RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16125
         (162 letters)



>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 102

 Score = 40.6 bits (95), Expect = 6e-06
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 33  ITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMA 92
           ++ +    ++ + ++N+ D E  L +  L +V        ++ N +KV  T T P C +A
Sbjct: 1   MSKKVTKEDVLNALKNVIDFELGLDVVSLGLVYDI---QIDDQNNVKVLMTMTTPMCPLA 57

Query: 93  TLIGLSIRVRLIRALPARFKVVVEIT 118
            +I        I+ +     V VE+T
Sbjct: 58  GMILSDAE-EAIKKIEGVNNVEVELT 82


>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus
           thermophilus [TaxId: 274]}
          Length = 91

 Score = 38.7 bits (90), Expect = 2e-05
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 41  EIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIR 100
           + + L+  +YDPE  L +  L ++      +  E  +  V  T T P C +   +G ++R
Sbjct: 5   QAWALLEAVYDPELGLDVVNLGLIY----DLVVEPPRAYVRMTLTTPGCPLHDSLGEAVR 60

Query: 101 VRLIRALPARFKVVVEIT 118
            + +  LP   +V VE+T
Sbjct: 61  -QALSRLPGVEEVEVEVT 77


>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 86

 Score = 24.6 bits (54), Expect = 2.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 38 DSREIFDLIRNIYDPEHPL 56
            +E+   IR++ DPE  L
Sbjct: 67 GPKELKQRIRDLIDPERDL 85


>d2ibna1 a.211.1.4 (A:37-285) Myo-inositol oxygenase MioX {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 249

 Score = 25.5 bits (56), Expect = 2.9
 Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 15  LYSKCEDRPVTAEDQNDY--ITDEF 37
           LY+KC D P   + +  Y  + D++
Sbjct: 218 LYTKCPDLPDVDKLRPYYQGLIDKY 242


>d1zgha1 b.46.1.1 (A:165-226) Methionyl-tRNAfmet
          formyltransferase, C-terminal domain {Clostridium
          thermocellum [TaxId: 1515]}
          Length = 62

 Score = 23.1 bits (50), Expect = 6.2
 Identities = 10/51 (19%), Positives = 22/51 (43%)

Query: 33 ITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFT 83
          I+ +FD  +I+D IR +    +P    +     L   + + +  +I  +  
Sbjct: 8  ISPDFDLEKIYDYIRMLDGEGYPRAFIKYGKYRLEFSRASMKNGKIIADVE 58


>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine
           reductase) {Nematode (Caenorhabditis elegans) [TaxId:
           6239]}
          Length = 235

 Score = 24.1 bits (51), Expect = 8.5
 Identities = 12/102 (11%), Positives = 30/102 (29%), Gaps = 7/102 (6%)

Query: 48  NIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRAL 107
           +++       L   H+    L+Q+      +    +      + A +  L+  +    + 
Sbjct: 103 SVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSG 162

Query: 108 PARFKVVVEITPGSHSTEF-------AINKQLADKERVAAAL 142
                 V+ I P +  T         A +        ++  L
Sbjct: 163 LPDNSAVLTIMPVTLDTPMNRKWMPNADHSSWTPLSFISEHL 204


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 622,055
Number of extensions: 27728
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 12
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)