BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16125
(162 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UX3|A Chain A, Crystal Structure Of Domain-Swapped Fam96a Minor Dimer
pdb|3UX3|B Chain B, Crystal Structure Of Domain-Swapped Fam96a Minor Dimer
Length = 130
Score = 129 bits (325), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/123 (53%), Positives = 87/123 (70%), Gaps = 3/123 (2%)
Query: 36 EFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQV---NNETNQIKVNFTPTIPHCSMA 92
E + E++DLIR I DPE P TLEEL VV S ++V N E + + FTPT+PHCS+A
Sbjct: 7 EEKALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLA 66
Query: 93 TLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTLIGVIN 152
TLIGL +RV+L R LP + K+ + I+ G+HSTE INKQ+ DKERVAAA+EN L ++
Sbjct: 67 TLIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVE 126
Query: 153 QCI 155
QC+
Sbjct: 127 QCV 129
>pdb|3UX2|A Chain A, Crystal Structure Of Domain-Swapped Fam96a Major Dimer
Length = 130
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 84/118 (71%), Gaps = 3/118 (2%)
Query: 41 EIFDLIRNIYDPEHPLTLEELHVVDLSLIQV---NNETNQIKVNFTPTIPHCSMATLIGL 97
E++DLIR I DPE P TLEEL VV S ++V N E + + FTPT+PHCS+ATLIGL
Sbjct: 12 EVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGL 71
Query: 98 SIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTLIGVINQCI 155
+RV+L R LP + K+ + I+ G+HSTE INKQ+ DKERVAAA EN L ++ QC+
Sbjct: 72 CLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAXENPNLREIVEQCV 129
>pdb|2DAJ|A Chain A, Solution Structure Of The Novel Identified
Ubiquitin-Like Domain In The Human Cobl-Like 1 Protein
Length = 91
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 8 LENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDL 66
L+ + P + SKCE P+ + + ++ S+E DL +++ D L L EL+ +D+
Sbjct: 33 LQELAPIICSKCEFDPL-----HTLLLKDYQSQEPLDLTKSLND----LGLRELYAMDV 82
>pdb|1UWD|A Chain A, Nmr Structure Of A Protein With Unknown Function From
Thermotoga Maritima (Tm0487), Which Belongs To The Duf59
Family.
pdb|1WCJ|A Chain A, Conserved Hypothetical Protein Tm0487 From Thermotoga
Maritima
Length = 103
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 39 SREIFDLIRNIYDPEHPLTLEELHVVDLSL---IQVNNETNQIKVNFTPTIPHCSMATLI 95
++ + ++N+ D E L VV L L IQ++++ N +KV T T P C +A +I
Sbjct: 8 KEDVLNALKNVIDFEL-----GLDVVSLGLVYDIQIDDQ-NNVKVLMTMTTPMCPLAGMI 61
Query: 96 GLSIRVRLIRALPARFKVVVEIT 118
LS I+ + V VE+T
Sbjct: 62 -LSDAEEAIKKIEGVNNVEVELT 83
>pdb|3B98|A Chain A, Crystal Structure Of Zebrafish Prostacyclin Synthase
(Cytochrome P450 8a1)
pdb|3B98|B Chain B, Crystal Structure Of Zebrafish Prostacyclin Synthase
(Cytochrome P450 8a1)
pdb|3B99|A Chain A, Crystal Structure Of Zebrafish Prostacyclin Synthase
(Cytochrome P450 8a1) In Complex With Substrate Analog
U51605
pdb|3B99|B Chain B, Crystal Structure Of Zebrafish Prostacyclin Synthase
(Cytochrome P450 8a1) In Complex With Substrate Analog
U51605
Length = 475
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 5 GDVLENINPTLY------SKCED---RPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHP 55
GD+ LY S C D V + DQ Y + + IF++I ++PE
Sbjct: 52 GDIFTVRAAGLYITVLLDSNCYDAVLSDVASLDQTSYA--QVLMKRIFNMILPSHNPESE 109
Query: 56 LTLEELHVVDLSLIQVNNET-NQIKVNFTPT 85
E+H SL Q++N N +++ TP+
Sbjct: 110 KKRAEMHFQGASLTQLSNSMQNNLRLLMTPS 140
>pdb|1PFO|A Chain A, Perfringolysin O
Length = 500
Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 26 AEDQNDYITDEFDSREIFDLIRN-----IYDPEHPLTLEELHVVDLSLIQVNNETNQIKV 80
A++ N +T +FD EI +I++ +P +P++ + + D S+ V+N+T+ I+
Sbjct: 327 AQEHNKVVTKDFD--EIRKVIKDNATFSTKNPAYPISYTSVFLKDNSVAAVHNKTDYIET 384
Query: 81 NFT 83
T
Sbjct: 385 TST 387
>pdb|2BK2|A Chain A, The Prepore Structure Of Pneumolysin, Obtained By Fitting
The Alpha Carbon Trace Of Perfringolysin O Into A
Cryo-em Map
Length = 456
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 26 AEDQNDYITDEFDSREIFDLIRN-----IYDPEHPLTLEELHVVDLSLIQVNNETNQIKV 80
A++ N +T +FD EI +I++ +P +P++ + + D S+ V+N+T+ I+
Sbjct: 283 AQEHNKVVTKDFD--EIRKVIKDNATFSTKNPAYPISYTSVFLKDNSVAAVHNKTDYIET 340
Query: 81 NFT 83
T
Sbjct: 341 TST 343
>pdb|2BK1|A Chain A, The Pore Structure Of Pneumolysin, Obtained By Fitting The
Alpha Carbon Trace Of Perfringolysin O Into A Cryo-em
Map
Length = 448
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 26 AEDQNDYITDEFDSREIFDLIRN-----IYDPEHPLTLEELHVVDLSLIQVNNETNQIKV 80
A++ N +T +FD EI +I++ +P +P++ + + D S+ V+N+T+ I+
Sbjct: 275 AQEHNKVVTKDFD--EIRKVIKDNATFSTKNPAYPISYTSVFLKDNSVAAVHNKTDYIET 332
Query: 81 NFT 83
T
Sbjct: 333 TST 335
>pdb|1M3J|A Chain A, Crystal Form Ii Of Perfringolysin O
pdb|1M3J|B Chain B, Crystal Form Ii Of Perfringolysin O
pdb|1M3I|A Chain A, Perfringolysin O, New Crystal Form
pdb|1M3I|B Chain B, Perfringolysin O, New Crystal Form
pdb|1M3I|C Chain C, Perfringolysin O, New Crystal Form
pdb|1M3I|D Chain D, Perfringolysin O, New Crystal Form
Length = 471
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 26 AEDQNDYITDEFDSREIFDLIRN-----IYDPEHPLTLEELHVVDLSLIQVNNETNQIKV 80
A++ N +T +FD EI +I++ +P +P++ + + D S+ V+N+T+ I+
Sbjct: 298 AQEHNKVVTKDFD--EIRKVIKDNATFSTKNPAYPISYTSVFLKDNSVAAVHNKTDYIET 355
Query: 81 NFT 83
T
Sbjct: 356 TST 358
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 13 PTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLT 57
P + C+DR V A D D+ +F L + +P+HP +
Sbjct: 172 PLFDASCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFS 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,785,636
Number of Sequences: 62578
Number of extensions: 179892
Number of successful extensions: 472
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 13
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)