RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16124
         (323 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 71.9 bits (175), Expect = 8e-15
 Identities = 51/266 (19%), Positives = 108/266 (40%), Gaps = 10/266 (3%)

Query: 45  INYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWM 104
           +NY +L+LA+ADL         ++Y +L   +V+G   C + G+       I  ++ + +
Sbjct: 72  LNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVL 131

Query: 105 SVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLD 164
           +++RY+ V KP+       +      +AFTW+ +     PPL+ +S    +     C +D
Sbjct: 132 AIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID 190

Query: 165 WGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPS 224
           +      T     ++    +  I+      F   + + +      ++  +A  +      
Sbjct: 191 YYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 250

Query: 225 HNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGI 284
             M   +++ F + WLPY  V  Y      I +        +   +  +    ++V+  +
Sbjct: 251 TRMVIIMVIAFLICWLPYAGVAFY------IFTHQGSDFGPIFMTIPAFFAKTSAVYNPV 304

Query: 285 VLILMSPQFRIMLRLLCISVCCKQKS 310
           + I+M+ QFR  +       CC +  
Sbjct: 305 IYIMMNKQFRNCMVTTL---CCGKNP 327


>d1ex0a4 d.3.1.4 (A:191-510) Transglutaminase catalytic domain
           {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
          Length = 320

 Score = 28.2 bits (63), Expect = 1.3
 Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 73  AQDWVYGNVICRIVGYIEVTLWVICNY-----TFMWMSVDRYLAVRKPLRYETVQTKTRC 127
            Q WV+  V    +  + +   ++ NY         + +D +L              T+ 
Sbjct: 122 GQCWVFAGVFNTFLRCLGIPARIVTNYFSAHDNDANLQMDIFL----EEDGNVNSKLTKD 177

Query: 128 QCWMAFTWISSAM 140
             W    W  + M
Sbjct: 178 SVWNYHCWNEAWM 190


>d1tkla_ d.248.1.1 (A:) Coproporphyrinogen III oxidase {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 325

 Score = 26.2 bits (57), Expect = 5.1
 Identities = 13/107 (12%), Positives = 30/107 (28%), Gaps = 9/107 (8%)

Query: 154 YDEDGYICMLDWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYA 213
           +++DG      +GG A  T         PS +       +       L          + 
Sbjct: 137 WNQDGTPQTWWFGGGADLT---------PSYLYEEDGQLFHQLHKDALDKHDTALYPRFK 187

Query: 214 TALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIP 260
               E         +  +   F+  +      ++ + +     +F+P
Sbjct: 188 KWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLP 234


>d1vjja4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain
           {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
          Length = 321

 Score = 25.5 bits (56), Expect = 9.2
 Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 12/75 (16%)

Query: 73  AQDWVYGNVICRIVGYIEVTLWVICNY-----TFMWMSVDRYL-AVRKPLRYETVQTKTR 126
            Q WV+   +   +  + +   VI N+     T   +SVD Y   +  PL       K  
Sbjct: 130 GQCWVFAGTLNTALRSLGIPSRVITNFNSAHDTDRNLSVDVYYDPMGNPLD------KGS 183

Query: 127 CQCWMAFTWISSAMV 141
              W    W     V
Sbjct: 184 DSVWNFHVWNEGWFV 198


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.141    0.475 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,327,401
Number of extensions: 62894
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 15
Length of query: 323
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,240,546
Effective search space: 295249948
Effective search space used: 295249948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.3 bits)