RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16125
(162 letters)
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain
swapping, protein-protein interaction, alpha and beta
protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB:
3ux3_A
Length = 130
Score = 182 bits (462), Expect = 3e-60
Identities = 66/129 (51%), Positives = 89/129 (68%), Gaps = 3/129 (2%)
Query: 30 NDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQV---NNETNQIKVNFTPTI 86
++ E + E++DLIR I DPE P TLEEL VV S ++V N E + + FTPT+
Sbjct: 1 SNARIMEEKALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTV 60
Query: 87 PHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENST 146
PHCS+ATLIGL +RV+L R LP + K+ + I+ G+HSTE INKQ+ DKERVAAA+EN
Sbjct: 61 PHCSLATLIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPN 120
Query: 147 LIGVINQCI 155
L ++ QC+
Sbjct: 121 LREIVEQCV 129
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural
genomics, center for structural genomics of infectious
diseases, csgid; 2.10A {Bacillus anthracis}
Length = 108
Score = 46.3 bits (111), Expect = 2e-07
Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 30 NDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLI-QVN-NETNQIKVNFTPTIP 87
++ ++ E +++ + + DPE + +V+L L+ V +E N + T T
Sbjct: 1 SNAMSQEAFENKLYANLEAVIDPELGV-----DIVNLGLVYDVTADENNNAVITMTMTSI 55
Query: 88 HCSMATLIGLSIRVRLIRALPARFKVVVEIT 118
C MA I ++ L +P ++ V +
Sbjct: 56 GCPMAGQIVSDVKKVLSTNVPEVNEIEVNVV 86
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose
reductase, plasmid, oxidoreductase, structural genomics,
NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A
3cq3_A*
Length = 103
Score = 45.6 bits (109), Expect = 3e-07
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 34 TDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLI-QVNNETNQIKVNFTPTIPHCSMA 92
+ + L+ +YDPE L VV+L LI + E + V T T P C +
Sbjct: 3 ARNPLEAQAWALLEAVYDPELG-----LDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLH 57
Query: 93 TLIGLSIRVRLIRALPARFKVVVEIT 118
+G ++R + LP +V VE+T
Sbjct: 58 DSLGEAVRQA-LSRLPGVEEVEVEVT 82
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta
fold,structural genomics joint center for structural
genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2
PDB: 1wcj_A
Length = 103
Score = 41.7 bits (99), Expect = 7e-06
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 33 ITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLI-QVN-NETNQIKVNFTPTIPHCS 90
++ + ++ + ++N+ D E L VV L L+ + ++ N +KV T T P C
Sbjct: 2 MSKKVTKEDVLNALKNVIDFELG-----LDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCP 56
Query: 91 MATLIGLSIRVRLIRALPARFKVVVEIT 118
+A +I I+ + V VE+T
Sbjct: 57 LAGMILSDAEEA-IKKIEGVNNVEVELT 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.009
Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 41/128 (32%)
Query: 61 LHVVDLSLIQVN---NETNQIKVNFTPTIPHCSMA---------------TLIGLSIRVR 102
L + +L+ QV N+TN P ++ +L GL++ +R
Sbjct: 339 LSISNLTQEQVQDYVNKTNS----HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 103 LIRALP------ARF---KVVVE-----IT-PGSHST--EFAINKQLADKERVAAALENS 145
+A F K+ + P HS A + D + +
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASP-FHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 146 TL-IGVIN 152
+ I V +
Sbjct: 454 DIQIPVYD 461
Score = 33.9 bits (77), Expect = 0.018
Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 65/164 (39%)
Query: 30 NDYITDEFDSREIFDLIRNIYDPEHPL----------TLEEL--HVVD--------LSLI 69
+DY F+ +R++Y H L TL EL +D L+++
Sbjct: 167 DDY----------FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 70 Q-VNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEI---TPGSHSTE 125
+ + N +N ++ +IP S LIG+ ++L A + V ++ TPG +
Sbjct: 217 EWLENPSNTPDKDYLLSIP-ISC-PLIGV---IQL-----AHYVVTAKLLGFTPGELRSY 266
Query: 126 F--------------AINKQLAD-----KERVAAALENSTLIGV 150
AI D V A+ IGV
Sbjct: 267 LKGATGHSQGLVTAVAI--AETDSWESFFVSVRKAITVLFFIGV 308
Score = 30.4 bits (68), Expect = 0.26
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 32/92 (34%)
Query: 54 HPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKV 113
+P T +++ SL NNE P+ P M ++ L+ + ++ +
Sbjct: 314 YPNTSLPPSILEDSL--ENNEG-------VPS-P---MLSISNLT-QEQVQDYV------ 353
Query: 114 VVEITPGSHSTEFAINKQLADKERVAAALENS 145
N L ++V +L N
Sbjct: 354 ------------NKTNSHLPAGKQVEISLVNG 373
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.034
Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 29 QNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFT 83
++ ++ + FD +++ D+ ++I L+ EE +D +I + + F
Sbjct: 26 EDAFVDN-FDCKDVQDMPKSI------LSKEE---ID-HIIMSKDAVSGTLRLFW 69
Score = 32.5 bits (73), Expect = 0.058
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 8/52 (15%)
Query: 31 DYITD--EFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQV--NNETNQI 78
YI D R + ++ + E L + L+++ E I
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSK----YTDLLRIALMAEDEAI 579
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 27.7 bits (61), Expect = 0.92
Identities = 7/41 (17%), Positives = 10/41 (24%)
Query: 46 IRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTI 86
I Y + + + V FTPT
Sbjct: 40 IAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTF 80
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 28.4 bits (64), Expect = 1.1
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 114 VVEITPGSHSTEFAINKQLADKERVAAALENSTLIG------VINQCISRPS 159
V+ I PG TEF++ + ++E+ +++T + +I SR
Sbjct: 213 VILIAPGLVETEFSLVRYRGNEEQAKNVYKDTTPLMADDVADLIVYATSRKQ 264
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA,
riken structural genomics/proteomics initiative, unknown
function; NMR {Mus musculus} SCOP: a.40.3.1
Length = 164
Score = 26.9 bits (59), Expect = 2.5
Identities = 10/75 (13%), Positives = 29/75 (38%)
Query: 5 GDVLENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVV 64
VL I+ +S+ + + +++ + +++ I + Y + E +
Sbjct: 40 AQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGITSYYHEFLGQQISEELIP 99
Query: 65 DLSLIQVNNETNQIK 79
DL+ I + ++
Sbjct: 100 DLNQITECADPVELG 114
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote
structure initiative, NEW YORK SGX research center for
STRU genomics; 1.88A {Caenorhabditis elegans}
Length = 481
Score = 27.2 bits (61), Expect = 2.8
Identities = 6/13 (46%), Positives = 7/13 (53%), Gaps = 1/13 (7%)
Query: 42 IFDLIRNIYDPEH 54
IFD R I D +
Sbjct: 443 IFDG-RLILDQKA 454
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 26.8 bits (60), Expect = 3.2
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 114 VVEITPGSHSTEFAINKQLADKERVAAALENSTLIG------VINQCISRPS 159
V + PG +EF++ + D+ R + I I +++P+
Sbjct: 196 VTNLEPGLCESEFSLVRFGGDQARYDKTYAGAHPIQPEDIAETIFWIMNQPA 247
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 26.0 bits (57), Expect = 6.2
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 14/61 (22%)
Query: 52 PEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMA------TLIGLSIRVRLIR 105
P P + LS + N+ + + P I HCS A T+I + + + I
Sbjct: 423 PSEPGGV-------LSFLDQINQRQESLPHAGPIIVHCS-AGIGRTGTIIVIDMLMENIS 474
Query: 106 A 106
Sbjct: 475 T 475
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S
genomics consortium, SGC, oxidoreductase; HET: NAD UPG;
2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A*
3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Length = 467
Score = 26.0 bits (58), Expect = 6.3
Identities = 6/13 (46%), Positives = 7/13 (53%), Gaps = 1/13 (7%)
Query: 42 IFDLIRNIYDPEH 54
IFD R + D H
Sbjct: 439 IFDG-RRVLDGLH 450
>2bem_A CBP21; chitin-binding protein, chitin degradation, chitin-binding,
FNIII-like fold; 1.55A {Serratia marcescens} SCOP:
b.1.18.2 PDB: 2lhs_A 2ben_A
Length = 170
Score = 25.6 bits (56), Expect = 6.6
Identities = 7/38 (18%), Positives = 10/38 (26%)
Query: 50 YDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIP 87
+D PLT + +V IP
Sbjct: 101 WDASQPLTRASFDLTPFCQFNDGGAIPAAQVTHQCNIP 138
>3c9g_A UPF0200/UPF0201 protein AF_1395; uncharacterized UPF0201 protein
AF_135, structural genomics, PSI-II, dimer; 2.30A
{Archaeoglobus fulgidus dsm 4304}
Length = 142
Score = 25.3 bits (55), Expect = 7.2
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 123 STEFAINKQLADKERVAAALENSTLIGV 150
+NKQ A R+ EN+ L +
Sbjct: 81 EVTIYLNKQTATVSRINFCDENAVLSPI 108
>2cm2_A Tyrosine-protein phosphatase non-receptor type 1; polymorphism,
phosphorylation, endoplasmic reticulum, oxidation,
hydrolase, acetylation; 1.5A {Homo sapiens} SCOP:
c.45.1.2 PDB: 2cm3_A 2cmb_A* 2cmc_A* 2cne_A* 3a5j_A
2cma_A 3a5k_A 3eu0_A 3sme_A 2azr_A* 2b07_A* 2h4g_A*
2h4k_A* 2hb1_A* 2qbp_A* 2qbq_A* 2qbr_A* 2qbs_A* 2zmm_A*
2zn7_A* ...
Length = 304
Score = 25.7 bits (57), Expect = 7.2
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 14/68 (20%)
Query: 52 PEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMA------TLIGLSIRVRLIR 105
PE P + L+ + E+ + P + HCS A T + L+
Sbjct: 191 PESPASF-------LNFLFKVRESGSLSPEHGPVVVHCS-AGIGRSGTFCLADTCLLLMD 242
Query: 106 ALPARFKV 113
V
Sbjct: 243 KRKDPSSV 250
>1zc0_A Tyrosine-protein phosphatase, non-receptor type 7; heptp, human
tyrosine phosphatase catalytic domain, LC-PTP,
hydrolase; 1.85A {Homo sapiens} PDB: 2gp0_A 2qdc_A
2hvl_A 2qdp_A 2qdm_A 3o4s_A 3o4t_A* 3o4u_A* 3d44_A*
3d42_A* 2a3k_A
Length = 309
Score = 25.8 bits (57), Expect = 7.4
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 14/61 (22%)
Query: 52 PEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMA------TLIGLSIRVRLIR 105
PE L L L+ E+ + + P + HCS A I I + ++
Sbjct: 210 PESAGPL-------LRLVAEVEESPETAAHPGPIVVHCS-AGIGRTGCFIATRIGCQQLK 261
Query: 106 A 106
A
Sbjct: 262 A 262
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate
synthesis, exopolysaccharide, C fibrosis; HET: UGA;
1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Length = 478
Score = 26.0 bits (58), Expect = 7.9
Identities = 8/12 (66%), Positives = 10/12 (83%), Gaps = 1/12 (8%)
Query: 42 IFDLIRNIYDPE 53
IFD RN+Y+PE
Sbjct: 435 IFDG-RNLYEPE 445
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 25.6 bits (57), Expect = 8.2
Identities = 9/51 (17%), Positives = 13/51 (25%), Gaps = 5/51 (9%)
Query: 114 VVEITPGSHSTEFAINKQLADKERVAAALENSTLIG-----VINQCISRPS 159
V + PG +E A + L + Q I P
Sbjct: 176 VTCVNPGVVESELAGTITHEETMAAMDTYRAIALQPADIARAVRQVIEAPQ 226
>2cjz_A Human protein tyrosine phosphatase PTPN5; protein phosphatase,
STEP, hydrolase; HET: PTR; 1.70A {Homo sapiens} PDB:
2bij_A 2bv5_A*
Length = 305
Score = 25.4 bits (56), Expect = 9.0
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 15/62 (24%)
Query: 52 PEHPLTLEELHVVDLSLIQ-VNNETNQIKVNFTPTIPHCSMA------TLIGLSIRVRLI 104
P+ L L L++ V Q + P I H S A I SI + +
Sbjct: 207 PDRAPPL-------LHLVREVEEAAQQEGPHCAPIIVHSS-AGIGRTGCFIATSICCQQL 258
Query: 105 RA 106
R
Sbjct: 259 RQ 260
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.50A {Pseudomonas aeruginosa}
PDB: 2obk_A
Length = 104
Score = 24.7 bits (54), Expect = 9.1
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 38 DSREIFDLIRNIYDPEHPL 56
+++ + +R+ DP+ L
Sbjct: 70 EAKALKQRVRDRIDPQRDL 88
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.385
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,571,138
Number of extensions: 150200
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 45
Length of query: 162
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,300,587
Effective search space: 326844612
Effective search space used: 326844612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)