Query psy16124
Match_columns 323
No_of_seqs 247 out of 1471
Neff 11.1
Searched_HMMs 46136
Date Fri Aug 16 21:29:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16124.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16124hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 2.6E-47 5.6E-52 307.4 21.6 279 19-305 43-337 (423)
2 PHA03234 DNA packaging protein 100.0 1.6E-45 3.4E-50 309.0 20.2 269 17-304 38-317 (338)
3 KOG4220|consensus 100.0 2.2E-43 4.9E-48 284.1 10.5 278 17-301 36-485 (503)
4 PHA02834 chemokine receptor-li 100.0 4.6E-41 1E-45 282.3 22.4 265 17-301 34-307 (323)
5 PHA02638 CC chemokine receptor 100.0 8.3E-41 1.8E-45 287.8 22.8 275 17-310 104-404 (417)
6 PHA03235 DNA packaging protein 100.0 9.3E-41 2E-45 286.1 20.2 270 17-304 38-324 (409)
7 PHA03087 G protein-coupled che 100.0 5.7E-37 1.2E-41 260.1 27.4 268 18-302 47-322 (335)
8 PF00001 7tm_1: 7 transmembran 100.0 5.4E-37 1.2E-41 251.1 14.1 253 28-286 1-257 (257)
9 KOG2087|consensus 99.9 1.5E-28 3.3E-33 197.0 6.5 273 15-309 28-312 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.9 2.9E-26 6.4E-31 185.6 11.2 255 23-301 2-257 (257)
11 PF10324 7TM_GPCR_Srw: Serpent 99.9 1.8E-23 3.9E-28 176.1 19.8 273 22-301 7-315 (318)
12 PF10328 7TM_GPCR_Srx: Serpent 99.9 3.6E-20 7.9E-25 152.3 17.0 266 22-301 4-273 (274)
13 PF10323 7TM_GPCR_Srv: Serpent 99.8 3.6E-17 7.8E-22 134.4 16.7 248 41-302 29-282 (283)
14 PF05296 TAS2R: Mammalian tast 99.7 1.3E-15 2.9E-20 126.1 17.6 273 16-301 11-299 (303)
15 PF05462 Dicty_CAR: Slime mold 99.7 8E-15 1.7E-19 120.0 18.2 252 17-301 12-268 (303)
16 PF10321 7TM_GPCR_Srt: Serpent 99.5 1.5E-13 3.3E-18 113.2 13.8 250 21-301 39-305 (313)
17 PF03402 V1R: Vomeronasal orga 99.4 2.9E-12 6.3E-17 102.2 10.1 244 40-297 6-263 (265)
18 PF10317 7TM_GPCR_Srd: Serpent 99.3 5.6E-10 1.2E-14 92.7 20.2 260 19-299 6-292 (292)
19 PF11710 Git3: G protein-coupl 99.3 1.6E-10 3.5E-15 89.5 12.7 162 39-204 30-200 (201)
20 PF10326 7TM_GPCR_Str: Serpent 99.0 2.7E-11 5.8E-16 101.7 -1.4 262 20-298 7-307 (307)
21 PF02118 Srg: Srg family chemo 99.0 3.6E-09 7.8E-14 87.5 11.3 256 21-296 7-274 (275)
22 PF10292 7TM_GPCR_Srab: Serpen 99.0 1.8E-07 3.8E-12 78.9 20.0 269 22-301 27-304 (324)
23 KOG4193|consensus 98.9 1E-07 2.3E-12 85.3 17.0 246 22-302 330-580 (610)
24 PF02101 Ocular_alb: Ocular al 98.9 1.5E-07 3.3E-12 77.4 16.2 225 46-289 68-314 (405)
25 PF10327 7TM_GPCR_Sri: Serpent 98.9 3.5E-07 7.7E-12 76.1 18.9 261 18-296 15-302 (303)
26 PF10318 7TM_GPCR_Srh: Serpent 98.8 1.5E-06 3.2E-11 72.9 20.5 271 14-302 6-301 (302)
27 PF10319 7TM_GPCR_Srj: Serpent 98.8 3.9E-06 8.5E-11 68.2 19.7 260 21-296 14-309 (310)
28 PF04789 DUF621: Protein of un 98.6 2.2E-06 4.7E-11 67.4 14.6 248 30-299 34-294 (305)
29 PF00002 7tm_2: 7 transmembran 98.3 3.3E-07 7.2E-12 74.2 1.5 136 22-165 11-147 (242)
30 PF02117 7TM_GPCR_Sra: Serpent 98.1 0.00077 1.7E-08 56.9 18.1 224 22-254 31-264 (328)
31 PF10322 7TM_GPCR_Sru: Serpent 97.9 0.00064 1.4E-08 56.4 14.7 120 81-202 101-226 (307)
32 PF03125 Sre: C. elegans Sre G 97.9 0.0015 3.4E-08 56.2 17.2 42 265-306 283-324 (365)
33 PF10316 7TM_GPCR_Srbc: Serpen 97.9 0.00014 3.1E-09 59.2 10.2 106 22-127 16-125 (273)
34 KOG4564|consensus 97.8 0.001 2.2E-08 57.8 14.5 243 32-304 166-420 (473)
35 PF01534 Frizzled: Frizzled/Sm 97.4 0.021 4.6E-07 48.0 16.6 87 79-168 90-176 (328)
36 PF02076 STE3: Pheromone A rec 97.0 0.018 3.9E-07 47.4 11.5 202 37-250 18-222 (283)
37 PF03383 Serpentine_r_xa: Caen 96.6 0.00072 1.6E-08 49.3 0.8 106 48-153 6-114 (153)
38 PF11970 Git3_C: G protein-cou 96.0 0.0097 2.1E-07 38.0 3.5 66 222-293 8-74 (76)
39 PF02175 7TM_GPCR_Srb: Serpent 95.9 0.45 9.7E-06 37.5 12.6 46 76-121 78-123 (236)
40 KOG4289|consensus 92.6 2.4 5.3E-05 42.4 11.9 178 79-298 2222-2399(2531)
41 PF10325 7TM_GPCR_Srz: Serpent 85.2 10 0.00023 31.1 9.4 116 88-208 87-203 (267)
42 PF06681 DUF1182: Protein of u 84.5 7.7 0.00017 30.1 7.4 41 78-118 112-152 (226)
43 PF05296 TAS2R: Mammalian tast 78.2 40 0.00087 28.4 10.9 46 190-237 203-248 (303)
44 PF13853 7tm_4: Olfactory rece 69.4 0.37 8.1E-06 35.4 -3.2 76 130-205 6-91 (144)
45 PF15086 UPF0542: Uncharacteri 39.0 41 0.00089 21.1 2.6 32 171-202 20-52 (74)
46 PF11368 DUF3169: Protein of u 36.8 2E+02 0.0042 23.4 7.1 27 222-248 93-119 (248)
47 PF11044 TMEMspv1-c74-12: Plec 32.8 94 0.002 17.3 3.9 20 184-203 15-34 (49)
48 PF00003 7tm_3: 7 transmembran 32.1 47 0.001 26.6 2.9 28 79-106 52-79 (238)
49 PF05478 Prominin: Prominin; 30.1 2.3E+02 0.005 27.9 7.4 32 224-255 459-490 (806)
50 COG1862 YajC Preprotein transl 23.1 26 0.00055 23.7 -0.1 24 180-203 12-35 (97)
51 PF15069 FAM163: FAM163 family 21.4 1.6E+02 0.0035 21.5 3.5 24 179-202 15-38 (143)
52 KOG2575|consensus 21.3 71 0.0015 28.0 2.0 24 222-245 255-278 (510)
53 PF05391 Lsm_interact: Lsm int 20.9 55 0.0012 15.0 0.7 9 289-297 11-19 (21)
54 PF06454 DUF1084: Protein of u 20.8 5E+02 0.011 21.7 14.9 39 22-60 36-76 (281)
55 PF04854 DUF624: Protein of un 20.2 2.4E+02 0.0052 17.7 5.7 27 179-205 13-39 (77)
No 1
>KOG4219|consensus
Probab=100.00 E-value=2.6e-47 Score=307.37 Aligned_cols=279 Identities=19% Similarity=0.350 Sum_probs=235.6
Q ss_pred HHHHHHHhhcc-eEEEEEeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccCcccccccchhHHhHHHHHHHHHH
Q psy16124 19 GRRQCVDIALD-AQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVIC 97 (323)
Q Consensus 19 ~~~~~~gl~~N-~v~~~i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s 97 (323)
..+.+++++|| ++++++..+|++|+.+|+|++|||+||+++++++.++........+|.+|...|++..++......+|
T Consensus 43 g~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~f~nf~~itav~vS 122 (423)
T KOG4219|consen 43 GLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCRFVNFFPITAVFVS 122 (423)
T ss_pred HHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceeeeccccchhhhhHh
Confidence 33488899999 99999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcc----cCCCceEeeccCCc-----
Q psy16124 98 NYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKY----DEDGYICMLDWGGM----- 168 (323)
Q Consensus 98 ~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~----~~~~~~C~~~~~~~----- 168 (323)
+++++++|+|||+||.+|++.+ .+++.++.+++++|+.|++++.|..+....... +.+...|...++..
T Consensus 123 VfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~~pe~~~~~~ 200 (423)
T KOG4219|consen 123 VFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVCVTAWPEHVCPTE 200 (423)
T ss_pred HHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEEEecccccCCcc
Confidence 9999999999999999999865 689999999999999999999998876543221 12244565543322
Q ss_pred ------eeehhhhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHH
Q psy16124 169 ------AAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPY 242 (323)
Q Consensus 169 ------~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~ 242 (323)
+.|...+.++.+++|++++...|..|.+.++..+.....++ ++....+.++|+.||+++++..|.+||+|+
T Consensus 201 ~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d---~~~~~~kak~K~vkmliiVV~~FaicWlPy 277 (423)
T KOG4219|consen 201 NESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQD---RKHEQLKAKKKVVKMLIIVVVIFAICWLPY 277 (423)
T ss_pred hhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhc---hhhHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 34778888889999999999999999999998775444433 112222235779999999999999999999
Q ss_pred HHHHHHHHHhCCccccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhccccc
Q psy16124 243 IVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLCISVC 305 (323)
Q Consensus 243 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~ 305 (323)
.+..++....++..+ .+.....+....+++..|++.||+||++.|++||.++++.|+++.
T Consensus 278 h~y~il~~~~~~i~~---~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~cp 337 (423)
T KOG4219|consen 278 HIYFILNATNPEINR---KKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWCP 337 (423)
T ss_pred hHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhheee
Confidence 999999887665533 455677888899999999999999999999999999999997664
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=1.6e-45 Score=309.05 Aligned_cols=269 Identities=13% Similarity=0.149 Sum_probs=199.9
Q ss_pred HHHHHHHHHhhcc-eEEEE--EeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccCcccccccchhHHhHHHHHH
Q psy16124 17 SMGRRQCVDIALD-AQITP--WYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTL 93 (323)
Q Consensus 17 ~~~~~~~~gl~~N-~v~~~--i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 93 (323)
....++++|++|| +++++ +.+++++|+++|+|+.|||+||++.++ .+|...... .++|++|+..|++..++....
T Consensus 38 ~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~~-~~~w~fG~~lCk~~~~~~~~~ 115 (338)
T PHA03234 38 INGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLNR-EALFNFNQAFCQCVLFIYHAS 115 (338)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hCCccCchhHHHHHHHHHHHH
Confidence 3444599999999 66663 356667789999999999999999964 566655443 457999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcccCCCceEeeccCCceeehh
Q psy16124 94 WVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWGGMAAYTI 173 (323)
Q Consensus 94 ~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 173 (323)
..+|++++++||+|||+||++|.+++. ++++....+++.|+.+++.++|.+........+.+...|..+++....+..
T Consensus 116 ~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~~~~C~~~~~~~~~~~~ 193 (338)
T PHA03234 116 CSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGNYGKCNIHISSKKAYDL 193 (338)
T ss_pred HHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCCCCCcCcccCCcchhhHH
Confidence 999999999999999999999988643 233444455667999999999987543322222223568776543332222
Q ss_pred h------hhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHH
Q psy16124 174 T------LGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKL 247 (323)
Q Consensus 174 ~------~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~ 247 (323)
. ...+.+++|+++++++|..|.+++++.++ ++++|++|++.+++++|++||+|+.+..+
T Consensus 194 ~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~~---------------~~~~k~~k~i~~vv~vF~iCWlPy~iv~l 258 (338)
T PHA03234 194 FIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALTE---------------KKHKKTLFFIRILILSFLCIQIPNIAILI 258 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------------hhhhhhhhHHHHHHHHHHHHHhHHHHHHH
Confidence 1 12234689999999999999988866310 12467899999999999999999999887
Q ss_pred HHHHhCC--ccccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhcccc
Q psy16124 248 YEYLSGH--IISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLCISV 304 (323)
Q Consensus 248 ~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~ 304 (323)
+...... ..++...........++..++++||++||++|.+.+++||+++++.+++.
T Consensus 259 ~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~~~ 317 (338)
T PHA03234 259 CEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQDF 317 (338)
T ss_pred HHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 6554321 11111112234456788899999999999999999999999999888764
No 3
>KOG4220|consensus
Probab=100.00 E-value=2.2e-43 Score=284.14 Aligned_cols=278 Identities=19% Similarity=0.301 Sum_probs=237.6
Q ss_pred HHHHHHHHHhhcc-eEEEEEeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccCcccccccchhHHhHHHHHHHH
Q psy16124 17 SMGRRQCVDIALD-AQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWV 95 (323)
Q Consensus 17 ~~~~~~~~gl~~N-~v~~~i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 95 (323)
+.+.+.++.++|| +|.+.+.-++++++..|+|+.+||+||++.+.+.+|++..+.+.+.|+.|...|.+...+-++...
T Consensus 36 v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalDYvaSN 115 (503)
T KOG4220|consen 36 VTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALDYVASN 115 (503)
T ss_pred hhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHHHHhhh
Confidence 3444588899999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcc--cCCCceEeeccCCceeehh
Q psy16124 96 ICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKY--DEDGYICMLDWGGMAAYTI 173 (323)
Q Consensus 96 ~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~~~C~~~~~~~~~~~~ 173 (323)
+|++.++.|++|||+.|.+|+.|+...|.+++..++++.|++++++..|.++.|..... .-....|..+.-......+
T Consensus 116 ASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFlsnp~iTf 195 (503)
T KOG4220|consen 116 ASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFLSNPAITF 195 (503)
T ss_pred hhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEeecCceeeh
Confidence 99999999999999999999999999999999999999999999999887776543211 1234569988877777777
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCC----------------------------------------------
Q psy16124 174 TLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPI---------------------------------------------- 207 (323)
Q Consensus 174 ~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~---------------------------------------------- 207 (323)
...+..|-+|..+|.++|.+|++..+++.+....
T Consensus 196 GTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~~p~~~~~~~~~~~~~~~~ 275 (503)
T KOG4220|consen 196 GTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRSSPSEEGKREPLTNGCISN 275 (503)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCcccccccccCCCCCCCccccccccCCCCcccc
Confidence 7888889999999999999999999875321000
Q ss_pred -----------------------------------------------------------------------C--------
Q psy16124 208 -----------------------------------------------------------------------H-------- 208 (323)
Q Consensus 208 -----------------------------------------------------------------------~-------- 208 (323)
+
T Consensus 276 ~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~~~D~~~~~~~i~i~~~~~~p~s~sc 355 (503)
T KOG4220|consen 276 SKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQRKVDEEGLNTLIQIPTDQMLPKSDSC 355 (503)
T ss_pred ccCcccCCccCCCCccccccccccccccccCCccccccccccccceeccCCCCcCCCCccccccccccccccCCCCCCcc
Confidence 0
Q ss_pred ----------------------ch----------------------hhhHHHhhccCCCcchhhHHHHHHHHHHHHHHHH
Q psy16124 209 ----------------------DK----------------------EYATALAENLSNPSHNMSFSLIMTFWLSWLPYIV 244 (323)
Q Consensus 209 ----------------------~~----------------------~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i 244 (323)
.. +++++....+|+|+++++.++.+.|++||.||.+
T Consensus 356 ~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~rErKAAkTLsAILlAFIiTWtPYNI 435 (503)
T KOG4220|consen 356 VPIFSATDTDKTTDTNSGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLVRERKAAKTLSAILLAFILTWTPYNI 435 (503)
T ss_pred cccccccccccCCccCccccccccCccccccchhhhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHccccee
Confidence 00 0000001146789999999999999999999999
Q ss_pred HHHHHHHhCCccccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhc
Q psy16124 245 VKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLC 301 (323)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~ 301 (323)
+.++..+...-.+ ..+..+..++.++||.+||+.|.++|+.||+.+++++
T Consensus 436 mVlv~tFC~~CiP-------~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL 485 (503)
T KOG4220|consen 436 MVLVNTFCKNCIP-------ETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLL 485 (503)
T ss_pred eeehHhhcccccc-------hhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhh
Confidence 9999999876644 7788899999999999999999999999999999998
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=100.00 E-value=4.6e-41 Score=282.33 Aligned_cols=265 Identities=14% Similarity=0.273 Sum_probs=200.1
Q ss_pred HHHHHHHHHhhcc-eEEEEEeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccCcccccccchhHHhHHHHHHHH
Q psy16124 17 SMGRRQCVDIALD-AQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWV 95 (323)
Q Consensus 17 ~~~~~~~~gl~~N-~v~~~i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 95 (323)
....++++|++|| ++++++.++++ +++.|+|+.|||++|++. .+.+|..+.... ++|.+|+..|++..++...+..
T Consensus 34 ~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~~-~~w~~g~~~C~~~~~~~~~~~~ 110 (323)
T PHA02834 34 FYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHNDL-NEWIFGEFMCKLVLGVYFVGFF 110 (323)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHHc-CCcCCcchHHHhHHHHHHHHHH
Confidence 3444589999999 77777666555 457899999999999986 668888766544 4799999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcccCCCceEeeccCCce--e---
Q psy16124 96 ICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWGGMA--A--- 170 (323)
Q Consensus 96 ~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~--~--- 170 (323)
+|++++++||+|||.+|++|.+++. .+.+++...++.+|+.+++.+.|+...+... ...+...|..+..... .
T Consensus 111 ~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~-~~~~~~~C~~~~~~~~~~~~~~ 188 (323)
T PHA02834 111 SNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVLYYVD-NTDNLKQCIFNDYHENFSWSAF 188 (323)
T ss_pred HHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHHHHHhc-cCCCceEEeccCCccchHHHHH
Confidence 9999999999999999999998754 3456667778899999999999887644322 1223346864332211 1
Q ss_pred ehhhhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16124 171 YTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEY 250 (323)
Q Consensus 171 ~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~ 250 (323)
+.....+..+++|+++++++|.+|.+.+++++++ +++|..|+++.+++.|++||+|+.+..++..
T Consensus 189 ~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~~---------------~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~ 253 (323)
T PHA02834 189 FNFEINIFGIVIPLIILIYCYSKILYTLKNCKNK---------------NKTRSIKIILTVVTFTVVFWVPFNIVLFINS 253 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---------------ccceEEeehhHHHHHHHHHHhhHHHHHHHHH
Confidence 1222345678999999999999999998775321 1467889999999999999999999888766
Q ss_pred HhCCccccccc---hhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhc
Q psy16124 251 LSGHIISFIPQ---LHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLC 301 (323)
Q Consensus 251 ~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~ 301 (323)
+.+......+. ........++.+++++||++||++|++.+++||+++++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~ 307 (323)
T PHA02834 254 LQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMF 307 (323)
T ss_pred HHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHH
Confidence 54322110011 1112234577889999999999999999999999999988
No 5
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=100.00 E-value=8.3e-41 Score=287.76 Aligned_cols=275 Identities=17% Similarity=0.309 Sum_probs=211.8
Q ss_pred HHHHHHHHHhhcc-eEEEEEeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccCcccccccchhHHhHHHHHHHH
Q psy16124 17 SMGRRQCVDIALD-AQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWV 95 (323)
Q Consensus 17 ~~~~~~~~gl~~N-~v~~~i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 95 (323)
.....+++|++|| ++++++ .+|++|+++++++.|||++|+++ ++.+|+.+... .++|.+|+..|++..++...+..
T Consensus 104 ~y~lvfvlgliGN~LVl~il-~~k~lrt~t~i~llnLAisDLl~-~l~lPf~i~~~-~~~W~fg~~~Ck~~~~l~~~~~~ 180 (417)
T PHA02638 104 FYIIIFILGLFGNAAIIMIL-FCKKIKTITDIYIFNLAISDLIF-VIDFPFIIYNE-FDQWIFGDFMCKVISASYYIGFF 180 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhccCCCHhHHHHHHHHHHHHHH-HHHHHHHHHHH-hccccccccchhhHHHHHHHHHH
Confidence 3444599999999 666554 45788999999999999999988 46888887654 46799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCC-------ccc--CCCceEeeccC
Q psy16124 96 ICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDP-------KYD--EDGYICMLDWG 166 (323)
Q Consensus 96 ~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-------~~~--~~~~~C~~~~~ 166 (323)
+++++++++++|||+||++|.++++..+++.....++++|+++++.++|+.+..+.. +.+ .....|....+
T Consensus 181 ~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 260 (417)
T PHA02638 181 SNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQCTLIED 260 (417)
T ss_pred HHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCeeeeecc
Confidence 999999999999999999999987777777778888999999999999987754321 111 12346865443
Q ss_pred Cce--------eehhhhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHH
Q psy16124 167 GMA--------AYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLS 238 (323)
Q Consensus 167 ~~~--------~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~ 238 (323)
... .+.....++.+++|++++++||.+|++.+++.+++ +++|..|++..++++|++|
T Consensus 261 ~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~~---------------~k~k~~rli~~ivi~f~lc 325 (417)
T PHA02638 261 NEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKKS---------------KKTKSIIIVSIIIICSLIC 325 (417)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------------ccchhhhhHHHHHHHHHHH
Confidence 221 12223345678899999999999999998764321 1356779999999999999
Q ss_pred HHHHHHHHHHHHHhCCcc--------ccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhccccccCCCC
Q psy16124 239 WLPYIVVKLYEYLSGHII--------SFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLCISVCCKQKS 310 (323)
Q Consensus 239 ~~P~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~~~~~ 310 (323)
|+|+.+..++..+..... ++.. ........++..++++|+++||++|++.+++|||++++++++..+.-+-
T Consensus 326 W~Py~i~~ll~~~~~~~~~~~~~~~~~c~~-~~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~~~~~~~~~~~ 404 (417)
T PHA02638 326 WIPLNIVILFATMYSFKGFNSIISEHICGF-IKLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHLLMIFRNIFTNAKF 404 (417)
T ss_pred HhhHHHHHHHHHHHHhhccccccccccccH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHHHHHhcccccc
Confidence 999999988876643210 1101 1234456678899999999999999999999999999998665544443
No 6
>PHA03235 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=9.3e-41 Score=286.12 Aligned_cols=270 Identities=11% Similarity=0.148 Sum_probs=198.6
Q ss_pred HHHHHHHHHhhcc-eEEEEEee-cCC-cchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccCcccccccchhHHhHHHHHH
Q psy16124 17 SMGRRQCVDIALD-AQITPWYS-AQC-PGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTL 93 (323)
Q Consensus 17 ~~~~~~~~gl~~N-~v~~~i~~-~~~-~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 93 (323)
....++++|++|| ++++++.. +++ .++.+++|+.|||++|++. ++.+|+.+... ...|..++..|++..++....
T Consensus 38 ~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~~-~~~~~~g~~~Ck~~~~l~~~~ 115 (409)
T PHA03235 38 INLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLSN-QGLLSGSVAGCKFASLLYYAS 115 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHhc-CccccCCCCeehhHHHHHHHH
Confidence 3444588999999 77766433 333 3466789999999999987 56888776432 122344568999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCC-----Ccc-cCCCceEeeccCC
Q psy16124 94 WVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSD-----PKY-DEDGYICMLDWGG 167 (323)
Q Consensus 94 ~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-----~~~-~~~~~~C~~~~~~ 167 (323)
..+|++++++||+|||++|++|.+++. .+++++..+++++|+.+++.++|+...... ... ..+...|...+..
T Consensus 116 ~~~Si~tL~~ISiDRY~aI~~p~~~~~-~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 194 (409)
T PHA03235 116 CTVGFATVALIAADRYRVIHQRTRARS-SAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFRA 194 (409)
T ss_pred HHHHHHHHHHHHHHHHHHeechhhccC-cccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcceeeEeCCc
Confidence 999999999999999999999986544 467888888999999999999986543211 111 1234568654433
Q ss_pred ce------eehhhhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHH
Q psy16124 168 MA------AYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLP 241 (323)
Q Consensus 168 ~~------~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P 241 (323)
.. .|.....++.+++|+++++++|.+|++.+++++++ +++|..+++.++++.|++||+|
T Consensus 195 ~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~~---------------~~~k~~~~v~iivv~F~iCWlP 259 (409)
T PHA03235 195 DQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASYK---------------KRSRTLTFVCILLLSFLCLQTP 259 (409)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---------------cchhhhhhHHHHHHHHHHHHhH
Confidence 21 23444556678999999999999999999875321 1345667888889999999999
Q ss_pred HHHHHHHHHHhCCc--cccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhcccc
Q psy16124 242 YIVVKLYEYLSGHI--ISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLCISV 304 (323)
Q Consensus 242 ~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~ 304 (323)
+.+..++..+.... .++...........+..+++++|+++||+||++++++||+++++.+++.
T Consensus 260 y~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~~ 324 (409)
T PHA03235 260 FVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRGE 324 (409)
T ss_pred HHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhhh
Confidence 99988876553211 1111111223456788899999999999999999999999999988654
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=100.00 E-value=5.7e-37 Score=260.12 Aligned_cols=268 Identities=17% Similarity=0.289 Sum_probs=209.4
Q ss_pred HHHHHHHHhhcc-eEEEEEeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccCcccccccchhHHhHHHHHHHHH
Q psy16124 18 MGRRQCVDIALD-AQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVI 96 (323)
Q Consensus 18 ~~~~~~~gl~~N-~v~~~i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 96 (323)
....+++|++|| ++++++.++ ++|++.++++.|||++|++.++ ..|.........+|..++..|+...++......+
T Consensus 47 ~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 124 (335)
T PHA03087 47 YSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIVSGLYYIGFYN 124 (335)
T ss_pred HHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 344488999999 877777777 8899999999999999998854 5666665555677888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcccCCCceEeeccCCce-ee----
Q psy16124 97 CNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWGGMA-AY---- 171 (323)
Q Consensus 97 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~-~~---- 171 (323)
|.++++++++|||++|++|.+|+...+.+++..+++++|+++++.+.|+....... .+.+...|..+++... .+
T Consensus 125 S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~-~~~~~~~C~~~~~~~~~~~~~~~ 203 (335)
T PHA03087 125 SMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTK-KDHETLICCMFYNNKTMNWKLFI 203 (335)
T ss_pred HHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeee-ccCCCceEEecCCCcchhHHHHH
Confidence 99999999999999999999998888999999999999999999998877654432 2334556776654221 11
Q ss_pred hhhhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16124 172 TITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYL 251 (323)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~ 251 (323)
.....+..+++|.++++++|.++.+.+++++++ ++++|..|++..+++.|++||+|+.+..++...
T Consensus 204 ~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~~--------------~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~ 269 (335)
T PHA03087 204 NFEINIIGMLIPLTILLYCYSKILITLKGINKS--------------KKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSL 269 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------------hhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112345568899999999999999888765321 124678899999999999999999988776654
Q ss_pred hCCcc--ccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhcc
Q psy16124 252 SGHII--SFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLCI 302 (323)
Q Consensus 252 ~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~ 302 (323)
..... .+...........+...+..+|+++||+||++++++||+++++.++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~ 322 (335)
T PHA03087 270 HILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLK 322 (335)
T ss_pred HHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHH
Confidence 32111 1111122234556788899999999999999999999999999883
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=100.00 E-value=5.4e-37 Score=251.08 Aligned_cols=253 Identities=25% Similarity=0.459 Sum_probs=212.4
Q ss_pred cc-eEEEEEeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccCcccccccchhHHhHHHHHHHHHHHHHHHHHHH
Q psy16124 28 LD-AQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMSV 106 (323)
Q Consensus 28 ~N-~v~~~i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iai 106 (323)
|| +++.++.++|++|++.++++.|||++|++.++...|........++|..++..|++..++..+...++.++++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 78 77788888999999999999999999999998888888877766788899999999999999999999999999999
Q ss_pred HHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcccCC-CceEeeccCCce--eehhhhhHHhhhHH
Q psy16124 107 DRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDED-GYICMLDWGGMA--AYTITLGCLVLGPS 183 (323)
Q Consensus 107 dRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~~C~~~~~~~~--~~~~~~~~~~~~~p 183 (323)
|||++|++|.+|++..+++++...++++|+++++.+.|+...........+ ...|..+.+... .+.....+..+++|
T Consensus 81 dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~p 160 (257)
T PF00001_consen 81 DRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSSSQIYFIYFFIVFFILP 160 (257)
T ss_dssp HHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSHHHHHHHHHHHHHTHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999998999999999999999999999776443333332 578998877653 56666777788999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchh
Q psy16124 184 LITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLH 263 (323)
Q Consensus 184 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~ 263 (323)
+++++++|..+.+.+|+++++....++ +..+.+.++++|.++++..+++.|++||+|+.+..++....+.. + . .
T Consensus 161 ~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~-~---~-~ 234 (257)
T PF00001_consen 161 LIIILICYIRILRKLRRQRKRIKSQSS-SSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSS-S---L-I 234 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTCCHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTS-T---C-S
T ss_pred eeeeeeecccccccccccccccccccc-cccccccccccccccccccccccccccCCceeHHHHHHHHcCcc-c---h-h
Confidence 999999999999999998776554332 12222233467889999999999999999999999988887766 1 1 3
Q ss_pred hHHHHHHHHHHHHHhchhhhhhh
Q psy16124 264 FLVLHFLVVWLGILNSVWKGIVL 286 (323)
Q Consensus 264 ~~~~~~~~~~l~~~~~~~nP~iY 286 (323)
......+..++.++|+++||++|
T Consensus 235 ~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 235 SSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhCcEEC
Confidence 47788899999999999999998
No 9
>KOG2087|consensus
Probab=99.95 E-value=1.5e-28 Score=196.96 Aligned_cols=273 Identities=18% Similarity=0.290 Sum_probs=209.1
Q ss_pred hhHHHHHHHHHhhcc-eEEEEEeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhcc-C-------cccccccchhH
Q psy16124 15 LLSMGRRQCVDIALD-AQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALA-Q-------DWVYGNVICRI 85 (323)
Q Consensus 15 ~~~~~~~~~~gl~~N-~v~~~i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~-~-------~~~~~~~~C~~ 85 (323)
....+++..++++|| +++......+...++...++.|||++|+++++............ + .|. +...|++
T Consensus 28 Ri~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~-tg~gC~~ 106 (363)
T KOG2087|consen 28 RISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQ-TGLGCPV 106 (363)
T ss_pred eehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhh-hcCCCch
Confidence 455667799999999 88888888888888999999999999999987655444433211 1 244 4478999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcccCCCceEeecc
Q psy16124 86 VGYIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDW 165 (323)
Q Consensus 86 ~~~~~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 165 (323)
.+|+..+..-.|+++++.+++||+++|.+|++-.+....+....+++..|+.+++.+..|+++...+ .....|.+-+
T Consensus 107 aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y---~~~~vClPL~ 183 (363)
T KOG2087|consen 107 AGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSY---GASSVCLPLH 183 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCC---cccceeeecc
Confidence 9999999999999999999999999999999987776677788899999999999999998874432 2336786632
Q ss_pred ---CCceeehhhhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHH
Q psy16124 166 ---GGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPY 242 (323)
Q Consensus 166 ---~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~ 242 (323)
+....|.....+....+-++++..+|++++..+++...+....+ .+..+.+..++++-.+||.|.
T Consensus 184 ~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~~~~------------~~~akr~a~LvfTd~icw~Pi 251 (363)
T KOG2087|consen 184 IEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSATLIS------------TSVAKRMAFLVFTDCICWCPI 251 (363)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCccccch------------hhhhhCeeEEEEccccccCch
Confidence 22332555556666677789999999999999887654433221 134566677888999999999
Q ss_pred HHHHHHHHHhCCccccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhccccccCCC
Q psy16124 243 IVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLCISVCCKQK 309 (323)
Q Consensus 243 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~~~~ 309 (323)
.+..+...++.+..+ ......+..++.-+|+++||++|.+.++.||+.++.+.++..++++
T Consensus 252 ~f~~~~al~~~~li~------~~~sk~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k~~~~k~ 312 (363)
T KOG2087|consen 252 AFFKFSALIGVELIS------VSYSKWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSKVGLCKN 312 (363)
T ss_pred heeeeHHhcCCcccC------hhhceeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhhcchhhh
Confidence 999988888776644 1222234455677899999999999999999999998877644433
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.94 E-value=2.9e-26 Score=185.60 Aligned_cols=255 Identities=16% Similarity=0.156 Sum_probs=186.6
Q ss_pred HHHhhcc-eEEEEEeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccCcccccccchhHHhHHHHHHHHHHHHHH
Q psy16124 23 CVDIALD-AQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTF 101 (323)
Q Consensus 23 ~~gl~~N-~v~~~i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l 101 (323)
++|++|| .++.++.++|++|++.++++..+|++|++.++..+|...... ++.......|-...+...++..+....+
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~~~qs~~~ 79 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQCAQSVIM 79 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999 999999999999999999999999999999877777766433 2234566789999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcccCCCceEeeccCCceeehhhhhHHhhh
Q psy16124 102 MWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWGGMAAYTITLGCLVLG 181 (323)
Q Consensus 102 ~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~ 181 (323)
++|++||++||+.|.+|++..+.+..........+.+.......+.. ..++....|.+.................+
T Consensus 80 l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~~~~~----~~~~~~~~C~pp~a~~~~~~~~~~~~~~~ 155 (257)
T PF10320_consen 80 LAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTVIGFLY----RDDETIVICNPPLAFHGTASQIWSYSNII 155 (257)
T ss_pred HHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHhheeEe----cCCcccccCCCccccCccHHHHHHHHHHH
Confidence 99999999999999999998888765555555555554443322221 12234567877655433222223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccc
Q psy16124 182 PSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQ 261 (323)
Q Consensus 182 ~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~ 261 (323)
+. +++++.|.......+++.++.. ++++|..|.+..+++.|+.+|.-..+...+......+ .
T Consensus 156 in-v~tvivY~i~~~~~~~k~~~~~------------~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~-----~ 217 (257)
T PF10320_consen 156 IN-VITVIVYIITIIIFKRKSRSNS------------SRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLD-----G 217 (257)
T ss_pred HH-HHHHHHHHHHHHHHHHHccccc------------hhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCc-----H
Confidence 33 3455667777777766554311 1135677888999999999999888877776654443 2
Q ss_pred hhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhc
Q psy16124 262 LHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLC 301 (323)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~ 301 (323)
+..........++...+.+.|.++|.++|+|||++++++|
T Consensus 218 ~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 218 ETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 2234567777899999999999999999999999999875
No 11
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.92 E-value=1.8e-23 Score=176.11 Aligned_cols=273 Identities=15% Similarity=0.125 Sum_probs=199.8
Q ss_pred HHHHhhcceEEEEEeecCCcch-hHHHHHHHHHHHHHHHHHhhhhhHHhhhccC---c--cccc----ccchhHHhHHHH
Q psy16124 22 QCVDIALDAQITPWYSAQCPGE-MINYYILSLAMADLLFGLLVVPLSVYPALAQ---D--WVYG----NVICRIVGYIEV 91 (323)
Q Consensus 22 ~~~gl~~N~v~~~i~~~~~~r~-~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~---~--~~~~----~~~C~~~~~~~~ 91 (323)
.++|+++|+..+.+..+|.+|+ +.|.+++.+|++|++..+..++......... + .+.. .....+...+..
T Consensus 7 ~~~g~~~N~~h~~VLtrk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l~~ 86 (318)
T PF10324_consen 7 SIFGLFINIFHLIVLTRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESLSD 86 (318)
T ss_pred eHHHHHHHHHHhhhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHH
Confidence 5789999977777788888886 8999999999999999888777766443322 1 1111 123334567788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCc--ccccccchhhhHHHHHHHHHHhhhhcccccCCCccc---CCCceEeecc-
Q psy16124 92 TLWVICNYTFMWMSVDRYLAVRKPLRYE--TVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYD---EDGYICMLDW- 165 (323)
Q Consensus 92 ~~~~~s~~~l~~iaidRy~ai~~p~~~~--~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~~~C~~~~- 165 (323)
.+...|.|..++||+.|++++.+|.+.+ +..+++.+..++..+.+++.+.+.+..+.....+.+ .....|....
T Consensus 87 ~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~~~~ 166 (318)
T PF10324_consen 87 IFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSGFPE 166 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceeeccc
Confidence 8889999999999999999999998753 456777888888888888888888877554332211 1223475110
Q ss_pred ----CCc----------------eeehhhhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcc
Q psy16124 166 ----GGM----------------AAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSH 225 (323)
Q Consensus 166 ----~~~----------------~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (323)
+.+ +.+....++..-++|.++..+..+.+.+.+|+.++++++..+++ ++++.+.+
T Consensus 167 ~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~~-----~~~~~~tt 241 (318)
T PF10324_consen 167 NYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSSK-----SKKSDRTT 241 (318)
T ss_pred cccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccccc-----cccccchH
Confidence 000 01222233444678999999999999999998776655444221 23467889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhc
Q psy16124 226 NMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLC 301 (323)
Q Consensus 226 ~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~ 301 (323)
+++..++..|+++.+|..+..++.....+..+ ..........+...+..+|+..|++||..+|++||+++|++|
T Consensus 242 ~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f 315 (318)
T PF10324_consen 242 KLILFMTISFLISELPQGIIFLLESFFEEDSG--LIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLF 315 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHh
Confidence 99999999999999999999999887443311 133345667788999999999999999999999999999999
No 12
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.85 E-value=3.6e-20 Score=152.31 Aligned_cols=266 Identities=14% Similarity=0.176 Sum_probs=180.5
Q ss_pred HHHHhhcc-eEEEEEeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccCccccccc-chhHHhHHHHHHHHHHHH
Q psy16124 22 QCVDIALD-AQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNV-ICRIVGYIEVTLWVICNY 99 (323)
Q Consensus 22 ~~~gl~~N-~v~~~i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~~~s~~ 99 (323)
.++|++.| +++..+.+.+++|++.+.+..+.|++|.+.++..+.........+.....+. .-...+.....++..+.+
T Consensus 4 s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~~ 83 (274)
T PF10328_consen 4 SIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGPL 83 (274)
T ss_pred eHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHHH
Confidence 57899999 8888889999999999999999999999997754443333322222222222 344557888889999999
Q ss_pred HHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCC-CcccCCCceEeeccC-CceeehhhhhH
Q psy16124 100 TFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSD-PKYDEDGYICMLDWG-GMAAYTITLGC 177 (323)
Q Consensus 100 ~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~~~-~~~~~~~~~~~ 177 (323)
+.++||++|+.|+..|.+|++..+.+.+..+++..|++++....+.....+. ..++++...-..+.+ .-..+......
T Consensus 84 ~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~~~~~~C~~~~~~~~~ 163 (274)
T PF10328_consen 84 SHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSYPTDPPCGNYSWYFDF 163 (274)
T ss_pred HHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeecCCCCccchhhhHHHH
Confidence 9999999999999999999999999999999999999999776665543222 222222211111111 11222222222
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy16124 178 LVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIIS 257 (323)
Q Consensus 178 ~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~ 257 (323)
.....-.+++..++..++.++++.+++....+++.++ ++++|.+..++...--..|.+.+.-+....-+ .++.
T Consensus 164 ~~~~~~~~~~~~lni~t~ikl~~~~~~~~~~~~~s~~--r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~---~~~~-- 236 (274)
T PF10328_consen 164 YKNFILVIISNILNIITFIKLRKFRKKISVSSSESKK--RRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPL---SSNR-- 236 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccc--
Confidence 2233334557778888888888776666222222222 22336778888888888888888777655322 1111
Q ss_pred cccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhc
Q psy16124 258 FIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLC 301 (323)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~ 301 (323)
......+.....+..++|++|+...|+|+|+..++..
T Consensus 237 -------~~~F~~~t~~w~~~h~~DG~i~l~fN~~~r~~~~~~~ 273 (274)
T PF10328_consen 237 -------WWQFFCTTFSWVLVHALDGLIMLIFNSEIRRKIRKKK 273 (274)
T ss_pred -------HHHHHHHHHHHHHHHHhcceeEeEEcHHHHHHHHhcc
Confidence 4444555555777788999999999999999998754
No 13
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.76 E-value=3.6e-17 Score=134.35 Aligned_cols=248 Identities=17% Similarity=0.233 Sum_probs=159.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhHHhhhcc--Cc--ccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q psy16124 41 PGEMINYYILSLAMADLLFGLLVVPLSVYPALA--QD--WVYGNVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPL 116 (323)
Q Consensus 41 ~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~--~~--~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~p~ 116 (323)
.+++.+-++.+.+++|++..+............ .+ ...++...++.....+..........+.+|++||.||++|.
T Consensus 29 ~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~~~~~~gi~lls~nR~~ai~~P~ 108 (283)
T PF10323_consen 29 FKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYFLYIQCIGIVLLSLNRYLAICFPT 108 (283)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHhhhheEEeec
Confidence 568999999999999999976654443332221 11 11222335666667777888889999999999999999999
Q ss_pred -CCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcccCCCce-EeeccCCceeehhhhhHHhhhHHHHHHHHHHHHH
Q psy16124 117 -RYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYI-CMLDWGGMAAYTITLGCLVLGPSLITIVYTYSYI 194 (323)
Q Consensus 117 -~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-C~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i 194 (323)
++++..++.+...+++.-|+.+++.+.|.+.. .+..++..+.. -..|.+..+ ..............+..+++|+.+
T Consensus 109 ~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~-~~~~f~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~cv~~iv~Y~~i 186 (283)
T PF10323_consen 109 SRHTKFWQPAKIWIIILIQWIPPLLISLPFFFD-TDFYFDNEENMSLFVDPEFIQ-RNFLIAFIFVSVTCVICIVCYGII 186 (283)
T ss_pred HHHhhhccccchhheeeeeehhhhhheeeeecc-CceeeecccceeeecCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888899999999999999885543 33333333321 111211111 222233334445566788899999
Q ss_pred HHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhHHHHHHHHHH
Q psy16124 195 FSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWL 274 (323)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 274 (323)
...+||+.+ .++++.+++.++|.+.+.+..+....+++.. -+.+.........+. +........-..+
T Consensus 187 ~~~iRk~~k-----~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~~-~~~~~~~~~~~~~~~------~~~~~~r~~y~~~ 254 (283)
T PF10323_consen 187 FIFIRKRNK-----KKSKSSSRSRRREIRLAIQVFILFCAFFVIL-VYYIFSNYFAQNFNT------DPIFYLRAFYPIL 254 (283)
T ss_pred HHHHHHhhh-----hhhHhhhhhhhHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccc------hHHHHHHHHHHHH
Confidence 999998764 1111223333345666666655555444433 333333333332222 1123344466677
Q ss_pred HHHhchhhhhhhhcCCHHHHHHHHHhcc
Q psy16124 275 GILNSVWKGIVLILMSPQFRIMLRLLCI 302 (323)
Q Consensus 275 ~~~~~~~nP~iY~~~~~~fR~~~~~~~~ 302 (323)
.-+.|.+||+.-...|+++||++++.++
T Consensus 255 ~~~~s~inP~~LLi~n~~lr~~~~~~~~ 282 (283)
T PF10323_consen 255 NGLLSFINPWMLLIFNKDLRKQVRRMLK 282 (283)
T ss_pred HHHHHhhhhHHhhhccHHHHHHHHHHcC
Confidence 8889999999999999999999998874
No 14
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.70 E-value=1.3e-15 Score=126.08 Aligned_cols=273 Identities=10% Similarity=0.071 Sum_probs=168.0
Q ss_pred hHHHHHHHHHhhcc-eEEEE---EeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccCcccccccchhHHhHHHH
Q psy16124 16 LSMGRRQCVDIALD-AQITP---WYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEV 91 (323)
Q Consensus 16 ~~~~~~~~~gl~~N-~v~~~---i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 91 (323)
......+++|++|| .+..+ -+.+++.-+|.+..+.+||+++++................+....+..++...++..
T Consensus 11 ~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (303)
T PF05296_consen 11 IILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKIIDFLWM 90 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHH
Confidence 34445599999999 33333 333444457999999999999999876655555555545554556678889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCC-----cccccccchhhhHHHHHHHHH--HhhhhcccccCCC-cccCCCceEee
Q psy16124 92 TLWVICNYTFMWMSVDRYLAVRKPLRY-----ETVQTKTRCQCWMAFTWISSA--MVCCPPLLDFSDP-KYDEDGYICML 163 (323)
Q Consensus 92 ~~~~~s~~~l~~iaidRy~ai~~p~~~-----~~~~~~~~~~~~~~~~w~~~~--~~~~~~~~~~~~~-~~~~~~~~C~~ 163 (323)
+....|.|..+++++--++.|....+. +++. .+-....+.+.+++++ ....|........ +..+.......
T Consensus 91 f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI-~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~~~~~~~N~t~ 169 (303)
T PF05296_consen 91 FSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRI-SKVVPWLLLGSLLISFLNLLSIPLFIDNHINNNNTNNSRNSTS 169 (303)
T ss_pred HHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhheeeeeccccccCCCcceE
Confidence 999999999999999999999865431 1111 1122334567777777 3344433221100 00011111111
Q ss_pred c---cCCceeehhhhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHH
Q psy16124 164 D---WGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWL 240 (323)
Q Consensus 164 ~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~ 240 (323)
+ ......+..........+|+++++.+...+...++||.++.+.+..+.+. .+.+.+.|+.|++....+.| .
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~-ps~~aH~~a~k~~~sfl~ly----~ 244 (303)
T PF05296_consen 170 NFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRD-PSTEAHIRAIKTMISFLILY----I 244 (303)
T ss_pred EeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC-CCcHHHHHHHHHHHHHHHHH----H
Confidence 1 11112223333346788899999999999988888876665543322111 11111334555555544444 4
Q ss_pred HHHHHHHHHHHhC-CccccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhc
Q psy16124 241 PYIVVKLYEYLSG-HIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLC 301 (323)
Q Consensus 241 P~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~ 301 (323)
.+.+..++..... ...+ .....+......+++..+|++-++.|+++|+++++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il 299 (303)
T PF05296_consen 245 IYFLSLILSFLSFFFPEN-------SIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKIL 299 (303)
T ss_pred HHHHHHHHHHHHHHhccc-------cHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 4444444432221 1111 3445677788999999999999999999999999988
No 15
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=99.67 E-value=8e-15 Score=119.99 Aligned_cols=252 Identities=12% Similarity=0.141 Sum_probs=165.5
Q ss_pred HHHHHHHHHhhcc-eEEEEEeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccCcccccccchhHHhHHHHHHHH
Q psy16124 17 SMGRRQCVDIALD-AQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWV 95 (323)
Q Consensus 17 ~~~~~~~~gl~~N-~v~~~i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 95 (323)
+.....+++++|- +++......|++|++.+-++.-++++|++..+........ ++...++..|.+++++..++..
T Consensus 12 i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~----~~~~~~s~lC~~Qafliq~f~~ 87 (303)
T PF05462_consen 12 IELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLS----PSAGENSFLCQFQAFLIQFFML 87 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhc----ccCCCCCcchhhHhHHHHHhhH
Confidence 4444578888999 8888999999999999999999999999987554432221 2223456789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcccCCCceEeeccCCceeehhhh
Q psy16124 96 ICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWGGMAAYTITL 175 (323)
Q Consensus 96 ~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~ 175 (323)
++.+-.++||++=|+.++++... .++.-+.....+|.++++.+..++.. . .++....+|..+.+... + .
T Consensus 88 as~lWt~~iA~nly~~~~~~~~~----~~k~e~~Y~l~~wGiPli~a~i~l~~-~--~~g~~G~WCWI~~~~~~-~---r 156 (303)
T PF05462_consen 88 ASFLWTLCIAFNLYLTFVKRYDE----LEKLEKYYHLVCWGIPLIPAVIPLIG-N--DYGPAGNWCWIKPEWDV-W---R 156 (303)
T ss_pred HHHHHHHHHHHHhhheeEEcCcc----HHHHHHHHHHHHHHHHHHHHHHHHHc-c--CCCCCCCceeecCCCcc-h---H
Confidence 99999999999999999875332 23344556788999999988776543 2 34555669998764321 1 1
Q ss_pred hHHhhhHHHHHHHH----HHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16124 176 GCLVLGPSLITIVY----TYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYL 251 (323)
Q Consensus 176 ~~~~~~~p~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~ 251 (323)
.. .+..|+.+++. .+....+...+..+.. ..++ +.+. .+....+..-.++|++||.|..+..+.+.+
T Consensus 157 ~~-lfY~Pl~ii~~~~~ilv~i~~~~~y~~~~~~-~sd~-~~~~------~~~~~kL~~Yp~ifiicw~fa~INRI~~~~ 227 (303)
T PF05462_consen 157 FA-LFYIPLWIIIIISAILVGITMRYIYRVIRNG-VSDN-KDKH------LKYQLKLVNYPLIFIICWIFATINRIYNFI 227 (303)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-cchh-HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 22223221111 1111111111211111 1111 1111 111123456888999999999999999887
Q ss_pred hCCccccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhc
Q psy16124 252 SGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLC 301 (323)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~ 301 (323)
+..+ ..+...-..++.+...+|.++|++.++-++|-+....
T Consensus 228 ~~~~---------~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~ 268 (303)
T PF05462_consen 228 GKNP---------FWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKI 268 (303)
T ss_pred cCCc---------hHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6432 3455555667778999999999999998888876654
No 16
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.54 E-value=1.5e-13 Score=113.16 Aligned_cols=250 Identities=12% Similarity=0.098 Sum_probs=151.3
Q ss_pred HHHHHhhcc----eEEEEEeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccCcccccccchh------HHhHHH
Q psy16124 21 RQCVDIALD----AQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICR------IVGYIE 90 (323)
Q Consensus 21 ~~~~gl~~N----~v~~~i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~~~~~~~~~C~------~~~~~~ 90 (323)
.++.|++.. .++.++.+++..|.+.+-.+.-|++.|+......-......... |...|. +.+.+.
T Consensus 39 ~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~-----G~vfC~~P~~~~i~G~~~ 113 (313)
T PF10321_consen 39 FLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAIF-----GAVFCSYPRFIYIMGCIA 113 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhc-----CccccCCchHhhhhhccc
Confidence 366777765 55555667777789999999999999999864432222221122 233343 344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCcccccccchhhhHH--HHHHHHHHhhhhcccccCCCcccCCCceEeecc---
Q psy16124 91 VTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMA--FTWISSAMVCCPPLLDFSDPKYDEDGYICMLDW--- 165 (323)
Q Consensus 91 ~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~--- 165 (323)
..+..++......+++||..-+..|.........++....+. .+|.+-..+..++..... +......|.
T Consensus 114 ~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns------~~~sw~fDP~i~ 187 (313)
T PF10321_consen 114 LGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNS------EYMSWFFDPMIF 187 (313)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccCCC------CcceEecCcccc
Confidence 666778888889999999999999887766666666554433 333332232334433211 111111111
Q ss_pred --CCceeehhhhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHHH
Q psy16124 166 --GGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYI 243 (323)
Q Consensus 166 --~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~ 243 (323)
++.+.|.-..-...-+.-.+.+..+|+.+...++++.+....... .+ .+++...+..++.+...+.++-|.
T Consensus 188 ~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~~s~~~--~k-----~~~qI~iQs~iIC~f~~i~a~iyv 260 (313)
T PF10321_consen 188 EGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYSTSSQL--SK-----AQRQIFIQSVIICFFHAIAAVIYV 260 (313)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh--hh-----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223322222223333456888899999888887655522111 11 134455555555555555554443
Q ss_pred HHHHHHHHhCCccccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhc
Q psy16124 244 VVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLC 301 (323)
Q Consensus 244 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~ 301 (323)
....+ ..+ .+...+......+++..+|+||...|+..|++++|.+
T Consensus 261 ~m~f~----~~p---------~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~ 305 (313)
T PF10321_consen 261 YMQFF----PPP---------PWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKML 305 (313)
T ss_pred eeeee----ccc---------HHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHH
Confidence 32221 112 5677888999999999999999999999999999988
No 17
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=99.39 E-value=2.9e-12 Score=102.21 Aligned_cols=244 Identities=15% Similarity=0.116 Sum_probs=158.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHh-hhhhHHhhhccCcccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q psy16124 40 CPGEMINYYILSLAMADLLFGLL-VVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPLRY 118 (323)
Q Consensus 40 ~~r~~~~~~l~~La~~Dll~~l~-~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~p~~~ 118 (323)
+..+|.+..+.+||++|.+..+. ++|.... ....+ .++|..||...|+..++...|+.+.+++++-.-+.|. |...
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~-~~~~~-~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItIS-P~~s 82 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQTMA-FFGWK-FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITIS-PSNS 82 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHH-Hhhcc-cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEe-cCCc
Confidence 44689999999999999998655 5554322 22222 4688999999999999999999999999998777764 3321
Q ss_pred c----ccccccchhhhHHHHHHHHHHhhhhccccc-CCCcc-----cCCCceEeeccCCcee---ehhhhhHHhhhHHHH
Q psy16124 119 E----TVQTKTRCQCWMAFTWISSAMVCCPPLLDF-SDPKY-----DEDGYICMLDWGGMAA---YTITLGCLVLGPSLI 185 (323)
Q Consensus 119 ~----~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~-----~~~~~~C~~~~~~~~~---~~~~~~~~~~~~p~~ 185 (323)
. +...++.....+...|++-+++........ ...+. ..+...|.....+... +......-- ++.+.
T Consensus 83 ~w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~~D-~~fvg 161 (265)
T PF03402_consen 83 RWAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIVSSLFATLLSFRD-VLFVG 161 (265)
T ss_pred hhhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhhhhhhhhHHHhhH-HHHHH
Confidence 1 112334445566788999887765433221 11111 1123568765433322 222222212 33356
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhH
Q psy16124 186 TIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFL 265 (323)
Q Consensus 186 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~ 265 (323)
+|+...+.+...+.||+++.+.-.+ .+...+..-|.|++++++..+..|+..+....+...+.....+. .
T Consensus 162 LM~~aSgyMV~~L~RH~q~VqhIhs-~~~s~r~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~~---------~ 231 (265)
T PF03402_consen 162 LMIWASGYMVFLLYRHHQQVQHIHS-SSLSPRSSPETRATKTILLLVSTFVSFYGLSSILFIYLTSFKNS---------P 231 (265)
T ss_pred HHHhhhhhheeeeeecccccccCcC-CCCCCCCChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcCC---------c
Confidence 6888888888888887665443222 11122222378899999999999999999888775554433322 2
Q ss_pred HHHHHHHHHHHHhchhhhhhhhcCCHHHHHHH
Q psy16124 266 VLHFLVVWLGILNSVWKGIVLILMSPQFRIML 297 (323)
Q Consensus 266 ~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~ 297 (323)
....+..+++...+.+.|++.+..+++..+-+
T Consensus 232 ~~~~~~~~ls~cfptisPfvLI~~d~~i~~~~ 263 (265)
T PF03402_consen 232 WLLNISVFLSSCFPTISPFVLISSDKRIIKFL 263 (265)
T ss_pred ceeEHHHHHhHHhHhhChHHhhccCchHHHHh
Confidence 23346678889999999999999999887754
No 18
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=99.32 E-value=5.6e-10 Score=92.70 Aligned_cols=260 Identities=13% Similarity=0.112 Sum_probs=152.6
Q ss_pred HHHHHHHhhcc--eEEEEEeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccC----------cccccccchhHH
Q psy16124 19 GRRQCVDIALD--AQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQ----------DWVYGNVICRIV 86 (323)
Q Consensus 19 ~~~~~~gl~~N--~v~~~i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~----------~~~~~~~~C~~~ 86 (323)
.....+|++.| ++..++.+.++.-++..+++.|-|+.|++.+........-....+ -...|+..|...
T Consensus 6 ~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~R~i~~~~~~~~~~~GpC~~~~~~~C~~~ 85 (292)
T PF10317_consen 6 PIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQPRIIPNGTSIAVISYGPCRYFGPWFCFFC 85 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEeeecceecCcHHHHHH
Confidence 34578999999 444555556666688899999999999999755433222111111 123466788888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcccC-CCceEe--e
Q psy16124 87 GYIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDE-DGYICM--L 163 (323)
Q Consensus 87 ~~~~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~C~--~ 163 (323)
..+...+...+.+.+..--..||..+.++.. ++++....+...+..++...........+..... ....-. .
T Consensus 86 y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~p~y 160 (292)
T PF10317_consen 86 YHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFFFFSPTDSEPVEAELNQFHPEY 160 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHhCccc
Confidence 8888888889999999999999999987543 4556666667777777776555444332211000 000000 0
Q ss_pred ccCCc--------eeehhhhhHH----hhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHH
Q psy16124 164 DWGGM--------AAYTITLGCL----VLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSL 231 (323)
Q Consensus 164 ~~~~~--------~~~~~~~~~~----~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 231 (323)
+.+++ .......... ...+..+++.++--++.+.++++..+.+++.++ ..++..+.+..-
T Consensus 161 ~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~R~ki~~~L~~~~~~~S~~tk~--------~h~~lv~~Lt~Q 232 (292)
T PF10317_consen 161 NLENYSISGFSDISSPPSLINILIMTIPIFPIPIVIFFLRRKILKFLNKKSSSMSERTKS--------MHRQLVKGLTIQ 232 (292)
T ss_pred ccccceeeeecchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHH--------HHHHHHHHHHHH
Confidence 11100 1110111111 111111122222333333333322222111111 134456666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHH
Q psy16124 232 IMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRL 299 (323)
Q Consensus 232 ~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~ 299 (323)
...=.++..|.....++...+..+ ..........+..+.+.+||++....=+.+||+++|
T Consensus 233 ~~lP~~~~~p~~~~~~~~~~~~~~--------~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 233 ALLPLFFYIPGVIIYFLSQFTGYE--------HPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HHhHHHHHHHHHHHHHHHHHhccc--------cHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 666677778777777777766554 245556667778899999999999999999999875
No 19
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=99.26 E-value=1.6e-10 Score=89.45 Aligned_cols=162 Identities=13% Similarity=0.100 Sum_probs=108.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccCcccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q psy16124 39 QCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPLRY 118 (323)
Q Consensus 39 ~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~p~~~ 118 (323)
+++|+-.+-++.||.++|++.++..+.........++-..++..|..++++..++..++-+...+||++-|+.+.+|...
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~ 109 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWK 109 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 44456666699999999999988776645555544544556789999999999999999999999999999999999221
Q ss_pred cc---------cccccchhhhHHHHHHHHHHhhhhcccccCCCcccCCCceEeeccCCceeehhhhhHHhhhHHHHHHHH
Q psy16124 119 ET---------VQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWGGMAAYTITLGCLVLGPSLITIVY 189 (323)
Q Consensus 119 ~~---------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 189 (323)
++ ...+........+.|++...++ +...+...+.+...+|..+.+....-.....+.-++. ...+++
T Consensus 110 ~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la---~i~~~~~~Y~~~g~WCWi~~~~~~~Rl~l~y~~~~~~-~~~~i~ 185 (201)
T PF11710_consen 110 RKRSKNVEGGLYPYRYWVWVIWILVPLLLASLA---FIGLGGPGYGPAGAWCWIPSRYEWYRLWLHYIWRFII-IFAIII 185 (201)
T ss_pred cccccccccceEEeeeeeehHHHHHHHHHHHHH---HhccccCcccccCcEEEECCCcHHHHHHHHHHHHHHH-HHHHHH
Confidence 11 0111122222234444443333 3333444567778999988766433333344444444 455777
Q ss_pred HHHHHHHHHHHhcCC
Q psy16124 190 TYSYIFSMMRKLKSG 204 (323)
Q Consensus 190 ~~~~i~~~~~~~~~~ 204 (323)
.|..++..+||+.++
T Consensus 186 iY~~if~~lrr~~~~ 200 (201)
T PF11710_consen 186 IYIAIFFYLRRRIRR 200 (201)
T ss_pred HHHHHHHHHhhhhcc
Confidence 899999999887553
No 20
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=99.02 E-value=2.7e-11 Score=101.68 Aligned_cols=262 Identities=15% Similarity=0.224 Sum_probs=152.3
Q ss_pred HHHHHHhhcc-eEEEEE-eecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhh--------c--cCcccccccchhHHh
Q psy16124 20 RRQCVDIALD-AQITPW-YSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPA--------L--AQDWVYGNVICRIVG 87 (323)
Q Consensus 20 ~~~~~gl~~N-~v~~~i-~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~--------~--~~~~~~~~~~C~~~~ 87 (323)
..++++++.| +.++.+ .+.++.-....+++...|+.|++.+++-....-... . .+.+..+....+...
T Consensus 7 ~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (307)
T PF10326_consen 7 IGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQILL 86 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeehh
Confidence 4578899999 444444 444554456667888899999988765332211111 1 112223344555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCc-------------c
Q psy16124 88 YIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPK-------------Y 154 (323)
Q Consensus 88 ~~~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-------------~ 154 (323)
.+...+...+...++.--+.||.++++|.+.+.. +.++........-+.++.+...........+ +
T Consensus 87 ~~y~~~f~~~~~llaihFiYRY~av~~~~~l~~f-~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~lr~~~~~~y 165 (307)
T PF10326_consen 87 AIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLRYF-SGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEESDEYLREELLENY 165 (307)
T ss_pred hhhhhhHHHHHHHHHhHhhhheeeeccchhhccc-cccceeeeehhhhhhcccceEEEeehhccchhhhhhhcccccccc
Confidence 6677777888888899999999999999876443 3333333222222222222222211111100 0
Q ss_pred --cCCCce----Eee--ccCCc------eeehhhhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhcc
Q psy16124 155 --DEDGYI----CML--DWGGM------AAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENL 220 (323)
Q Consensus 155 --~~~~~~----C~~--~~~~~------~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (323)
+.++.. ... +.+.. ...............+.++++|-.++++++++..+...++.++.+++.-+
T Consensus 166 ~~~i~~~~y~~~~~y~~~~nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~S~~~~~lq~QLf~-- 243 (307)
T PF10326_consen 166 GLDIDEIPYVGFVYYPKDENGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIMSSKTRKLQKQLFK-- 243 (307)
T ss_pred CCCccceeEEEEEEeeeccCCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhccccccChhhHHHHHHHHH--
Confidence 001100 001 11111 11222333345566788899999999998865544333233323332222
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHH
Q psy16124 221 SNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLR 298 (323)
Q Consensus 221 ~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~ 298 (323)
..++...+..++...|..+......++.+. .....+......+.+++||++-.+.-+++|++++
T Consensus 244 -----aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~~---------~~~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~ 307 (307)
T PF10326_consen 244 -----ALVIQTIIPFIFMYIPVFIVFILPFFGIDL---------GFFSNIISILISLYPAIDPLPVIFIIKDYRKAIK 307 (307)
T ss_pred -----HHHHHhhhhheeeecchhheeeeeccCCCC---------CccccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence 445566778888899999887776666444 2334456678889999999999999999999874
No 21
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=99.02 E-value=3.6e-09 Score=87.46 Aligned_cols=256 Identities=12% Similarity=0.092 Sum_probs=135.2
Q ss_pred HHHHHhhcc-eEEEEEeecCC---cchhHHHHHHHHHHHHHHHHHhhhhh-HHhhhccCc-------ccccccchhHHhH
Q psy16124 21 RQCVDIALD-AQITPWYSAQC---PGEMINYYILSLAMADLLFGLLVVPL-SVYPALAQD-------WVYGNVICRIVGY 88 (323)
Q Consensus 21 ~~~~gl~~N-~v~~~i~~~~~---~r~~~~~~l~~La~~Dll~~l~~~~~-~~~~~~~~~-------~~~~~~~C~~~~~ 88 (323)
..+.+++.+ .++.++.++++ .+++.+.+...-++.|++.-+...+. .+.....+. ....+...+...+
T Consensus 7 Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (275)
T PF02118_consen 7 YGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFYF 86 (275)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHHH
Confidence 345566667 55555555555 37788877777777787774433332 121110010 1122355667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcccCCCceEeeccCCc
Q psy16124 89 IEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWGGM 168 (323)
Q Consensus 89 ~~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 168 (323)
+.+.+..+.......+++||+-++..|.++++..++.. ..+++++.++++....+.........+++++..-.......
T Consensus 87 l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~-~~~i~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (275)
T PF02118_consen 87 LQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYY-WIIIIIIFLLPFSFTWNIFISPTYVVYDNGGFSYSYNDTVS 165 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhh-hhheeeeeehhHHHHHHHHccccEEEEECCceEEEEEeccc
Confidence 88888889999999999999999999999988776444 33444555555554444444333333333332222222222
Q ss_pred eeehhhhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q psy16124 169 AAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLY 248 (323)
Q Consensus 169 ~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~ 248 (323)
............++..++.+.++....+++++.+++.+ + .|++..+........+.+.-....+...
T Consensus 166 ~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~~~~~-------~-----~er~L~~is~~~~~~~~~~~~~~~~~~~- 232 (275)
T PF02118_consen 166 WASLSIFSLIYFIIIIIITIITNIITYRRLRKLSKRIK-------S-----VERNLTIISFIISFVQLLIAIWQIINSF- 232 (275)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 11222223333344445555666666666665441111 1 1233444444444444443333332111
Q ss_pred HHHhCCccccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHH
Q psy16124 249 EYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIM 296 (323)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~ 296 (323)
....+.. + .............=.-+...|++-...|++.||+
T Consensus 233 ~~~~~~~----~--~~~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~ 274 (275)
T PF02118_consen 233 AFFFDFL----P--ISSFLYYLLPFASDLLTLSQPYILLIFSKNVRRQ 274 (275)
T ss_pred HHhhccc----c--HHHHHHHHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence 1111111 1 1122333333333344667799999999999986
No 22
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=98.98 E-value=1.8e-07 Score=78.92 Aligned_cols=269 Identities=13% Similarity=0.083 Sum_probs=149.5
Q ss_pred HHHHhhcc-eEEEEEeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHH---hhhcc--C--cccccccchhHHhHHHHHH
Q psy16124 22 QCVDIALD-AQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSV---YPALA--Q--DWVYGNVICRIVGYIEVTL 93 (323)
Q Consensus 22 ~~~gl~~N-~v~~~i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~---~~~~~--~--~~~~~~~~C~~~~~~~~~~ 93 (323)
.++|++.+ ..+.....++..+....+++...+++.++.++.-+.... +.... + +...+...|-.......++
T Consensus 27 s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~lR~~~~~~ 106 (324)
T PF10292_consen 27 SIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFILRIPYNFG 106 (324)
T ss_pred HHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHHHHHHHHHH
Confidence 56666666 555556666667888889999999999988755333322 22211 1 2334567898889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcc-cCCCceEeeccCCceeeh
Q psy16124 94 WVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKY-DEDGYICMLDWGGMAAYT 172 (323)
Q Consensus 94 ~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~C~~~~~~~~~~~ 172 (323)
...+..+..++.+||++|..+..+|.+. ++.-......+.|++++...... ...... +.....|....+......
T Consensus 107 ~~~~~~t~v~l~IER~iAT~~~~~YE~~-~~~~Gi~l~~~qi~is~~~~~~~---~~~~~~~~~~~~yC~~~~~~~~~~~ 182 (324)
T PF10292_consen 107 LFLVSFTTVSLVIERTIATFFSKSYEKS-GKWLGILLAFFQILISLLILYFV---YSDEDFPNERMYYCQASSSSSPYRV 182 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhcCC-CccHHHHHHHHHHHHHHHHHHHH---HhhhhccCccceeeEEecCCCchhh
Confidence 9999999999999999999999888754 22222233344455554433222 122222 333456877554422222
Q ss_pred hhhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16124 173 ITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLS 252 (323)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~ 252 (323)
........+.-++ ..+.+..+++.=+|.+++.....- .++-+.++..|..+++..++....+.-+.+.+..+.....
T Consensus 183 ~~~~~~~~~~~i~-~~i~f~~L~~~Nkk~r~~~~~~~L--S~RYQl~ENl~slr~L~p~~~~~~i~~~~~~~~~~~~~~~ 259 (324)
T PF10292_consen 183 NIPFIVILVLQIL-ALILFRYLLRKNKKLRKQQKHSTL--SERYQLEENLRSLRLLKPFIILSSIFIFFYIFASIFLRLF 259 (324)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCCCc--chHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222222222 222233333333332221222222 2222222245667777666666666555555554444433
Q ss_pred CCccccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhc
Q psy16124 253 GHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLC 301 (323)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~ 301 (323)
....+ ......... .......++.+-|++.....++.|++.++-.
T Consensus 260 ~~~~~---~~~y~al~e-~~~~~P~Y~ii~~~~~~~~~k~~r~~~~~~l 304 (324)
T PF10292_consen 260 NPSMS---KPNYFALAE-LNHIFPLYSIISPLILYRKIKKIRKKRKKRL 304 (324)
T ss_pred cccCC---hhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 111122222 2335667889999999999999998887654
No 23
>KOG4193|consensus
Probab=98.91 E-value=1e-07 Score=85.35 Aligned_cols=246 Identities=15% Similarity=0.170 Sum_probs=142.7
Q ss_pred HHHHhhcc-eEEEEEeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccCccccc-cc-chhHHhHHHHHHHHHHH
Q psy16124 22 QCVDIALD-AQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYG-NV-ICRIVGYIEVTLWVICN 98 (323)
Q Consensus 22 ~~~gl~~N-~v~~~i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~~~~~~-~~-~C~~~~~~~~~~~~~s~ 98 (323)
+.+++++- +.+++..--|++++..+....||+++=++.-++. +.+.|..+ .. .|+..+++..++..++.
T Consensus 330 ~~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~l~f--------L~~~~~~~~~~~~C~~~a~llhff~LaaF 401 (610)
T KOG4193|consen 330 CIISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLAELLF--------LLGIDRTSTSVVLCIAAAILLHFFFLAAF 401 (610)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH--------hcccccccCcccccHHHHHHHHHHHHHHH
Confidence 44444444 4444444455555544777778887732221111 11222222 22 79999999999999999
Q ss_pred HHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCc-ccCCCceEeeccCCceeehhhhhH
Q psy16124 99 YTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPK-YDEDGYICMLDWGGMAAYTITLGC 177 (323)
Q Consensus 99 ~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~C~~~~~~~~~~~~~~~~ 177 (323)
.-+..++.+-|..++.-++. ...++........|..++++...........+ .......|..+.+....+.
T Consensus 402 ~Wm~leg~hl~~~~v~vf~~---~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~~~~~~~~----- 473 (610)
T KOG4193|consen 402 FWMLLEGFHLYLLLVEVFRS---RPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDTQNGFIWS----- 473 (610)
T ss_pred HHHHHHHHHHHHHHHHHhcc---ccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCceEEecCCceEEE-----
Confidence 99999999999977654432 23444444446899988887665544332221 1222334988877665554
Q ss_pred HhhhHHHHHHHHHHHHHHHHH-HHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q psy16124 178 LVLGPSLITIVYTYSYIFSMM-RKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHII 256 (323)
Q Consensus 178 ~~~~~p~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~ 256 (323)
++-|+.+++.+++.++... ++..++....+...++... .+..+..+.+..+.-++|.--. .....+.
T Consensus 474 --F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~~~~~~~----~~~~~~~l~L~~lLGlTW~fgi----~s~~~~~-- 541 (610)
T KOG4193|consen 474 --FLGPVTLIILVNIVMFVVTLKKLLRRLSKLQPIASKLEN----ISLIRSALALLFLLGLTWIFGI----FSWLPGT-- 541 (610)
T ss_pred --EehHHHHHHHHHHHHHHHHHHHHhhcccccCcchhhHHH----HHHHHHHHHHHHHHHHHHHHHH----HHHhccc--
Confidence 4456666666665443322 2222222111111111111 1345666777777777775432 2222211
Q ss_pred ccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhcc
Q psy16124 257 SFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLCI 302 (323)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~ 302 (323)
...+.++..++-.++..+=.+.|.+++++.|++.++.++
T Consensus 542 -------~~v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~ 580 (610)
T KOG4193|consen 542 -------SVVFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLC 580 (610)
T ss_pred -------chHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhc
Confidence 155666677777777888889999999999999999883
No 24
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=98.90 E-value=1.5e-07 Score=77.37 Aligned_cols=225 Identities=16% Similarity=0.191 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhccCcc-----------cccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy16124 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDW-----------VYGNVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRK 114 (323)
Q Consensus 46 ~~~l~~La~~Dll~~l~~~~~~~~~~~~~~~-----------~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~ 114 (323)
.-.+..|++||++.++-.+.-...+.-.++. ......|........+++.++.+-..+.|+|-|+.+.+
T Consensus 68 ~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~ 147 (405)
T PF02101_consen 68 RRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRR 147 (405)
T ss_pred chhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeec
Confidence 4588899999999976555444443322211 11236899888888889999999999999999998854
Q ss_pred cCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcccCCCceEeeccCCceeehhhhhHHhhhHHHHHHH----HH
Q psy16124 115 PLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWGGMAAYTITLGCLVLGPSLITIV----YT 190 (323)
Q Consensus 115 p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~ 190 (323)
.-. .......=..+|..+.+++.--..... .++...|......- +...+..+++ +++.. +.
T Consensus 148 ~ag------~~~~~lYH~~aWgl~~lL~~~Gl~~Ly----~Ps~~~Ce~~l~~a----lphYvttY~P-lllVlvaNPiL 212 (405)
T PF02101_consen 148 SAG------RSTIWLYHMMAWGLPALLCAEGLAMLY----YPSISRCESGLEHA----LPHYVTTYIP-LLLVLVANPIL 212 (405)
T ss_pred cCC------CcchhHHHHHHHHHHHHHHHhccceee----cCCHHhhhhhhhhc----chhHHHHHHH-HHHHHHhccHH
Confidence 211 111223346789988887755443322 22333465332221 1222222332 22222 23
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCcccc------ccchhh
Q psy16124 191 YSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISF------IPQLHF 264 (323)
Q Consensus 191 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~------~~~~~~ 264 (323)
|.+..+++...-+.+...-.++.|+. .+..-+..+.+.++|.+||+|..+--++........+. ..+...
T Consensus 213 y~~a~~~V~~~lk~r~g~yT~~ER~l----~~~IK~kFf~I~lVF~iCWlpNIINg~LL~~l~~~~~i~~~sl~~~~~a~ 288 (405)
T PF02101_consen 213 YIKAVRAVASLLKGRQGIYTENERRL----GAQIKIKFFKIMLVFYICWLPNIINGSLLFYLEMQPDINGGSLKQVRNAA 288 (405)
T ss_pred HHHHHHHHHHHHhhccccccHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHhhcccccccccccchhhHH
Confidence 44444444433332221111111111 12233456778999999999998877755433222110 011223
Q ss_pred HHHHHHHHHHHHHhchhhhhhh-hcC
Q psy16124 265 LVLHFLVVWLGILNSVWKGIVL-ILM 289 (323)
Q Consensus 265 ~~~~~~~~~l~~~~~~~nP~iY-~~~ 289 (323)
.....+..++--++.++|-++| .+.
T Consensus 289 ~t~W~IMaIlNPlQgfLnsLay~gWt 314 (405)
T PF02101_consen 289 LTTWFIMAILNPLQGFLNSLAYYGWT 314 (405)
T ss_pred HHHHHHHHHHhHHHHHHHHHhhccCC
Confidence 3455566666666778888886 443
No 25
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=98.90 E-value=3.5e-07 Score=76.10 Aligned_cols=261 Identities=13% Similarity=0.123 Sum_probs=147.8
Q ss_pred HHHHHHHHhhcc--eEEEEEeecCCcchhHHHHH---HHHHHHHHHHHHhhhhhHHhhhccCccccc------ccchhHH
Q psy16124 18 MGRRQCVDIALD--AQITPWYSAQCPGEMINYYI---LSLAMADLLFGLLVVPLSVYPALAQDWVYG------NVICRIV 86 (323)
Q Consensus 18 ~~~~~~~gl~~N--~v~~~i~~~~~~r~~~~~~l---~~La~~Dll~~l~~~~~~~~~~~~~~~~~~------~~~C~~~ 86 (323)
.-.+.+++++.| .+-+++.+.+++.+-.++++ +...++|+-.+.+.-|..+.+...+. ..| +..++..
T Consensus 15 ~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy-~~G~l~~~f~i~~h~~ 93 (303)
T PF10327_consen 15 YHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGY-CVGFLARYFGISSHYL 93 (303)
T ss_pred HHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEE-EEeehhhcCCCchHHH
Confidence 344577788899 44444555666665444333 35678999999888898888865542 111 1333334
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcc-----cCCCceE
Q psy16124 87 GYIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKY-----DEDGYIC 161 (323)
Q Consensus 87 ~~~~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-----~~~~~~C 161 (323)
..+..+......-.++.--+-|..+|.+..+.... ++...........+................+. +++...|
T Consensus 94 ~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~l-~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~yI~~nyP~~ 172 (303)
T PF10327_consen 94 MTIWIFLFIFQIESLVICFLRKHQAIARILSKHVL-PKWFYIFFYFFCILFPFFIFICFYFSGMSREEQMEYIRENYPEY 172 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcC-cHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCch
Confidence 44444444555555666677899999988765442 33333333333444444433322211111000 0011112
Q ss_pred eecc---CCceee--------hhhhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHH
Q psy16124 162 MLDW---GGMAAY--------TITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFS 230 (323)
Q Consensus 162 ~~~~---~~~~~~--------~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (323)
.... ++-..| .................+++..+++.+++.+++.+++.-++ .|++.+.+.+
T Consensus 173 ~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS~~ty~k--------Hk~av~SLi~ 244 (303)
T PF10327_consen 173 LSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKISKQTYQK--------HKEAVRSLIA 244 (303)
T ss_pred hHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH--------HHHHHHHHHH
Confidence 1111 111111 11222223344455667778888888887766544322211 3446666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHH
Q psy16124 231 LIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIM 296 (323)
Q Consensus 231 i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~ 296 (323)
-..+-.+|-+|..+.........+. ..............+|.+|-++..+.+++|||-
T Consensus 245 Q~~~~~i~~~P~~~~~~~~~~~~~~--------~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 245 QFATSSICILPPFIFVVVVIFEFED--------AQVISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred HHHHHHHHHHHHHHhhhhheecCCC--------cHHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 6667777779998876655554433 255667777888999999999999999999984
No 26
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=98.83 E-value=1.5e-06 Score=72.88 Aligned_cols=271 Identities=17% Similarity=0.220 Sum_probs=146.7
Q ss_pred hhhHHHHHHHHHhhcc-eEEEE-EeecCCcchhHHHHHHH----HHHHHHHHHHhhhhhHHhhhccCc----ccccccch
Q psy16124 14 NLLSMGRRQCVDIALD-AQITP-WYSAQCPGEMINYYILS----LAMADLLFGLLVVPLSVYPALAQD----WVYGNVIC 83 (323)
Q Consensus 14 ~~~~~~~~~~~gl~~N-~v~~~-i~~~~~~r~~~~~~l~~----La~~Dll~~l~~~~~~~~~~~~~~----~~~~~~~C 83 (323)
-....-...+++++.| +..++ +.+.++..+.....+.+ ..+.|+..+.+..|....+...+. ...-+...
T Consensus 6 ~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~ 85 (302)
T PF10318_consen 6 YSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPT 85 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccCh
Confidence 3445555678888888 44443 34444444444444444 346777777777776665543321 11112446
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCccc----CCCc
Q psy16124 84 RIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYD----EDGY 159 (323)
Q Consensus 84 ~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~----~~~~ 159 (323)
.++.++..........++..+--+||.++..+.+ +.. .++.-.......++.+.....|......+.+.. .+..
T Consensus 86 ~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~-~~~-~~~~r~~~~~~~y~~~~~~~~~~~~~~pdQ~~~k~~~~~~~ 163 (302)
T PF10318_consen 86 PIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS-RSL-WKKIRIIFIIFNYIIAFLFFIPIYLSIPDQEEAKQEVLKKY 163 (302)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc-ccc-chhhHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhc
Confidence 6777777778888888888999999999997654 111 112222334555666666666655533321100 0112
Q ss_pred eEeecc--C--C------ceeehhhhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcch-hh
Q psy16124 160 ICMLDW--G--G------MAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHN-MS 228 (323)
Q Consensus 160 ~C~~~~--~--~------~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 228 (323)
.|..+. + . +..+.........+.....+++....+...++++.+.. .+++ .++ .++|..+ +.
T Consensus 164 pc~~~~~~~~~~~fv~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~--~S~~-T~k----~Qkkfl~~l~ 236 (302)
T PF10318_consen 164 PCPPPEFFDNPPVFVLSTDSWYILIIIIIFLLIIFIQIIFFAFLIIYYLLKSQKKT--MSKK-TRK----MQKKFLIALI 236 (302)
T ss_pred cCCchhhcCCCCeEEEcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh--hCHH-HHH----HHHHHHHHHH
Confidence 232210 1 0 11122222222222223333333344444454443311 1111 111 1233443 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhcc
Q psy16124 229 FSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLCI 302 (323)
Q Consensus 229 ~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~ 302 (323)
..+.+.+++.-.|..........+... ....++...+...++...-++..+.++.+|+.++++++
T Consensus 237 iQ~~ip~~~l~~P~~~~~~~~~~~~~~---------q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~ 301 (302)
T PF10318_consen 237 IQVLIPFIFLFIPLIYFIISIIFGYYN---------QALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFR 301 (302)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccc---------cccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhc
Confidence 445556666677887766555444333 44556777888999999999999999999999999983
No 27
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=98.76 E-value=3.9e-06 Score=68.25 Aligned_cols=260 Identities=12% Similarity=0.081 Sum_probs=134.2
Q ss_pred HHHHHhhcc-eEEEEEeecCCcc-hhHHHHHHHHHHHHHHHHHhhh--hhHHhh-------hccCcccccc-cchhHHhH
Q psy16124 21 RQCVDIALD-AQITPWYSAQCPG-EMINYYILSLAMADLLFGLLVV--PLSVYP-------ALAQDWVYGN-VICRIVGY 88 (323)
Q Consensus 21 ~~~~gl~~N-~v~~~i~~~~~~r-~~~~~~l~~La~~Dll~~l~~~--~~~~~~-------~~~~~~~~~~-~~C~~~~~ 88 (323)
..+++.+.| +.++++..+|+.+ ....++++.-|+-|++.++.-+ |..+.. ...++|-.+. ..-+....
T Consensus 14 ~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l~~~~ls 93 (310)
T PF10319_consen 14 FGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSELGQHLLS 93 (310)
T ss_pred HHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchHHHHHHH
Confidence 477889999 7788888877765 5777889999999999987643 332221 1223322221 11122223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhc-ccccCC--------------Cc
Q psy16124 89 IEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPP-LLDFSD--------------PK 153 (323)
Q Consensus 89 ~~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~--------------~~ 153 (323)
....+...|--.+..--+.||+++++|..-++...+......+...-.....+.... .....+ ++
T Consensus 94 ~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~gl~~s~~~~~~h~~~W~~ic~~~~~ad~EiR~YIre~F~e~YG 173 (310)
T PF10319_consen 94 IRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPYGLIGSILYCLFHFASWHVICYFCMYADDEIRDYIRESFREVYG 173 (310)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhC
Confidence 333334445556677889999999998765554433333222221111111111111 111111 11
Q ss_pred ccCCC---ceEeeccCC-ceeehhhhhHH-hhhHH---HHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcc
Q psy16124 154 YDEDG---YICMLDWGG-MAAYTITLGCL-VLGPS---LITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSH 225 (323)
Q Consensus 154 ~~~~~---~~C~~~~~~-~~~~~~~~~~~-~~~~p---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (323)
.+..+ ..+.++... +..+.-..++. ..++. ..+..+.-.+|.+++++.....+++.++. +++..
T Consensus 174 ~Ds~diNml~alY~eaS~~~v~rSW~gi~~~T~iS~~Si~~y~vlg~~I~~kL~~~~~~mS~~T~~l--------q~qL~ 245 (310)
T PF10319_consen 174 VDSMDINMLIALYNEASDETVFRSWIGIIILTIISSYSIILYFVLGYKIMKKLNKMSSTMSKKTKRL--------QRQLF 245 (310)
T ss_pred CCCCcCceEeeeeccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCHhHHHH--------HHHHH
Confidence 11111 112222211 11121111221 11121 12222222233333332222222111111 23344
Q ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHH
Q psy16124 226 NMS-FSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIM 296 (323)
Q Consensus 226 ~~~-~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~ 296 (323)
|.+ ...+..-+++..|-.+......++.+. ..+...........-+++||+.-.++-|.||++
T Consensus 246 ~AL~vQT~IPi~vsf~Pc~~~wy~pif~i~~--------~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r 309 (310)
T PF10319_consen 246 KALIVQTVIPICVSFSPCVLSWYGPIFGIDL--------GRWNNYFSVIALSAFPFLDPLAIILCLPAFRNR 309 (310)
T ss_pred HHHHHHHHhHHHHhhccHHHHHhHHHHcCCh--------hHHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence 443 345556788999998887766666443 267777888888899999999999999999986
No 28
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=98.65 E-value=2.2e-06 Score=67.43 Aligned_cols=248 Identities=13% Similarity=0.166 Sum_probs=149.1
Q ss_pred eEEEEEeecCCcchhHHHHHHHHHHHHHHHHHhh----hhhHHhhhccCcccccccchhHHhHHHHHHHHHHHHHHHHHH
Q psy16124 30 AQITPWYSAQCPGEMINYYILSLAMADLLFGLLV----VPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105 (323)
Q Consensus 30 ~v~~~i~~~~~~r~~~~~~l~~La~~Dll~~l~~----~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia 105 (323)
+++.++..++-.+-+...|+..|.++-.+.+.+. .|-.+......+... +..-.+..+...++.++-.+.=..+|
T Consensus 34 lv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~~-s~~f~~~Sy~idf~h~siLfsNlvia 112 (305)
T PF04789_consen 34 LVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFVQ-SELFIFMSYLIDFCHYSILFSNLVIA 112 (305)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHhc-cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445678899999999988887654 344443333333322 23445667778888888888999999
Q ss_pred HHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcccCCC----ceEeec-----cCCceeehhhhh
Q psy16124 106 VDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDG----YICMLD-----WGGMAAYTITLG 176 (323)
Q Consensus 106 idRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~----~~C~~~-----~~~~~~~~~~~~ 176 (323)
++|.........-.+...+.-..+.+..+|++++..-.........++++... ..|... .+..........
T Consensus 113 IqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~C~~~~~~v~~~~P~~IqiiE~ 192 (305)
T PF04789_consen 113 IQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLNCETCNSVVDISPPRGIQIIEI 192 (305)
T ss_pred HhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEEcCCCCeeEeeCCCCchhHHHH
Confidence 99988776433333444556667778899999988766554444444444322 235433 233344555777
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q psy16124 177 CLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHII 256 (323)
Q Consensus 177 ~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~ 256 (323)
++.+++|+. +.+.|+.+..++-..++.....+ |.+..|.. +.+|++...+..+..+-....-..
T Consensus 193 ilQ~~IPi~-Il~iYiAIIiKI~~MKkssLnK~-----------Ei~ILKQA---ifIFvlFQ~ss~VFl~~qt~~~~~- 256 (305)
T PF04789_consen 193 ILQFGIPIF-ILVIYIAIIIKIIKMKKSSLNKN-----------EITILKQA---IFIFVLFQASSCVFLLCQTFKFNV- 256 (305)
T ss_pred HHHHhHHHH-HHHHHHHHHHHHHHHhhccCCch-----------hHHHHHHH---HHHHHHHHHHHHHHHhheeeeecc-
Confidence 888999976 66678888776665543332111 23333433 444444455553332211111111
Q ss_pred ccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHH
Q psy16124 257 SFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRL 299 (323)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~ 299 (323)
........+...+-....+.-|....+.++|.||-+-.
T Consensus 257 -----~tAFlIKR~iNT~ei~agaatP~ffffTs~eirk~~s~ 294 (305)
T PF04789_consen 257 -----ATAFLIKRIINTMEIFAGAATPCFFFFTSKEIRKLVSS 294 (305)
T ss_pred -----hHHHHHHHHHHHHHHHhhccCCeEEEEehHHHHHHHHh
Confidence 11233445555667777889999999999999998754
No 29
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=98.26 E-value=3.3e-07 Score=74.23 Aligned_cols=136 Identities=13% Similarity=0.106 Sum_probs=0.8
Q ss_pred HHHHhhcc-eEEEEEeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccCcccccccchhHHhHHHHHHHHHHHHH
Q psy16124 22 QCVDIALD-AQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYT 100 (323)
Q Consensus 22 ~~~gl~~N-~v~~~i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~ 100 (323)
..+++++- +.+......|++|+..+....||++++++..+..+.... ....+..+.++..|...+.+...+..++..-
T Consensus 11 ~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~-~~~~~~~~~~~~~C~~~a~~~hy~~la~f~W 89 (242)
T PF00002_consen 11 CSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGIS-QTFSPISTTNHCLCRAIAILLHYFFLASFFW 89 (242)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehh-hccccccccccccchhhhhHhHHHHHHHHHH
Confidence 34444444 444444445777877788889999999988655443211 1111111112235999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcccCCCceEeecc
Q psy16124 101 FMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDW 165 (323)
Q Consensus 101 l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 165 (323)
+.+.++|-|..+..+... .+++.+......|.++++......... .. ..+...|..+.
T Consensus 90 m~~~~~~l~~~~~~~~~~----~~~~~~~~~~~gwg~P~~iv~i~~~~~-~~--~y~~~~CWl~~ 147 (242)
T PF00002_consen 90 MLVEAFYLYRLLVKVFNS----SRRRFWWYYLIGWGIPALIVVISVAVN-SD--GYGNDNCWLSN 147 (242)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHhheeEEEeecc----cchhhheeeeeeecCcceeeeeeeeec-cc--ccccccccccC
Confidence 999999999999877332 234445566788999888776654433 11 22234575554
No 30
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=98.08 E-value=0.00077 Score=56.92 Aligned_cols=224 Identities=10% Similarity=0.030 Sum_probs=111.2
Q ss_pred HHHHhhcc-eEEEEEeecCCcch-hHHHHHHHHHHHHHHHHHhhhhhH---Hhh-hc--cC--cccccccchhHHhHHHH
Q psy16124 22 QCVDIALD-AQITPWYSAQCPGE-MINYYILSLAMADLLFGLLVVPLS---VYP-AL--AQ--DWVYGNVICRIVGYIEV 91 (323)
Q Consensus 22 ~~~gl~~N-~v~~~i~~~~~~r~-~~~~~l~~La~~Dll~~l~~~~~~---~~~-~~--~~--~~~~~~~~C~~~~~~~~ 91 (323)
.++++++. ..+-.+.++.-..+ +...++.+|..+++=-. ...... ++. +. .+ +..+.+..|........
T Consensus 31 ~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~-~y~~~~~~~lyrsf~~~~dpC~i~f~~~eC~~~~~~~~ 109 (328)
T PF02117_consen 31 IIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQI-SYAIIQIWSLYRSFFYSDDPCSILFTSSECFPYYYFYY 109 (328)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCeeeEeecCceeeeehHHH
Confidence 44445555 44444455555554 44555667776665442 222111 111 11 11 24456688999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcccCCCceEeeccCCceee
Q psy16124 92 TLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWGGMAAY 171 (323)
Q Consensus 92 ~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 171 (323)
++.....+...++.+||.+|...|..+++. +......+.+.+-+.++. ......++++ .++-...|....+.....
T Consensus 110 ~~~~~~~~~q~aL~idRl~at~~~~~~~~~-~~~~g~~l~i~~li~s~~--~~~~i~~~~p-~~gyv~~C~~~p~~s~~~ 185 (328)
T PF02117_consen 110 FTNSGMIFIQFALTIDRLLATFFPKYYSKK-SYIIGIILSILVLILSFI--TGFIIYWDDP-LDGYVPSCFYPPKNSVNR 185 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhhhh-hHHHHHHHHHHHHHHHHH--HeeEEEeCCC-CccccccccCCChhHHHH
Confidence 888888999999999999999888655322 111111111222222222 2223333332 233335676644332221
Q ss_pred hhhhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16124 172 TITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYL 251 (323)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~ 251 (323)
..........+.+ .-++....+.+.-+|.+++. .-+- +.+-.+++....++.+..+.+..+++..-|.+...+...
T Consensus 186 ~~~~~~~~~~l~i-~~~i~s~~l~~~nkk~e~~~-~f~v--~~Ry~~~Eni~ST~aI~~i~~~Q~i~~~iys~~v~~l~~ 261 (328)
T PF02117_consen 186 FNIFLIVCFVLTI-FNLIVSIFLMYYNKKKEKKT-RFDV--NSRYQKRENINSTKAICIISISQFICMFIYSFGVFILRN 261 (328)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccc-CCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122222211 12233444444444443322 2222 111122224567788888888888888777665555444
Q ss_pred hCC
Q psy16124 252 SGH 254 (323)
Q Consensus 252 ~~~ 254 (323)
...
T Consensus 262 ~~~ 264 (328)
T PF02117_consen 262 FRS 264 (328)
T ss_pred hhc
Confidence 433
No 31
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=97.94 E-value=0.00064 Score=56.37 Aligned_cols=120 Identities=14% Similarity=0.146 Sum_probs=73.7
Q ss_pred cchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCC-----Cccc
Q psy16124 81 VICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSD-----PKYD 155 (323)
Q Consensus 81 ~~C~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-----~~~~ 155 (323)
..=+...++.+.+.+.+...-++.++-|...+..|.++++. .++-.....-.+.+.+++.+.|.....+. ..+.
T Consensus 101 ~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i-~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf~ 179 (307)
T PF10322_consen 101 HFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKI-CRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPFP 179 (307)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHH-HHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCCC
Confidence 34466777888889999999999999999999999987654 34444555666777777777776654432 1111
Q ss_pred CCCceEeeccCCc-eeehhhhhHHhhhHHHHHHHHHHHHHHHHHHHhc
Q psy16124 156 EDGYICMLDWGGM-AAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLK 202 (323)
Q Consensus 156 ~~~~~C~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~ 202 (323)
.+.-.=..+.+.. ........ .....-.+.+++.++.++.++|+.+
T Consensus 180 fGAI~I~~~~~~~~~~~~~~~l-~~s~~~~~~iii~N~lm~~Klr~~k 226 (307)
T PF10322_consen 180 FGAIIITSTGSWFNIRNSIFHL-FFSIFWMISIIILNILMFFKLRKLK 226 (307)
T ss_pred CCEEEEEEEcccccchhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111111111 11222222 2333334567778999999999876
No 32
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.90 E-value=0.0015 Score=56.15 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhcccccc
Q psy16124 265 LVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLCISVCC 306 (323)
Q Consensus 265 ~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~ 306 (323)
.....+......+++.+=|.+-....++.|+++++.+....+
T Consensus 283 ~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~~~~ 324 (365)
T PF03125_consen 283 TILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPKIRC 324 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhhhhc
Confidence 455567778888999999999999999999999998865444
No 33
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=97.90 E-value=0.00014 Score=59.18 Aligned_cols=106 Identities=14% Similarity=0.163 Sum_probs=66.1
Q ss_pred HHHHhhcc-eEEEEEeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhcc---CcccccccchhHHhHHHHHHHHHH
Q psy16124 22 QCVDIALD-AQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALA---QDWVYGNVICRIVGYIEVTLWVIC 97 (323)
Q Consensus 22 ~~~gl~~N-~v~~~i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~---~~~~~~~~~C~~~~~~~~~~~~~s 97 (323)
..+....| .++..+..+|+.|++.-.+.---.+.|.+.+....+...+.... ++....+..--..+..........
T Consensus 16 s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~p~~~~~~iR 95 (273)
T PF10316_consen 16 SIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIGWPSSNLGSIR 95 (273)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehhhhHHHHHHHH
Confidence 66677788 55566665555445555566677899999987766555443322 111101112222233444455667
Q ss_pred HHHHHHHHHHHHHHHHccCCCcccccccch
Q psy16124 98 NYTFMWMSVDRYLAVRKPLRYETVQTKTRC 127 (323)
Q Consensus 98 ~~~l~~iaidRy~ai~~p~~~~~~~~~~~~ 127 (323)
......||+||.+|+..|..|++..++-..
T Consensus 96 ~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~ 125 (273)
T PF10316_consen 96 SILALIIALDRVFAVYFPIFYHNYRKKIPN 125 (273)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHccCccccH
Confidence 888999999999999999988766444333
No 34
>KOG4564|consensus
Probab=97.82 E-value=0.001 Score=57.85 Aligned_cols=243 Identities=9% Similarity=0.033 Sum_probs=137.8
Q ss_pred EEEEeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccCc------------ccccccchhHHhHHHHHHHHHHHH
Q psy16124 32 ITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQD------------WVYGNVICRIVGYIEVTLWVICNY 99 (323)
Q Consensus 32 ~~~i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~~------------~~~~~~~C~~~~~~~~~~~~~s~~ 99 (323)
+.++..-|++|-..|+.=.||-++=++-++..+..........+ ...+...|+....+...+..++.+
T Consensus 166 l~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ck~~~~~~~Yf~~aNf~ 245 (473)
T KOG4564|consen 166 LIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVGCKLLFVFFQYFVLANFF 245 (473)
T ss_pred HHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 44455667888889999999999988887665554443221211 123557999999888888888877
Q ss_pred HHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcccCCCceEeeccCCceeehhhhhHHh
Q psy16124 100 TFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWGGMAAYTITLGCLV 179 (323)
Q Consensus 100 ~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~ 179 (323)
-+.+=.+.-|-.+.--... .+++......+.|.+++++..+..+.. ...++..|....+....+.++..-
T Consensus 246 WmlvEGlYLhtLlv~~~~s----er~~~~~y~~iGWG~P~v~v~~Wai~r----~~~~d~~CW~~~~~~~~~WIi~gP-- 315 (473)
T KOG4564|consen 246 WMLVEGLYLHTLLVVAFFS----ERRYFWLYLLIGWGVPAVFVVVWAIVR----LYLEDTGCWDSNDTGHIWWIIRGP-- 315 (473)
T ss_pred HHHHHHHHHHHhhheeecc----CccHHHHHHHHhhCCcHHHhhhHHhHh----eeeccccccccCCCcceEEEEecc--
Confidence 7777666666665543322 245556677889999999888776654 222223576654432211111111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccc
Q psy16124 180 LGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFI 259 (323)
Q Consensus 180 ~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~ 259 (323)
..+.+++-.+..+.|.+.+-++-+........+ -+|++|..++++=.|-+..+.+ .+.++.
T Consensus 316 i~~ai~vNf~flinIvrILv~KLr~~~~~~~~~--------y~K~vKaTLvLIPLfGI~~ilf-------~~~P~~---- 376 (473)
T KOG4564|consen 316 ILLAILVNFIFLINIVRILVTKLRASNASETDQ--------YRKLVKATLVLIPLFGIHYILF-------AFRPDE---- 376 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccchHH--------HHHHHHHHHHHHHHcCCeeEEE-------EecCch----
Confidence 111122222233344444333222222222211 1335555555443333332111 111111
Q ss_pred cchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhcccc
Q psy16124 260 PQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLCISV 304 (323)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~ 304 (323)
.........+...+...+..+=.++|++.|+|.|.++||.+.+.
T Consensus 377 -~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~ 420 (473)
T KOG4564|consen 377 -DTLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSRW 420 (473)
T ss_pred -HHHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHhc
Confidence 01124445566677888889999999999999999999988543
No 35
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=97.43 E-value=0.021 Score=47.96 Aligned_cols=87 Identities=14% Similarity=0.181 Sum_probs=62.4
Q ss_pred cccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcccCCC
Q psy16124 79 GNVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDG 158 (323)
Q Consensus 79 ~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 158 (323)
+...|.+...+.+++..++..--+.+++.-|++....-.+... .++....=.+.|.++++..+..+.. +..+-++-.
T Consensus 90 ~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~i--~~~s~yfH~~aW~iP~~~ti~vL~~-~~VdgD~lt 166 (328)
T PF01534_consen 90 ENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEAI--EKKSSYFHLVAWGIPAVLTIAVLAL-RKVDGDELT 166 (328)
T ss_pred CCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcchh--hhhcchhhhHHhhhhHHHHHHHHHh-ccccccccc
Confidence 4589999999999988888877788899999988754433222 3344445688999999988776553 444445556
Q ss_pred ceEeeccCCc
Q psy16124 159 YICMLDWGGM 168 (323)
Q Consensus 159 ~~C~~~~~~~ 168 (323)
+.|.....+.
T Consensus 167 GiC~Vg~~~~ 176 (328)
T PF01534_consen 167 GICFVGNQNP 176 (328)
T ss_pred ceeEEeCCCH
Confidence 7898876554
No 36
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=96.98 E-value=0.018 Score=47.43 Aligned_cols=202 Identities=13% Similarity=0.026 Sum_probs=93.4
Q ss_pred ecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccCcccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHcc
Q psy16124 37 SAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMSVDRYLA-VRKP 115 (323)
Q Consensus 37 ~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~a-i~~p 115 (323)
+-|....++-.++..+.++++...+=.+. +-... .+.| +..|.+...+.......-... ..++-|.++ |..+
T Consensus 18 H~ra~N~~~~~li~Wl~l~nl~~~INaiI-W~~n~-~~~~---~~wCDI~~kl~~~~~~g~~~a--~lcI~r~L~~I~s~ 90 (283)
T PF02076_consen 18 HWRARNIGTCSLIFWLFLSNLIYFINAII-WRDND-INWW---PVWCDISTKLIIGSSVGIPAA--SLCIMRRLYRIASA 90 (283)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHhhhh-cCCCC-CccC---ceeeeehHHHHHHHHHHHHHH--HHHHHHHHHHHhcc
Confidence 33444567778888899888887432221 11111 1122 378999988776666554444 444445444 4343
Q ss_pred CCCccc--ccccchhhhHHHHHHHHHHhhhhcccccCCCcccCCCceEeeccCCceeehhhhhHHhhhHHHHHHHHHHHH
Q psy16124 116 LRYETV--QTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWGGMAAYTITLGCLVLGPSLITIVYTYSY 193 (323)
Q Consensus 116 ~~~~~~--~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 193 (323)
.+.... .++|+...=...++.++++......+..+..-.-.+..-|............+..+.-.+..++..+++-..
T Consensus 91 r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~I~e~~GC~~~~~~s~~~~~l~~iwp~i~~lia~vYa~lt 170 (283)
T PF02076_consen 91 RAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFDIVEDVGCYPAIYPSWPTIFLFIIWPPIFSLIAAVYAILT 170 (283)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEecccCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332211 124444444567777777766555443332111112233654433222222222222222222222222222
Q ss_pred HHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16124 194 IFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEY 250 (323)
Q Consensus 194 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~ 250 (323)
+.+..||+++-++.-+.+ +... +.+|.. .+..+.++.+++.+|..+..++..
T Consensus 171 ~~~f~~rr~~f~~~l~~s-~s~l---~~~Rf~-RL~~la~~~i~~~~P~~i~~~v~n 222 (283)
T PF02076_consen 171 LRRFIRRRKQFRDILSSS-NSGL---NTSRFF-RLLALALVIILIYLPLSIYYLVSN 222 (283)
T ss_pred HHHHHHHHHHHHHHHhcC-CCcc---cHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233322222111100000 0000 012233 367778888999999999888843
No 37
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=96.62 E-value=0.00072 Score=49.27 Aligned_cols=106 Identities=13% Similarity=0.123 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhhccCccccc---ccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccc
Q psy16124 48 YILSLAMADLLFGLLVVPLSVYPALAQDWVYG---NVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTK 124 (323)
Q Consensus 48 ~l~~La~~Dll~~l~~~~~~~~~~~~~~~~~~---~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~ 124 (323)
|+.++++++++..+............++..+. +..-+....+..+++....+..++|++||-.++.+|.+.+.+.|.
T Consensus 6 YI~~M~i~gi~~~~~~~v~~~~~~~~~~~~Y~~yr~~~G~~~TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~ 85 (153)
T PF03383_consen 6 YIYNMIICGIIDKFFIFVDFWIPLFLPDEGYEEYRQFFGKEVTLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSD 85 (153)
T ss_pred EEeHHHHhhHHHHHHHHhhhhhhhccChhHHHHHHHHhCCEEeeeehHHHHHHHHHHHHHHHhheEEEEecCCCcccccc
Confidence 45567777776654422222222212111111 111222344566777788889999999999999999998777899
Q ss_pred cchhhhHHHHHHHHHHhhhhcccccCCCc
Q psy16124 125 TRCQCWMAFTWISSAMVCCPPLLDFSDPK 153 (323)
Q Consensus 125 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 153 (323)
++.+.-+.+..++.+..-+.|.+..-..+
T Consensus 86 ~kl~~YC~~i~i~~~i~LlIPy~S~C~vn 114 (153)
T PF03383_consen 86 KKLWIYCGIIAILSFISLLIPYFSDCYVN 114 (153)
T ss_pred chhHHHHHHHHHHHHHHHHhhcCCCCcEE
Confidence 99998888777777776666665443333
No 38
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=96.03 E-value=0.0097 Score=37.99 Aligned_cols=66 Identities=14% Similarity=0.243 Sum_probs=47.4
Q ss_pred CCcchhhHHHHHHHHHHHH-HHHHHHHHHHHhCCccccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHH
Q psy16124 222 NPSHNMSFSLIMTFWLSWL-PYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQF 293 (323)
Q Consensus 222 ~~~~~~~~~i~~~f~i~~~-P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~f 293 (323)
+|..+.+++=-++|+++|+ |...- ......+.... | ..++..++..+..+|+.+|-++|.+.-+.-
T Consensus 8 ~r~lr~mfiYP~~Yi~lwlfP~~~~-~~~~~~~~~~~--p---~~~l~~i~~~~~~~~G~VD~lvf~~~erpw 74 (76)
T PF11970_consen 8 RRQLRSMFIYPLVYIVLWLFPFAAH-RMQYMYEIGHG--P---SFWLFCIAGFMQPSQGFVDCLVFTLRERPW 74 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCC--C---chHHHHHHHHHHHccCHHHhhheeeecccC
Confidence 4567888999999999999 76544 33333211100 1 267888899999999999999999876543
No 39
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=95.89 E-value=0.45 Score=37.51 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=39.1
Q ss_pred ccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccc
Q psy16124 76 WVYGNVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETV 121 (323)
Q Consensus 76 ~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~ 121 (323)
...+...++.......+....+++.-..+++||++|.....+|.+.
T Consensus 78 LiI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~ 123 (236)
T PF02175_consen 78 LIIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENT 123 (236)
T ss_pred EEEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccC
Confidence 3445677888888888999999999999999999999998888753
No 40
>KOG4289|consensus
Probab=92.64 E-value=2.4 Score=42.38 Aligned_cols=178 Identities=11% Similarity=0.115 Sum_probs=88.3
Q ss_pred cccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcccCCC
Q psy16124 79 GNVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDG 158 (323)
Q Consensus 79 ~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 158 (323)
+...|.+...+..+.+.+....+.+-+++-|.......... .........|.++.++....+. . +
T Consensus 2222 nq~~CtvvailLhf~~~stFaWlfl~gLhlYRml~e~v~tg------~mrfy~~vGwgvPa~itglavg-l-----d--- 2286 (2531)
T KOG4289|consen 2222 NQFYCTVVAILLHFTYLSTFAWLFLEGLHLYRMLTENVDTG------PMRFYYLVGWGVPALITGLAVG-L-----D--- 2286 (2531)
T ss_pred CchhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCC------ceeEEEEeecchhhheeeeeec-c-----c---
Confidence 56789999988888888877777777777777776532222 1122234567776655432211 1 1
Q ss_pred ceEeeccCCceeehhhhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHH
Q psy16124 159 YICMLDWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLS 238 (323)
Q Consensus 159 ~~C~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~ 238 (323)
.+|+........+.+..-+..+++.-..+.....++-. +++...-.+ +...+..+..+++.+..-.+
T Consensus 2287 DfCwlS~h~~LiWsfagPigl~i~ms~~~~~lsa~vSc----~~k~~~f~k---------K~~v~~lq~~fl~llllsat 2353 (2531)
T KOG4289|consen 2287 DFCWLSPHDTLIWSFAGPIGLVILMSFYAAALSARVSC----HKKYQVFVK---------KGNVSVLQHSFLLLLLLSAT 2353 (2531)
T ss_pred ceeecccchheeeeecccceeeehHHHHHHHHHHHHhh----hhhheeeee---------ccchhhhHHHHHHHHHHHHH
Confidence 46876654433333322222222211111111111111 111010000 00122344444444444455
Q ss_pred HHHHHHHHHHHHHhCCccccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHH
Q psy16124 239 WLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLR 298 (323)
Q Consensus 239 ~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~ 298 (323)
|+-... ...... ..++.+...+..+...+--++|+..|.+.|++++
T Consensus 2354 wl~~ll-----~vn~~~---------l~fhyl~a~~~~lqg~~Vlll~cVl~~~~raa~~ 2399 (2531)
T KOG4289|consen 2354 WLLGLL-----AVNPDP---------LEFHYLFASIIGLQGPFVLLLWCVLNIEVRAALK 2399 (2531)
T ss_pred HHHHHH-----hcCCch---------HHHHHHHHHHHHhhhHHHHHHHhhhcHHHHHhhc
Confidence 543321 111111 3455566666667777777888899999999987
No 41
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=85.21 E-value=10 Score=31.07 Aligned_cols=116 Identities=13% Similarity=0.114 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccc-ccccchhhhHHHHHHHHHHhhhhcccccCCCcccCCCceEeeccC
Q psy16124 88 YIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETV-QTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWG 166 (323)
Q Consensus 88 ~~~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 166 (323)
........+--..+..+|++|++--..|..-+.. .+.+.....+........+-.......... ...++. +.. .+
T Consensus 87 ~~l~i~~~v~~lllsLLAIqRFllyFfP~~Ek~v~~~~k~~~~~I~~lY~~~~~k~i~~~~~~~~-~~~~~~--~~~-~~ 162 (267)
T PF10325_consen 87 FILYIITQVFHLLLSLLAIQRFLLYFFPSSEKYVNFSQKNIKKIIWFLYIFFILKDIVFFIWYFI-SFNNES--TEE-IE 162 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hccccc--chh-hh
Confidence 3344444555667889999999999999843222 244444444444444433332222111110 000000 000 01
Q ss_pred CceeehhhhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy16124 167 GMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIH 208 (323)
Q Consensus 167 ~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~ 208 (323)
....+.........++ +.+....|+-|....||.+.-.+.+
T Consensus 163 ~~~~~~~~~~~~~~~l-l~~S~lLYIPI~isirK~~~l~s~~ 203 (267)
T PF10325_consen 163 TFSYIYVIFYIILNIL-LFLSALLYIPIFISIRKLSHLPSAQ 203 (267)
T ss_pred HHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHhhccCccc
Confidence 1111111222223333 3456778999999999887554433
No 42
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=84.47 E-value=7.7 Score=30.07 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=30.6
Q ss_pred ccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q psy16124 78 YGNVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPLRY 118 (323)
Q Consensus 78 ~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~p~~~ 118 (323)
.+-..|.+..-+............+++|+|||+.|++-.|-
T Consensus 112 ytI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~rl 152 (226)
T PF06681_consen 112 YTIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKRL 152 (226)
T ss_pred EEEEeehHHHhHHHHHhhhhccchhhhhhhhhheeeecccC
Confidence 35578988877666666666666778999999999875543
No 43
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=78.23 E-value=40 Score=28.37 Aligned_cols=46 Identities=11% Similarity=0.132 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHH
Q psy16124 190 TYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWL 237 (323)
Q Consensus 190 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i 237 (323)
.-..+.++.||.++.....+..+.++..+ ..|......+.-..|.+
T Consensus 203 li~SL~rH~r~M~~n~~g~~~ps~~aH~~--a~k~~~sfl~ly~~~~~ 248 (303)
T PF05296_consen 203 LIFSLWRHMRRMQKNATGFRDPSTEAHIR--AIKTMISFLILYIIYFL 248 (303)
T ss_pred HHHHHHHHHHHhhCCCCCCCCCCcHHHHH--HHHHHHHHHHHHHHHHH
Confidence 34555666666665443322222222222 23444454544444443
No 44
>PF13853 7tm_4: Olfactory receptor
Probab=69.36 E-value=0.37 Score=35.39 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhhhhcccccCCCcc--cCCCceEee--------ccCCceeehhhhhHHhhhHHHHHHHHHHHHHHHHHH
Q psy16124 130 WMAFTWISSAMVCCPPLLDFSDPKY--DEDGYICML--------DWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMR 199 (323)
Q Consensus 130 ~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~~~C~~--------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~ 199 (323)
...+.|..+++...+.......... ..+...|+. |....+.+.........+.|+.+++++|..|...+.
T Consensus 6 l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~avl 85 (144)
T PF13853_consen 6 LAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILRAVL 85 (144)
T ss_pred hhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEehhh
Confidence 4556777777766655433211111 122333432 112234455555556677889999999999999887
Q ss_pred HhcCCC
Q psy16124 200 KLKSGP 205 (323)
Q Consensus 200 ~~~~~~ 205 (323)
|...++
T Consensus 86 ki~S~~ 91 (144)
T PF13853_consen 86 KIPSAE 91 (144)
T ss_pred cccccc
Confidence 765433
No 45
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=38.98 E-value=41 Score=21.09 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=16.3
Q ss_pred ehhhhhHHhhhHHHH-HHHHHHHHHHHHHHHhc
Q psy16124 171 YTITLGCLVLGPSLI-TIVYTYSYIFSMMRKLK 202 (323)
Q Consensus 171 ~~~~~~~~~~~~p~~-~~~~~~~~i~~~~~~~~ 202 (323)
|.++..++..+.|+. +..++...+.+.+.+..
T Consensus 20 ~~Fl~~vll~LtPlfiisa~lSwkLaK~ie~~e 52 (74)
T PF15086_consen 20 YEFLTTVLLILTPLFIISAVLSWKLAKAIEKEE 52 (74)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444445554555543 44455556666665443
No 46
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=36.80 E-value=2e+02 Score=23.41 Aligned_cols=27 Identities=7% Similarity=-0.060 Sum_probs=15.5
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHH
Q psy16124 222 NPSHNMSFSLIMTFWLSWLPYIVVKLY 248 (323)
Q Consensus 222 ~~~~~~~~~i~~~f~i~~~P~~i~~~~ 248 (323)
++.-+........+.+...+..+....
T Consensus 93 ~~~~r~~~~~~i~~~i~~i~~~~~l~~ 119 (248)
T PF11368_consen 93 RKMNRKLEYATIFFNISIIISFLSLFI 119 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666666666655555
No 47
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=32.81 E-value=94 Score=17.32 Aligned_cols=20 Identities=10% Similarity=0.268 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q psy16124 184 LITIVYTYSYIFSMMRKLKS 203 (323)
Q Consensus 184 ~~~~~~~~~~i~~~~~~~~~ 203 (323)
+.+....-..|++.+++.+.
T Consensus 15 l~If~~iGl~IyQkikqIrg 34 (49)
T PF11044_consen 15 LGIFAWIGLSIYQKIKQIRG 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33344445566777776554
No 48
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=32.12 E-value=47 Score=26.55 Aligned_cols=28 Identities=4% Similarity=0.186 Sum_probs=17.2
Q ss_pred cccchhHHhHHHHHHHHHHHHHHHHHHH
Q psy16124 79 GNVICRIVGYIEVTLWVICNYTFMWMSV 106 (323)
Q Consensus 79 ~~~~C~~~~~~~~~~~~~s~~~l~~iai 106 (323)
++..|.........+.....-.+.+=+.
T Consensus 52 s~~~C~~r~~~~~l~f~l~~~~ll~K~~ 79 (238)
T PF00003_consen 52 SDILCTLRRWLFSLGFTLIFSALLAKTW 79 (238)
T ss_pred CCcEEEEeeeeeeeehHhhhhHHHHhhh
Confidence 4677988877766665555444444444
No 49
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=30.08 E-value=2.3e+02 Score=27.88 Aligned_cols=32 Identities=19% Similarity=0.470 Sum_probs=24.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q psy16124 224 SHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHI 255 (323)
Q Consensus 224 ~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~ 255 (323)
..-.++.+.+.|+++|+-..+..+....+...
T Consensus 459 g~~Lm~gv~~~Flf~~~l~l~~~~~Fl~G~~~ 490 (806)
T PF05478_consen 459 GNFLMAGVGLSFLFSWFLMLLVLFYFLVGGNT 490 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34677888899999998888877776666443
No 50
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=23.15 E-value=26 Score=23.70 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcC
Q psy16124 180 LGPSLITIVYTYSYIFSMMRKLKS 203 (323)
Q Consensus 180 ~~~p~~~~~~~~~~i~~~~~~~~~ 203 (323)
.+++++++.+.|..+.|-.||+.+
T Consensus 12 ll~~vl~~~ifyFli~RPQrKr~K 35 (97)
T COG1862 12 LLPLVLIFAIFYFLIIRPQRKRMK 35 (97)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHH
Confidence 344455667778877766665543
No 51
>PF15069 FAM163: FAM163 family
Probab=21.41 E-value=1.6e+02 Score=21.52 Aligned_cols=24 Identities=17% Similarity=0.001 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhc
Q psy16124 179 VLGPSLITIVYTYSYIFSMMRKLK 202 (323)
Q Consensus 179 ~~~~p~~~~~~~~~~i~~~~~~~~ 202 (323)
.+++..++.++||.++.+..-|+.
T Consensus 15 tVILLcIIaVLCYCRLQYYCCKK~ 38 (143)
T PF15069_consen 15 TVILLCIIAVLCYCRLQYYCCKKN 38 (143)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhcc
Confidence 455557778899999988766654
No 52
>KOG2575|consensus
Probab=21.31 E-value=71 Score=27.95 Aligned_cols=24 Identities=21% Similarity=0.641 Sum_probs=19.6
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHH
Q psy16124 222 NPSHNMSFSLIMTFWLSWLPYIVV 245 (323)
Q Consensus 222 ~~~~~~~~~i~~~f~i~~~P~~i~ 245 (323)
.+..+...+++++|.++|.|+...
T Consensus 255 ~ri~~ia~~Vv~TF~iiw~P~~~~ 278 (510)
T KOG2575|consen 255 ARIIKIALAVVGTFVIIWLPFLLS 278 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346678889999999999998644
No 53
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=20.90 E-value=55 Score=15.00 Aligned_cols=9 Identities=33% Similarity=0.578 Sum_probs=5.5
Q ss_pred CCHHHHHHH
Q psy16124 289 MSPQFRIML 297 (323)
Q Consensus 289 ~~~~fR~~~ 297 (323)
.|.+||+.+
T Consensus 11 SNddFrkmf 19 (21)
T PF05391_consen 11 SNDDFRKMF 19 (21)
T ss_pred chHHHHHHH
Confidence 456677655
No 54
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=20.78 E-value=5e+02 Score=21.66 Aligned_cols=39 Identities=10% Similarity=0.014 Sum_probs=19.4
Q ss_pred HHHHhhcc--eEEEEEeecCCcchhHHHHHHHHHHHHHHHH
Q psy16124 22 QCVDIALD--AQITPWYSAQCPGEMINYYILSLAMADLLFG 60 (323)
Q Consensus 22 ~~~gl~~N--~v~~~i~~~~~~r~~~~~~l~~La~~Dll~~ 60 (323)
.++++.+= ++-......+...++...|..-+.++.+.-+
T Consensus 36 ~~v~~~aliQl~ri~~r~~~~~~t~qkvf~ll~~l~~~~R~ 76 (281)
T PF06454_consen 36 LLVALVALIQLIRIQYRVPKYGWTTQKVFHLLIFLANLVRA 76 (281)
T ss_pred HHHHHHHHHHHhheeEeccccCccHHHHHHHHHHHHHHHHe
Confidence 55555555 3222222223344666666666666665554
No 55
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=20.22 E-value=2.4e+02 Score=17.71 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCC
Q psy16124 179 VLGPSLITIVYTYSYIFSMMRKLKSGP 205 (323)
Q Consensus 179 ~~~~p~~~~~~~~~~i~~~~~~~~~~~ 205 (323)
...+|++.+.-....+...+++..+..
T Consensus 13 l~~l~v~tigPA~~Al~~~~~~~~~~~ 39 (77)
T PF04854_consen 13 LAGLPVFTIGPATAALYYVVRKWVRDE 39 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 445566667777777777787776555
Done!