RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16124
(323 letters)
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 123 bits (310), Expect = 3e-32
Identities = 54/280 (19%), Positives = 103/280 (36%), Gaps = 21/280 (7%)
Query: 46 NYYILSLAMADLLFGLL-VVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWM 104
N +I++LA +D F L+ PL + W++G C++ G+I + T +
Sbjct: 70 NMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMI 129
Query: 105 SVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLD 164
S+DRY + +P+ + R + F W+ S + P+ + + C D
Sbjct: 130 SIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEGVLCNCSFD 189
Query: 165 WGGMA----AYTITLGCLVLGPSLITIVYTYSYIFSMMRK-LKSGPPIHDKEYATALAEN 219
+ + + + L ++ I + Y I + K + + A L +
Sbjct: 190 YISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKA 249
Query: 220 LSNPSH-----NMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHF-LVLHFLVVW 273
+ + +S ++ F LSW PY VV L F P L V
Sbjct: 250 QAGANAEMRLAKISIVIVSQFLLSWSPYAVVALL-------AQFGPLEWVTPYAAQLPVM 302
Query: 274 LGILNSVWKGIVLILMSPQFR--IMLRLLCISVCCKQKSN 311
+++ ++ + P+FR I + CC+
Sbjct: 303 FAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDK 342
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 120 bits (302), Expect = 1e-31
Identities = 47/276 (17%), Positives = 109/276 (39%), Gaps = 19/276 (6%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105
NY++++LA A+ ++ A+ +W YG C+ + + Y+ ++
Sbjct: 68 NYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVA 127
Query: 106 VDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDW 165
DRY+A+ PL+ + T + + W+ + ++ P +S + +CM++W
Sbjct: 128 FDRYMAIIHPLQPRL--SATATKVVICVIWVLALLLAFPQGY-YSTTETMPSRVVCMIEW 184
Query: 166 ----GGMAAYTITLGCLVLG---PSLITIVYTYSYIFSMMRKLK-SGPPIHDKEYATALA 217
+ + VL P L+ I Y Y+ + L S P +
Sbjct: 185 PEHPNKIYEKVYHICVTVLIYFLP-LLVIGYAYTVVG---ITLWASEIPGDSSDRYHEQV 240
Query: 218 ENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGIL 277
M ++ TF + WLP+ + L Y++ + ++ ++WL +
Sbjct: 241 SAKRKVVK-MMIVVVCTFAICWLPFHIFFLLPYIN---PDLYLKKFIQQVYLAIMWLAMS 296
Query: 278 NSVWKGIVLILMSPQFRIMLRLLCISVCCKQKSNWD 313
++++ I+ ++ +FR+ + +++
Sbjct: 297 STMYNPIIYCCLNDRFRLGFKHAFRCCPFISAGDYE 332
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 121 bits (304), Expect = 3e-31
Identities = 58/275 (21%), Positives = 106/275 (38%), Gaps = 22/275 (8%)
Query: 44 MINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYI-EVTLWVICNYTFM 102
N YI +LA+AD L LL +P L W +GN +C+ V I ++ +T
Sbjct: 159 ATNIYIFNLALADTLV-LLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTST-FTLT 216
Query: 103 WMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICM 162
MSVDRY+A+ P+R V+T ++ Q W +++V P + + +++ C+
Sbjct: 217 AMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAI-MGSAQVEDEEIECL 275
Query: 163 LDWGGMAAY---TITLGCLVLG---PSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATAL 216
++ Y + + P ++ I YS M+R+L+ +
Sbjct: 276 VEIPTPQDYWGPVFAICIFLFSFIVP-VLVISVCYS---LMIRRLRGVRLLSGSREKDRN 331
Query: 217 AENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGI 276
++ + ++ F W P V L + L S + + LG
Sbjct: 332 LRRIT----RLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSE----TAVAILRFCTALGY 383
Query: 277 LNSVWKGIVLILMSPQFRIMLRLLCISVCCKQKSN 311
+NS I+ + F+ R C + +
Sbjct: 384 VNSCLNPILYAFLDENFKACFRKFCCASALGRPLE 418
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 116 bits (292), Expect = 4e-30
Identities = 56/279 (20%), Positives = 113/279 (40%), Gaps = 32/279 (11%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105
NY +L+LA+ADL ++Y +L +V+G C + G+ I ++ + ++
Sbjct: 74 NYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLA 133
Query: 106 VDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDW 165
++RY+ V KP+ + +AFTW+ + PPL+ +S + C +D+
Sbjct: 134 IERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDY 192
Query: 166 ------GGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAEN 219
++ I + + LI I + Y + +++ A E+
Sbjct: 193 YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKE-----------AAAQQQES 241
Query: 220 LSNPSHN-----MSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWL 274
+ M +++ F + WLPY V Y + F P + + +
Sbjct: 242 ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFT-HQGSDFGP-----IFMTIPAFF 295
Query: 275 GILNSVWKGIVLILMSPQFRIMLRLLCISVCCKQKSNWD 313
++V+ ++ I+M+ QFR + +CC + D
Sbjct: 296 AKTSAVYNPVIYIMMNKQFRNCMVTT---LCCGKNPLGD 331
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 106 bits (266), Expect = 9e-27
Identities = 55/241 (22%), Positives = 99/241 (41%), Gaps = 16/241 (6%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWV--ICNYTFMW 103
N +I SLA ADL+ GLLVVP + W++G+ +C + ++V I +
Sbjct: 47 NLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVI- 105
Query: 104 MSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICML 163
++DRYLA+ P RY+++ T+ R + + W SA+V P++ D C
Sbjct: 106 -AIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQ 164
Query: 164 DWGG-----MAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAE 218
D G AY I + L+ +++ ++ ++ K + +
Sbjct: 165 DPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVML 224
Query: 219 NLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILN 278
+ + ++ F L WLP+ +V + + ++ L WLG N
Sbjct: 225 MREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVP-------DWLFVAFNWLGYAN 277
Query: 279 S 279
S
Sbjct: 278 S 278
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 108 bits (270), Expect = 2e-26
Identities = 57/263 (21%), Positives = 103/263 (39%), Gaps = 39/263 (14%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWV--ICNYTFMW 103
NY+I SLA ADL+ GL VVP L + W +GN C I+V I +
Sbjct: 218 NYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVI- 276
Query: 104 MSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICML 163
+VDRY A+ P +Y+++ TK + + + WI S + P+ ++ C
Sbjct: 277 -AVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYA 335
Query: 164 DWGG-------MAAYTITLGCLVLGPSLITIVYTYSYIFSMMRK-------LKSGPPIHD 209
+ A ++ + P +I +V+ YS +F ++ + + +
Sbjct: 336 EETCCDFFTNQAYAIASSIVSFYV-PLVI-MVFVYSRVFQEAKRQLQKIDKSEGRFHVQN 393
Query: 210 KEYATALAENLSNPSHNMSFS------------LIMTFWLSWLPYIVVKLYEYLSGHIIS 257
+ F ++ TF L WLP+ +V + + ++I
Sbjct: 394 LSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIR 453
Query: 258 FIPQLHFLVLHFLVVWLGILNSV 280
++ L+ W+G +NS
Sbjct: 454 -------KEVYILLNWIGYVNSG 469
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 104 bits (260), Expect = 3e-25
Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 22/167 (13%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFM--- 102
NY++ SLA ADL+ G+ + L + W G V+C + W+ +Y
Sbjct: 59 NYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDL--------WLALDYVVSNAS 110
Query: 103 -----WMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLL--DFSDPKYD 155
+S DRY V KPL Y +T +A W+ S ++ P +L F
Sbjct: 111 VMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRT 170
Query: 156 EDGYICMLDWGGMAAYTI--TLGCLVLGPSLITIVYTYSYIFSMMRK 200
+ C + + AA T + L P +I + Y +I +
Sbjct: 171 VEDGECYIQFFSNAAVTFGTAIAAFYL-PVII-MTVLYWHISRASKS 215
Score = 31.6 bits (71), Expect = 0.36
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 227 MSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVL 286
++++ F ++W PY V+ L ++ IP + + WL +NS
Sbjct: 389 TILAILLAFIITWAPYNVMVL---INTFCAPCIPN----TVWTIGYWLCYINSTINPACY 441
Query: 287 ILMSPQFRI-MLRLLCISVCCKQKSN 311
L + F+ LL C +
Sbjct: 442 ALCNATFKKTFKHLLM---CHYKNIG 464
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 100 bits (251), Expect = 5e-24
Identities = 46/217 (21%), Positives = 81/217 (37%), Gaps = 30/217 (13%)
Query: 44 MINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMW 103
N YI +LA+AD L +P L W +GN++C+IV I+ +T
Sbjct: 51 ATNIYIFNLALADALA-TSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCT 109
Query: 104 MSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICML 163
MSVDRY+AV P++ +T + WI S+ + P + + KY + C L
Sbjct: 110 MSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMF-MATTKYRQGSIDCTL 168
Query: 164 DWG--------GMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATA 215
+ + ++ P ++ I Y + + +LKS I
Sbjct: 169 TFSHPTWYWENLLKICVFIFAFIM--P-VLIITVCYGLM---ILRLKSVRNIF------- 215
Query: 216 LAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLS 252
+ L + + + Y + + L+
Sbjct: 216 -------EMLRIDEGLRLKIYKNTEGYYTIGIGHLLT 245
Score = 35.4 bits (81), Expect = 0.024
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 227 MSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVL 286
M ++ F + W P + + + L I+ V + LG NS ++
Sbjct: 384 MVLVVVAVFIVCWTPIHIYVIIKAL----ITIPETTFQTVSWHFCIALGYTNSCLNPVLY 439
Query: 287 ILMSPQFRIMLRLLC 301
+ F+ R C
Sbjct: 440 AFLDENFKRCFREFC 454
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 98.7 bits (245), Expect = 3e-23
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 22/171 (12%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICN---YTFM 102
NY+++SLA AD+ G+L +P ++ ++ + C + + L ++ +
Sbjct: 57 NYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVL---TQSSIFSLL 111
Query: 103 WMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLL-----------DFSD 151
+++DRY+A+R PLRY + T TR + +A W+ S + P+L
Sbjct: 112 AIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHS 171
Query: 152 PKYDEDGYICMLDWGGMAAYTITLGCLV--LGPSLITIVYTYSYIFSMMRK 200
E C+ + Y + L P L+ ++ Y IF R+
Sbjct: 172 QGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLL-MLGVYLRIFLAARR 221
Score = 37.8 bits (87), Expect = 0.004
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 231 LIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMS 290
++ F L WLP ++ + + L +L + L NSV +
Sbjct: 400 IVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAI-----VLSHTNSVVNPFIYAYRI 454
Query: 291 PQFRI-MLRLLCISVCCKQKSNWDV 314
+FR +++ V +Q+
Sbjct: 455 REFRQTFRKIIRSHVLRQQEPFKAH 479
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 97.8 bits (243), Expect = 5e-23
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 32/176 (18%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEV--------TLWVIC 97
NY+++SLA AD+ G+L +P ++ ++ + C + + +L I
Sbjct: 67 NYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAI- 123
Query: 98 NYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDED 157
++DRY+A+R PLRY + T TR + +A W+ S + P+L +++ ++
Sbjct: 124 -------AIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKE 176
Query: 158 G-----------YICMLDWGGMAAYTITLGCLV--LGPSLITIVYTYSYIFSMMRK 200
G C+ + Y + L P L+ ++ Y IF R+
Sbjct: 177 GKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLL-MLGVYLRIFLAARR 231
Score = 38.9 bits (90), Expect = 0.002
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 227 MSFSLIM-TFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIV 285
S ++I+ F L WLP ++ + + L +L + L NSV +
Sbjct: 354 KSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAI-----VLSHTNSVVNPFI 408
Query: 286 LILMSPQFRI-MLRLLCISVCCKQKSNWDV 314
+FR +++ V +Q+
Sbjct: 409 YAYRIREFRQTFRKIIRSHVLRQQEPFKAH 438
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 97.5 bits (242), Expect = 7e-23
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFM--- 102
N YI+SL++ADL+ G +V+P+++ L W G +C W+ +Y
Sbjct: 44 NLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLF--------WLSMDYVASTAS 95
Query: 103 -----WMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLL--DFSDPKYD 155
+ +DRY +V++PLRY +TKTR + W S + P L F
Sbjct: 96 IFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIPILGWNHFMQQTSV 155
Query: 156 EDGYICMLDWGGMAAYTI--TLGCLVLGPSLITIVYTYSYIFSMMRK 200
C D+ + + + + L P+L+ +++ Y+ I+ +R+
Sbjct: 156 RREDKCETDFYDVTWFKVMTAIINFYL-PTLL-MLWFYAKIYKAVRQ 200
Score = 30.8 bits (69), Expect = 0.55
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 231 LIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMS 290
++ F L W+PY + + +I+F LH +WLG +NS ++ L +
Sbjct: 378 IMAAFILCWIPYFIFFM-------VIAFCKNCCNEHLHMFTIWLGYINSTLNPLIYPLCN 430
Query: 291 PQFRI-MLRLLCISVCCKQKSNW 312
F+ R+L I + +
Sbjct: 431 ENFKKTFKRILHI--RSGENLYF 451
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 97.5 bits (242), Expect = 9e-23
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 25/170 (14%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFM--- 102
NY+I SLA ADL+ GL VVP L + W +GN C W + +
Sbjct: 76 NYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEF--------WTSIDVLCVTAS 127
Query: 103 -----WMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDED 157
++VDRY A+ P +Y+++ TK + + + WI S + P+ ++
Sbjct: 128 IETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQE 187
Query: 158 GYICMLDWGG-----MAAYTI--TLGCLVLGPSLITIVYTYSYIFSMMRK 200
C + AY I ++ + P +I +V+ YS +F ++
Sbjct: 188 AINCYAEETCCDFFTNQAYAIASSIVSFYV-PLVI-MVFVYSRVFQEAKR 235
Score = 29.7 bits (66), Expect = 1.4
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 231 LIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMS 290
++ TF L WLP+ +V + + ++I ++ L+ W+G +NS + ++ S
Sbjct: 413 IMGTFTLCWLPFFIVNIVHVIQDNLIR-------KEVYILLNWIGYVNSGFNPLIYCR-S 464
Query: 291 PQFRI-MLRLLCISVCCKQK 309
P FRI LLC+ +
Sbjct: 465 PDFRIAFQELLCLRRSSLKA 484
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 93.4 bits (232), Expect = 2e-21
Identities = 40/210 (19%), Positives = 77/210 (36%), Gaps = 28/210 (13%)
Query: 44 MINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMW 103
M + Y L L++ADLLF ++ +P +W +GN +C+ V I + +
Sbjct: 82 MTDKYRLHLSVADLLF-VITLPFWAV-DAVANWYFGNFLCKAVHVIYTVNLYSSVWILAF 139
Query: 104 MSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICML 163
+S+DRYLA+ + + + WI + ++ P + F++ +D YIC
Sbjct: 140 ISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFI-FANVSEADDRYICDR 198
Query: 164 DWG------GMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALA 217
+ I +G ++ I I+ Y I + KL +
Sbjct: 199 FYPNDLWVVVFQFQHIMVGLIL---PGIVILSCYCII---ISKLSHSGSNIFEM------ 246
Query: 218 ENLSNPSHNMSFSLIMTFWLSWLPYIVVKL 247
+ L + + Y + +
Sbjct: 247 -------LRIDEGLRLKIYKDTEGYYTIGI 269
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 92.5 bits (229), Expect = 4e-21
Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 26/167 (15%)
Query: 46 NYYILSLAMADLLFGLLVVPLS-VYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFM-- 102
NY ++SLA+ADLL LV+P W + + C + +V +
Sbjct: 74 NYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDV--------FVTLDVMMCTA 125
Query: 103 ------WMSVDRYLAVRKPLRYETVQTKT---RCQCWMAFTWISSAMVCCPPLLDFSDPK 153
+S+DRY AV P+ Y+ ++ R + W+ + V CP L F+
Sbjct: 126 SIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTT- 184
Query: 154 YDEDGYICMLDWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRK 200
D +C + Y+ ++ L P + V Y+ I+ ++++
Sbjct: 185 --GDPTVCSISNPDFVIYS-SVVSFYL-PFGV-TVLVYARIYVVLKQ 226
Score = 30.9 bits (69), Expect = 0.63
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 231 LIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHF-LVLHFLVVWLGILNSVWKGIVLILM 289
++ F + WLP+ + + + + H L+ WLG +NS ++
Sbjct: 406 VLGAFIVCWLPFFLTHV-------LNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTF 458
Query: 290 SPQFRI-MLRLLCISVCCKQK 309
+ +FR L++L +
Sbjct: 459 NIEFRKAFLKILSCGRPLEVL 479
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 83.4 bits (205), Expect = 5e-18
Identities = 25/155 (16%), Positives = 60/155 (38%), Gaps = 5/155 (3%)
Query: 46 NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105
Y+I +LA++DLL G+ + A + + ++ + ++
Sbjct: 99 YYFIGNLALSDLLAGVAYTANLLLS-GATTYKLTPAQWFLREGSMFVALSASVFSLLAIA 157
Query: 106 VDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDW 165
++RY+ + K + R ++ W+ S ++ P++ ++ + +
Sbjct: 158 IERYITMLKM-KLHNGSNNFRLFLLISACWVISLILGGLPIMGWNCISALSSCSTVLPLY 216
Query: 166 GGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRK 200
+ I V L++IV Y I+S++R
Sbjct: 217 ---HKHYILFCTTVFTLLLLSIVILYCRIYSLVRT 248
Score = 34.5 bits (78), Expect = 0.040
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 231 LIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMS 290
++ F W P ++ L + + F +FL L +LNS I+ L +
Sbjct: 426 VLSVFIACWAPLFILLLLDVGCK---VKTCDILFRAEYFL--VLAVLNSGTNPIIYTLTN 480
Query: 291 PQFRI-MLRLLCISVCCKQKS 310
+ R +R++ + +
Sbjct: 481 KEMRRAFIRIMGRPLEVLFQG 501
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.032
Identities = 52/333 (15%), Positives = 101/333 (30%), Gaps = 94/333 (28%)
Query: 16 LSMGRRQCVDIALD------AQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVY 69
L++ + L+ QI P ++++ N + ++ L LL Y
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-SSNIKLRIHSIQAELRRLLKSK--PY 243
Query: 70 P-AL--------AQDWVYGNVICRIV---GYIEVTLWVICNYTFMWMSVD---------- 107
L A+ W N+ C+I+ + +VT ++ T
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 108 -----RYLAVRKP-LRYETVQT--------KTRCQCWMAFTWISSAMVCCPPL------- 146
+YL R L E + T + +A TW + V C L
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA-TWDNWKHVNCDKLTTIIESS 362
Query: 147 LDFSDPK-----YD------EDGYI-----CMLDWGGMAAYTI-TLGCLVLGPSLI---- 185
L+ +P +D +I ++ W + + + + SL+
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-WFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 186 --TIVYTYSYIFSMMRKLKSGPPIHDK---EYATALA---ENLSNPSHNMSFSLIMTFWL 237
+ + S + KL++ +H Y ++L P + F +
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-----YS- 475
Query: 238 SWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFL 270
+I L ++ + FL FL
Sbjct: 476 ----HIGHHLKNIEHPERMTLFRMV-FLDFRFL 503
Score = 29.8 bits (66), Expect = 1.4
Identities = 43/314 (13%), Positives = 84/314 (26%), Gaps = 107/314 (34%)
Query: 5 NRWPSIDEVNL--LSMGRRQCVDIALDAQITPWYSAQCPGEMINYYI-LSLAMADLLFGL 61
W + VN L+ ++ L+ P E + LS+
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLN-VLE-----------PAEYRKMFDRLSVFPPSAH--- 386
Query: 62 LVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVR--KPLRYE 119
+P + + W +VI V + L L + K
Sbjct: 387 --IPTILLSLI---W--FDVIKSDVMVVVNKL------------HKYSLVEKQPKESTIS 427
Query: 120 --TVQTKTRCQCWMAFTWISSAMV------CCPPLLDFSDPKYDEDGYICMLDWGGMAAY 171
++ + + + + ++V D P D Y
Sbjct: 428 IPSIYLELKVKL-ENEYALHRSIVDHYNIPKTFDSDDLIPPY--LDQYF----------- 473
Query: 172 TITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENL---------SN 222
YS+I LK+ + + +
Sbjct: 474 -------------------YSHI---GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 223 PSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLV---LHFLV-VWLGILN 278
+ N S S++ T +K Y+ +I P+ LV L FL + ++
Sbjct: 512 TAWNASGSILNTL-------QQLKFYK---PYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 279 SVWKGIV-LILMSP 291
S + ++ + LM+
Sbjct: 562 SKYTDLLRIALMAE 575
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 30.1 bits (68), Expect = 0.076
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 105 SVDRYLAVRKPLRYETVQTKTR 126
S+DRY ++ + + Y +T R
Sbjct: 11 SLDRYWSITQAIEYNLKRTPRR 32
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.62
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 198 MRKLKSGPPIHDKEYATALAENLS 221
++KL++ ++ + A ALA +
Sbjct: 22 LKKLQASLKLYADDSAPALAIKAT 45
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 3.1
Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 28/82 (34%)
Query: 26 IALDAQITPWYSAQC------PGEMINYYILSLAMADLLFGLLV----VPLSVYPALAQD 75
I + Q+ Y PGE+ L G + +V A
Sbjct: 241 IGV-IQLA-HYVVTAKLLGFTPGEL----------RSYLKGATGHSQGLVTAVAIAETDS 288
Query: 76 WV--YGNVICRIVGYIEVTLWV 95
W + +V I V ++
Sbjct: 289 WESFFVSV----RKAITVLFFI 306
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.141 0.475
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,267,519
Number of extensions: 311564
Number of successful extensions: 704
Number of sequences better than 10.0: 1
Number of HSP's gapped: 649
Number of HSP's successfully gapped: 35
Length of query: 323
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 229
Effective length of database: 4,077,219
Effective search space: 933683151
Effective search space used: 933683151
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.2 bits)