BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16135
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IW2|A Chain A, Crystal Structure Of Human Prolidase
pdb|2IW2|B Chain B, Crystal Structure Of Human Prolidase
pdb|2OKN|A Chain A, Crystal Strcture Of Human Prolidase
pdb|2OKN|B Chain B, Crystal Strcture Of Human Prolidase
Length = 494
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 98/173 (56%), Positives = 130/173 (75%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
RV KT++EL+V+RY ++ISSEAHR VM+ V GM EY+ E++F+HY GG RH +YTC
Sbjct: 185 RVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSSYTC 244
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
IC SG N AVLHYGHA APND+ + +GDM +FDMG Y +ASDITCS+P NGKFT Q
Sbjct: 245 ICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTADQK 304
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELME 214
+Y AVL ++RAVM A KPGV W DMH LA+++ L +L +G+L G++D +++
Sbjct: 305 AVYEAVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQ 357
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 49/66 (74%)
Query: 214 EESYFHWAFGVYEPDFYGVIEMTTGRSILFAPRLSEDYVVWMGQLPTLDEYKEKYQVDEV 273
+ES+FHWAFGV EP YGVI++ TG+S LF PRL + WMG++ + + +KEKY VD+V
Sbjct: 68 QESFFHWAFGVTEPGCYGVIDVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEKYAVDDV 127
Query: 274 YFSDEV 279
+ DE+
Sbjct: 128 QYVDEI 133
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 138/265 (52%), Gaps = 31/265 (11%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
R+ K+ E+ V+R A I++ AH M K GM+EY E H+ G+R+ +Y
Sbjct: 173 RLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEI-HHEFNRHGARYPSYNT 231
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I SG NG +LHY N+ + DGD+++ D G Y GYA DIT ++PVNGKFT+ Q
Sbjct: 232 IVGSGENGCILHY----TENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQR 287
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELMEES----Y 217
IY+ VL + + +PG S +++ ++++S L+ +G+L+G +DEL+ ++ +
Sbjct: 288 EIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPF 347
Query: 218 F-----HW------AFGVYEPDFYGVIEMTTGRSILFAPRLSEDYVVWMGQLPTLDEYKE 266
F HW GVY D ++E G + AP L Y+ ++P E
Sbjct: 348 FMHGLSHWLGLDVHDVGVYGQDRSRILE--PGMVLTVAPGL---YIAPDAEVP------E 396
Query: 267 KYQVDEVYFSDEVMYSRAYLHDITA 291
+Y+ + D+++ + ++TA
Sbjct: 397 QYRGIGIRIEDDIVITETGNENLTA 421
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 138/265 (52%), Gaps = 31/265 (11%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
R+ K+ E+ V+R A I++ AH M K GM+EY E H+ G+R+ +Y
Sbjct: 173 RLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEI-HHEFNRHGARYPSYNT 231
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I SG NG +LHY N+ + DGD+++ D G Y GYA DIT ++PVNGKFT+ Q
Sbjct: 232 IVGSGENGCILHY----TENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQR 287
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELMEES----Y 217
IY+ VL + + +PG S +++ ++++S L+ +G+L+G +DEL+ ++ +
Sbjct: 288 EIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPF 347
Query: 218 F-----HW------AFGVYEPDFYGVIEMTTGRSILFAPRLSEDYVVWMGQLPTLDEYKE 266
F HW GVY D ++E G + AP L Y+ ++P E
Sbjct: 348 FMHGLSHWLGLDVHDVGVYGQDRSRILE--PGMVLTVAPGL---YIAPDAEVP------E 396
Query: 267 KYQVDEVYFSDEVMYSRAYLHDITA 291
+Y+ + D+++ + ++TA
Sbjct: 397 QYRGIGIRIEDDIVITETGNENLTA 421
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 137/265 (51%), Gaps = 31/265 (11%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
R+ K+ E+ V+R A I++ AH M K GM+EY E H+ G+R+ +Y
Sbjct: 173 RLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEI-HHEFNRHGARYPSYNT 231
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I SG NG +LHY N+ + DGD+++ D G Y GYA DIT ++PVNGKFT+ Q
Sbjct: 232 IVGSGENGCILHY----TENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQR 287
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELMEES----Y 217
IY+ VL + + +PG S +++ ++++S L+ +G+L+G +DEL+ ++ +
Sbjct: 288 EIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPF 347
Query: 218 F-----HW------AFGVYEPDFYGVIEMTTGRSILFAPRLSEDYVVWMGQLPTLDEYKE 266
F HW GVY D ++E G + P L Y+ ++P E
Sbjct: 348 FMHGLSHWLGLDVHDVGVYGQDRSRILE--PGMVLTVEPGL---YIAPDAEVP------E 396
Query: 267 KYQVDEVYFSDEVMYSRAYLHDITA 291
+Y+ + D+++ + ++TA
Sbjct: 397 QYRGIGIRIEDDIVITETGNENLTA 421
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 137/265 (51%), Gaps = 31/265 (11%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
R+ K+ E+ V+R A I++ AH M K GM+EY E H+ G+R+ +Y
Sbjct: 173 RLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEI-HHEFNRHGARYPSYNT 231
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I SG NG +LHY N+ + DGD+++ D G Y GYA DIT ++PVNGKFT+ Q
Sbjct: 232 IVGSGENGCILHY----TENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQR 287
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELMEES----Y 217
IY+ VL + + +PG S +++ ++++S L+ +G+L+G +DEL+ ++ +
Sbjct: 288 EIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPF 347
Query: 218 F-----HW------AFGVYEPDFYGVIEMTTGRSILFAPRLSEDYVVWMGQLPTLDEYKE 266
F HW GVY D ++E G + P L Y+ ++P E
Sbjct: 348 FMHGLSHWLGLDVADVGVYGQDRSRILE--PGMVLTVEPGL---YIAPDAEVP------E 396
Query: 267 KYQVDEVYFSDEVMYSRAYLHDITA 291
+Y+ + D+++ + ++TA
Sbjct: 397 QYRGIGIRIEDDIVITETGNENLTA 421
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 137/265 (51%), Gaps = 31/265 (11%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
R+ K+ E+ V+R A I++ AH M K GM+EY E H+ G+R+ +Y
Sbjct: 173 RLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEI-HHEFNRHGARYPSYNT 231
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I SG NG +LHY N+ + DGD+++ D G Y GYA DIT ++PVNGKFT+ Q
Sbjct: 232 IVGSGENGCILHY----TENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQR 287
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELMEES----Y 217
IY+ VL + + +PG S +++ ++++S L+ +G+L+G +DEL+ ++ +
Sbjct: 288 EIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPF 347
Query: 218 F-----HW------AFGVYEPDFYGVIEMTTGRSILFAPRLSEDYVVWMGQLPTLDEYKE 266
F HW GVY D ++E G + P L Y+ ++P E
Sbjct: 348 FMAGLSHWLGLDVHDVGVYGQDRSRILE--PGMVLTVEPGL---YIAPDAEVP------E 396
Query: 267 KYQVDEVYFSDEVMYSRAYLHDITA 291
+Y+ + D+++ + ++TA
Sbjct: 397 QYRGIGIRIEDDIVITETGNENLTA 421
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 137/265 (51%), Gaps = 31/265 (11%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
R+ K+ E+ V+R A I++ AH M K GM+EY E H+ G+R+ +Y
Sbjct: 173 RLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEI-HHEFNRHGARYPSYNT 231
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I SG NG +LHY N+ + DGD+++ D G Y GYA DIT ++PVNGKFT+ Q
Sbjct: 232 IVGSGENGCILHY----TENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQR 287
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELMEES----Y 217
IY+ VL + + +PG S +++ ++++S L+ +G+L+G +DEL+ ++ +
Sbjct: 288 EIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPF 347
Query: 218 F-----HW------AFGVYEPDFYGVIEMTTGRSILFAPRLSEDYVVWMGQLPTLDEYKE 266
F HW GVY D ++E G + P L Y+ ++P E
Sbjct: 348 FMHGLSHWLGLDVHDVGVYGQDRSRILE--PGMVLTVEPGL---YIAPDAEVP------E 396
Query: 267 KYQVDEVYFSDEVMYSRAYLHDITA 291
+Y+ + D+++ + ++TA
Sbjct: 397 QYRGIGIRIEDDIVITETGNENLTA 421
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 137/265 (51%), Gaps = 31/265 (11%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
R+ K+ E+ V+R A I++ AH M K GM+EY E H+ G+R+ +Y
Sbjct: 173 RLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEI-HHEFNRHGARYPSYNT 231
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I SG NG +LHY N+ + DGD+++ D G Y GYA DIT ++PVNGKFT+ Q
Sbjct: 232 IVGSGENGCILHY----TENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQR 287
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELMEES----Y 217
IY+ VL + + +PG S +++ ++++S L+ +G+L+G +DEL+ ++ +
Sbjct: 288 EIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPF 347
Query: 218 F-----HW------AFGVYEPDFYGVIEMTTGRSILFAPRLSEDYVVWMGQLPTLDEYKE 266
F HW GVY D ++E G + P L Y+ ++P E
Sbjct: 348 FMHGLSHWLGLDVHDVGVYGQDRSRILE--PGMVLTVEPGL---YIAPDAEVP------E 396
Query: 267 KYQVDEVYFSDEVMYSRAYLHDITA 291
+Y+ + D+++ + ++TA
Sbjct: 397 QYRGIGIRIEDDIVITETGNENLTA 421
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 136/265 (51%), Gaps = 31/265 (11%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
R+ K+ E+ V+R A I++ AH M K GM+EY E H+ G+R+ +Y
Sbjct: 173 RLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEI-HHEFNRHGARYPSYNT 231
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I SG NG +L Y N+ + DGD+++ D G Y GYA DIT ++PVNGKFT+ Q
Sbjct: 232 IVGSGENGCILAY----TENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQR 287
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELMEES----Y 217
IY+ VL + + +PG S +++ ++++S L+ +G+L+G +DEL+ ++ +
Sbjct: 288 EIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPF 347
Query: 218 F-----HW------AFGVYEPDFYGVIEMTTGRSILFAPRLSEDYVVWMGQLPTLDEYKE 266
F HW GVY D ++E G + P L Y+ ++P E
Sbjct: 348 FMHGLSHWLGLDVHDVGVYGQDRSRILE--PGMVLTVEPGL---YIAPDAEVP------E 396
Query: 267 KYQVDEVYFSDEVMYSRAYLHDITA 291
+Y+ + D+++ + ++TA
Sbjct: 397 QYRGIGIRIEDDIVITETGNENLTA 421
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 136/265 (51%), Gaps = 31/265 (11%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
R+ K+ E+ V+R A I++ AH M K GM+EY E H+ G+R+ +Y
Sbjct: 173 RLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEI-HHEFNRHGARYPSYNT 231
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I SG NG +LHY N+ + DGD+++ G Y GYA DIT ++PVNGKFT+ Q
Sbjct: 232 IVGSGENGCILHY----TENECEMRDGDLVLIAAGCEYKGYAGDITRTFPVNGKFTQAQR 287
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELMEES----Y 217
IY+ VL + + +PG S +++ ++++S L+ +G+L+G +DEL+ ++ +
Sbjct: 288 EIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPF 347
Query: 218 F-----HW------AFGVYEPDFYGVIEMTTGRSILFAPRLSEDYVVWMGQLPTLDEYKE 266
F HW GVY D ++E G + P L Y+ ++P E
Sbjct: 348 FMHGLSHWLGLDVHDVGVYGQDRSRILE--PGMVLTVEPGL---YIAPDAEVP------E 396
Query: 267 KYQVDEVYFSDEVMYSRAYLHDITA 291
+Y+ + D+++ + ++TA
Sbjct: 397 QYRGIGIRIEDDIVITETGNENLTA 421
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 136/265 (51%), Gaps = 31/265 (11%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
R+ K+ E+ V+R A I++ AH M K GM+EY E H+ G+R+ +Y
Sbjct: 173 RLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEI-HHEFNRHGARYPSYNT 231
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I SG NG +LHY N+ + DGD+++ D G Y GYA IT ++PVNGKFT+ Q
Sbjct: 232 IVGSGENGCILHY----TENECEMRDGDLVLIDAGCEYKGYAGAITRTFPVNGKFTQAQR 287
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELMEES----Y 217
IY+ VL + + +PG S +++ ++++S L+ +G+L+G +DEL+ ++ +
Sbjct: 288 EIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPF 347
Query: 218 F-----HW------AFGVYEPDFYGVIEMTTGRSILFAPRLSEDYVVWMGQLPTLDEYKE 266
F HW GVY D ++E G + P L Y+ ++P E
Sbjct: 348 FMHGLSHWLGLDVHDVGVYGQDRSRILE--PGMVLTVEPGL---YIAPDAEVP------E 396
Query: 267 KYQVDEVYFSDEVMYSRAYLHDITA 291
+Y+ + D+++ + ++TA
Sbjct: 397 QYRGIGIRIEDDIVITETGNENLTA 421
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 101/175 (57%), Gaps = 4/175 (2%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
R+ K+ E+ V+R A I++ AH M K GM+EY E H+ G+R+ +Y
Sbjct: 173 RLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEI-HHEFNRHGARYPSYNT 231
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I SG NG +LHY + DGD+++ D G Y GYA DIT ++PVNGKFT+ Q
Sbjct: 232 IVGSGENGCILHYTENEC---XEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQR 288
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELMEES 216
IY+ VL + + +PG S +++ ++++S L+ +G+L+G +DEL+ ++
Sbjct: 289 EIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQN 343
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 102/178 (57%), Gaps = 7/178 (3%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
RV KT+ E+++++ A ++ + +V++ A EY+ EA F + L G +H A+
Sbjct: 169 RVFKTDEEIEIIKEAIAVTKDGIYNVLKHAKADXXEYELEAQFD-FTLKSSGIKHHAFNT 227
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I ASG N VLHY ND ++ +GD+++ D+G+ Y +DI+ ++P NG F+ +Q
Sbjct: 228 ILASGKNATVLHY----EDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQK 283
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELMEESYFH 219
IYN VL+A + E KPG+ + ++ A KV+ +GL++ DE + + Y+H
Sbjct: 284 QIYNIVLNALKETTEIIKPGLKFAALNEHAKKVLAEGCKAVGLIQE--DEELSKYYYH 339
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 90/154 (58%), Gaps = 6/154 (3%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
R+IKT+ E++++ A I+ +A + + +++ G E + A Y++ + G+ A+
Sbjct: 122 RIIKTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKV-EYLMKMNGAEKPAFDT 180
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I ASG A+ H G AS DKR+ GD++V D+G+ Y Y SDIT + V G EKQ
Sbjct: 181 IIASGHRSALPH-GVAS---DKRIERGDLVVIDLGALYNHYNSDITRTIVV-GSPNEKQR 235
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVV 195
IY VL A + +EAAKPG++ ++ +A +++
Sbjct: 236 EIYEIVLEAQKRAVEAAKPGMTAKELDSIAREII 269
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 89/157 (56%), Gaps = 6/157 (3%)
Query: 39 RYSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVA 98
R R+IK+E E+ ++ A I+ +A + + +++ G E + A Y++ + G+ A
Sbjct: 122 RDMRIIKSEKEIKIIEKACEIADKAVMAAIEEITEGKKEREVAAKV-EYLMKMNGAEKPA 180
Query: 99 YTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTE 158
+ I ASG A+ H G AS DKR+ GD++V D+G+ Y Y SDIT + V G E
Sbjct: 181 FDTIIASGYRSALPH-GVAS---DKRIERGDLVVIDLGALYQHYNSDITRTIVV-GSPNE 235
Query: 159 KQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVV 195
KQ IY VL A + +E+AKPG++ ++ +A ++
Sbjct: 236 KQKEIYEIVLEAQKKAVESAKPGITAKELDSIARNII 272
>pdb|3RVA|A Chain A, Crystal Structure Of Organophosphorus Acid Anhydrolase
From Alteromonas Macleodii
Length = 451
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 18/182 (9%)
Query: 40 YSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRH--- 96
Y R KT+ ELD MR A++++ H++ + G E+ + Y SR
Sbjct: 155 YQRAYKTDYELDCMREANKLAVAGHKAAEQAFREGKSEFDIN------LAYAAASRQGDN 208
Query: 97 -VAYTCICASGGNGAVLHYGHAS--APNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVN 153
V YT I A + ++LHY AP + R + D G++Y GYA+DIT +Y
Sbjct: 209 DVPYTSIVALNEHASILHYMQXDTVAPKESR-----SFLIDAGANYHGYAADITRTYAQE 263
Query: 154 GKFTEKQ-AYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDEL 212
G + AV ++++ KPGV++ D+H LA+ + L D G++ T E+
Sbjct: 264 GVHNSAMFRDLIQAVDKVTLTLVDSLKPGVAYTDIHLLAHDGIAQILHDTGMVNLTPPEI 323
Query: 213 ME 214
+E
Sbjct: 324 VE 325
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 86/157 (54%), Gaps = 6/157 (3%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
R++K E E++ ++ A IS A ++++ AGM E + A+ + Y + G+ VA+
Sbjct: 131 RMVKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALLE-YTMRKEGAEGVAFDT 189
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I ASG A+ H G AS DK V GD++V D G++Y Y +DIT + G+ +++
Sbjct: 190 IVASGCRSALPH-GKAS---DKVVERGDVIVIDFGATYENYCADITRVVSI-GEPSDEVK 244
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSK 198
+++ VL A ++ AK GV+ + +A + + K
Sbjct: 245 EVHSIVLEAQERALKIAKAGVTGKLLDSVAREFIREK 281
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 79/154 (51%), Gaps = 7/154 (4%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
R+IK + E+ +M +ASRI+ + ++ GM E E K +L S +A+
Sbjct: 129 RMIKDKEEVKMMEHASRIADKVFEEILTWDLIGMKER--ELALKIELLIRELSDGIAFEP 186
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I ASG N A H+ P ++++ GD+++ D G+ + GY SDIT + + G+ E+
Sbjct: 187 IVASGENAANPHH----EPGERKIRKGDIIILDYGARWKGYCSDITRTIGL-GELDERLV 241
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVV 195
IY V A + +A + G+ D+ A +V+
Sbjct: 242 KIYEVVKDAQESAFKAVREGIKAKDVDSRAREVI 275
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 12/167 (7%)
Query: 39 RYSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVA 98
R R++K E+D + A H V + G E Q A I+ G S VA
Sbjct: 145 RQLRMVKEAAEVDALAKAGAAIDRVHARVPAFLVPGRTEAQVAADIAEAIVAEGHSA-VA 203
Query: 99 YTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSY-CGYASDITCSYPVNGKFT 157
+ I SG +GA H+G+ +D+++ GD++V D+G +Y GY SD T +Y + G +
Sbjct: 204 F-VIVGSGPHGADPHHGY----SDRKLQVGDIVVVDIGGTYEPGYYSDSTRTYSI-GDPS 257
Query: 158 EKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGL 204
A Y+A+ A RA ++A +PGV+ + A V L D GL
Sbjct: 258 PDVAQQYSALQRAQRAAVDAVRPGVTAAQVDAAARDV----LADAGL 300
>pdb|3L24|A Chain A, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|B Chain B, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|C Chain C, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L7G|A Chain A, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|B Chain B, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|C Chain C, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
Length = 517
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 17/179 (9%)
Query: 40 YSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRH-VA 98
Y R KT+ EL MR A++I+ + H++ G E++ I + Y+L S +
Sbjct: 155 YHRAYKTQYELACMREANKIAVQGHKAARDAFFQGKSEFE---IQQAYLLATQHSENDNP 211
Query: 99 YTCICASGGNGAVLHYGHAS--APNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVN--G 154
Y I A N A+LHY H AP R + D G+++ GYA+DIT +Y G
Sbjct: 212 YGNIVALNENCAILHYTHFDRVAPATHR-----SFLIDAGANFNGYAADITRTYDFTGEG 266
Query: 155 KFTEKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELM 213
+F E A + + A+M PG + ++H ++ V L D ++ + DE++
Sbjct: 267 EFAELVATMKQHQI----ALMNQLAPGKLYGELHLDCHQRVAQTLSDFNIVDLSADEIV 321
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 6/157 (3%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
R+IKT+ E+ +++ A++I+ A ++ + G+ E + + ++ G + ++
Sbjct: 128 RLIKTDSEIKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSS-SFDI 186
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I ASG A+ H G AS +K + GD + D G+ Y GY SDIT + V G+ ++K
Sbjct: 187 IVASGLRSALPH-GVAS---EKVIETGDFVTLDFGAYYKGYCSDITRTIAV-GEPSDKLK 241
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSK 198
IYN VL A + K G++ + L + K
Sbjct: 242 EIYNIVLEAQLRGVNGIKAGLTGREADALTRDYITEK 278
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
R IK + E+ + A+ I + + G E + ++ I G+ V++
Sbjct: 148 REIKDKDEIKAHKKAAEIVDKVFYRFIEGKLEGKSERELANRIEYMIKNEFGADDVSFEP 207
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I ASG NGA H+ P+ +++ GD+++FD G+ Y GY SD+T + V G +E+
Sbjct: 208 IVASGPNGANPHH----RPSHRKIRKGDVVIFDYGAKYLGYCSDVTRTV-VVGPPSEEVK 262
Query: 162 YIYNAVLSANRAVMEAAKPGV 182
+Y V A ++ G+
Sbjct: 263 KVYEIVKEAQETAVQKVAEGI 283
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 16/162 (9%)
Query: 44 IKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEA----IFKHYILYVGGSRHVAY 99
IKT E++ M+ A + + A R V + + G + E IFK + + Y
Sbjct: 16 IKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGY 75
Query: 100 ---TCICASGGNGAVLHYGHASAPNDKRV-NDGDMLVFDMGSSYCGYASDITCSYPVNGK 155
TC+ N V+H P ++V +GD++ D+G+ Y G D +Y V G+
Sbjct: 76 KYATCVSV---NEEVVH----GLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIV-GE 127
Query: 156 FTEKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLS 197
E+ + ++ KPG+ D+ H + V S
Sbjct: 128 TDERGKELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVES 169
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/142 (19%), Positives = 58/142 (40%), Gaps = 9/142 (6%)
Query: 44 IKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHV----AY 99
++T ++ MR A RI++ A + V+ G+ + + I Y++ G +
Sbjct: 47 VQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGF 106
Query: 100 TCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEK 159
C++ N + H P+ + DGD++ D+ + G D ++P G ++
Sbjct: 107 PKSCSTSLNEVICH----GIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPA-GDVADE 161
Query: 160 QAYIYNAVLSANRAVMEAAKPG 181
+ + A + KPG
Sbjct: 162 HRLLVDRTREATMRAINTVKPG 183
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 9/142 (6%)
Query: 44 IKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHV----AY 99
++T ++ MR A RI++ A + V+ G+ + + I Y++ G +
Sbjct: 47 VQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGF 106
Query: 100 TCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEK 159
C + N + H P+ + DGD++ D+ + G D ++P G ++
Sbjct: 107 PKSCCTSLNEVICH----GIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPA-GDVADE 161
Query: 160 QAYIYNAVLSANRAVMEAAKPG 181
+ + A + KPG
Sbjct: 162 HRLLVDRTREATMRAINTVKPG 183
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 9/142 (6%)
Query: 44 IKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHV----AY 99
++T ++ MR A RI++ A + V+ G+ + + I Y++ G +
Sbjct: 41 VQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGF 100
Query: 100 TCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEK 159
C + N + H P+ + DGD++ D+ + G D ++P G ++
Sbjct: 101 PKSCCTSLNEVICH----GIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPA-GDVADE 155
Query: 160 QAYIYNAVLSANRAVMEAAKPG 181
+ + A + KPG
Sbjct: 156 HRLLVDRTREATMRAINTVKPG 177
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 9/142 (6%)
Query: 44 IKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHV----AY 99
++T ++ MR A RI++ A + V+ G+ + + I Y++ G +
Sbjct: 44 VQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGF 103
Query: 100 TCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEK 159
C + N + H P+ + DGD++ D+ + G D ++P G ++
Sbjct: 104 PKSCCTSLNEVICH----GIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPA-GDVADE 158
Query: 160 QAYIYNAVLSANRAVMEAAKPG 181
+ + A + KPG
Sbjct: 159 HRLLVDRTREATMRAINTVKPG 180
>pdb|3CTZ|A Chain A, Structure Of Human Cytosolic X-Prolyl Aminopeptidase
Length = 623
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 97 VAYTCICASGGNGAVLHYGHASAPNDKRVNDGDML-VFDMGSSYCGYASDITCSYPVNGK 155
+++ I ++G GA++HY A P R D + + D G+ Y +D+T +
Sbjct: 379 LSFPTISSTGPTGAIIHY--APVPETNRTLSLDEVYLIDSGAQYKDGTTDVTRTMHFETP 436
Query: 156 FT-EKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGL--LRGT 208
EK+ + Y VL + AV A P + HL + S L D GL L GT
Sbjct: 437 TAYEKECFTY--VLKGHIAVSAAVFPTGT---KGHLLDSFARSALWDSGLDYLHGT 487
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 108 NGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVN----GKFTEKQAYI 163
N V H+ + D + +GD++ D+G G+ +++ ++ V+ + T ++A +
Sbjct: 83 NNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQGTQVTGRKADV 142
Query: 164 YNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLS 197
A A + KPG + NKV S
Sbjct: 143 IKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHS 176
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 108 NGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVN----GKFTEKQAYI 163
N V H+ + D + +GD++ D+G G+ +++ ++ V+ + T ++A +
Sbjct: 90 NNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQGTQVTGRKADV 149
Query: 164 YNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLS 197
A A + KPG + NKV S
Sbjct: 150 IKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHS 183
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 108 NGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPV----NGKFTEKQAYI 163
N V H+ + D + +GD++ D+G G+ +++ ++ + + T ++A +
Sbjct: 76 NNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIGVAQGTQVTGRKADV 135
Query: 164 YNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLS 197
A A + KPG + NKV S
Sbjct: 136 IKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHS 169
>pdb|1HKF|A Chain A, The Three Dimensional Structure Of Nk Cell Receptor Nkp44,
A Triggering Partner In Natural Cytotoxicity
Length = 122
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 138 SYCGYASDITCSYPVNGKFTEKQAYIYNA-VLSANRAVMEAAKPGVSWVDMHHLANKVVL 196
S G + C YP G EK+ + A L R V + ++W + +
Sbjct: 22 SVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDP-- 79
Query: 197 SKLLDIGLLRGTIDELMEESYFHWAFGVYEP 227
D G T+ +L EE H+ +Y P
Sbjct: 80 ----DAGFFTVTMTDLREEDSGHYWCRIYRP 106
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus
pdb|1AJ8|B Chain B, Citrate Synthase From Pyrococcus Furiosus
Length = 371
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 251 YVVWMGQLPTLDEYKEKYQVDEVYFSDEVMYSRAYLHDITAKEWAFKSLTHPLG 304
Y++W G+LP+L E + F E+ SR ++ A THP+G
Sbjct: 46 YLLWWGKLPSLSELEN--------FKKELAKSRGLPKEVIEIMEALPKNTHPMG 91
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 14/152 (9%)
Query: 43 VIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGG-------SR 95
++KTE EL ++ I ++ ++ G+ + + I K G
Sbjct: 2 IVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDEN 61
Query: 96 HVAYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGK 155
TCI N V H P+ + + +GD++ D+ + GY +D S+ V
Sbjct: 62 FPGQTCISV---NEEVAH----GIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGES 114
Query: 156 FTEKQAYIYNAVLSANRAVMEAAKPGVSWVDM 187
+ + + A + KPG ++
Sbjct: 115 DDPMKQKVCDVATMAFENAIAKVKPGTKLSNI 146
>pdb|3CB5|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (form A)
pdb|3CB5|B Chain B, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (form A)
Length = 444
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 27/166 (16%)
Query: 44 IKTELELDVMRYASRISSEAHRSVM-----------RKVSAGMYEYQAEAIFKHYILYVG 92
IK E EL ++ ASR+S +K++ + Q E++ + +
Sbjct: 177 IKDEQELANIKGASRVSVAVXSKYFVDELSTYIDQGKKITHSKFSDQXESLIDNEAFFQT 236
Query: 93 GSRHVA----------YTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGY 142
S + YT I SGG+ + SA D R GD+++ +G Y Y
Sbjct: 237 KSLKLGDIDLDQLEWCYTPIIQSGGSYDL----KPSAITDDRNLHGDVVLCSLGFRYKSY 292
Query: 143 ASDITCSYPVNGKFTEKQAYIYNAVLSANRAVMEAAKPGVSWVDMH 188
S++ +Y + +++ Y + +++ + + E + G D++
Sbjct: 293 CSNVGRTYLFDPDSEQQKNYSF--LVALQKKLFEYCRDGAVIGDIY 336
>pdb|3CB6|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (Form B)
Length = 444
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 27/166 (16%)
Query: 44 IKTELELDVMRYASRISSEAHRSVM-----------RKVSAGMYEYQAEAIFKHYILYVG 92
IK E EL ++ ASR+S +K++ + Q E++ + +
Sbjct: 177 IKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQT 236
Query: 93 GSRHVA----------YTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGY 142
S + YT I SGG+ + SA D R GD+++ +G Y Y
Sbjct: 237 KSLKLGDIDLDQLEWCYTPIIQSGGSYDL----KPSAITDDRNLHGDVVLCSLGFRYKSY 292
Query: 143 ASDITCSYPVNGKFTEKQAYIYNAVLSANRAVMEAAKPGVSWVDMH 188
S++ +Y + +++ Y + +++ + + E + G D++
Sbjct: 293 CSNVGRTYLFDPDSEQQKNYSF--LVALQKKLFEYCRDGAVIGDIY 336
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,281,013
Number of Sequences: 62578
Number of extensions: 392612
Number of successful extensions: 867
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 806
Number of HSP's gapped (non-prelim): 42
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)