the essential branched side chain amino acids
valine and isoleucine.
Length = 146
Score = 29.2 bits (66), Expect = 0.50
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 28/103 (27%)
Query: 1 MEYIRYYVSNILQFQIHEALCKASGQY----RADDPSSKPLFKCDIYRSKEAGVLLNHMM 56
+ +R +S ++ G Y R ++K L K +I + + G
Sbjct: 61 LSGMRDSISTTAEY----------GAYLWGPRIITEATKILMK-EILKDIQNGTFAK--- 106
Query: 57 QFGSSVPWNEALFTATGESRLDANALREYFRPLEDWLVAENLR 99
+ N A N R+ R V + LR
Sbjct: 107 ---EWLLENSA-------GNPRLNKERKEIREHPIEKVGKKLR 139
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 29.9 bits (67), Expect = 0.60
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 26 QYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSSVPWNEALFTATGESRLDANALREY 85
+Y D+ S + L + R + N++ QF S ALF GES A A +
Sbjct: 3962 RYLGDEESRRTLAGLPVPR-----ITFNYLGQFDGSFDEEMALFVPAGES---AGAEQSP 4013
Query: 86 FRPLEDWLVAENLRT--GEF-VGWTYDGD 111
PL++WL + N R GE + WT+ +
Sbjct: 4014 DAPLDNWL-SLNGRVYGGELSLDWTFSRE 4041
>gnl|CDD|129430 TIGR00330, glpX, fructose-1,6-bisphosphatase, class II. This model
represents GlpX, one of three classes of bacterial
fructose-1,6-bisphosphatases. This form is homodimeric
and Mn2+-dependent, and only very distantly related to
the class I fructose-1,6-bisphosphatase, the product of
the fbp gene, which is homotetrameric and
Mg2+-dependent. A third class is found as one of two
types in Bacillus subtilis. In E. coli, GlpX is found in
the glpFKX operon together with a glycerol update
protein and glycerol kinase [Energy metabolism, Pentose
phosphate pathway].
Length = 321
Score = 29.0 bits (65), Expect = 0.96
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 26 QYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSSVPWNEALFTATG 73
+ D+ ++ + + +I R K GV +N +++ V + +F+ATG
Sbjct: 236 DVKGDNEENRRIAEQEIARCKAMGVDVNKVLRLEDLVRGDNVIFSATG 283
>gnl|CDD|188993 cd06258, M3_like, Peptidase M3-like family, a zincin
metallopeptidase, includes M3 and M32 families. The
peptidase M3-like family, also called neurolysin-like
family, is part of the "zincins" metallopeptidases, and
includes M3 and M32 families of metallopeptidases. The
M3 family is subdivided into two subfamilies: the
widespread M3A, which comprises a number of
high-molecular mass endo- and exopeptidases from
bacteria, archaea, protozoa, fungi, plants and animals,
and the small M3B, whose members are enzymes primarily
from bacteria. Well-known mammalian/eukaryotic M3A
endopeptidases are the thimet oligopeptidase (TOP;
endopeptidase 3.4.24.15), neurolysin (alias
endopeptidase 3.4.24.16), and the mitochondrial
intermediate peptidase. The first two are intracellular
oligopeptidases, which act only on relatively short
substrates of less than 20 amino acid residues, while
the latter cleaves N-terminal octapeptides from proteins
during their import into the mitochondria. The M3A
subfamily also contains several bacterial
endopeptidases, collectively called oligopeptidases A,
as well as a large number of bacterial
carboxypeptidases, called dipeptidyl peptidases (Dcp;
Dcp II; peptidyl dipeptidase; EC 3.4.15.5). The
peptidases in the M3 family contain the HEXXH motif that
forms the active site in conjunction with a
C-terminally-located Glutamic acid (Glu) residue. A
single zinc ion is ligated by the side-chains of the two
Histidine (His) residues, and the more C-terminal Glu.
Most of the peptidases are synthesized without signal
peptides or propeptides, and function intracellularly.
There are similarities to the thermostable
carboxypeptidases from Pyrococcus furiosus
carboxypeptidase (PfuCP), and Thermus aquaticus (TaqCP),
belonging to peptidase family M32. Little is known about
function of this family, including carboxypeptidases Taq
and Pfu.
Length = 400
Score = 28.9 bits (65), Expect = 0.99
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 17/81 (20%)
Query: 3 YIRYYVSNILQFQIHEALCKASGQYRADDPSSKPLFKCDIYRSKEAG-VLLNHMMQFGSS 61
Y Y ++ +L Q+ L + G D+ + EAG L + + G+S
Sbjct: 332 YHGYLLAEMLAAQLRAHLKEKFG---------------DLVDNPEAGAWLKEKLWRPGNS 376
Query: 62 VPWNEALFTATGESRLDANAL 82
+ W E L +ATGE L+A
Sbjct: 377 LDWEELLKSATGE-PLNAEYF 396
>gnl|CDD|226977 COG4630, XdhA, Xanthine dehydrogenase, iron-sulfur cluster and
FAD-binding subunit A [Nucleotide transport and
metabolism].
Length = 493
Score = 27.8 bits (62), Expect = 2.5
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 14/44 (31%)
Query: 63 PWNEALFTATGESRLDANALREYFRPLEDW--------LVAENL 98
PW EA A A AL F PL D L A+NL
Sbjct: 433 PWTEATVEAA------AAALAGDFTPLTDMRASAEYRALTAKNL 470
>gnl|CDD|215557 PLN03069, PLN03069, magnesiumprotoporphyrin-IX chelatase subunit H;
Provisional.
Length = 1220
Score = 27.8 bits (62), Expect = 3.0
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 52 LNHMMQFGSSVPWNEALFTATGESRLDANALREYFRPLEDWL---VAEN 97
L ++ FG PW EAL T D LR F L L VA+N
Sbjct: 851 LTSLLGFGVKEPWVEALSN-TKFYDADREKLRTLFDFLGFCLKQVVADN 898
>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional.
Length = 334
Score = 27.1 bits (60), Expect = 3.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 61 SVPWNEALFTATGESRLDANALREYFRPL 89
S P N L A E+R D AL ++FR L
Sbjct: 201 SFPGNGGLIAAAKEARYDKEALIKFFRML 229
>gnl|CDD|215547 PLN03037, PLN03037, lipase class 3 family protein; Provisional.
Length = 525
Score = 27.2 bits (60), Expect = 3.5
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 16/60 (26%)
Query: 61 SVPWNEALFTATGESRLDANALREYFRPLEDWLVAENLRTGEFVGWTYDG-------DYC 113
S W E + E+ LD PL WL E ++ GEFV TYD ++C
Sbjct: 113 SKMWREIHGSNNWENLLD---------PLHPWLRREVVKYGEFVEATYDAFDFDPLSEFC 163
>gnl|CDD|171459 PRK12388, PRK12388, fructose-1,6-bisphosphatase II-like protein;
Reviewed.
Length = 321
Score = 27.3 bits (60), Expect = 3.9
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 20 LCKASGQYRADDPSSKPLFKCDIYRSKEAGVLLNHMMQFGSSVPWNEALFTATG 73
C+A G D ++ + + + R K GV +N + V N+ LF+ATG
Sbjct: 234 FCQAKG----DYTENRQIAEQERKRCKAMGVDVNRVYSLDELVRGNDILFSATG 283
>gnl|CDD|234289 TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype
II/NMENI. The CRISPR-associated protein Cas1 is
virtually universal to CRISPR systems. CRISPR, an
acronym for Clustered Regularly Interspaced Short
Palindromic Repeats, is a prokaryotic immunity system
for foreign DNA, mostly from phage. CRISPR systems
belong to different subtypes, distinguished by both
nature of the repeats, the makeup of the cohort of
associated Cas proteins, and by molecular phylogeny
within the more universal Cas proteins such as this one.
This model is of type EXCEPTION and provides more
specific information than the EQUIVALOG model TIGR00287.
It describes the Cas1 variant of the NMENI subtype of
CRISPR/Cas system.
Length = 278
Score = 26.4 bits (59), Expect = 5.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 82 LREYFRPLEDWLVAENLRTGEFVGWTYD 109
L E FRPL D+LV E L T +
Sbjct: 217 LMEPFRPLVDYLVYELLIEEFNDDLTKE 244
>gnl|CDD|215176 PLN02310, PLN02310, triacylglycerol lipase.
Length = 405
Score = 26.5 bits (58), Expect = 6.8
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 64 WNEALFTATGESRLDANALREYFRPLEDWLVAENLRTGEFVGWTYD 109
W+E ++ E LD PL WL E L+ GEF TYD
Sbjct: 15 WHEIHGSSNWEHLLD---------PLHPWLRREILKYGEFAQATYD 51
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.413
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,676,805
Number of extensions: 659936
Number of successful extensions: 587
Number of sequences better than 10.0: 1
Number of HSP's gapped: 585
Number of HSP's successfully gapped: 18
Length of query: 151
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 63
Effective length of database: 7,034,450
Effective search space: 443170350
Effective search space used: 443170350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)