BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16124
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 114/265 (43%), Gaps = 27/265 (10%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105
NY+I SLA ADL+ GL VVP L + W +GN C I+V T ++
Sbjct: 41 NYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIA 100
Query: 106 VDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICML-- 163
VDRY A+ P +Y+++ TK + + + WI S + P+ ++ C
Sbjct: 101 VDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEE 160
Query: 164 ---DWGGMAAYTITLGCLVLGPSLITIVYTYSYIF-SMMRKLKSGPPIHDKEYATALAEN 219
D+ AY I + L+ +V+ YS +F R+L+ KE+
Sbjct: 161 TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKFCLKEHKAL---- 216
Query: 220 LSNPSHNMSFSLIM-TFWLSWLPYIVVKLYEYLSGHIISFIPQXXXXXXXXXXXWLGILN 278
+ +IM TF L WLP+ +V + + ++I W+G +N
Sbjct: 217 -------KTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIR-------KEVYILLNWIGYVN 262
Query: 279 SVWKGIVLILMSPQFRIMLR-LLCI 302
S + ++ SP FRI + LLC+
Sbjct: 263 SGFNPLIY-CRSPDFRIAFQELLCL 286
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 117/282 (41%), Gaps = 33/282 (11%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105
NY+I SLA ADL+ GL VVP L + W +GN C I+V T ++
Sbjct: 218 NYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIA 277
Query: 106 VDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICML-- 163
VDRY A+ P +Y+++ TK + + + WI S + P+ ++ C
Sbjct: 278 VDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEE 337
Query: 164 ---DWGGMAAYTITLGCLVLGPSLITIVYTYSYIF-SMMRKLKSGPPIHDKEYATALA-- 217
D+ AY I + L+ +V+ YS +F R+L+ + + L+
Sbjct: 338 TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQV 397
Query: 218 ENLSNPSHNMSFS----------------LIMTFWLSWLPYIVVKLYEYLSGHIISFIPQ 261
E H + S ++ TF L WLP+ +V + + ++I
Sbjct: 398 EQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIR---- 453
Query: 262 XXXXXXXXXXXWLGILNSVWKGIVLILMSPQFRIMLR-LLCI 302
W+G +NS + ++ SP FRI + LLC+
Sbjct: 454 ---KEVYILLNWIGYVNSGFNPLIY-CRSPDFRIAFQELLCL 491
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 118/282 (41%), Gaps = 33/282 (11%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105
NY+I SLA ADL+ GL VVP L + W +GN C I+V T ++
Sbjct: 69 NYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIA 128
Query: 106 VDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICML-- 163
VDRY A+ P +Y+++ TK + + + WI S + P+ ++ C
Sbjct: 129 VDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANE 188
Query: 164 ---DWGGMAAYTITLGCLVLGPSLITIVYTYSYIF-SMMRKLKSGPPIHDKEYATALA-- 217
D+ AY I + L+ +V+ YS +F R+L+ + + L+
Sbjct: 189 TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQV 248
Query: 218 ENLSNPSHNM---------------SFSLIM-TFWLSWLPYIVVKLYEYLSGHIISFIPQ 261
E H + + +IM TF L WLP+ +V + + ++I
Sbjct: 249 EQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIR---- 304
Query: 262 XXXXXXXXXXXWLGILNSVWKGIVLILMSPQFRIMLR-LLCI 302
W+G +NS + ++ SP FRI + LLC+
Sbjct: 305 ---KEVYILLNWIGYVNSGFNPLIY-CRSPDFRIAFQELLCL 342
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 117/285 (41%), Gaps = 39/285 (13%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105
NY+I SLA ADL+ GL VVP L + W +GN C I+V T ++
Sbjct: 46 NYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIA 105
Query: 106 VDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICML-- 163
VDRY A+ P +Y+++ TK + + + WI S + P+ ++ C
Sbjct: 106 VDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANE 165
Query: 164 ---DWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENL 220
D+ AY I + L+ +V+ YS +F ++ K DK +NL
Sbjct: 166 TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVF---QEAKRQLQKIDKSEGRFHVQNL 222
Query: 221 SNPSHN---------------------MSFSLIM-TFWLSWLPYIVVKLYEYLSGHIISF 258
S + + +IM TF L WLP+ +V + + ++I
Sbjct: 223 SQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIR- 281
Query: 259 IPQXXXXXXXXXXXWLGILNSVWKGIVLILMSPQFRIMLR-LLCI 302
W+G +NS + ++ SP FRI + LLC+
Sbjct: 282 ------KEVYILLNWIGYVNSGFNPLIY-CRSPDFRIAFQELLCL 319
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 118/282 (41%), Gaps = 33/282 (11%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105
NY+I SLA ADL+ GL VVP L + W +GN C I+V T ++
Sbjct: 70 NYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIA 129
Query: 106 VDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICML-- 163
VDRY A+ P +Y+++ TK + + + WI S + P+ ++ C
Sbjct: 130 VDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEE 189
Query: 164 ---DWGGMAAYTITLGCLVLGPSLITIVYTYSYIF-SMMRKLKSGPPIHDKEYATALA-- 217
D+ AY I + L+ +V+ YS +F R+L+ + + L+
Sbjct: 190 TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQV 249
Query: 218 ENLSNPSHNM---------------SFSLIM-TFWLSWLPYIVVKLYEYLSGHIISFIPQ 261
E H + + +IM TF L WLP+ +V + + ++I
Sbjct: 250 EQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIR---- 305
Query: 262 XXXXXXXXXXXWLGILNSVWKGIVLILMSPQFRIMLR-LLCI 302
W+G +NS + ++ SP FRI + LLC+
Sbjct: 306 ---KEVYILLNWIGYVNSGFNPLIY-CRSPDFRIAFQELLCL 343
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 116/274 (42%), Gaps = 23/274 (8%)
Query: 37 SAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVI 96
S Q + N +I SLA ADL+ GLLVVP + W++G+ +C + ++V
Sbjct: 38 STQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTA 97
Query: 97 CNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDF----SDP 152
T +++DRYLA+ P RY+++ T+ R + + W SA+V P++ DP
Sbjct: 98 SIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDP 157
Query: 153 ---KYDEDGYICMLDWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHD 209
K +D C D+ AY I + L+ +++ ++ R+ K D
Sbjct: 158 QALKCYQDPGCC--DFVTNRAYAIASSIISFYIPLLIMIFVALRVY---REAKEQIRKID 212
Query: 210 KEYATALAENLSNPSHNM--SFSLIM-TFWLSWLPYIVVKLYEYLSGHIISFIPQXXXXX 266
+ + + H + +IM F L WLP+ +V + + ++
Sbjct: 213 RASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVP-------DW 265
Query: 267 XXXXXXWLGILNSVWKGIVLILMSPQFRIMLRLL 300
WLG NS I+ SP FR + L
Sbjct: 266 LFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRL 298
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 114/272 (41%), Gaps = 21/272 (7%)
Query: 37 SAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVI 96
S Q + N +I SLA ADL+ GLLVVP + W++G+ +C + ++V
Sbjct: 38 STQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTA 97
Query: 97 CNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDF----SDP 152
T +++DRYLA+ P RY+++ T+ R + + W SA+V P++ DP
Sbjct: 98 SIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDP 157
Query: 153 ---KYDEDGYICMLDWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHD 209
K +D C D+ AY I + L+ +++ ++ R+ K D
Sbjct: 158 QALKCYQDPGCC--DFVTNRAYAIASSIISFYIPLLIMIFVALRVY---REAKEQIRKID 212
Query: 210 KEYATALAENLSNPSHNMSFSLIM-TFWLSWLPYIVVKLYEYLSGHIISFIPQXXXXXXX 268
+ + + +IM F L WLP+ +V + + ++
Sbjct: 213 RASKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVP-------DWLF 265
Query: 269 XXXXWLGILNSVWKGIVLILMSPQFRIMLRLL 300
WLG NS I+ SP FR + L
Sbjct: 266 VAFNWLGYANSAMNPIIYC-RSPDFRKAFKRL 296
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 5/160 (3%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105
NY+I SLA ADL+ GL VVP L + W +GN C I+V +T ++
Sbjct: 77 NYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWTLCVIA 136
Query: 106 VDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICML-- 163
VDRY A+ P +Y+++ TK + + + WI S + P+ ++ C
Sbjct: 137 VDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEE 196
Query: 164 ---DWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRK 200
D+ AY I + L+ +V+ YS +F ++
Sbjct: 197 TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 236
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 228 SFSLIM-TFWLSWLPYIVVKLYEYLSGHIISFIPQXXXXXXXXXXXWLGILNSVWKGIVL 286
+ +IM TF L WLP+ +V + + ++I W+G +NS + ++
Sbjct: 410 TLGIIMGTFTLCWLPFFIVNIVHVIQDNLIR-------KEVYILLNWIGYVNSGFNPLIY 462
Query: 287 ILMSPQFRIMLR-LLCI 302
SP FRI + LLC+
Sbjct: 463 -CRSPDFRIAFQELLCL 478
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 5/160 (3%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105
NY+I SLA ADL+ GL VVP L + W +GN C I+V T ++
Sbjct: 76 NYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIA 135
Query: 106 VDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICML-- 163
VDRY A+ P +Y+++ TK + + + WI S + P+ ++ C
Sbjct: 136 VDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEE 195
Query: 164 ---DWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRK 200
D+ AY I + L+ +V+ YS +F ++
Sbjct: 196 TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 235
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 228 SFSLIM-TFWLSWLPYIVVKLYEYLSGHIISFIPQXXXXXXXXXXXWLGILNSVWKGIVL 286
+ +IM TF L WLP+ +V + + ++I W+G +NS + ++
Sbjct: 409 TLGIIMGTFTLCWLPFFIVNIVHVIQDNLIR-------KEVYILLNWIGYVNSGFNPLIY 461
Query: 287 ILMSPQFRIMLR-LLCI 302
SP FRI + LLC+
Sbjct: 462 -CRSPDFRIAFQELLCL 477
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 5/160 (3%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105
NY+I SLA ADL+ GL VVP L + W +GN C I+V T ++
Sbjct: 77 NYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIA 136
Query: 106 VDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICML-- 163
VDRY A+ P +Y+++ TK + + + WI S + P+ ++ C
Sbjct: 137 VDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEE 196
Query: 164 ---DWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRK 200
D+ AY I + L+ +V+ YS +F ++
Sbjct: 197 TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 236
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 228 SFSLIM-TFWLSWLPYIVVKLYEYLSGHIISFIPQXXXXXXXXXXXWLGILNSVWKGIVL 286
+ +IM TF L WLP+ +V + + ++I W+G +NS + ++
Sbjct: 410 TLGIIMGTFTLCWLPFFIVNIVHVIQDNLIR-------KEVYILLNWIGYVNSGFNPLIY 462
Query: 287 ILMSPQFRIMLR-LLCI 302
SP FRI + LLC+
Sbjct: 463 -CRSPDFRIAFQELLCL 478
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 5/160 (3%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105
NY+I SLA ADL+ GL VVP L + W +GN C I+V T ++
Sbjct: 45 NYFITSLACADLVMGLAVVPFGAACILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIA 104
Query: 106 VDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICML-- 163
VDRY A+ P +Y+++ TK + + + WI S + P+ ++ C
Sbjct: 105 VDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEE 164
Query: 164 ---DWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRK 200
D+ AY I + L+ +V+ YS +F ++
Sbjct: 165 TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 204
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 234 TFWLSWLPYIVVKLYEYLSGHIISFIPQXXXXXXXXXXXWLGILNSVWKGIVLILMSPQF 293
TF L WLP+ +V + + ++I W+G +NS + ++ SP F
Sbjct: 385 TFTLCWLPFFIVNIVHVIQDNLIR-------KEVYILLNWIGYVNSGFNPLIY-CRSPDF 436
Query: 294 RIMLR-LLCI 302
RI + LLC+
Sbjct: 437 RIAFQELLCL 446
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105
NY+++S A AD+L G+L +P ++ A++ + C + + L ++ + ++
Sbjct: 42 NYFVVSAAAADILVGVLAIPFAI--AISTGFCAACHGCLFIACFVLVLTASSIFSLLAIA 99
Query: 106 VDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDG 158
+DRY+A+R PLRY + T TR + +A W+ S + P+L +++ ++G
Sbjct: 100 IDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEG 152
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 14/165 (8%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105
N YI +LA+AD L LL +P L W +GN +C+ V I+ +T MS
Sbjct: 161 NIYIFNLALADTLV-LLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMS 219
Query: 106 VDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLD- 164
VDRY+A+ P+R V+T ++ Q W +++V P + S DE+ C+++
Sbjct: 220 VDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEE-IECLVEI 278
Query: 165 ------WGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKS 203
WG + A I L ++ +I++ Y+ M+R+L+
Sbjct: 279 PTPQDYWGPVFAICIFLFSFIVPVLVISVCYSL-----MIRRLRG 318
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 18/224 (8%)
Query: 37 SAQCPGEMINYYILSLAMADLLFGLLV-VPLSVYPALAQDWVYGNVICRIVGYIEVTLWV 95
S Q P M +I++LA +D F L+ PL + W++G C++ G+I
Sbjct: 64 SLQTPANM---FIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGF 120
Query: 96 ICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYD 155
+ T +S+DRY + +P+ + R + F W+ S + P+ + Y
Sbjct: 121 MSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWG--AYT 178
Query: 156 EDGYICMLDWGGMAAYTITLGCLV-------LGPSLITIVYTYSYIFSMMRKLKSGPPIH 208
+G +C + ++ + T ++ GP LI ++ + S+ K +
Sbjct: 179 LEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMA 238
Query: 209 DKEYATALAENLSNPSHNM-----SFSLIMTFWLSWLPYIVVKL 247
+ A L + + + M S ++ F LSW PY VV L
Sbjct: 239 KRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVAL 282
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 18/224 (8%)
Query: 37 SAQCPGEMINYYILSLAMADLLFGLLV-VPLSVYPALAQDWVYGNVICRIVGYIEVTLWV 95
S Q P M +I++LA +D F L+ PL + W++G C++ G+I
Sbjct: 63 SLQTPANM---FIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGF 119
Query: 96 ICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYD 155
+ T +S+DRY + +P+ + R + F W+ S + P+ + Y
Sbjct: 120 MSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWG--AYT 177
Query: 156 EDGYICMLDWGGMAAYTITLGCLV-------LGPSLITIVYTYSYIFSMMRKLKSGPPIH 208
+G +C + ++ + T ++ GP LI ++ + S+ K +
Sbjct: 178 LEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMA 237
Query: 209 DKEYATALAENLSNPSHNM-----SFSLIMTFWLSWLPYIVVKL 247
+ A L + + + M S ++ F LSW PY VV L
Sbjct: 238 KRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVAL 281
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 121/284 (42%), Gaps = 36/284 (12%)
Query: 45 INYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWM 104
+NY +L+LA+ADL ++Y +L +V+G C + G+ I ++ + +
Sbjct: 73 LNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVL 132
Query: 105 SVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICM-- 162
+++RY+ V KP+ + +AFTW+ + PPL+ +S +Y +G C
Sbjct: 133 AIERYVVVCKPMSNFRFG-ENHAIMGVAFTWVMALACAAPPLVGWS--RYIPEGMQCSCG 189
Query: 163 LDW------GGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATAL 216
+D+ ++ I + + LI I + Y + +++ + ++ +A
Sbjct: 190 IDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA------QQQESAT 243
Query: 217 AENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLS-----GHIISFIPQXXXXXXXXXX 271
+ M +++ F + WLPY V Y + G I IP
Sbjct: 244 TQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIP----------- 292
Query: 272 XWLGILNSVWKGIVLILMSPQFRIMLRLLCISVCCKQKSNWDVE 315
+ ++V+ ++ I+M+ QFR + ++CC + D E
Sbjct: 293 AFFAKTSAVYNPVIYIMMNKQFR---NCMVTTLCCGKNPLGDDE 333
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 121/284 (42%), Gaps = 36/284 (12%)
Query: 45 INYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWM 104
+NY +L+LA+ADL ++Y +L +V+G C + G+ I ++ + +
Sbjct: 72 LNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVL 131
Query: 105 SVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICM-- 162
+++RY+ V KP+ + +AFTW+ + PPL+ +S +Y +G C
Sbjct: 132 AIERYVVVCKPMSNFRFG-ENHAIMGVAFTWVMALACAAPPLVGWS--RYIPEGMQCSCG 188
Query: 163 LDW------GGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATAL 216
+D+ ++ I + + LI I + Y + +++ + ++ +A
Sbjct: 189 IDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA------QQQESAT 242
Query: 217 AENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLS-----GHIISFIPQXXXXXXXXXX 271
+ M +++ F + WLPY V Y + G I IP
Sbjct: 243 TQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIP----------- 291
Query: 272 XWLGILNSVWKGIVLILMSPQFRIMLRLLCISVCCKQKSNWDVE 315
+ ++V+ ++ I+M+ QFR + ++CC + D E
Sbjct: 292 AFFAKTSAVYNPVIYIMMNKQFR---NCMVTTLCCGKNPLGDDE 332
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 121/284 (42%), Gaps = 36/284 (12%)
Query: 45 INYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWM 104
+NY +L+LA+ADL ++Y +L +V+G C + G+ I ++ + +
Sbjct: 73 LNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLQGFFATLGGEIALWSLVVL 132
Query: 105 SVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICM-- 162
+++RY+ V KP+ + +AFTW+ + PPL+ +S +Y +G C
Sbjct: 133 AIERYVVVCKPMSNFRFG-ENHAIMGVAFTWVMALACAAPPLVGWS--RYIPEGMQCSCG 189
Query: 163 LDW------GGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATAL 216
+D+ ++ I + + LI I + Y + +++ + ++ +A
Sbjct: 190 IDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA------QQQESAT 243
Query: 217 AENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLS-----GHIISFIPQXXXXXXXXXX 271
+ M +++ F + WLPY V Y + G I IP
Sbjct: 244 TQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIP----------- 292
Query: 272 XWLGILNSVWKGIVLILMSPQFRIMLRLLCISVCCKQKSNWDVE 315
+ ++V+ ++ I+M+ QFR + ++CC + D E
Sbjct: 293 AFFAKTSAVYNPVIYIMMNKQFR---NCMVTTLCCGKNPLGDDE 333
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 121/284 (42%), Gaps = 36/284 (12%)
Query: 45 INYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWM 104
+NY +L+LA+ADL ++Y +L +V+G C + G+ I ++ + +
Sbjct: 73 LNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVL 132
Query: 105 SVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICM-- 162
+++RY+ V KP+ + +AFTW+ + PPL+ +S +Y +G C
Sbjct: 133 AIERYVVVCKPMSNFRFG-ENHAIMGVAFTWVMALACAAPPLVGWS--RYIPEGMQCSCG 189
Query: 163 LDW------GGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATAL 216
+D+ ++ I + + LI I + Y + +++ + ++ +A
Sbjct: 190 IDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA------QQQESAT 243
Query: 217 AENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLS-----GHIISFIPQXXXXXXXXXX 271
+ M +++ F + WLPY V Y + G I IP
Sbjct: 244 TQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIP----------- 292
Query: 272 XWLGILNSVWKGIVLILMSPQFRIMLRLLCISVCCKQKSNWDVE 315
+ ++V+ ++ I+M+ QFR + ++CC + D E
Sbjct: 293 AFFAKTSAVYNPVIYIMMNKQFR---NCMVTTLCCGKNPLGDDE 333
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 121/284 (42%), Gaps = 36/284 (12%)
Query: 45 INYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWM 104
+NY +L+LA+ADL ++Y +L +V+G C + G+ I ++ + +
Sbjct: 72 LNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVL 131
Query: 105 SVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICM-- 162
+++RY+ V KP+ + +AFTW+ + PPL+ +S +Y +G C
Sbjct: 132 AIERYVVVCKPMSNFRFG-ENHAIMGVAFTWVMALACAAPPLVGWS--RYIPEGMQCSCG 188
Query: 163 LDW------GGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATAL 216
+D+ ++ I + + LI I + Y + +++ + ++ +A
Sbjct: 189 IDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA------QQQESAT 242
Query: 217 AENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLS-----GHIISFIPQXXXXXXXXXX 271
+ M +++ F + WLPY V Y + G I IP
Sbjct: 243 TQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIP----------- 291
Query: 272 XWLGILNSVWKGIVLILMSPQFRIMLRLLCISVCCKQKSNWDVE 315
+ ++V+ ++ I+M+ QFR + ++CC + D E
Sbjct: 292 AFFAKTSAVYNPVIYIMMNKQFR---NCMVTTLCCGKNPLGDDE 332
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105
NY+++SLA AD+ G+L +P ++ ++ + C + + L ++ + ++
Sbjct: 42 NYFVVSLAAADIAVGVLAIPFAI--TISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIA 99
Query: 106 VDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDG 158
+DRY+A+R PLRY + T TR + +A W+ S + P+L +++ ++G
Sbjct: 100 IDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEG 152
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 120/284 (42%), Gaps = 36/284 (12%)
Query: 45 INYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWM 104
+NY +L+LA+ADL ++Y +L +V+G C + G+ I ++ + +
Sbjct: 73 LNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVL 132
Query: 105 SVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICM-- 162
+++RY+ V KP+ + +AFTW+ + PPL+ +S +Y +G C
Sbjct: 133 AIERYVVVCKPMSNFRFG-ENHAIMGVAFTWVMALACAAPPLVGWS--RYIPEGMQCSCG 189
Query: 163 LDW------GGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATAL 216
+D+ ++ I + + LI I + Y + +++ + ++ +A
Sbjct: 190 IDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA------QQQESAT 243
Query: 217 AENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLS-----GHIISFIPQXXXXXXXXXX 271
+ M ++ F + WLPY V Y + G I IP
Sbjct: 244 TQKAEKEVTRMVIIYVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIP----------- 292
Query: 272 XWLGILNSVWKGIVLILMSPQFRIMLRLLCISVCCKQKSNWDVE 315
+ ++V+ ++ I+M+ QFR + ++CC + D E
Sbjct: 293 AFFAKTSAVYNPVIYIMMNKQFR---NCMVTTLCCGKNPLGDDE 333
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 43 EMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFM 102
+ NY+++SLA AD+ G+L +P ++ ++ + C + + L ++ +
Sbjct: 54 NVTNYFVVSLAAADIAVGVLAIPFAI--TISTGFCAACHGCLFIACFVLVLTQSSIFSLL 111
Query: 103 WMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDG 158
+++DRY+A+R PLRY + T TR + +A W+ S + P+L +++ ++G
Sbjct: 112 AIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEG 167
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 43 EMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFM 102
+ NY+++SLA AD+ G+L +P ++ ++ + C + + L ++ +
Sbjct: 64 NVTNYFVVSLAAADIAVGVLAIPFAI--TISTGFCAACHGCLFIACFVLVLTQSSIFSLL 121
Query: 103 WMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDG 158
+++DRY+A+R PLRY + T TR + +A W+ S + P+L +++ ++G
Sbjct: 122 AIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEG 177
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 102/227 (44%), Gaps = 25/227 (11%)
Query: 43 EMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFM 102
+ NY+++SLA AD+L G+L +P ++ ++ + C + + L ++ +
Sbjct: 39 NVTNYFVVSLAAADILVGVLAIPFAI--TISTGFCAACHGCLFIACFVLVLAQSSIFSLL 96
Query: 103 WMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICM 162
+++DRY+A+ PLRY + T TR +A W+ S + P+L +++ ++G
Sbjct: 97 AIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHS 156
Query: 163 LDWG-GMAA-------------YTITLGCLVLGPSLITIVYTYSYIFSMMRK----LKSG 204
G G A Y C VL P L+ ++ Y IF+ R+ ++S
Sbjct: 157 QGCGEGQVACLFEDVVPMNYMVYFNFFAC-VLVP-LLLMLGVYLRIFAAARRQLKQMESQ 214
Query: 205 PPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYL 251
P ++ +T E + S + L F L WLP ++ + +
Sbjct: 215 PLPGERARSTLQKEVHAAKSAAIIAGL---FALCWLPLHIINCFTFF 258
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRI---VGYIEVTLWVICNYTFM 102
N YI+SL++ADL+ G +V+P+++ L W G +C + Y+ T + ++
Sbjct: 44 NLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASI---FSVF 100
Query: 103 WMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPL 146
+ +DRY +V++PLRY +TKTR + W S + P L
Sbjct: 101 ILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIPIL 144
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 26/206 (12%)
Query: 17 SMGRRQCVDIALDAQITPWYSAQCPGEMI-------------------NYYILSLAMADL 57
S G R +AL IT YSA C ++ N YI +LA+AD
Sbjct: 2 SPGARSASSLALAIAITALYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADA 61
Query: 58 LFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPLR 117
L +P L + W +G ++C+ V I+ +T MSVDRY+AV P++
Sbjct: 62 L-ATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVK 120
Query: 118 YETVQTKTRCQCWMAFTWISSAMVCCPPL-LDFSDPKYDEDGYICMLDWGGMAAY--TIT 174
+T + + W+ ++ V P + + + P+ + +CML + + Y T+T
Sbjct: 121 ALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTQPR--DGAVVCMLQFPSPSWYWDTVT 178
Query: 175 LGCLVLGPSLITI-VYTYSYIFSMMR 199
C+ L ++ I + T Y ++R
Sbjct: 179 KICVFLFAFVVPILIITVCYGLMLLR 204
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRI---VGYIEVTLWVICNYTFM 102
NY++LSLA ADL+ G++ + L + W GN+ C + + Y+ V+ +
Sbjct: 48 NYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYVASNASVM---NLL 104
Query: 103 WMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLL 147
+S DRY ++ +PL Y +T R + W+ S ++ P +L
Sbjct: 105 VISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWAPAIL 149
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105
N YI +LA+AD L +P L W +GN++C+IV I+ +T MS
Sbjct: 53 NIYIFNLALADAL-ATSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMS 111
Query: 106 VDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDW 165
VDRY+AV P++ +T + WI S+ + P + + KY + C L +
Sbjct: 112 VDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMF-MATTKYRQGSIDCTLTF 170
Query: 166 G 166
Sbjct: 171 S 171
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 8/162 (4%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQD-WVYGNVICRIVGYIEVTLWVICNYTFMWM 104
NY ++SLA+ADLL LV+P VY + W + + C + ++V + + +
Sbjct: 74 NYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAI 133
Query: 105 SVDRYLAVRKPLRYETVQTKTRCQ---CWMAFTWISSAMVCCPPLLDFSDPKYDEDGYIC 161
S+DRY AV P+ Y+ ++ C+ + W+ + V CP L F+ D +C
Sbjct: 134 SIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTTG---DPTVC 190
Query: 162 MLDWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKS 203
+ Y+ ++ L + +VY Y+ R+ K+
Sbjct: 191 SISNPDFVIYS-SVVSFYLPFGVTVLVYARIYVVLKQRRRKN 231
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/287 (20%), Positives = 117/287 (40%), Gaps = 27/287 (9%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105
NY++++LA A+ ++ A+ +W YG C+ + + Y+ ++
Sbjct: 68 NYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVA 127
Query: 106 VDRYLAVRKPLRYETVQTKTR---CQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICM 162
DRY+A+ PL+ T T+ C W+ A++ P +S + +CM
Sbjct: 128 FDRYMAIIHPLQPRLSATATKVVICVIWVL------ALLLAFPQGYYSTTETMPSRVVCM 181
Query: 163 LDWGGM------AAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATAL 216
++W Y I + L+ L+ I Y Y+ + + + D+ +
Sbjct: 182 IEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVS 241
Query: 217 AENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSG--HIISFIPQXXXXXXXXXXXWL 274
A+ M ++ TF + WLP+ + L Y++ ++ FI Q WL
Sbjct: 242 AKRKVV---KMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQ-----VYLAIMWL 293
Query: 275 GILNSVWKGIVLILMSPQFRIMLRLLCISVCCKQKSNWDVELIGMDS 321
+ ++++ I+ ++ +FR+ + CC S D E + M S
Sbjct: 294 AMSSTMYNPIIYCCLNDRFRLGFKHAF--RCCPFISAGDYEGLEMKS 338
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105
N YI +LA+AD L +P L W +G+V+C+IV I+ +T MS
Sbjct: 58 NIYIFNLALADALV-TTTMPFQSTVYLMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMS 116
Query: 106 VDRYLAVRKPLRYETVQTKTRCQCWMAFTW-ISSAMVCCPPLLDFSDPKYDEDGYICMLD 164
VDRY+AV P++ +T + + W +SS++ +L + + D D C L
Sbjct: 117 VDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVREDVDVIECSLQ 176
Query: 165 W 165
+
Sbjct: 177 F 177
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWM- 104
NY++ SLA ADL+ G+ + L + W G V+C + ++ +V+ N + M +
Sbjct: 59 NYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALD---YVVSNASVMNLL 115
Query: 105 --SVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFS---DPKYDEDGY 159
S DRY V KPL Y +T +A W+ S ++ P +L + + EDG
Sbjct: 116 IISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGE 175
Query: 160 ICMLDWGGMAAYTITLGCLVLGPSLITIVYTYSY------------IFSMMR 199
C + + AA +T G + L I+ T Y IF M+R
Sbjct: 176 -CYIQFFSNAA--VTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEMLR 224
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 44 MINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMW 103
M + Y L L++ADLLF ++ +P A+A +W +GN +C+ V I + + Y+ +W
Sbjct: 82 MTDKYRLHLSVADLLF-VITLPFWAVDAVA-NWYFGNFLCKAVHVI----YTVNLYSSVW 135
Query: 104 ----MSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGY 159
+S+DRYLA+ + + + WI + ++ P + F++ +D Y
Sbjct: 136 ILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFI-FANVSEADDRY 194
Query: 160 IC 161
IC
Sbjct: 195 IC 196
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 44 MINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMW 103
M + Y L L++ADLLF ++ +P A+A +W +GN +C+ V I + + Y+ +W
Sbjct: 82 MTDKYRLHLSVADLLF-VITLPFWAVDAVA-NWYFGNFLCKAVHVI----YTVNLYSSVW 135
Query: 104 ----MSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGY 159
+S+DRYLA+ + + + WI + ++ P + F++ +D Y
Sbjct: 136 ILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFI-FANVSEADDRY 194
Query: 160 IC 161
IC
Sbjct: 195 IC 196
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 44 MINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMW 103
M + Y L L++ADLLF ++ +P A+A +W +GN +C+ V I + +
Sbjct: 82 MTDKYRLHLSVADLLF-VITLPFWAVDAVA-NWYFGNFLCKAVHVIYTVNLYSSVWILAF 139
Query: 104 MSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYIC 161
+S+DRYLA+ + + + WI + ++ P + F++ +D YIC
Sbjct: 140 ISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFI-FANVSEADDRYIC 196
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%)
Query: 76 WVYGNVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTW 135
W +G+ CR ++ +SV RYLA+ P + +T+ +++R + +++ W
Sbjct: 103 WAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIW 162
Query: 136 ISSAMVCCPPLLDFSDPKYDEDG 158
++SA++ P L DG
Sbjct: 163 LASALLAIPMLFTMGLQNRSADG 185
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 12/76 (15%)
Query: 48 YILSLAMADLLFGLLVVPLSV-YPALAQDWVYGNVICRIVGYIEVTLWVICN-YTFMWM- 104
Y+L LA AD+LF + V+P + Y DW +G+ +CR V T CN Y + +
Sbjct: 58 YMLHLATADVLF-VSVLPFKISYYFSGSDWQFGSELCRFV-----TAAFYCNMYASILLM 111
Query: 105 ---SVDRYLAVRKPLR 117
S+DR+LAV P++
Sbjct: 112 TVISIDRFLAVVYPMQ 127
>pdb|1UZ6|F Chain F, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|H Chain H, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|P Chain P, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|W Chain W, Anti-Lewis X Fab Fragment Uncomplexed
Length = 217
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 16/106 (15%)
Query: 102 MWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTW--ISSAMVCCPPLLDFSDPKYDEDGY 159
+++ + + + L Y +T TR W T +SSA P + D G
Sbjct: 79 LYLQMSKVRSEDTALYYCARETGTRFDYWGQGTTLTVSSATTTAPSVYPLVPGCSDTSGS 138
Query: 160 ICMLDWGGMAAYTITLGCLVLG--PSLITIVYTYSYIFSMMRKLKS 203
++TLGCLV G P +T+ + Y + S +R + S
Sbjct: 139 ------------SVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSS 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.473
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,484,076
Number of Sequences: 62578
Number of extensions: 357284
Number of successful extensions: 919
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 56
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)